mqsegment_attributes.h

#ifndef _MQSEGMENT_ATTRIBUTES_H_
#define _MQSEGMENT_ATTRIBUTES_H_

/* Copyright (c) Kyriacos Leptos and the President and Fellows of Harvard University
   Release Date: 2004-11-01
   Part of the MapQuant suite library "massspec.lib" 
*/

struct MQSegmentAttributes
{
    int                     nLabel;
    Rectangle4i             rRect;
    int                     nArea;
    int                     nPeaks;
    Peak2i                  seed;
    
    float                   dTIC;
    float                   dMaxAbundance;
};

typedef struct MQSegmentAttributes MQSegmentAttributes;

int         MQSegmentAttributes_init(MQSegmentAttributes* attr);
int         MQSegmentAttributes_cmpByNPeaks(const void *p1, const void *p2);
MQSegmentAttributes  MQSegmentAttributes_readline(char* line);
int         MQSegmentAttributes_updateRectangle(MQSegmentAttributes* attr, Map2D* map, Peak2i peak);

void        MQSegmentAttributes_fprint        (FILE* fp, MQSegmentAttributes *attr);
void        MQSegmentAttributes_fprintWithPeaks(FILE* fp, MQSegmentAttributes *attr);

int             MQSegmentAttributesArray_init(MQSegmentAttributes* attr, int nattr);
MQSegmentAttributes*        MQSegmentAttributesArray_load(char* filename, int* size);
void            MQSegmentAttributesArray_sortByNPeaks(MQSegmentAttributes* attr, long nsize);
MQSegmentAttributes*        MQSegmentAttributesArray_create(int size);

void            MQSegmentAttributesArray_fprint         (FILE* fp, MQSegmentAttributes *attr, int nsize);
void            MQSegmentAttributesArray_fprintWithPeaks    (FILE* fp, MQSegmentAttributes *attr, int nsize);

Rectangle4i*    MQSegmentAttributesArray_getRectangleArray(MQSegmentAttributes* attr, int nAttr, struct Map2D* map);
int*            MQSegmentAttributesArray_getLabelArray(MQSegmentAttributes* attr, int nAttr);
MQString*       MQSegmentAttributesArray_toStringArray(MQSegmentAttributes* attr, int nAttr, const char* format);

#endif

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