Supplementary data for sequence-structure-function analyses of protein families

To accompany the following paper:

Predicting ligand binding function in families of bacterial receptors

J.M. Johnson and G.M. Church (1999), submitted manuscript.

LacI/RbsB family

SubI family


To accompany the following paper:

Alignment and Structure Prediction of Diverse Protein Families: Periplasmic and Outer Membrane Proteins of Bacterial Efflux Pumps

J. M. Johnson and G. M. Church (1999) J. Mol. Biol. 287: 695-715.

OEP family (outer-membrane efflux proteins)

PEP family (periplasmic efflux proteins)

The above alignments are in MSF format.
PSI-BLAST is available at

Please address questions, errors, or comments to