param.h

#ifndef _PARAM_H_
#define _PARAM_H_

/* Copyright (c) Kyriacos Leptos and the President and Fellows of Harvard University
   Release Date: 2004-11-01
   Part of the MapQuant suite library "massspec.lib" 
*/

/* CURVE FITTING PARAMETERS */

typedef enum
{       PARAM_RT        = 0x00000001,
        PARAM_MZ        = 0x00000002,
        PARAM_Z         = 0x00000004,
        PARAM_C         = 0x00000008,
        PARAM_SIGMA_MZ  = 0x00000010, 
        PARAM_SIGMA_RT  = 0x00000020,
        PARAM_ABUNDANCE = 0x00000040,
        PARAM_RT_FIT_DISPL = 0x10000000,
        PARAM_MZ_FIT_DISPL = 0x20000000,
        PARAM_ALL       = 0xFFFFFFFF
} ParameterName;

extern int* PARAM_sigfigs;

extern int* CURVE_ARRAY;

extern float NR_GAUSSIAN_INIT_N;

extern float NR_EM_GAUSSIAN_INIT_U;
extern float NR_EM_GAUSSIAN_INIT_V;

//extern float NR_GAUSSIOID_INIT_U; // sigma t
//extern float NR_GAUSSIOID_INIT_N; // sigma m

//extern float  NR_BD_GAUSSIOID_INIT_U; // sigma t
//extern float  NR_BD_GAUSSIOID_INIT_N; // sigma m

extern float* NR_BD_GAUSSIOID_INIT_Z; // charge
extern int* NR_BD_GAUSSIOID_INIT_C; // carbons
extern float* NR_BD_GAUSSIOID_INIT_M; // m/z
extern float  NR_GAUSSIOID_INIT_VN[6];
extern int  NR_GAUSSIOID_INIT_VN_ON;

float*      loadParameterArrayFromFile(char* filename, int* no_param);
int         loadNumberOfParametersFromFile(char* filename);
int*        loadParameterStateArrayFromFile(char* filename);
void        normalizeParArray(float* par_array, int size);
int*        getStateParamArray(int n, int* pattern, int n_per_pattern);


int ParamArray_checkForNegatives(float* array, int nsize);

void    ParamArray_fprintSingleCurve(FILE* fp, float* param_array, int nparam, int curve_type);
void    ParamStateArray_fprintSingleCurve(FILE* fp, int* param_state_array, int nparam, int curve_type);

void    ParamArray_fprintMultipleCurves(FILE* fp, float* param_array, int* pCurves, int nCurves);
void    ParamStateArray_fprintMultipleCurves(FILE* fp, int* param_state_array,int* pCurves, int nCurves);

void    ParamArray_fprint(FILE* fp, float* param_array, int nparam);

int     cmpParamArrays(float* par_array, float* prev_par_array, int size);

#endif

---