AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00720_synecho_reg_100.orf -o00720_synecho_100.ace -a/home/amcguire/alignace/lib/ORF_synecho.txt -z/skink1/amcguire/genomes/synecho.fna -g0.48 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.48 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 sll1682 221 alanine dehydrogenase. [EC:1.4.1.1] #2 slr1290 63 hypothetical 21.6 kD protein slr1290. [SP:YC90_SYNY3] #3 sll1201 225 hypothetical protein. #4 sll1022 146 hypothetical protein. #5 slr1233 47 frdA; succinate dehydrogenase flavoprotein subunit. [EC:1.3.99.1] #6 ssr2049 51 bchB; protochlorophillide reductase 57 kD subunit. #7 slr1234 45 hypothetical hit-like protein slr1234. [SP:YHIT_SYNY3] #8 slr1235 36 hypothetical protein. #9 slr1236 66 hypothetical protein. #10 ssl2250 221 glycoprotein 64. #11 sll1625 293 sdhB; succinate dehydrogenase iron- sulphur protein subunit. #12 sll1557 104 sucD; succinyl-CoA synthetase. [EC:6.2.1.5] #13 sll0920 300 ppc; phosphoenolpyruvate carboxylase. [EC:4.1.1.31] #14 slr0018 55 fumC; fumarase. [EC:4.2.1.2] #15 sll0010 192 hypothetical protein. #16 sll0542 245 acs; acetyl-coenzyme A synthetase. [EC:6.2.1.1] #17 sll0823 166 sdhB; succinate dehydrogenase iron-sulfur protein. [EC:1.3.99.1] #18 slr0301 261 ppsA; phosphoenolpyruvate synthase (pyruvate,water dikinase) (PEP #19 slr0665 229 acnB; aconitate hydratase 2 (citrate hydro-lyase 2) (aconitase 2). Motif number 1 TGCTAACATTGGGGGTCAACATCGATCACG 1 40 0 GGGGGTCAAC 0.983032 -182 ATCCATAGTTGGGGTTCTAGTCCATGGCAT 1 142 1 GGGGTTCTAG 0.886217 -80 GTGGATCTATGGCGATCGCCTTTAGGATT 2 45 1 GGCGATCGCC 0.499832 -19 CCAATTTTCTGGCGATCGCCTGGCGGATCT 3 179 1 GGCGATCGCC 0.499832 -47 CGGGGATCAACGGCGATCGCT 4 2 1 GGGGATCAAC 0.98399 -145 GGGGATCAACGGCGATCGCTACTGATAGGG 4 12 1 GGCGATCGCT 0.572793 -135 CTTTGGTGATGGGGGTCTACCCCCCTATCA 4 34 0 GGGGGTCTAC 0.983032 -113 GGCAAACGGTGGGGATCAACCCCAAACCAT 8 11 1 GGGGATCAAC 0.98399 -26 TTACTTTTGCCGGGGTCTACCCCCTATAGC 10 63 0 CGGGGTCTAC 0.893134 -159 GGATTTTAGGGGCGATCGCCTTGGGAATTT 11 119 1 GGCGATCGCC 0.499832 -175 ACAATTCTAGGGGGTTCTCGACAAAAAAAG 11 204 1 GGGGTTCTCG 0.874171 -90 CCGCAGCTATCGGGGTCAACCAGTCCAAGC 12 44 0 CGGGGTCAAC 0.893134 -61 CTGCGGAGTAGGGCATCAAGCCACAGTTTT 12 68 1 GGGCATCAAG 0.874359 -37 AATCTGGGAGGGGCATCGACAAATCGCTGG 13 174 1 GGGCATCGAC 0.977963 -127 ACATAGTGGGGGGCGGCGACCTGGATTACA 15 86 0 GGGCGGCGAC 0.828857 -107 TTACCCTGGGGGCGATCTAGGATAGAAGAA 16 116 0 GGCGATCTAG 0.900367 -130 TCAGTTAAAGGGGCTTCGCCCGGCAAAACC 18 11 0 GGGCTTCGCC 0.933936 -251 ********** Masking position 2 Map Score: 28.4331 Number of sites scoring better than the average of aligned sites = 6481 Number in coding regions = 5886 Number in noncoding regions = 595 Number of orfs with sites within 600 bp upstream = 377 Fraction of orfs with sites within 600 bp upstream = 0.0605525 Motif number 2 AATCCAAAATTATTGAGAGGTTTGCCTTGCTAACAT 1 61 0 TTGGTTTGCC 0.964502 -161 TTGAGAATTTTTTTTGAGATTTTCCCTATAGAAGTC 3 69 1 TTTTTTTCCC 0.958221 -157 TCGCCTAACCTTGTTAAATTTTTGCCAATTTTCTGG 3 155 1 TGTTTTTGCC 0.980142 -71 AAACAATTTTTTGGGGCCGGTTTGCCGTAGGTGCAA 10 113 0 TGGGTTTGCC 0.970607 -109 CCCCCTAGAATTGTGCCTATTTTCCCAAGTCTTTGA 11 182 0 TGGTTTTCCC 0.983341 -112 TCATCTATGGTTGCGGTGATTTTGGCTTTTAGTGTC 13 87 1 TGGTTTTGGC 0.904123 -214 AACGATGTAATTTTGGAATTTTTCCCGGTCATCTAG 15 51 0 TTGTTTTCCC 0.979826 -142 TCCGATGTTTTCTTGATCTTTTCCCCACTGTCCAAT 16 56 1 TTGTTTCCCC 0.938818 -190 TTTGTAACCTTTTGTATTTCTTTGCCTCTGCTGTTT 16 144 0 TTTCTTTGCC 0.874557 -102 GTCGCAAAAATTTTTCCCCTTTCCCCAGATTTGTAA 16 173 0 TTTTTTCCCC 0.878728 -73 TCCCCATTGATCTATGGAATTTTGCCGGGACCAGGA 17 67 1 TTTTTTTGCC 0.975968 -100 AATAGGAAGGTCGAGCCTTTTTTGCCCTGTTGATTT 17 132 1 TGGTTTTGCC 0.990523 -35 GAAGGGGCTGTATTTATGGTTTAGCCTTAGTCGGCA 18 220 1 TTTTTTAGCC 0.824682 -42 GAAATGGTGTTTATTTTGCCGACTAAGGCT 18 242 0 TGGTTTTGCC 0.990523 -20 * * * ******* Masking position 11 Map Score: 18.5132 Number of sites scoring better than the average of aligned sites = 597 Number in coding regions = 519 Number in noncoding regions = 78 Number of orfs with sites within 600 bp upstream = 95 Fraction of orfs with sites within 600 bp upstream = 0.0152586 Motif number 3 AATCAAACATTTCCACCGATGCCATGGACTAG 1 158 0 TTCCCCATGC 0.693906 -64 GTCGGCATAGTATCCCCCTTGCAGAGATTGGT 1 200 1 TATCCCTTGC 0.659256 -22 CTAGGTTTTTCCTCGCCTAACCTTGTTAAATT 3 143 1 CCTCCCAACC 0.963112 -83 GGTAGACCCCCATCACCAAAGCCCCCAATAAT 4 43 1 CATCCCAAGC 0.918969 -104 GTTCCAGTCATACCATCTTCCCTCATTATTGG 4 67 0 TACCTCTCCC 0.535441 -80 CTCTGCAGGCCTCCACCTTCCCCT 4 133 1 CTCCCCTCCC 0.956333 -14 CGGTGGGGATCAACCCCAAACCATAGGGGA 8 17 1 CAACCCAACC 0.755219 -20 GCGCCACTACCTTCGTCAAACCCTGGAAACTT 13 23 1 CTTCTCAACC 0.941661 -278 AGTCCATTGTCTTCTTCCTCCCCCTGCTCCAG 13 125 1 CTTCTCTCCC 0.909987 -176 GGTTACTGCACTTCTCCATACCAACGGGTAGA 15 131 1 CTTCCCTACC 0.981246 -62 TACTAGTTTCCTTCTTCTATCCTAGATCGCCC 16 105 1 CTTCTCATCC 0.90202 -141 CGCAAAAATTTTTCCCCTTTCCCCAGATTTGT 16 175 0 TTTCCCTTCC 0.888485 -71 GCCCTGTTGATTTCCTCATACC 17 155 1 TTTCTCTACC 0.828414 -12 TGCATTTTAACCCCTCCTTACCCTTGGAATTG 18 175 1 CCCCCCTACC 0.956333 -87 ATAAATACAGCCCCTTCTTTCCCGCTGGTTCA 18 205 0 CCCCTCTTCC 0.811926 -57 TGAAACAAAGCTTCTCCAAAGCATAGACACAA 19 89 0 CTTCCCAAGC 0.952117 -141 CACCCCTTATCATCACCGAAGCAGAATATTTT 19 149 0 CATCCCAAGC 0.918969 -81 **** ** **** Masking position 7 Map Score: 16.3194 Number of sites scoring better than the average of aligned sites = 1683 Number in coding regions = 1521 Number in noncoding regions = 162 Number of orfs with sites within 600 bp upstream = 193 Fraction of orfs with sites within 600 bp upstream = 0.030999 Motif number 4 TTGCCTTGCTAACATTGGGGGTCAACATCG 1 46 0 AACATTGGGG 0.917717 -176 CGGGGATCAACGGCGATCGCTACTG 4 6 1 ATCAACGGCG 0.896407 -141 ATCTTCCCTCATTATTGGGGGCTTTGGTGA 4 55 0 ATTATTGGGG 0.836178 -92 AGATTAACTTACCAACGGGGCTAAG 6 37 1 ACCAACGGGG 0.992974 -15 TCAACCCCAAACCATAGGGGA 8 26 1 ACCATAGGGG 0.909793 -11 TTCATTATGCATCAACAGGGCAGAAAAAAC 10 145 0 ATCAACAGGG 0.946373 -77 AAAAAAAGCCAGCAACGGGGTCTTAATCTA 11 226 1 AGCAACGGGG 0.970069 -68 CTACTCCGCAGCTATCGGGGTCAACCAGTC 12 49 0 GCTATCGGGG 0.73933 -56 ACCATCGTAAAACATTAGGGGAACTTCGCC 15 22 1 AACATTAGGG 0.689486 -171 ACTTCTCCATACCAACGGGTAGATGCACTG 15 140 1 ACCAACGGGT 0.902949 -53 ATTTGCTGGGACTAATGGGGATAAAATTTA 17 16 1 ACTAATGGGG 0.927211 -151 AATTCCATAGATCAATGGGGAATTGTAGGA 17 58 0 ATCAATGGGG 0.975682 -109 GTATGAGGAAATCAACAGGGCAAAAAAGGC 17 146 0 ATCAACAGGG 0.946373 -21 ********** Masking position 4 Map Score: 14.331 Number of sites scoring better than the average of aligned sites = 1254 Number in coding regions = 1127 Number in noncoding regions = 127 Number of orfs with sites within 600 bp upstream = 142 Fraction of orfs with sites within 600 bp upstream = 0.0228076 Motif number 5 TTTCTGGCGATCGCCTGGCGGATCTCTAGG 3 184 1 TCGCCTGGCG 0.966941 -42 ATAGGGGGTAGACCCCGGCAAAAGTAACTT 10 66 1 GACCCCGGCA 0.805803 -156 CATGGGTTAATGCCCAGGGGGCAGCGAATG 11 58 0 TGCCCAGGGG 0.886183 -236 TTAGGGGCGATCGCCTTGGGAATTTTAGTG 11 124 1 TCGCCTTGGG 0.881996 -170 AGGAAATACCCTGGGAAAAGCAATAT 11 278 0 TACCCTGGGA 0.982243 -16 TCGCTGGCTGTAGCCTGGGATGCGGAGTGA 13 197 1 TAGCCTGGGA 0.976002 -104 CTCTGCTGTTTACCCTGGGGGCGATCTAGG 16 125 0 TACCCTGGGG 0.98484 -121 TAAAGGGGCTTCGCCCGGCAAAACC 18 6 0 TCGCCCGGCA 0.929045 -256 GTCAAAGACTTGCCCTGGCAATCATCCAAA 18 91 1 TGCCCTGGCA 0.944768 -171 AACCCCTCCTTACCCTTGGAATTGAACCAG 18 183 1 TACCCTTGGA 0.912241 -79 ********** Masking position 5 Map Score: 9.36155 Number of sites scoring better than the average of aligned sites = 1340 Number in coding regions = 1217 Number in noncoding regions = 123 Number of orfs with sites within 600 bp upstream = 144 Fraction of orfs with sites within 600 bp upstream = 0.0231288 Motif number 6 GCAAACCTCTCAATAATTTTGGATTTTGTT 1 72 1 CAATAATTTT 0.929409 -150 AGAAAATTGGCAAAAATTTAACAAGGTTAG 3 159 0 CAAAAATTTA 0.7715 -67 TTAATAAATGCCAATATTTTACGTTTTTTT 14 27 1 CCAATATTTT 0.767939 -29 ATGATTGTCGCAAAAATTTTTCCCCTTTCC 16 185 0 CAAAAATTTT 0.914388 -61 GGGCCGGGGGCAATAATTTTTATTCCTGGT 17 96 0 CAATAATTTT 0.929409 -71 CCATTACTTCCCATAATTTTCTCTGCGGGA 18 60 1 CCATAATTTT 0.962781 -202 TGGCAATCATCCAAAATTTAAAGGTTTTTA 18 106 1 CCAAAATTTA 0.869023 -156 TTATGGCTCACCTTAATTTTGACTATTCAT 19 187 0 CCTTAATTTT 0.803067 -43 AAAAGGCCCACCATAATTTTACGGC 19 215 1 CCATAATTTT 0.962781 -15 ********** Masking position 6 Map Score: 8.49457 Number of sites scoring better than the average of aligned sites = 207 Number in coding regions = 158 Number in noncoding regions = 49 Number of orfs with sites within 600 bp upstream = 61 Fraction of orfs with sites within 600 bp upstream = 0.00979762 Motif number 7 TGCTTATATCTTTTCAGCCTAATACTCAAT 9 26 0 TTTTCAGCCT 0.936562 -41 AAAAATTGTTTTTTCTGCCCTGTTGATGCA 10 138 1 TTTTCTGCCC 0.978961 -84 CCATGACTACTTTTCACCCAGTCCTAGAGC 11 14 0 TTTTCACCCA 0.853863 -280 CCAGGGGTTTTTTTCTGCCCTAATCTGGGA 13 153 1 TTTTCTGCCC 0.978961 -148 CCCCCTTAAATTTTATCCCCATTAGTCCCA 17 22 0 TTTTATCCCC 0.967036 -145 GGGCAATAATTTTTATTCCTGGTCCCGGCA 17 89 0 TTTTATTCCT 0.687244 -78 AGGTCGAGCCTTTTTTGCCCTGTTGATTTC 17 139 1 TTTTTTGCCC 0.899159 -28 ATTTAAAGGTTTTTAACCCTTGCCCAAAAT 18 121 1 TTTTAACCCT 0.902985 -141 ATTGACTGCATTTTAACCCCTCCTTACCCT 18 169 1 TTTTAACCCC 0.959696 -93 ********** Masking position 4 Map Score: 6.95209 Number of sites scoring better than the average of aligned sites = 429 Number in coding regions = 371 Number in noncoding regions = 58 Number of orfs with sites within 600 bp upstream = 68 Fraction of orfs with sites within 600 bp upstream = 0.0109219 Motif number 8 TTGGTGATGGGGGTCTACCCCCCTATCAGT 4 32 0 GGGTCTACCC 0.851558 -115 CAAACGGTGGGGATCAACCCCAAACCATAG 8 13 1 GGATCAACCC 0.95685 -24 ACTTTTGCCGGGGTCTACCCCCTATAGCCC 10 61 0 GGGTCTACCC 0.851558 -161 TGCCCCCTGGGCATTAACCCATGGAAAGTA 11 65 1 GCATTAACCC 0.923814 -229 GCAGCTATCGGGGTCAACCAGTCCAAGCTT 12 42 0 GGGTCAACCA 0.892836 -63 GCGGAGTAGGGCATCAAGCCACAGTTTTCC 12 70 1 GCATCAAGCC 0.915007 -35 AGATACTACGGGATTATCCCTACCTCACTC 13 221 0 GGATTATCCC 0.794669 -80 CCATAGCAGTGCATCTACCCGTTGGTATGG 15 146 0 GCATCTACCC 0.975833 -47 ********** Masking position 4 Map Score: 8.80776 Number of sites scoring better than the average of aligned sites = 184 Number in coding regions = 163 Number in noncoding regions = 21 Number of orfs with sites within 600 bp upstream = 27 Fraction of orfs with sites within 600 bp upstream = 0.00433665 Motif number 9 TTTGTTTGAAGCTAAGGGAAG 5 37 1 GCTAAGGGAG 0.983053 -11 TTAGTGGCAGGCTTAGTGATGTTGCTCAATG 11 148 1 GCTTAGTGTG 0.89974 -146 GCCCCTCCCAGATTAGGGCAGAAAAAAACCC 13 157 0 GATTAGGGAG 0.913085 -144 TAGATGCACTGCTATGGGATGCATCCGAAAT 15 159 1 GCTATGGGTG 0.983053 -34 GAGTGAATGGGCTATGGGCTGCGTGTAAAGG 16 24 1 GCTATGGGTG 0.983053 -222 CTTCGGTGATGATAAGGGGTGAATTAAATGA 19 160 1 GATAAGGGTG 0.973384 -70 ******** ** Masking position 3 Map Score: 3.0983 Number of sites scoring better than the average of aligned sites = 116 Number in coding regions = 93 Number in noncoding regions = 23 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 10 GATAGAGCCCATTCTCTGACTTCTATAGGG 3 92 0 ATTCTCTGAC 0.932754 -134 ATGTGAATAAGTTCTTTGACCTAGGTTTTT 3 123 1 GTTCTTTGAC 0.932753 -103 TATTTTCCCAAGTCTTTGACACCATTGAGC 11 171 0 AGTCTTTGAC 0.985791 -123 AAGCCATTAAAGACTTTGACGGAGAACC 16 228 1 AGACTTTGAC 0.954723 -18 TGCCAGGGCAAGTCTTTGACATCCCGCAGA 18 81 0 AGTCTTTGAC 0.985791 -181 ********** Masking position 5 Map Score: 2.2049 Number of sites scoring better than the average of aligned sites = 30 Number in coding regions = 23 Number in noncoding regions = 7 Number of orfs with sites within 600 bp upstream = 7 Fraction of orfs with sites within 600 bp upstream = 0.00112432 Motif number 11 CGCTTAGATCAACAAAATCCAAAATTATTGA 1 81 0 AAAAAATCCA 0.944548 -141 TTAGCTTCAAACAAAAATACAAGGAGATTCT 5 21 0 ACAAAATACA 0.586056 -27 GGCGATCGCCCCTAAAATCCAATCTAAATTA 11 108 0 CCAAAATCCA 0.804497 -186 GGTTCTCGACAAAAAAAGCCAGCAACGGGGT 11 216 1 AAAAAAGCCA 0.940933 -78 ACTTTAGCTTACTAAACGCCACTATTTAGTT 13 51 1 ACAAACGCCA 0.900199 -250 GGACTAGGACACTAAAAGCCAAAATCACCGC 13 99 0 ACAAAAGCCA 0.948594 -202 TGGTGACGCTAACAACATCCAGAATGCGTTG 13 261 0 AAAACATCCA 0.745167 -40 CCATTCTATTAATAAATGCCAATATTTTACG 14 19 1 AAAAATGCCA 0.878243 -37 AGATGACCGGGAAAAATTCCAAAATTACATC 15 53 1 GAAAATTCCA 0.747487 -140 CCTGGTCCCGGCAAAATTCCATAGATCAATG 17 71 0 GCAAATTCCA 0.77422 -96 TAGTCGGCAAAATAAACACCATTTC 18 247 1 AAAAACACCA 0.598731 -15 TTCAAGACGAAATAAAATCCTTTCCTGGTAA 19 117 1 AAAAAATCCT 0.663633 -113 ** ******** Masking position 5 Map Score: 3.76124 Number of sites scoring better than the average of aligned sites = 511 Number in coding regions = 442 Number in noncoding regions = 69 Number of orfs with sites within 600 bp upstream = 80 Fraction of orfs with sites within 600 bp upstream = 0.0128493 Motif number 12 TTGCCTTGCTAACATTGGGGGTCAACATCG 1 46 0 AACATTGGGG 0.865911 -176 ATGACCAATCCATAGTTGGGGTTCTAGTCC 1 135 1 CATAGTTGGG 0.624038 -87 TGTTTGATTTAATAGGGGTGTCGGCATAGT 1 181 1 AATAGGGGTG 0.762108 -41 GATCGCTACTGATAGGGGGGTAGACCCCCA 4 25 1 GATAGGGGGG 0.964227 -122 ATCTTCCCTCATTATTGGGGGCTTTGGTGA 4 55 0 ATTATTGGGG 0.760419 -92 GGCAAACGGTGGGGATCAACCCCA 8 5 1 AACGGTGGGG 0.779901 -32 TAGATTGGATTTTAGGGGCGATCGCCTTGG 11 113 1 TTTAGGGGCG 0.602948 -181 TGGGAAAAGCAATATGGGCGGAGGCTACCT 11 263 0 AATATGGGCG 0.82775 -31 GTTTGACGAAGGTAGTGGCGCACTTGGGCG 13 14 0 GGTAGTGGCG 0.878161 -287 ACAAAAACTAAATAGTGGCGTTTAGTAAGC 13 57 0 AATAGTGGCG 0.957926 -244 GCTTTGAAGACATAGTGGGGGGCGGCGACC 15 95 0 CATAGTGGGG 0.961833 -98 GGGTTAATTGGACAGTGGGGAAAAGATCAA 16 68 0 GACAGTGGGG 0.948799 -178 ACACAATCACTGTATTGGGGAGACTGAAGA 19 65 0 TGTATTGGGG 0.642514 -165 ********** Masking position 8 Map Score: 5.7806 Number of sites scoring better than the average of aligned sites = 1014 Number in coding regions = 890 Number in noncoding regions = 124 Number of orfs with sites within 600 bp upstream = 134 Fraction of orfs with sites within 600 bp upstream = 0.0215226 Motif number 13 TTAATGCCCAGGGGGCAGCGAATGATTTGG 11 52 0 GGGGGCAGCG 0.966673 -242 CCGATAGCTGCGGAGTAGGGCATCAAGCCA 12 61 1 CGGAGTAGGG 0.820929 -44 AAGAAGACAATGGACTAGGACACTAAAAGC 13 111 0 TGGACTAGGA 0.761602 -190 AAAAAACCCCTGGAGCAGGGGGAGGAAGAA 13 136 0 TGGAGCAGGG 0.975872 -165 GGATGCGGAGTGAGGTAGGGATAATCCCGT 13 214 1 TGAGGTAGGG 0.841221 -87 ATTAATAGAATGGGGCAGGAC 14 2 0 TGGGGCAGGA 0.951749 -54 AGACATAGTGGGGGGCGGCGACCTGGATTA 15 88 0 GGGGGCGGCG 0.83276 -105 TCCGAGTGAATGGGCTATGGGCTGCGTGTA 16 21 1 TGGGCTATGG 0.696419 -225 TTACAAATCTGGGGAAAGGGGAAAAATTTT 16 173 1 GGGGAAAGGG 0.712571 -73 GAATTTTGCCGGGACCAGGAATAAAAATTA 17 83 1 GGGACCAGGA 0.875013 -84 TGGTTCATTTTGGGCAAGGGTTAAAAACCT 18 127 0 TGGGCAAGGG 0.94486 -135 CCCTTGGAATTGAACCAGCGGGAAAGAAGG 18 195 1 TGAACCAGCG 0.620563 -67 ********** Masking position 2 Map Score: 5.11324 Number of sites scoring better than the average of aligned sites = 3290 Number in coding regions = 2939 Number in noncoding regions = 351 Number of orfs with sites within 600 bp upstream = 356 Fraction of orfs with sites within 600 bp upstream = 0.0571796 Motif number 14 TGACTTCTATAGGGAAAATCTCAAAAAAAA 3 76 0 AGGGAAAATC 0.870377 -150 AGGTTAGGCGAGGAAAAACCTAGGTCAAAG 3 136 0 AGGAAAAACC 0.961005 -90 AGAGATAGACCGGAAAAACCAGGACTCAGC 4 107 0 CGGAAAAACC 0.97065 -40 TCAAAATTTACGGAAAAGTCCTT 10 209 1 CGGAAAAGTC 0.822725 -13 AGGAAATACCCTGGGAAAAG 11 284 0 AGGAAATACC 0.757945 -10 GGACACTAAAAGCCAAAATCACCGCAACCA 13 94 0 AGCCAAAATC 0.773753 -207 ATTCACTCGGAGGATAAATCT 16 2 0 AGGATAAATC 0.820029 -244 TTCCTGGTCCCGGCAAAATTCCATAGATCA 17 74 0 CGGCAAAATT 0.774446 -93 GGGCTTCGCCCGGCAAAACC 18 1 0 CGGCAAAACC 0.981392 -261 TTGCCGACTAAGGCTAAACCATAAATACAG 18 227 0 AGGCTAAACC 0.906986 -35 TAGCCTTAGTCGGCAAAATAAACACCATTT 18 241 1 CGGCAAAATA 0.774446 -21 ********** Masking position 6 Map Score: 6.52513 Number of sites scoring better than the average of aligned sites = 1112 Number in coding regions = 995 Number in noncoding regions = 117 Number of orfs with sites within 600 bp upstream = 127 Fraction of orfs with sites within 600 bp upstream = 0.0203983 Motif number 15 ACCAATCTCTGCAAGGGGGATACTA 1 207 0 TCTCTGCAAG 0.973593 -15 AAAAACCAGGACTCAGCAAGGTTTAGTTCC 4 94 0 ACTCAGCAAG 0.973593 -53 TTCCGGTCTATCTCTGCAGGCCTCCACCTT 4 122 1 TCTCTGCAGG 0.968319 -25 ATTGAGAACCATTCAGCAAGATAGTGCATA 10 16 1 ATTCAGCAAG 0.925694 -206 TGCATCCGAAATACAGCAAGGGAAA 15 178 1 ATACAGCAAG 0.754505 -15 CCCATAATTTTCTCTGCGGGATGTCAAAGA 18 69 1 TCTCTGCGGG 0.917872 -193 ********** Masking position 6 Map Score: 0.344163 Number of sites scoring better than the average of aligned sites = 36 Number in coding regions = 25 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555