% CG3799_overexp bestNN(1).class='CG3799_overexp'; bestNN(1).datafile='CG3799_overexp_vs_all_n_9_1_w.w16_20.data.txt'; bestNN(1).InitialWeightSetIndex=4; bestNN(1).InitialWeightSet=19; bestNN(1).GenerrorSens_Leave1Out=0.763636; bestNN(1).GenerrorSpec_Leave1Out=0.870494; bestNN(1).Network='n_9_1_w'; bestNN(1).LayerDef=[1]; bestNN(1).InputFeatureIndices=[50 22 24 3 4 2 44 23 16]; bestNN(1).InputFeatureNames={'LoSmoothGFPCentroidClosestFocusRelOffset' 'GFPHalfMassRelDistanceFromBoundary' 'GFPHalfMassRelDistanceFromGFPCentroid' 'Eccentricity' 'MajorAxisLength' 'Solidity' 'GFPGauss2DFitRelativeOffsetMeanFromSegCentroid' 'GFPHalfMassRelDistanceFromGFPCenterOfMass' 'GFPCentroidGFPCenterOfMassRelOffset'}; bestNN(1).net.IW=cell(1,1); bestNN(1).net.IW{1}=[17.9166 -1.62945 8.66927 9.63988 -13.1025 -4.45681 -1.3003 1.13071 -12.8968]; bestNN(1).net.LW=cell(1,1); bestNN(1).net.LW{1}=[]; bestNN(1).net.b=cell(1,1); bestNN(1).net.b{1}=[-13.0556]; % RacF28L bestNN(2).class='RacF28L'; bestNN(2).datafile='RacF28L_vs_all_n_12_1_w.data.txt'; bestNN(2).InitialWeightSetIndex=1; bestNN(2).InitialWeightSet=1; bestNN(2).GenerrorSens_Leave1Out=0.861538; bestNN(2).GenerrorSpec_Leave1Out=0.810089; bestNN(2).Network='n_12_1_w'; bestNN(2).LayerDef=[1]; bestNN(2).InputFeatureIndices=[39 31 55 54 104 125 53 131 110 30 112 123]; bestNN(2).InputFeatureNames={'GFPIntensityLocationMutualInformation_8_20_24' 'GFPEdgeNumber' 'LoSmoothBndUndulationTotalRelativeArea' 'LoSmoothBndUndulationCount' 'HiSmoothBndUndulationCount' 'HiSmoothArea2ndTallestProcess' 'LoSmoothBndNormIntegratedAbsAngle' 'HiSmoothBndAngleTallestProcessesGFPBrightSpotCentroid' 'HiSmoothRelativeAreaSharpestProcess' 'DrainagePixSum' 'HiSmoothArea2ndSharpestProcess' 'HiSmoothHeight2ndTallestProcess'}; bestNN(2).net.IW=cell(1,1); bestNN(2).net.IW{1}=[1.2469 0.741849 -0.650814 -0.438928 0.831518 0.224589 -0.236776 0.714934 0.4959 -0.472004 0.019091 -0.0544285]; bestNN(2).net.LW=cell(1,1); bestNN(2).net.LW{1}=[]; bestNN(2).net.b=cell(1,1); bestNN(2).net.b{1}=[-1.8246]; % RacV12 bestNN(3).class='RacV12'; bestNN(3).datafile='RacV12_vs_all_n_12_1_w.data.txt'; bestNN(3).InitialWeightSetIndex=20; bestNN(3).InitialWeightSet=20; bestNN(3).GenerrorSens_Leave1Out=0.822222; bestNN(3).GenerrorSpec_Leave1Out=0.749671; bestNN(3).Network='n_12_1_w'; bestNN(3).LayerDef=[1]; bestNN(3).InputFeatureIndices=[48 55 39 77 119 25 29 99 33 127 123 7]; bestNN(3).InputFeatureNames={'LoSmoothMinorAxisLength' 'LoSmoothBndUndulationTotalRelativeArea' 'GFPIntensityLocationMutualInformation_8_20_24' 'LoSmoothBase2ndTallestProcess' 'HiSmoothAreaTallestProcess' 'GFPHalfMassRelDistanceFromGFPBrightSpotCentroid' 'DrainageArea' 'HiSmoothEllipticity' 'GFPEdgePixelDensity' 'HiSmoothBase2ndTallestProcess' 'HiSmoothHeight2ndTallestProcess' 'MeanIntensity'}; bestNN(3).net.IW=cell(1,1); bestNN(3).net.IW{1}=[1.08822 -0.216099 0.696179 0.734791 0.262022 -0.729276 -0.803324 0.00487389 0.921379 -0.0161171 0.501623 -0.635846]; bestNN(3).net.LW=cell(1,1); bestNN(3).net.LW{1}=[]; bestNN(3).net.b=cell(1,1); bestNN(3).net.b{1}=[-2.45869]; % RacV12_RacF28L bestNN(4).class='RacV12_RacF28L'; bestNN(4).datafile='RacV12_RacF28L_vs_all_n_9_1_w.data.txt'; bestNN(4).InitialWeightSetIndex=18; bestNN(4).InitialWeightSet=18; bestNN(4).GenerrorSens_Leave1Out=0.862857; bestNN(4).GenerrorSpec_Leave1Out=0.807631; bestNN(4).Network='n_9_1_w'; bestNN(4).LayerDef=[1]; bestNN(4).InputFeatureIndices=[31 39 55 54 125 53 104 30 131]; bestNN(4).InputFeatureNames={'GFPEdgeNumber' 'GFPIntensityLocationMutualInformation_8_20_24' 'LoSmoothBndUndulationTotalRelativeArea' 'LoSmoothBndUndulationCount' 'HiSmoothArea2ndTallestProcess' 'LoSmoothBndNormIntegratedAbsAngle' 'HiSmoothBndUndulationCount' 'DrainagePixSum' 'HiSmoothBndAngleTallestProcessesGFPBrightSpotCentroid'}; bestNN(4).net.IW=cell(1,1); bestNN(4).net.IW{1}=[14.2916 26.4722 -9.89731 12.1796 2.35043 12.8311 7.99872 18.8437 -10.8958]; bestNN(4).net.LW=cell(1,1); bestNN(4).net.LW{1}=[]; bestNN(4).net.b=cell(1,1); bestNN(4).net.b{1}=[-54.7291]; % RhoF30L bestNN(5).class='RhoF30L'; bestNN(5).datafile='RhoF30L_vs_all_n_9_3_1_w.w21_25.data.txt'; bestNN(5).InitialWeightSetIndex=5; bestNN(5).InitialWeightSet=25; bestNN(5).GenerrorSens_Leave1Out=0.867188; bestNN(5).GenerrorSpec_Leave1Out=0.841716; bestNN(5).Network='n_9_3_1_w'; bestNN(5).LayerDef=[3 1]; bestNN(5).InputFeatureIndices=[7 70 59 54 120 130 118 110 2]; bestNN(5).InputFeatureNames={'MeanIntensity' 'LoSmoothRelativeAreaTallestProcess' 'LoSmoothAreaSharpestProcess' 'LoSmoothBndUndulationCount' 'HiSmoothRelativeAreaTallestProcess' 'HiSmoothBndAngleTallestProcessesGFPCenterOfMass' 'HiSmoothRelativeHeightTallestProcess' 'HiSmoothRelativeAreaSharpestProcess' 'Solidity'}; bestNN(5).net.IW=cell(2,1); bestNN(5).net.IW{1}=[-0.796334 1.13889 -1.42254 0.0817485 -0.331809 -1.78741 1.0059 1.94136 -0.901125;-2.98355 -0.738616 0.291946 -0.0368713 -3.15286 2.30455 1.87804 0.721951 -1.90726;0.207514 -1.31688 -0.261452 -3.6404 0.118677 -1.69893 2.03674 -1.73472 -3.01704]; bestNN(5).net.IW{2}=[]; bestNN(5).net.LW=cell(2,2); bestNN(5).net.LW{1,1}=[]; bestNN(5).net.LW{1,2}=[]; bestNN(5).net.LW{2,1}=[-2.71813 -5.88907 6.80345]; bestNN(5).net.LW{2,2}=[]; bestNN(5).net.b=cell(2,1); bestNN(5).net.b{1}=[0.690331;2.77956;3.63154]; bestNN(5).net.b{2}=[-2.16477]; % RhoV14 bestNN(6).class='RhoV14'; bestNN(6).datafile='RhoV14_vs_all_n_3_1_w.w16_20.data.txt'; bestNN(6).InitialWeightSetIndex=1; bestNN(6).InitialWeightSet=16; bestNN(6).GenerrorSens_Leave1Out=0.857143; bestNN(6).GenerrorSpec_Leave1Out=0.856952; bestNN(6).Network='n_3_1_w'; bestNN(6).LayerDef=[1]; bestNN(6).InputFeatureIndices=[21 2 36]; bestNN(6).InputFeatureNames={'GFPMultivariateKurtosis' 'Solidity' 'GFPIntensityLocationMutualInformation_5_15_15'}; bestNN(6).net.IW=cell(1,1); bestNN(6).net.IW{1}=[1.07755 -1.08556 -0.980691]; bestNN(6).net.LW=cell(1,1); bestNN(6).net.LW{1}=[]; bestNN(6).net.b=cell(1,1); bestNN(6).net.b{1}=[-1.17582]; % RhoV14_RhoF30L bestNN(7).class='RhoV14_RhoF30L'; bestNN(7).datafile='RhoV14_RhoF30L_vs_all_n_11_3_1_w.w1_5.data.txt'; bestNN(7).InitialWeightSetIndex=3; bestNN(7).InitialWeightSet=3; bestNN(7).GenerrorSens_Leave1Out=0.820652; bestNN(7).GenerrorSpec_Leave1Out=0.798387; bestNN(7).Network='n_11_3_1_w'; bestNN(7).LayerDef=[3 1]; bestNN(7).InputFeatureIndices=[55 32 59 39 7 54 9 29 22 125 130]; bestNN(7).InputFeatureNames={'LoSmoothBndUndulationTotalRelativeArea' 'GFPEdgeTotalPixels' 'LoSmoothAreaSharpestProcess' 'GFPIntensityLocationMutualInformation_8_20_24' 'MeanIntensity' 'LoSmoothBndUndulationCount' '90thPercentileIntensity' 'DrainageArea' 'GFPHalfMassRelDistanceFromBoundary' 'HiSmoothArea2ndTallestProcess' 'HiSmoothBndAngleTallestProcessesGFPCenterOfMass'}; bestNN(7).net.IW=cell(2,1); bestNN(7).net.IW{1}=[-2.64664 -0.0160709 1.21628 1.91881 -1.24582 2.78081 -0.644187 0.510655 -1.80148 0.265985 2.23615;0.296624 3.01894 0.0468292 0.287247 1.46572 0.872196 -1.38147 -3.65214 0.788285 0.0376845 -0.104786;1.5111 -0.766199 -0.646199 0.61764 7.05509 1.18315 -5.35838 1.15031 0.529201 -0.197204 -0.708869]; bestNN(7).net.IW{2}=[]; bestNN(7).net.LW=cell(2,2); bestNN(7).net.LW{1,1}=[]; bestNN(7).net.LW{1,2}=[]; bestNN(7).net.LW{2,1}=[-6.39897 6.11527 -8.0176]; bestNN(7).net.LW{2,2}=[]; bestNN(7).net.b=cell(2,1); bestNN(7).net.b{1}=[-3.06866;-0.131483;6.18646]; bestNN(7).net.b{2}=[5.05442]; % Sif1_full_overexp bestNN(8).class='Sif1_full_overexp'; bestNN(8).datafile='Sif1_full_overexp_vs_all_n_10_1_w.data.txt'; bestNN(8).InitialWeightSetIndex=1; bestNN(8).InitialWeightSet=1; bestNN(8).GenerrorSens_Leave1Out=0.690789; bestNN(8).GenerrorSpec_Leave1Out=0.642638; bestNN(8).Network='n_10_1_w'; bestNN(8).LayerDef=[1]; bestNN(8).InputFeatureIndices=[8 81 46 38 78 21 68 63 7 22]; bestNN(8).InputFeatureNames={'StdIntensity' 'LoSmoothBndAngleTallestProcessesGFPBrightSpotCentroid' 'LoSmoothEccentricity' 'GFPIntensityLocationMutualInformation_5_20_15' 'LoSmoothRelativeBase2ndTallestProcess' 'GFPMultivariateKurtosis' 'LoSmoothRelativeHeightTallestProcess' 'LoSmoothRelativeArea2ndSharpestProcess' 'MeanIntensity' 'GFPHalfMassRelDistanceFromBoundary'}; bestNN(8).net.IW=cell(1,1); bestNN(8).net.IW{1}=[-0.681868 0.174989 0.545993 0.356776 0.123026 -0.414634 0.101747 0.107903 0.233067 0.215841]; bestNN(8).net.LW=cell(1,1); bestNN(8).net.LW{1}=[]; bestNN(8).net.b=cell(1,1); bestNN(8).net.b{1}=[-0.329401]; % delRhoGEF3_const_overexp bestNN(9).class='delRhoGEF3_const_overexp'; bestNN(9).datafile='delRhoGEF3_const_overexp_vs_all_n_12_2_1_w.w1_5.data.txt'; bestNN(9).InitialWeightSetIndex=2; bestNN(9).InitialWeightSet=2; bestNN(9).GenerrorSens_Leave1Out=1; bestNN(9).GenerrorSpec_Leave1Out=0.957162; bestNN(9).Network='n_12_2_1_w'; bestNN(9).LayerDef=[2 1]; bestNN(9).InputFeatureIndices=[60 35 3 70 80 39 66 73 54 2 100 6]; bestNN(9).InputFeatureNames={'LoSmoothRelativeAreaSharpestProcess' 'GFPEdgeMeanRelativeLength' 'Eccentricity' 'LoSmoothRelativeAreaTallestProcess' 'LoSmoothBndAngleTallestProcessesGFPCenterOfMass' 'GFPIntensityLocationMutualInformation_8_20_24' 'LoSmoothBndAngleSharpestProcessesGFPBrightSpotCentroid' 'LoSmoothHeight2ndTallestProcess' 'LoSmoothBndUndulationCount' 'Solidity' 'HiSmoothGFPCentroidClosestFocusRelOffset' 'EquivDiameter'}; bestNN(9).net.IW=cell(2,1); bestNN(9).net.IW{1}=[0.763332 0.212528 0.492412 -0.680266 0.966854 -0.235002 -0.845242 -1.1778 2.60937 3.66237 -1.44168 -1.784;3.11482 2.91269 -1.64942 1.74856 -1.58622 -1.61177 -1.19995 -1.48559 -0.874383 1.0886 -0.760635 -0.735316]; bestNN(9).net.IW{2}=[]; bestNN(9).net.LW=cell(2,2); bestNN(9).net.LW{1,1}=[]; bestNN(9).net.LW{1,2}=[]; bestNN(9).net.LW{2,1}=[9.52628 1.81887]; bestNN(9).net.LW{2,2}=[]; bestNN(9).net.b=cell(2,1); bestNN(9).net.b{1}=[-7.24861;-1.14241]; bestNN(9).net.b{2}=[-6.15017]; % gfp1 bestNN(10).class='gfp1'; bestNN(10).datafile='gfp1_vs_all_n_11_2_1_w.data.txt'; bestNN(10).InitialWeightSetIndex=6; bestNN(10).InitialWeightSet=6; bestNN(10).GenerrorSens_Leave1Out=0.668966; bestNN(10).GenerrorSpec_Leave1Out=0.722307; bestNN(10).Network='n_11_2_1_w'; bestNN(10).LayerDef=[2 1]; bestNN(10).InputFeatureIndices=[57 88 85 69 61 2 92 107 76 59 74]; bestNN(10).InputFeatureNames={'LoSmoothBndProcessesGE1' 'LoSmoothBndAngleLargestProcessesGE0.5GFPBrightSpotCentroid' 'LoSmoothBndSecondLargestRelativeAreaForProcessGE0.5' 'LoSmoothAreaTallestProcess' 'LoSmoothBndCurvature2ndSharpestProcess' 'Solidity' 'LoSmoothBndSecondLargestRelativeAreaForProcessGE1' 'HiSmoothBndProcessesGE1' 'LoSmoothRelativeArea2ndTallestProcess' 'LoSmoothAreaSharpestProcess' 'LoSmoothRelativeHeight2ndTallestProcess'}; bestNN(10).net.IW=cell(2,1); bestNN(10).net.IW{1}=[-3.30143 1.60495 -5.54234 3.67836 0.898239 5.23938 3.55387 2.03503 -7.60575 1.68954 -2.65216;-1.08405 -0.253429 -2.45572 0.201319 -1.66786 -2.76921 1.01372 -2.99758 -1.13163 10.4605 -1.15779]; bestNN(10).net.IW{2}=[]; bestNN(10).net.LW=cell(2,2); bestNN(10).net.LW{1,1}=[]; bestNN(10).net.LW{1,2}=[]; bestNN(10).net.LW{2,1}=[-1.88191 -1.93211]; bestNN(10).net.LW{2,2}=[]; bestNN(10).net.b=cell(2,1); bestNN(10).net.b{1}=[-8.41842;2.8378]; bestNN(10).net.b{2}=[1.95898]; % oncoSif bestNN(11).class='oncoSif'; bestNN(11).datafile='oncoSif_vs_all_n_5_1_w.data.txt'; bestNN(11).InitialWeightSetIndex=5; bestNN(11).InitialWeightSet=5; bestNN(11).GenerrorSens_Leave1Out=0.972222; bestNN(11).GenerrorSpec_Leave1Out=0.927083; bestNN(11).Network='n_5_1_w'; bestNN(11).LayerDef=[1]; bestNN(11).InputFeatureIndices=[29 119 11 109 71]; bestNN(11).InputFeatureNames={'DrainageArea' 'HiSmoothAreaTallestProcess' 'GFPBrightSpotTotalArea' 'HiSmoothAreaSharpestProcess' 'LoSmoothBaseTallestProcess'}; bestNN(11).net.IW=cell(1,1); bestNN(11).net.IW{1}=[4.93573 2.32014 -3.17211 -0.964002 1.98641]; bestNN(11).net.LW=cell(1,1); bestNN(11).net.LW{1}=[]; bestNN(11).net.b=cell(1,1); bestNN(11).net.b{1}=[-8.78102]; % oncoSif_Sif1_full_overexp bestNN(12).class='oncoSif_Sif1_full_overexp'; bestNN(12).datafile='oncoSif_Sif1_full_overexp_vs_all_n_10_1_w.w1_5.data.txt'; bestNN(12).InitialWeightSetIndex=2; bestNN(12).InitialWeightSet=2; bestNN(12).GenerrorSens_Leave1Out=0.712766; bestNN(12).GenerrorSpec_Leave1Out=0.673701; bestNN(12).Network='n_10_1_w'; bestNN(12).LayerDef=[1]; bestNN(12).InputFeatureIndices=[119 29 39 77 9 81 109 1 7 2]; bestNN(12).InputFeatureNames={'HiSmoothAreaTallestProcess' 'DrainageArea' 'GFPIntensityLocationMutualInformation_8_20_24' 'LoSmoothBase2ndTallestProcess' '90thPercentileIntensity' 'LoSmoothBndAngleTallestProcessesGFPBrightSpotCentroid' 'HiSmoothAreaSharpestProcess' 'Area' 'MeanIntensity' 'Solidity'}; bestNN(12).net.IW=cell(1,1); bestNN(12).net.IW{1}=[-0.0650845 1.30551 0.576658 0.00462772 -0.246334 0.404417 0.0232193 -1.5801 -0.0808972 0.288708]; bestNN(12).net.LW=cell(1,1); bestNN(12).net.LW{1}=[]; bestNN(12).net.b=cell(1,1); bestNN(12).net.b{1}=[-0.363031];