Note that genome and enhancer annotations come from the following references:
Berman, B. P., Nibu, Y., Pfeiffer, B. D., Tomancak, P., Celniker, S. E., Levine, M., Rubin, G. M., and Eisen, M. B. (2002). "Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome." Proc Natl Acad Sci U S A, 99(2), 757-62.
Lifanov, A. P., Makeev, V. J., Nazina, A. G., and Papatsenko, D. A. (2003). "Homotypic regulatory clusters in Drosophila." Genome Res, 13(4), 579-88.
Misra, S., Crosby, M. A., Mungall, C. J., Matthews, B. B., Campbell, K. S., Hradecky, P., Huang, Y., Kaminker, J. S., Millburn, G. H., Prochnik, S. E., Smith, C. D., Tupy, J. L., Whitfied, E. J., Bayraktaroglu, L., Berman, B. P., Bettencourt, B. R., Celniker, S. E., de Grey, A. D., Drysdale, R. A., Harris, N. L., Richter, J., Russo, S., Schroeder, A. J., Shu, S. Q., Stapleton, M., Yamada, C., Ashburner, M., Gelbart, W. M., Rubin, G. M., and Lewis, S. E. (2002). "Annotation of the Drosophila melanogaster euchromatic genome: a systematic review." Genome Biol, 3(12), RESEARCH0083.
Rajewsky, N., Vergassola, M., Gaul, U., and Siggia, E. D. (2002). "Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo." BMC Bioinformatics, 3(1), 30.