Cluster 1
let-7f
(M.m.; 4) TGAGGTAGTAGATTGTATAGTT--
let-7f
(H.s.; 3) TGAGGTAGTAGATTGTATAGTT--
let-7g
(M.m.; 4) TGAGGTAGTAGTTTGTACAGTA--
let-7i
(M.m.; 4) TGAGGTAGTAGTTTGTGCT-----
let-7h
(M.m.; 4) TGAGGTAGTAGTGTGTACAGTT--
let-7e
(M.m.; 4) TGAGGTAGGAGGTTGTATAGT---
let-7e
(H.s.; 3) TGAGGTAGGAGGTTGTATAGT---
let-7d
(M.m.; 4) AGAGGTAGTAGGTTGCATAGT---
let-7d
(H.s.; 3) AGAGGTAGTAGGTTGCATAGT---
let-7a
(H.s.; 3) TGAGGTAGTAGGTTGTATAGTT--
let-7a
(M.m.; 4) TGAGGTAGTAGGTTGTATAGTT--
let-7
(C.e.; 2) TGAGGTAGTAGGTTGTATAGTT--
let-7b
(M.m.; 4) TGAGGTAGTAGGTTGTGTGGTT--
let-7b
(H.s.; 3) TGAGGTAGTAGGTTGTGTGGTT--
let-7c
(M.m.; 4) TGAGGTAGTAGGTTGTATGGTT--
let-7c
(H.s.; 3) TGAGGTAGTAGGTTGTATGGTT--
mir-84
(C.e.; 2) TGAGGTAGTATGTAATATTGTA--
mir-98
(H.s.; 5) TGAGGTAGTAAGTTGTATTGTT—
Cluster 2
mir-29a
(M.m.; 4) CTAGCACCATCTGAAATCGGTT--
mir-29
(H.s.; 3) CTAGCACCATCTGAAATCGGTT--
mir-29c/
(M.m.; 4) -TAGCACCATTTGAAATCGGTTA-
mir-29b/mir-102
(M.m.; 4) -TAGCACCATTTGAAATCAGTGTT
mir-102
(H.s.; 5) -TAGCACCATTTGAAATCAGT---
mir-83
(C.e.; 2) -TAGCACCATATAAATTCAGTAA-
mir-49
(C.e.; 2) -AAGCACCACGAGAAGCTGCAGA-
Cluster 3
mir-200b
(M.m./H.s.; 6) ---TAATACTGCCTGGTAATGATGAC--
mir-141
(M.m.; 4) ----AACACTGTCTGGTAAAGATGG---
mir-200a
(M.m./H.s.; 6) ---TAACACTGTCTGGTAACGATG----
mir-8
(D.m.; 3) ---TAATACTGTCAGGTAAAGATGTC--
mir-236 ATCTAATACTGTCAGGTAATGACGCTGG
Cluster 4
mir-72
(C.e.; 1) AGGCAAGATGTTGGCATAGC--
mir-72
(C.e.; 2) AGGCAAGATGTTGGCATAGC--
mir-31
(H.s.; 3) -GGCAAGATGCTGGCATAGCTG
cp-mir-266 AGGCAAGACTTTGGCAAAGC--
cp-mir-269 -GGCAAGACTCTGGCAAAACT-
Cluster 5
mir-99a/mir-99
(M.m.; 4) --ACCCGTAGATCCGATCT-TGT--
mir-99
(H.s.; 5) -AACCCGTAGATCCGATCT-TGTG-
mir-100
(H.s.; 5) -AACCCGTAGATCCGAACT-TGTG-
mir-10
(D.m.; 3) -ACCCTGTAGATCCGAATT-TGT--
mir-57
(C.e.; 2) TACCCTGTAGATC-GAGCTGTGTGT
mir-99b
(M.m.; 4) -CACCCGTAGAACCGACCT-TGCG-
mir-51
(C.e.; 2) -TACCCGTAGCTCCTATCCATGTT-
Cluster 6
mir-103
(H.s.; 5) -AGCAGCATTGTACAGGGCTATGA
mir-107
(H.s.; 5) -AGCAGCATTGTACAGGGCTATCA
mir-15a
(M.m.; 4) TAGCAGCA-CATAATGGTTTGTG
mir-15
(H.s.; 3) TAGCAGCA-CATAATGGTTTGTG
mir-15b
(M.m.; 4) TAGCAGCA-CATCATGGTTTACA
mir-16
(H.s.; 3) TAGCAGCA-CGTAAATATTGGCG
mir-16
(H.s.; 5) TAGCAGCA-CGTAAATATTGGCG
mir-16
(M.m.; 4) TAGCAGCA-CGTAAATATTGGCG
mir-114
(H.s.; 5) TAGCTGCA-CGTAAATATTGGCG
mir-195
(M.m./H.s.; 6) TAGCAGCA-CAGAAATATTGGC-
Cluster 7
mir-52
(C.e.; 2) CACCCGTACATATGTTTCCG-TGCT--
mir-53
(C.e.; 2) CACCCGTACATTTGTTTCCG-TGCT--
mir-52
(C.e.; 1) CACCCGTACATATGTTTCCG-TGC---
mir-56_1
(C.e.; 2) TACCCGTA---ATGTTTCCGCTGAG--
mir-55
(C.e.; 2) TACCCGTAT--AAGTTTCTGCTGAG--
cp-mir-267 --CCCGTG---AAGTGTCTGCTGCA--
cp-mir-223 TGCCCGTA---CTGTGTCGGCTG----
mir-54
(C.e.; 2) TACCCGTA---ATCTTCATAATCCGAG
Cluster 8
mir-58
(C.e.; 1) -TGA-GATCGTTCAGTACGG-C----
mir-58
(C.e.; 2) -TGA-GATCGTTCAGTACGG-CAAT-
mir-24
(H.s.; 3) -TGG-CTCAGTTCAGCAGGAACAG--
mir-24
(H.s.; 5) -TGG-CTCAGTTCAGCAGGAACAG--
mir-24
(M.m.; 4) -TGG-CTCAGTTCAGCAGGAACAG--
mir-117
(H.s.; 5) ----------TTCAGCAGGAACAGTT
mir-116
(H.s.; 5) TTGATCCTGGCTCAGGACGAACGCTG
Cluster 9
mir-122b
(M.m.; 4) ---TGGAGTGTGACAATGGTGTTTGA--
mir-122a_b
(M.m.; 4) ---TGGAGTGTGACAATGGTGTTTG---
mir-122a
(M.m.; 4) ---TGGAGTGTGACAATGGTGTTTGT--
cp-mir-272 ---TGTAG----GCATGGGTGTTTG---
mir-70
(C.e.; 2) ---TAATACGT--CGTTGGTGTTTCCAT
mir-78
(C.e.; 2) ---TGGAG----GCCTGGTTGTTTGTGC
Cluster 10
mir-128
(M.m.; 4) -TCACAGTGAACCGGTCTCTTTT---
mir-139
(M.m.; 4) TCTACAGTGCACGTGTCT--------
mir-148
(M.m.; 4) ---TCAGTGCACTA-CAGAACTTTGT
mir-152
(M.m.; 4) ---TCAGTGCATGA-CAGAACTTGG-
mir-17
(H.s.; 3) ACTGCAGTGAAGGCACTTGT----
Cluster 11
mir-175
(M.m./H.s.; 7) --CAAGTCACTAGTGGTTCCGTTTA
mir-26a
(M.m.; 4) TTCAAGTAATCCAGGATAGGCT
mir-26a
(H.s.; 3) TTCAAGTAATCCAGGATAGGCT
mir-26b
(H.s.; 3) TTCAAGTAATTCAGGATAGGTT
mir-26b
(M.m.; 4) TTCAAGTAATTCAGGATAGGTT
Cluster 12
mir-181
(M.m./H.s.; 6) ---AACATTCAAC-GCTG-TC-GGTGAGT-
mir-178
(M.m./H.s.; 7) ---AACATTCAAC-GCTG-TC-GGTGAGTT
mir-89
(C.e.; 1) ---AACACTCAATTTCCAATCAAATAAA--
mir-194
(M.m./H.s.; 6) TGTAACAG-CAAC-TCCA-T---GTGGA--
mir-132
(M.m.; 4) --TAACAGTCTACAGCCA-T--GGTC-GT-
Cluster 13
mir-19b
(H.s.; 3) TGTGCAAATCCATGCAAAACTGA
mir-19b
(H.s.; 5) TGTGCAAATCCATGCAAAACTGA
mir-19b
(M.m.; 4) TGTGCAAATCCATGCAAAACTGA
mir-19a
(H.s.; 3) TGTGCAAATCTATGCAAAACTGA
mir-111
(H.s.; 5) TGTGCAAATCTATGCAAAACTGT
mir-19a
(H.s.; 5) TGTGCAAATCTATGCAAAACTGA
mir-153
(M.m.; 4) -TTGCATAGTCA--CAAAAGTGA
Cluster 14
mir-2
(C.e.; 1) -----TATCACAGCCAGCTTTGATGTGC---
mir-2
(C.e.; 2) -----TATCACAGCCAGCTTTGATGTGC---
mir-13a
(D.m.; 3) -----TATCACAGCCA-TTTTGACGAGT---
mir-13b
(D.m.; 3) -----TATCACAGCCA-TTTTGATGAGT---
mir-2a
(D.m.; 3) -----TATCACAGCCAGCTTTGATGAGC---
mir-2b
(D.m.; 3) -----TATCACAGCCAGCTTTGAGGAGC---
mir-27a
(M.m.; 4) ------TTCACAGTG-GCTAAGTTCCGCT-
mir-27
(H.s.; 3) ------TTCACAGTG-GCTAAGTTCCGCT-
mir-27
(H.s.; 5) ------TTCACAGTG-GCTAAGTTCC----
mir-27b
(M.m.; 4) ------TTCACAGTG-GCTAAGTTCTG---
mir-11
(D.m.; 3) -----CATCACAGT---CTGAGTTCTTGC-
mir-6
(D.m.; 3) -----TATCACAGTG-GCT--GTTCTTTTT
mir-43
(C.e.; 1) -----TATCACAGTTTACTTGCTGT-----
mir-43
(C.e.; 2) -----TATCACAGTTTACTTGCTGTCGC--
mir-28
(H.s.; 3) AAGGAGCTCACAGTCTATTGAG--------
Cluster 15
mir-39
(C.e.; 2) TCACCGGGTGTAAA-TCAGCTTG
mir-40
(C.e.; 2) TCACCGGGTGTACA-TCAGCTAA
mir-41
(C.e.; 2) TCACCGGGTGAAAAATCACCTA-
mir-36
(C.e.; 2) TCACCGGGTGAAAATTCGCATG-
mir-35
(C.e.; 2) TCACCGGGTGGAAACTAGCAGT-
mir-37
(C.e.; 2) TCACCGGGTGAACACTTGCAGT-
mir-38
(C.e.; 2) TCACCGGGAGAAAAACTGGAGT-
mir-42
(C.e.; 1) TCACCGGGTTAACATCTAC----
mir-42
(C.e.; 2) -CACCGGGTTAACATCTACAG--
Cluster 16
mir-79
(C.e.; 2) ATAAAGCTAGGTTACCAAAGCT-
mir-131
(M.m.; 4) -TAAAGCTAGATAACCGAAAGT-
mir-4
(D.m.; 3) ATAAAGCTAGACAACCATTGA--
mir-75
(C.e.; 2) TTAAAGCTAC-CAACCGGCTTCA
Cluster 17
mir-23a
(M.m.; 4) ATCACATTGCCAGGGATTTCC-----
mir-23
(H.s.; 3) ATCACATTGCCAGGGATTTCC-----
mir-23
(H.s.; 5) ATCACATTGCCAGGGATTTCCA----
mir-23b
(M.m.; 4) ATCACATTGCCAGGGATTACCAC---
mir-119
(H.s.; 5) -----ATTGCCAGGGATTACCAT---
mir-181
(M.m./H.s.; 7) ------GTGCTAGGGATTGGGGCTTG
Cluster 18
mir-94
(H.s.; 5) -AAAGTGCTGACAGTGCAGAT---
mir-195
(M.m./H.s.; 7) CAAAGTGCTGACAGTTCAGGTAG-
mir-91
(H.s.; 5) CAAAGTGCTTACAGTGCAGGTAGT
mir-106
(H.s.; 5) AAAAGTGCTTACAGTGCAGGTAGC
mir-182a
(M.m./H.s.; 7) CAAAGTGCTGTTAGTGCAGGTAG-
mir-182b
(M.m./H.s.; 7) CAAAGTGCTGTTATTGCAGG----
mir-93
(H.s.; 5) -AAAGTGCTGTTCGTGCAGGTAG-
mir-20
(M.m.; 4) TAAAGTGCTTATAGTGCAGGTAG-
mir-20
(H.s.; 3) TAAAGTGCTTATAGTGCAGGTA--
mir-18
(M.m.; 4) TAAGGTGCATCTAGTGCAGATA--
mir-18
(H.s.; 5) TAAGGTGCATCTAGTGCAGAT---
mir-18
(H.s.; 3) TAAGGTGCATCTAGTGCAGATA--
Cluster 19
mir-73
(C.e.; 2) TGGCAAGATGTAG--GCAGTTCAGT--
cp-mir-268 -GGCAAGAATTAGAAGCAGTTTGGT--
mir-74
(C.e.; 2) TGGCAAGAAATGG---CAGTCTACA--
Cluster 20
lin-4
(C.e.; 2) TCCCTGAGACC--TCAAGT-GTGA
mir-125b
(M.m.; 4) TCCCTGAGACC--CTAACTTGTGA
mir-125a
(M.m.; 4) TCCCTGAGACCCTTTAACCTGTG-
Cluster 21
mir-64
(C.e.; 2) TATGACAC-TGAAGCGTTACCGAA-
mir-65
(C.e.; 2) TATGACAC-TGAAGCGTAACCGAA-
mir-63
(C.e.; 2) TATGACAC-TGAAGCGAGTTGGAAA
mir-66
(C.e.; 2) CATGACAC-TGATTAGGGATGTGA-
mir-192
(M.m./H.s.; 6) -CTGACCTATGAATTGACA------
Cluster 22
mir-62
(C.e.; 1) TGATATGTAATCTAGCT-TAC--
mir-62
(C.e.; 2) TGATATGTAATCTAGCT-TACAG
mir-9
(M.m.; 4) TCTTTGGTTATCTAGCTGTATGA
mir-9
(D.m.; 3) TCTTTGGTTATCTAGCTGTATGA
Cluster 23
mir-1
(C.e.; 1) TGGAATGTAAAGAAGTATG----
mir-1
(D.m.; 3) TGGAATGTAAAGAAGTATGGAG-
mir-1
(C.e.; 2) TGGAATGTAAAGAAGTATGTA--
mir-1d
(M.m.; 4) TGGAATGTAAAGAAGTATGTATT
mir-1c
(M.m.; 4) TGGAATGTAAAGAAGTATGTAC-
mir-1b
(M.m.; 4) TGGAATGTAAAGAAGTATGTAA-
mir-206
(M.m./H.s.; 6) TGGAATGTAAGGAAGTGTGTGG-
Cluster 24
mir-30a-asb
(M.m.; 4) --------CTT-TCAGTCGGATGTTTGCAGC
mir-30
(H.s.; 3) --------CTT-TCAGTCGGATGTTTGCAGC
mir-21
(H.s.; 3) -----TAGCTTATCAGACTGATGTTGA----
mir-21
(H.s.; 5) -----TAGCTTATCAGACTGATGTTGAC---
mir-21
(M.m.; 4) -----TAGCTTATCAGACTGATGTTGA----
mir-59
(C.e.; 2) TCGAATCGTTTATCAGGATGATG--------
Cluster 25
mir-30b
(M.m.; 4) TGTAAACATCCTACACTC--AGC
mir-30c
(M.m.; 4) TGTAAACATCCTACACTCTCAGC
mir-30a-s/mir-97
(M.m.; 4) TGTAAACATCCTCGACTGGAAGC
mir-97
(H.s.; 5) TGTAAACATCCTCGACTGGAAGC
mir-30d
(M.m.; 4) TGTAAACATCCCCGACTGGAAG-
Cluster 26
mir-183
(M.m./H.s.; 6) ---TATGGCACTGGTAGAATTCACTG-
mir-174
(M.m./H.s.; 7) ---TATGGCACTGGTAGAATTCACT--
mir-182
(M.m./H.s.; 6) ---TTTGGCAATGGTAGAACTCACA--
mir-228 ---AATGGCACTGCATGAATTCACGGC
mir-263 GTTAATGGCACTGGAAGAATTCAC---
Cluster 27
mir-123
(M.m.; 4) -CATTATTACTTTTGG-TACGCG---
mir-137
(M.m.; 4) ----TATTGCTTAAGAATACGCGTAG
mir-12
(D.m.; 3) TGAGTATTACATCAGG-TACTGGT--
Cluster 28
mir-50
(C.e.; 2) TGATATGTCTGGTATTCTTGGGTT-
mir-190
(M.m./H.s.; 6) TGATATGTTTGATATA-TTAGGT--
mir-90
(C.e.; 1) TGATATGTT--GTTTGAATGCCCC-
Cluster 29
mir-196b
(M.m./H.s.; 7) TAAGGGCTGGGTCGGTCGGGCT
mir-196c
(M.m./H.s.; 7) ---GGGCTGGG-CGGTCGGGC-
mir-196a
(M.m./H.s.; 7) TAAGGGCTGGGCCGGTCGGGCT
Cluster 30
mir-208
(M.m./H.s.; 6) --ATAAGACGAGCAAAAAGCTTGT
mir-184
(M.m./H.s.; 7) ATGCAAGTCGAGCTTGAAGTTTC-
Cluster 31
mir-155
(M.m.; 4) ---TTAATGCTAATTGTGATAGGGG
mir-5
(D.m.; 3) AAAGGAACGATCGTTGTGATATG--
Cluster 32
mir-196
(M.m./H.s.; 6) -TAGGTAG--T---TTCATGTTGTTGG
mir-48
(C.e.; 2) TGAGGTAGGCTCAGTAGATGCGA----
Cluster 33
mir-77
(C.e.; 2) TTCATCAGGCCATAGCTGTCCA
mir-176
(M.m./H.s.; 7) ---GGACTGCCTCAGCTGTGC-
Cluster 34
mir-86
(C.e.; 2) ---TAAGTGAATGCTT-TGCCACAGTC
mir-147
(M.m.; 4) GTGTGTGGAAATGCTTCTGCC------
Cluster 35
mir-190
(M.m./H.s.; 7) TACCGCATAATGTTGAAAG-ATGG----
mir-192
(M.m./H.s.; 7) ------ATAACGTTGAAAG-ATGGCATC
mir-142-s
(M.m.; 4) -----CATAAAGTAGAAAGCACTAC---
Cluster 36
mir-46
(C.e.; 2) TGTCATGGAGTCGCTCTCTTCA
mir-47
(C.e.; 2) TGTCATGGAGGCGCTCTCTTCA
Cluster 37
mir-44
(C.e.; 2) TGACTAGAGACAC-ATTCAGCT
mir-61
(C.e.; 2) TGACTAGAACCGTTACTCATC-
Cluster 38
mir-68
(C.e.; 2) TCGAAGACTC---AAAAGTGTAGA
mir-69
(C.e.; 2) TCGAAAATTA---AAAAGTGTAGA
mir-67
(C.e.; 2) TCACAACCTCCTAGAAAGAGTAGA
Cluster 39
mir-3
(D.m.; 3) TCACTGGGCAAAGTGTGTCTCA-
mir-87
(C.e.; 1) ---GTGAGCAAAGTTTCAGGTGT
Cluster 40
mir-105
(H.s.; 5) TCAAATGCTCAGACT-CCTGT-
mir-199-s
(M.m./H.s.; 6) CCCAGTGTTCAGACTACCTGTT
Cluster 41
mir-88
(C.e.; 1) ---TCTTTGACGTCGGGACTGGAG
mir-186
(M.m./H.s.; 7) CGGCCTTAGTCGTCGGGG-TGATT
Cluster 42
mir-95
(H.s.; 5) TTCAACGGGTATTTATTGAGCA--
cp-mir-264 ---GGCGGGTGGTTGTTGT-TATG