AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00790_synecho_reg_300.orf -o00790_synecho_300.ace -a/home/amcguire/genomes/ORF_synecho.txt -z/home/amcguire/genomes/synecho.fna -g0.48 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.48 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: slr0220 175 glyS; glycyl-tRNA synthetase beta chain (glycine--tRNA ligase beta slr1196 27 hypothetical protein. slr1923 25 frhB; coenzyme F420 hydrogenase beta subunit (8-hydroxy-5- Input sequences: #1 sll1045 96 mutT; mutator MutT protein. [EC:3.6.1.-] #2 sll1043 127 pnp; polyribonucleotide nucleotidyltransferase. [EC:2.7.7.8] #3 sll0716 202 lepB; leader peptidase I. [EC:3.4.21.89] #4 sll0712 112 cysM; cysteine synthase. [EC:4.2.99.8] #5 sll0711 98 hypothetical protein. #6 sll0710 40 hypothetical protein. #7 sll0709 300 llaI.2; 2nd component required for LlaI restriction activity. #8 sll0222 74 phoA; alkaline phosphatase. [EC:3.1.3.1] #9 sgl0002 42 bcp; hypothetical protein. #10 sml0004 164 ycf6; hypothetical protein. #11 slr0254 29 bcp; hypothetical protein. #12 sll0221 125 bcp; bacterioferritin comigratory protein. #13 sll0220 300 glmS; glucosamine--fructose-6-phosphate aminotransferase #14 slr1093 164 folK; 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphoki nase. #15 tRNA-Pro-1 79 tRNA-Pro. #16 sll1039 181 hypothetical protein. #17 slr1095 86 hypothetical protein. #18 slr1097 57 hypothetical protein. #19 slr1098 67 hypothetical protein. #20 slr1099 300 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase. [EC:4.1.1.-] #21 sll0931 171 hypothetical protein. [EC:2.1.1.45] #22 sll0930 43 hypothetical protein. #23 sll0928 111 apcD; allophycocyanin-B. #24 sll0927 168 metX; S-adenosylmethionine synthetase. [EC:2.5.1.6] #25 sll0925 266 hypothetical 23.0 kD protein sll0925. [SP:Y925_SYNY3] #26 slr0974 300 infC; translation initiation factor IF-3. [SP:IF3_SYNY3] #27 sll0654 300 alkaline phosphatase. [EC:3.1.3.1] #28 sll1920 188 pacS; cation-transporting ATPase pacs. [EC:3.6.1.-] [SP:ATCS_SYNY3] #29 slr2023 281 fabD; malonyl CoA-acyl carrier protein transacylase (MCT). #30 slr2024 66 regulatory component of sensory transduction system. #31 slr2025 92 hypothetical protein. #32 sll1916 39 hypothetical protein. #33 sll1915 169 hypothetical protein. #34 sll1913 60 hypothetical protein. #35 ssl3615 208 hypothetical protein. #36 sll1911 128 hypothetical protein. #37 sll1910 300 zam; acetazolamide conferring resistance protein zam. [SP:ZAM_SYNY3] #38 sll1121 98 putative DNA helicase. [EC:3.6.1.-] #39 sll1120 194 chromosome segregation protein SMC1. #40 sll1119 142 hypothetical protein. #41 slr1194 153 hypothetical protein. #42 slr1195 28 hypothetical protein. #43 slr1197 42 hypothetical protein. #44 sll1118 46 hypothetical protein. #45 ssr2009 198 hypothetical protein. #46 slr1198 103 rehydrin. #47 slr1199 184 mutL; DNA mismatch repair protein MutL. #48 slr1200 97 livM; high-affinity branched-chain amino acid transport permease #49 slr1201 115 hypothetical protein. #50 slr1202 109 malF; putative maltose transport permease protein. #51 slr1203 105 hypothetical protein. #52 slr1204 47 htrA; serine protease HtrA. [EC:3.4.21.-] #53 slr1205 273 hypothetical protein. #54 slr1206 67 hypothetical protein. #55 slr1207 221 hypothetical protein. #56 ssr2016 251 hypothetical protein. #57 slr1211 91 cobN; CobN protein. #58 slr1212 48 ETR1; ethylene response sensor protein. #59 slr1213 300 LumQ. #60 slr1536 289 recQ; ATP-dependent DNA helicase recQ. [EC:3.6.1.-] [SP:RECQ_SYNY3] #61 slr1537 99 hypothetical protein. #62 slr1538 89 cbiD; CbiD protein. #63 slr1540 73 hypothetical protein. #64 slr1541 111 hypothetical protein. #65 slr1542 105 hypothetical protein. #66 sll1468 300 hypothetical protein. #67 sll1143 165 uvrD; DNA helicase II. [EC:3.6.1.-] #68 sll1142 76 hypothetical protein. #69 slr1223 68 sulA; cell division inhibitor. #70 slr1224 106 malK; putative maltose transport ATP-binding protein. #71 sll1138 111 gph; phosphoglycolate phosphatase. [EC:3.1.3.18] #72 slr1226 212 purC; phosphoribosyl aminoidazole succinocarboxamide synthetase. #73 slr1227 114 IAP75; chloroplast import-associated channel IAP75. #74 slr1228 47 prfC; peptide chain release factor 3 (RF-3). [SP:RF3_SYNY3] #75 slr1229 99 hypothetical protein. #76 sll1135 153 hypothetical protein. #77 slr1232 300 hypothetical protein. #78 sll1614 198 pma1; cation-transporting ATPase pma1. [EC:3.6.1.-] [SP:ATA1_SYNY3] #79 sll1613 248 hypothetical 15.8 kD protein sll1613. [SP:YG13_SYNY3] #80 sll1612 34 folC; folyl-polyglutamate synthetase. [EC:6.3.2.17] #81 sll1611 209 hypothetical protein. #82 slr1716 23 transposase. #83 sll1609 94 hypothetical 20.5 kD protein sll1609. [SP:YG09_SYNY3] #84 sll1608 300 hypothetical protein. #85 sll0809 140 putative lipoate-protein ligase A. [EC:6.-.-.-] #86 tRNA-Gly-1 66 tRNA-Gly. #87 slr0817 68 entC; isochorismate synthase. [EC:5.4.99.6] #88 slr0818 93 hypothetical protein. #89 ssr1391 77 hypothetical protein. #90 slr0820 145 glucosyltransferase. #91 ssl1507 78 transposase. #92 sll0808 300 transposase. #93 slr1627 118 hypothetical 22.0 kD protein slr1627. [SP:YG27_SYNY3] #94 sll1536 135 moeB; molybdopterin biosynthesis MoeB protein. #95 slr1629 124 hypothetical protein. #96 sll1535 99 rfbP; galactosyl-1-phosphate transferase. #97 sll1533 300 pilT; twitching mobility protein. #98 sll1865 300 pfbB; peptide chain release factor. #99 ssl1807 200 hypothetical protein. #100 tRNA-Lys 159 tRNA-Lys. #101 sll0945 203 glgA; glycogen synthase (starch (bacterial glycogen) synthase). #102 sll0944 145 hypothetical protein. #103 slr0320 40 hypothetical protein. #104 sll0306 300 rpoD; RNA polymerase sigma factor. #105 slr0020 100 recG; DNA recombinase. [EC:3.6.1.-] #106 slr0021 65 putative protease slr0021. [EC:3.4.-.-] [SP:Y021_SYNY3] #107 sll0002 226 ponA; penicillin-binding protein 1A. #108 tRNA-Ser-4 225 tRNA-Ser. #109 slr0213 87 guaA; probable GMP synthase (glutamine-hydrolysing) (glutamine #110 sll0210 114 bacA; bacitracin resistance; possibly phosphorylates undecaprenol. #111 slr0216 127 cobU; cobinamide kinase. #112 slr0217 238 hypothetical protein. #113 ssr0349 258 hypothetical protein. #114 sll0209 218 hypothetical protein. #115 sll0208 257 hypothetical protein. #116 sll0207 157 rfbA; glucose-1-phosphate thymidylyltransferase. [EC:2.7.7.24] #117 sll0205 286 hypothetical protein. #118 sll0204 136 gidA; glucose inhibited division protein A. #119 sll0202 129 gidA; glucose inhibited division protein A. [SP:GIDA_SYNY3] #120 sll0200 300 transposase. #121 slr0426 208 folE; GTP cyclohydrolase I (GTP-ch-I). [EC:3.5.4.16] [SP:GCH1_SYNY3] #122 slr0427 36 hypothetical protein. #123 sll0189 26 hypothetical protein. #124 sll0188 196 hypothetical protein. #125 slr0191 36 lytB; amidase enhancer. #126 slr0192 228 hypothetical protein. #127 slr0193 222 RNA-binding protein. #128 slr0194 55 rpiA; ribose 5-phosphate isomerase. [EC:5.3.1.6] #129 slr0195 35 hypothetical protein. #130 slr0197 103 comE ORF1. #131 sll0185 300 hypothetical protein. #132 slr0833 196 dnaB; replicative DNA helicase. [EC:3.6.1.-] [SP:DNAB_SYNY3] #133 slr0835 30 moxR; MoxR. #134 slr0836 66 rfbB; dTDP-glucose 4,6-dehydratase. [EC:4.2.1.46] #135 ssl1552 107 hypothetical protein. #136 sll0830 133 fus; elongation factor EF-G. #137 sll0829 112 rapQ; methyltransferase. [EC:2.1.1.64] #138 slr0839 71 hemH; probable ferrochelatase (protoheme ferro-lyase) (hemE #139 sll0827 266 hypothetical protein. #140 slr0841 300 hypothetical protein. #141 slr0798 26 cadA; cadmium-transporting ATPase. [EC:3.6.1.-] #142 sll0788 221 merR; hypothetical protein. #143 slr0800 180 merR; transposase. #144 sll0785 30 merR; hypothetical protein. #145 sll0784 137 merR; nitrilase. [EC:3.5.5.7] #146 sll0783 300 merR; hypothetical protein. Motif number 1 AACATTTTACGGCGATTGGCGAATCCTAAT 5 18 0 GGCGATTGGC 0.912521 -81 TTTATCTTACGGCGATCGGGCAAAATTTTA 10 102 0 GGCGATCGGG 0.934517 -63 CTAATGATGGCGATCGCCGTCTTGGCTA 13 9 1 GGCGATCGCC 0.499999 -292 TTCCCCCCTGGCGATCGGGTCTTTGTGGA 16 163 0 GGCGATCGGG 0.934517 -19 CCCCCGTCCTGGCGATCGCCCATTGTCTTC 17 65 1 GGCGATCGCC 0.499999 -22 GCTAGCCAATGGCGATCGTAAAGATATTTA 25 188 1 GGCGATCGTA 0.902273 -79 GCTGTCCGTTGGCGATCGCCAGCACCGATT 27 233 1 GGCGATCGCC 0.499999 -68 TCCGGCCAATGGCGATCGCCAAGCGTCGTA 39 97 1 GGCGATCGCC 0.499999 -98 TCTGGGGTAAGGCGATCGCCTTAGGTCAAA 45 174 1 GGCGATCGCC 0.499999 -25 CTCAACGAAGGGCGATTGCCATGGAAACGG 67 70 1 GGCGATTGCC 0.529853 -96 GGTTTGTAGTGGCGATCGCCTGATGTTAGT 78 53 1 GGCGATCGCC 0.499999 -146 TGAACGCAACGGCGATCGTTCATTGCGCCC 89 25 0 GGCGATCGTT 0.844931 -53 TGATCATATTGGCGATCGCCATTTTCCTGG 93 43 1 GGCGATCGCC 0.499999 -76 GGCGATCGGCAGTCAGGAAT 108 1 1 GGCGATCGGC 0.534915 -225 GCAACGGTGGGGCGATCACAATTCTAGGGG 110 17 1 GGCGATCACA 0.826381 -98 TCTACTCAAAGGCGATCGAACAGCAAACAC 112 199 1 GGCGATCGAA 0.867659 -40 AAAGCTTTATGGCGATCGGAGTCGTTAACT 114 155 1 GGCGATCGGA 0.940177 -64 TCTGCGTTTTGGCGATCGCATCTTTTAAGC 120 86 1 GGCGATCGCA 0.534082 -215 CAAACCCTTTGGCGATCGGTGTTAGCCCTG 124 114 0 GGCGATCGGT 0.925207 -83 AAAGCAATCCGGCGATCGCCGAAATCTCTA 127 155 1 GGCGATCGCC 0.499999 -68 GACTCTCTCCGGCGATCGCCCTGGCTCAAG 131 147 1 GGCGATCGCC 0.499999 -154 CAATGGACTAGGCGATCGCCTTTGGTTGAT 134 42 1 GGCGATCGCC 0.499999 -25 GGGCTATTTTGGCGATCGCCCTAAAATTTT 135 88 1 GGCGATCGCC 0.499999 -20 ********** Masking position 6 Map Score: 76.9766 Number of sites scoring better than the average of aligned sites = 5990 Number in coding regions = 5444 Number in noncoding regions = 546 Number of orfs with sites within 600 bp upstream = 338 Fraction of orfs with sites within 600 bp upstream = 0.0542885 Motif number 2 ATTCGATATCTTGGGGGATTTTTTGCTCATT 1 54 1 TTGGGGGATT 0.960161 -43 GGGCTGATGTAGGGGGAATTTCTGCCGCAAT 4 24 0 AGGGGGAATT 0.937544 -89 TTTACGGACGCGGGGGAATTTTGCCCTCTTG 8 31 1 CGGGGGAATT 0.641186 -44 TGATGGTTCCAGGGGAGATTAGCTCGGGCGT 10 51 1 AGGGGAGATA 0.491 -114 CAGCATGGCATTGGGGGATTTAGGAATTGCT 13 114 0 TTGGGGGATT 0.960161 -187 TTCACTATCATTGGGGAATCTCC 13 288 1 TTGGGGAACT 0.818396 -13 CCTAGCCTAGGGGGGGAAATTTC 18 3 0 GGGGGGAATT 0.827296 -55 TCCGGCAAGGTTGGGGGATTTGGACTTACAC 20 225 1 TTGGGGGATT 0.960161 -76 AGAAAAGGGGAAAATTCCCAATAACA 21 156 0 AGGGGAAATT 0.691632 -16 CTGTCCTAGAATGGGGAAATTAGCAGAGCCC 26 13 0 ATGGGGAATT 0.90242 -288 TTTGGGGGTCAGGGGGGCTTTTAAAGCATGT 26 126 0 AGGGGGGCTT 0.912366 -175 CCCCAAATTTAGGGGGAAACTGACTGAAAGT 26 150 1 AGGGGGAACT 0.81373 -151 TCCTTCACCGATGGGGAATTTTGCTGTCCGT 27 211 1 ATGGGGAATT 0.90242 -90 CCTCCCAGTATTGGGGAATTTAGGGGATAAA 29 242 1 TTGGGGAATT 0.939339 -40 AAGGGGGGCTAGGGGGGATTAAGCAGCCAAA 31 51 1 AGGGGGGATA 0.865882 -42 AAGGGGAAACTTGTCCCCCATG 39 2 1 AGGGGAAATT 0.691632 -193 CCACTACGATATGGGGGAATTCCATCATAAT 50 33 1 ATGGGGGATT 0.935038 -77 AGCCCTTGGGGGACATATTGACCCTGA 50 93 0 TGGGGGACTA 0.755805 -17 CCCTCAAACTTTGGGGGATTTTGATTAATCT 53 187 0 TTGGGGGATT 0.960161 -87 ACCAAATGGTTTGGGGGATTACCTAAATTAC 54 38 0 TTGGGGGATA 0.869451 -30 GGCTTCCTTATGGGGGAAACTTTCTTTGCCT 55 69 1 TGGGGGAACT 0.879733 -153 TCTACGTCCATGGGGGGATTACTTTATCTGG 56 121 0 TGGGGGGATA 0.915328 -131 CGTAGAGTTAGGGGGGAAATTTCCGGATAAG 56 146 1 GGGGGGAATT 0.827296 -106 TCACCCATTATTGGGGGATTTAGGGGGCAAA 60 66 0 TTGGGGGATT 0.960161 -224 TCCCCAAGTTTGGGGGAAGTTAAGTAAAAGT 60 96 0 TGGGGGAATT 0.961737 -194 TTGGGGAGCCAGGGGGGCTTTTCAAACACTC 60 120 1 AGGGGGGCTT 0.912366 -170 CTAGGGGATAATGGGAAAGTTGCCATTTGGA 62 26 0 ATGGGAAATT 0.580146 -64 GACCCTGGGGGGAGTAGGAGTAAGTT 68 6 1 TGGGGGGATA 0.915328 -71 GTAGATCCTCTGGGGAACATTGACAGCACAA 68 53 0 TGGGGAACTT 0.625961 -24 TAGAGCGAAATTGGGGGAACTGGCCACGCTT 75 58 0 TTGGGGGACT 0.875218 -42 TCCCTGCCTAGTGGGGGATTTTTCGTGCAGT 78 116 1 GTGGGGGATT 0.821212 -83 AGTTGATACCATGGGGGCGTTTCCTTTGCCC 78 168 1 ATGGGGGCTT 0.86512 -31 TTTACCTGTTTTGGGAAAATTCCGAGCTGAT 81 141 0 TTGGGAAATT 0.698223 -69 CCCTTACTATTGGGGGGCATTGCC 88 4 0 TGGGGGGCTT 0.945748 -90 CCGTTGTCCCTGGGGGGCGCAATGAACGATC 89 11 1 TGGGGGGCCA 0.583665 -67 AATGGGGACATTGGGGACATTATTTAATAGG 97 168 0 TTGGGGACTT 0.873424 -133 CAAAACCCTCTGGGGGAAGCTCAACTACAAT 99 167 0 TGGGGGAACT 0.879733 -34 CAATTAATCAATGGGGAACTATTCTAACAAA 105 41 1 ATGGGGAATA 0.718748 -60 TGCTTAAAAATTGGGGAATTTATTTATGTCT 109 52 1 TTGGGGAATT 0.939339 -36 TTGAGTAGACTGGGGGACACTGGCTGGGCTA 112 177 0 TGGGGGACCT 0.765236 -62 GGTGTTCTAAAGGGGAAAATTTGGATGGCAG 117 222 1 AGGGGAAATT 0.691632 -65 TTGTTTCCTGGGGAGAATTATCTAAAACC 121 190 0 TGGGGAGATT 0.853912 -19 CGCCGCAGGCTAGGGGGATTTGGATAACAAA 132 24 1 TAGGGGGATT 0.575275 -173 TAAGAGATGCTTGGGGGATTAGGTAATTTTG 135 21 1 TTGGGGGATA 0.869451 -87 ACCCCCAATGATGGGGGAATTAGATTATTGC 138 30 0 ATGGGGGATT 0.935038 -42 CATTGGGGGTTTGGGGACTTTCAAAAGTTTT 138 51 1 TTGGGGACTT 0.873424 -21 GGCAGAAGTTTTGGGAGATTAGCTCGGAGTG 139 174 0 TTGGGAGATA 0.498771 -93 ******** ** Masking position 5 Map Score: 65.5399 Number of sites scoring better than the average of aligned sites = 1580 Number in coding regions = 1222 Number in noncoding regions = 358 Number of orfs with sites within 600 bp upstream = 218 Fraction of orfs with sites within 600 bp upstream = 0.0350145 Motif number 3 AGGGCGATGGAAAAAGGGTTTGAA 3 3 1 GGGAGGAAAA 0.955412 -200 TTCTAGCTTTGGGGGAGAAAAAAGGGGATAGA 10 14 1 GGGGGAAAAA 0.782537 -151 TTGTCATTGGGCAGAAGGAAAAAGCTAAACTG 13 238 1 GCGAGGAAAA 0.874102 -63 AGACTACCAGGGAGAAGGAAAAACAGTGAAAA 16 71 0 GGGAGGAAAA 0.955412 -111 CAATACTGCAGGTGAAGCAAAAATAACGGTTT 16 103 0 GGGAGCAAAA 0.967573 -79 CTTTTCTGGCGGCAATGCCAAACTTTGCCCAC 20 88 1 GGAAGCCAAA 0.859316 -213 TAGCCGTTAAGCTAGAGAAAAACCGCCCAGTG 20 129 0 GCAGGAAAAA 0.469123 -172 TCCCTGGTACGGGAACGGAAAGGGCTAAAATT 24 17 0 GGAAGGAAAG 0.849775 -152 ATTGTCAACGGGGAACGAAAAAGCTAAGCTCA 27 64 0 GGAAGAAAAA 0.838361 -237 GGTGACGGAAAAGTCTGGATTT 29 270 0 GGGAGGAAAA 0.955412 -12 GGTCTGGAAGGAAAAGCAAAGATTGCCACTA 35 188 0 GGAAGCAAAG 0.887351 -21 GTGAGCCATGGCAGAGGGCAAATAAACTAGTA 37 99 0 GCGAGGCAAA 0.652211 -202 GAGACAATGGGGCAAAGAAAAATTGCCATTGC 48 66 1 GGAAGAAAAA 0.838361 -32 TGGAAGAAAAGGAAGTGCAAAAAGT 50 4 0 GGAGGCAAAA 0.922426 -106 CGATTGCCATGGAAACGGAAAAGAGCGAAAAA 67 82 1 GGAAGGAAAA 0.941994 -84 AAAATTCCGAGCTGATGCAAAGTGTTAAGAAA 81 125 0 GCGAGCAAAG 0.771049 -85 TCGCAACAATGGCGGGGCAAAATAGAATATGG 87 38 0 GGGGGCAAAA 0.940083 -31 TTTCCCTGGGTAATGGAAAGGGTAGGCTTA 89 58 0 GGAAGGAAAG 0.849775 -20 GAAGGGCTTGGCAAAAGCAAAATTCTAAGGGC 99 70 0 GCAAGCAAAA 0.879915 -131 CAATGCTTGTGGTGAAGCAAAAGCTATGTTAA 100 109 1 GGGAGCAAAA 0.967573 -51 GCGCTAAGATGGGGGCGGAAAATTGCAGAAAT 108 186 1 GGGGGGAAAA 0.91848 -40 GGGTCGGTTAGGGAAGGCAAAAGCCACCACCA 116 27 1 GGAAGCAAAA 0.957652 -131 CCCTCCAGATGGCAGAGCAAAAATGATAGGTT 124 66 0 GGAGGCAAAA 0.922426 -131 GGTGGATACAGGGGGAGCAAAGGTGAATGTTG 131 191 0 GGGGGCAAAG 0.845326 -110 TTCCGCCTTGGCAAAGGCCAAAATTACCTAAT 135 38 0 GCAAGCCAAA 0.664335 -70 GCCTCTAATGGCAAAGGCAAAAACAATTGGGA 139 106 0 GCAAGCAAAA 0.879915 -161 AGTTGGAAATGGCAAAATGCTTGAAT 139 251 0 GGAAGGCAAA 0.814345 -16 ATAGCAAGTAGGAGAAGAAAAAAAGGAAAACT 142 102 0 GGGAGAAAAA 0.872507 -120 ATTCCAGTCTGGCAAAGCAAAATGAAATCAGG 142 171 0 GGAAGCAAAA 0.957652 -51 ** ** ****** Masking position 10 Map Score: 34.0299 Number of sites scoring better than the average of aligned sites = 492 Number in coding regions = 409 Number in noncoding regions = 83 Number of orfs with sites within 600 bp upstream = 103 Fraction of orfs with sites within 600 bp upstream = 0.0165435 Motif number 4 CTGACAGCTAGGGCAAACCTCGGTAAGCAA 3 107 0 GGGCAAACCT 0.880472 -96 CTAGATACATGGGCAAACCCTGACAGCTAG 3 126 0 GGGCAAACCC 0.894333 -77 GGAATCGAACGGGAAAAGCTCCTCGGGTTA 3 178 0 GGGAAAAGCT 0.877851 -25 TGGCACAAGAGGGCAAAATTCCCCCGCGTC 8 37 0 GGGCAAAATT 0.893834 -38 TACGGCGATCGGGCAAAATTTTAAAGCTTG 10 95 0 GGGCAAAATT 0.893834 -70 AGATAAAGGCTGGCAAAGCTTGTTTTTATT 10 125 1 TGGCAAAGCT 0.848302 -40 TGGTCACCATGGGAAAAGCCTCCCCTGGAA 14 47 0 GGGAAAAGCC 0.891979 -118 CGGCGGCTGTGGGCAAAGTTTGGCATTGCC 20 98 0 GGGCAAAGTT 0.909865 -203 TTAGTTTCCCGGCCAAAACTTGGCACTAAA 21 51 0 GGCCAAAACT 0.764906 -121 ATCGGTAAAATGGCAAAGTCAGCATTTTCG 25 55 0 TGGCAAAGTC 0.722212 -212 GGAAAAAGTGGGGCAAAACCTTCAATCGGT 27 256 0 GGGCAAAACC 0.95985 -45 GCTCCAGCGGTGGCAAAGCCTAATGATCCT 33 97 1 TGGCAAAGCC 0.865323 -73 TGTTGCCTAGGGCCAAAACCTGCAAACCAA 36 12 1 GGCCAAAACC 0.788957 -117 TCATGGTCAATGGCAAACCTCGACAATTCT 37 237 1 TGGCAAACCT 0.622814 -64 TCAAACAATCTGGCAAAACCATTGAGTTGG 38 42 1 TGGCAAAACC 0.842741 -57 TAGTTGCCCAGGGAAAAATC 40 1 0 GGGAAAAATC 0.735923 -142 GGGATTTAGGGGGCAAAATAAAACTTTTCA 60 53 0 GGGCAAAATA 0.72088 -237 CAATTATTGTTGGCAAAATTCAGTTGATGC 80 13 0 TGGCAAAATT 0.653649 -22 AATCTTCACCGGGAAAAACGGATTTTATTT 84 68 0 GGGAAAAACG 0.703023 -233 AACAATGGCGGGGCAAAATAGAATATGGGT 87 36 0 GGGCAAAATA 0.72088 -33 CCAATAGTAAGGGCAAAACTTTTCTTGCTA 88 22 1 GGGCAAAACT 0.954143 -72 TACCCATTGATGGAAAAGCGATTGAGTCTC 90 47 1 TGGAAAAGCG 0.388837 -99 TCCTTGATGTGGCCAAAATTAGACCACATT 95 57 1 GGCCAAAATT 0.568322 -68 CTCTCGCCTGGGGCAAACCCAGGACTATCT 98 105 1 GGGCAAACCC 0.894333 -196 AGAATTAAACTGGAAAAGCTAACCGTTGAT 107 15 1 TGGAAAAGCT 0.616999 -212 ATTTCAGTAAGGGCAAATCTAAAGTGCAGA 107 92 0 GGGCAAATCT 0.585329 -135 CTCCAGAATAGGGAAAAACCCACAGATCCT 114 66 0 GGGAAAAACC 0.873211 -153 GGTTAGGGAAGGCAAAAGCCACCACCAATA 116 32 1 GGCAAAAGCC 0.563554 -126 AGAAAAATGGGGAAAAATTAGTGGGATTC 122 10 1 GGGAAAAATT 0.708066 -27 CAGGGCAAAGTGAGGAAAAATG 124 185 0 GGGCAAAGTG 0.799464 -12 GAGTGACATTGGGCAAAATCCTATCACTCC 127 67 1 GGGCAAAATC 0.906311 -156 ATAAAAAGCAGGGAAAAGCTTTTGGCAATC 132 135 1 GGGAAAAGCT 0.877851 -62 CCTTGGCAAAGGCCAAAATTACCTAATCCC 135 35 0 GGCCAAAATT 0.568322 -73 CACCATTGCAGGGAAAAATAAGGTTTCAGC 139 142 0 GGGAAAAATA 0.426613 -125 AGTTGGAAATGGCAAAATGCTTGAATGAT 139 248 0 TGGCAAAATG 0.427046 -19 TCAACCATGGGGGCAAAGCAACAAGCCCTC 140 24 0 GGGCAAAGCA 0.884429 -277 TGGGACAGAGGGGAAAAGCTCTCCTCCGGT 140 247 0 GGGAAAAGCT 0.877851 -54 AATTCCAGTCTGGCAAAGCAAAATGAAATC 142 174 0 TGGCAAAGCA 0.631732 -48 ********** Masking position 5 Map Score: 31.4684 Number of sites scoring better than the average of aligned sites = 2118 Number in coding regions = 1877 Number in noncoding regions = 241 Number of orfs with sites within 600 bp upstream = 251 Fraction of orfs with sites within 600 bp upstream = 0.0403148 Motif number 5 AGGGCGATGGAAAAAGGGTTTGAAAA 3 4 1 GCGATGGAAG 0.556076 -199 AGCCCATCCTCCCTGGGGTAGGATAACCTAACA 4 50 1 CCCTGGGGAA 0.889424 -63 TCTATCGCCCCCCATGGCAATTAGCTGGGTATG 13 204 0 CCCATGGCAA 0.900295 -97 TCCCCTGTGGCCCTTGGCAAGTTTTTTGGCAAA 15 31 0 CCCTTGGCAT 0.575023 -49 TTCCCCCCTGGCGATCGGGTCTTTGTG 16 165 0 CCCCTGGCAG 0.851463 -17 AAATTTCCCCCCCTAGGCTAGGGGCCGGGGTTA 18 12 1 CCCTAGGCAG 0.872315 -46 AGGGTATTTAGCCTGGGGCAGTATGGGGCAACT 23 48 1 GCCTGGGGAA 0.867118 -64 AGCCAGAGTACCCTAGGGGAGAGCGAGTAAATT 25 106 0 CCCTAGGGAG 0.92185 -161 ATTTTGCTGTCCGTTGGCGATCGCCAGCACCGA 27 228 1 CCGTTGGCAG 0.896056 -73 CCCCTAGCCCCCCTTGGAAAGGAGGGAACTGCC 31 33 0 CCCTTGGAAA 0.832227 -60 TAGAATGTATCCCAAGGGCAATGCTAGTTGGAC 33 53 1 CCCAAGGGAG 0.870726 -117 CAGGTTTTGGCCCTAGGCAACAA 36 1 0 CCCTAGGCAA 0.899033 -128 CAGGTAGAGGGCGTTGGCAAGGGTACTTTGCAC 39 45 0 GCGTTGGCAG 0.873506 -150 GATTTTTCCCTGGGCAACTATGCGGTCATC 40 8 1 CCCTGGGCAA 0.93489 -135 TCCGAAAATGCCGTGGGACAAAACCAGGTTAGC 47 78 1 CCGTGGGAAA 0.50941 -107 GCGAGAGTTACCCTTGGCCACCAAACCTTGGCT 59 26 0 CCCTTGGCAA 0.940523 -275 TTGCTTCTAGGCCTTGGATAGCGAGAGTTACCC 59 46 0 GCCTTGGAAG 0.904911 -255 TTTTCAGGAGCCTAGGGGATGGTTGGTAACTG 60 268 0 GCCTAGGGAG 0.905386 -22 GGGAGGCACAGCCTAGGGGATAATGGGAAAGTT 62 36 0 GCCTAGGGAA 0.801846 -54 TAACATCCGCGCCAGGGAGATTACTCTGGCAAA 66 170 1 GCCAGGGAAA 0.676007 -131 AAGGGCGATTGCCATGGAAACGGAAAAGAGCGA 67 77 1 GCCATGGAAG 0.844573 -89 TCCTCTTTCTCCCTAGGCCAATGGGGTCATCAA 71 80 0 CCCTAGGCAG 0.954658 -32 AAACAACGCCGCGATGGCTAGAGATTCGCCGCG 72 76 1 GCGATGGCAG 0.799726 -137 GCGATGGGAAAAAATAAGCGGGC 73 1 1 GCGATGGGAA 0.486112 -114 CTTCCAACCAGCCTTGGCCATGAAGGTTAACTT 77 199 0 GCCTTGGCAA 0.927686 -102 GGCAATAAACGCCAGGGGGAAGACTGAGCAGGG 85 90 0 GCCAGGGGAA 0.788407 -51 CATTGCGCCCCCCAGGGACAACGG 89 2 0 CCCAGGGAAG 0.858801 -76 TTTCCCTGGGTAATGGAAAGGGTAGG 89 62 0 CCCTGGGTAG 0.599806 -16 AACTTGAATTCCCATGGACATTGGCTCCGTGAG 92 153 1 CCCATGGAAG 0.870102 -148 CCTGGGTTTGCCCCAGGCGAGAGGAGATTAGTT 98 95 0 CCCCAGGCAG 0.763469 -206 TTTCAAATTTGCCTAGGCAAGGAGAATTGGGGT 100 64 0 GCCTAGGCAA 0.878385 -96 CTATTGGCCAGCCTTGGCAATCAAAAATCCGGT 112 48 1 GCCTTGGCAA 0.927686 -191 CAGTCTACCGCCCAAGGAGAAGGCCCCATCTCC 118 60 0 CCCAAGGAAG 0.790431 -77 TCGGTGTTAGCCCTGGGCCACTGTCCCCATCCC 124 96 0 CCCTGGGCAG 0.971204 -101 TAGACACCAGGCCATGGGGACAGTCCCGTCCGC 126 127 1 GCCATGGGAG 0.906576 -102 CTGACCTTGAGCCAGGGCGATCGCCGGAGAGAG 131 149 0 GCCAGGGCAG 0.940223 -152 CTGATTTTCCGCCTTGGCAAAGGCCAAAATTAC 135 43 0 GCCTTGGCAG 0.968079 -65 CGGTTCACCGCCGTTGGGGAATGGAGGCGTCAA 140 218 0 CCGTTGGGAG 0.828451 -83 ******** * * Masking position 10 Map Score: 40.3328 Number of sites scoring better than the average of aligned sites = 2652 Number in coding regions = 2385 Number in noncoding regions = 267 Number of orfs with sites within 600 bp upstream = 279 Fraction of orfs with sites within 600 bp upstream = 0.0448121 Motif number 6 CCTGGGCCGACCAAAGGTTGATCACCGGGGAAATGGGCCT 2 31 0 CCAGGAGGGG 0.980697 -97 CTTTGGTCGGCCCAGGGTTCGTCAATGGTGTTAGGATCTG 2 55 1 CCCGGGGGTG 0.902386 -73 GGGAAAAGCTCCTCGGGTTAGAATCTGGGGAGATTGATGG 3 158 0 CCTGGGGGGG 0.956855 -45 TCTATCGCCCCCCATGGCAATTAGCTGGGTATGGTAATGG 13 197 0 CCCGGTGGGT 0.64439 -104 AAATTTCCCCCCCTAGGCTAGGGGCCGGGGTTAGTCCGTC 18 12 1 CCCGGGGGGG 0.991569 -46 ATTTTAGCTTCCCATGGCTAGCCAATGGCGATCGTAAAGA 25 172 1 CCCGGGGGCG 0.908921 -95 TAGAAATTTCTCAATCAGGAAAAAGTGGGGCAAAACCTTC 27 263 0 TCACAAGGGG 0.592502 -38 GATAGACTCTCCTTCGAGAAAATGGGGTGAAAAACAGCT 29 10 1 TCCCGAGGTG 0.492394 -272 TTCCCTCCTTTCCAAGGGGGGCTAGGGGGGATTAAGCAGC 31 38 1 TCCGGGGGGG 0.988647 -55 TCACCCACTTTCCAGGGATTGGTGGAGGGGGAACACCGCG 37 127 1 TCCGGGGGGG 0.988599 -174 GAAACTGAATCCTGAGGTGGGCTTACGGGGTGAAGGGAAG 37 271 0 CCTGGGGGGG 0.972612 -30 CTAAATTTGGTCAGAGGTCAGGCTAGGGGGGGCGAGACAA 48 33 1 TCAGGGGGGG 0.98699 -65 GTCCTGGGGGTCAACGGGTAGGGGTTGGGAATTATGGGTC 53 56 1 TCAGGGGGGA 0.845189 -218 AACGCCTCCGGTCAATTGCTGGGGTTGCTGTTGC 56 5 1 CCTGGAGGGG 0.938794 -247 ATTTAACGGATCAACCGGTTTTTTTGGGGGTTATTCAAGT 64 80 0 TCACGTGGGG 0.839742 -32 CCTAGCATCTTCATTGGGGCTATTTTGGGGATTGG 69 44 1 TCAGGTGGGG 0.934907 -25 TCAATGGTGATCATTGGTTAACCTATGGGGCTCAATAAAA 77 20 0 TCAGGAGGGG 0.970843 -281 GCGATATGGCTCAGCGAAATGCCCACGGGGACCAGGGGAG 79 81 0 TCAGAGGGGG 0.900797 -168 TAAACTTGAATCAGCCAAATAAAACAGGGGATCA 83 71 1 TCACAAGGGG 0.592499 -24 TTTCCCTGGGTAATGGAAAGGGTAGGCTTAGAT 89 55 0 CCCGGTGGGT 0.64442 -23 AATTCATATCCCCGCCGCAAGCGAACGGGGCATTACGGAA 92 25 1 CCCCGGGGGG 0.979755 -276 CTCATTAAGGACATAGGGACAAACGTGGGGAAACAAATGC 97 83 1 ACAGGAGGGG 0.71582 -218 TCAAAGATAGTCCTGGGTTTGCCCCAGGCGAGAGGAGATT 98 99 0 TCCGGGGGCG 0.867255 -202 CGAAACAAAATCCCAGTTAGAGCAATGGGGCATTTGGCAA 98 244 1 TCCGTAGGGG 0.665759 -57 ATTTGTAATTTCTCTCGGCTGTGAACGGGATGGTTAAGCT 99 118 0 TCTCGGGGGA 0.379263 -83 GTCTAAAGGCCCACTCGTTAGGACACGGTGTAAAAAAAAT 104 209 1 CCACGGGGTG 0.745888 -92 GAATCTAGTCTCTCTGAGGTGTGCCTGGGGATTCGCCCTC 108 44 0 TCTGAGGGGG 0.71955 -182 AATAAACATATCAGGCAAGTTGAGATGGGGCATAGAGATT 116 58 1 TCACATGGGG 0.385445 -100 AAGGAAAATTCCATTCTTCAGGAGATGGGGCCTTCTCCTT 118 40 1 CCACTGGGGG 0.687423 -97 CTCCCATTGGATAACTGCAGGGGGCCGAACTGT 126 206 0 CCAGGAGGGG 0.980694 -23 TTAGTTACTTCCAATGGTGGATACAGGGGGAGCAAAGGTG 131 198 0 CCAGGAGGGG 0.980699 -103 CCACAATCAGCCCGTGGAAAGAGGATGGGTTTAGTTACTT 131 228 0 CCCGGGGGGT 0.905414 -73 TTTTTATCCATCAATGGTGAACCAATGGGATTCGCAAATA 132 102 0 TCAGGAGGGA 0.705555 -95 CAAGAAATTCCCAATGGTAAAATCATGGGGGTATAGATAT 139 43 0 CCAGGAGGGG 0.980693 -224 *** ** * **** Masking position 17 Map Score: 41.1148 Number of sites scoring better than the average of aligned sites = 1400 Number in coding regions = 1262 Number in noncoding regions = 138 Number of orfs with sites within 600 bp upstream = 143 Fraction of orfs with sites within 600 bp upstream = 0.0229682 Motif number 7 CATCAGCCCATCCTCCCTGGGGTAGGATAA 4 46 1 TCCTCCCTGG 0.967269 -67 GGGGATATAGTCCGCCCCTGTGCCAAGTTC 13 156 1 TCCGCCCCTG 0.943183 -145 CATGGGAAAAGCCTCCCCTGGAAGCTTATA 14 40 0 GCCTCCCCTG 0.94141 -125 CTAATCTTAGTCCTCCCCTGTGGCCCTTGG 15 47 0 TCCTCCCCTG 0.941192 -33 TTCCCCCCTGGCGATCGGGTC 16 171 0 TCCCCCCTGG 0.931504 -11 ACAGTAAAGTGCCGCCCTTGAGCTTAGCTT 27 46 1 GCCGCCCTTG 0.961925 -255 ATCCCCCCTAGCCCCCCTTGGAAAGGAGGG 31 40 0 GCCCCCCTTG 0.918093 -53 AGCCTGTTGGGGCTCCCTTGGCGTTAGATG 55 189 1 GGCTCCCTTG 0.855846 -33 TGTTTGAAAAGCCCCCCTGGCTCCCCAAGT 60 118 0 GCCCCCCTGG 0.931755 -172 CCTAGGCTGTGCCTCCCCGGAATTGTGGGG 62 52 1 GCCTCCCCGG 0.951389 -38 TATGTTCCTCCGTGGTATTCACTAA 63 6 1 TCCTCCGTGG 0.877256 -68 ATATGGGTAGTCCGCCGTTGCGTTTCAGTC 87 14 0 TCCGCCGTTG 0.858878 -55 GCCAAGCCCTTCCTCCTTGGTTACTGCCAG 99 90 1 TCCTCCTTGG 0.879396 -111 ACCGACCCATTGCTCCCTTGCCCT 116 5 0 TGCTCCCTTG 0.855358 -153 ATGACTTTGATGCTCCTTTGGAAGAAATGC 117 253 1 TGCTCCTTTG 0.593353 -34 GACAGTCCCGTCCGCCCCGGTTACTTTTCT 126 145 1 TCCGCCCCGG 0.952875 -84 CCCTTGACGTTCCGCCGCTGCTCCATGTTA 131 89 1 TCCGCCGCTG 0.800589 -212 ATCCTGATTTTCCGCCTTGGCAAAGGCCAA 135 49 0 TCCGCCTTGG 0.883219 -59 GCCATGGAAAGCCTCCCTGGCAGAAGTTTT 139 193 0 GCCTCCCTGG 0.967393 -74 CCTCCATAATGCCGCCTTTGTGTTGGGAAC 140 134 1 GCCGCCTTTG 0.861758 -167 TTCTGATTTTTGCTCCTTTGTAAATTGTCG 143 74 0 TGCTCCTTTG 0.593353 -107 ********** Masking position 5 Map Score: 25.179 Number of sites scoring better than the average of aligned sites = 591 Number in coding regions = 514 Number in noncoding regions = 77 Number of orfs with sites within 600 bp upstream = 81 Fraction of orfs with sites within 600 bp upstream = 0.01301 Motif number 8 GGCGATCGCCGTCTTGGCTATGGCAGACATCAG 13 19 1 GCGGCTATGG 0.844854 -282 ATAGTTCACTGCCAAGCCAATGGTCACCATGGG 14 64 0 GCGCCAATGG 0.861816 -101 TTGCCCACAGCCGCCGACACTGGGCGGTTTTTC 20 112 1 CGGACACTGG 0.707957 -189 AGTGATCGCTCGGTGCGCCATGGTTGGGATTAG 20 158 0 CGCGCCATGG 0.778635 -143 AGCTTCCCATGGCTAGCCAATGGCGATCGTAAA 25 177 1 GCGCCAATGG 0.861816 -90 TTTTCGTTCCCCGTTGACAATGGCGGTTTTACT 27 75 1 CGGACAATGG 0.937921 -226 AATGTCAATGCACCCGGCCATGGTTTGTTTGCG 35 46 0 CCGGCCATGG 0.982007 -163 AACTTTTGACCAGGCGACAATGGCCTTTACCTT 36 50 0 CGGACAATGG 0.938026 -79 AGTTTATTTGCCCTCTGCCATGGCTCACCCACT 37 103 1 CCTGCCATGG 0.865612 -198 GGCTAGGGGGGGCGAGACAATGGGGCAAAGAAA 48 53 1 GCGACAATGG 0.955529 -45 CTTCCCGGAGGCAATGGCAATTTTTCT 48 81 0 CGGGCAATGG 0.953326 -17 TTTATGCCTAGGGCCAGCAATGGTTATGTTAGT 49 37 0 GGAGCAATGG 0.547321 -79 TCCGATTGCTGCCATGACAATGGCCGTGGATAA 49 72 1 GCGACAATGG 0.955529 -44 CCCGTTGACCCCCAGGACAATGGCTTTCCCCCT 53 41 0 CCGACAATGG 0.967657 -233 ACACCGGACCATGGGATAGAAGAT 65 92 0 CCGACCATGG 0.975852 -14 AATGGTCATTCCCCAGACCCTGGCGTCTTTGCC 66 197 0 CCGACCCTGG 0.866169 -104 TCAACGAAGGGCGATTGCCATGGAAACGGAAAA 67 71 1 GGTGCCATGG 0.700588 -95 CATCAAACCCCACATCACCATGGTAATCTTTCC 71 53 0 CCCACCATGG 0.837353 -59 CTAATAATCTCGCAACAATGGCGGGGCAAAA 87 48 0 CCAACAATGG 0.711344 -21 TTTTGGCGGCGGCACTACCATGGTTTTGGTGTG 94 50 0 GCTACCATGG 0.774 -86 GAAAATCATCGTCGGGACTATGGCCGCAACGAA 94 99 0 GCGACTATGG 0.801271 -37 GCCATGCCACCGGCCGGCAATGGATAGTCCACG 101 39 1 CGGGCAATGG 0.953364 -165 TCTAACTGACGGCAAGGCCATGGTCGTCAACAA 108 101 1 GCGGCCATGG 0.97512 -125 CGATAATAGACACCAGGCCATGGGGACAGTCCC 126 121 1 CCGGCCATGG 0.982007 -108 * * ******** Masking position 11 Map Score: 23.0633 Number of sites scoring better than the average of aligned sites = 741 Number in coding regions = 667 Number in noncoding regions = 74 Number of orfs with sites within 600 bp upstream = 79 Fraction of orfs with sites within 600 bp upstream = 0.0126887 Motif number 9 TAAGTTGGGGGTGAAAGAGGGGCAA 5 84 0 ATTGGGGGAA 0.860899 -15 GGGCGTTTTGTCCCTGAGGCAAGCTTTAAAATT 10 76 1 TCCTGAGGAG 0.439751 -89 ACCTGCAACAACCCAGGGGCCAA 12 1 0 ACCAGGGGAA 0.724627 -125 GTTCCACAGCTTTTTGGGGACAGCAGGCTGCTG 12 40 0 TTTTGGGGAG 0.733923 -86 GAAAAAGCTAAACTGGAGGGCAATTTGATCATC 13 255 1 ACTGGAGGAA 0.704628 -46 TAGTGAAAATAGTTGGGGGACAAAGGCTTTAGT 20 188 0 ATTGGGGGAA 0.860899 -113 TTCCCCCTAAATTTGGGGGTCAGGGGGGCTTTT 26 135 0 ATTGGGGGAG 0.928783 -166 TAGTGAGGAGATTTAGGGGGCAGAATAAAACTT 26 202 1 ATTAGGGGAG 0.757005 -99 GTATTGGGGAATTTAGGGGATAAATCCAGACTT 29 249 1 ATTAGGGGAA 0.596516 -33 AGGTTATCGGAGGGAAGTTTGGAACGC 33 5 1 TTCGGAGGAG 0.508574 -165 GGTTAGGAAACTGGGGGATAGAACCCGAAAT 33 149 0 ACTGGGGGAG 0.969176 -21 TAATAAACCTTGAGGTTAAAAATTATTAA 44 7 1 ACTTGAGGAA 0.428726 -40 CTGGCCAGTTAGTCTGGGGTAAGGCGATCGCCT 45 162 1 ATCTGGGGAG 0.751794 -37 TTTGGAAATGTACAGGGGGAAAGCCATTGTCCT 53 28 1 TCAGGGGGAG 0.576891 -246 AAAGCCATTGTCCTGGGGGTCAACGGGTAGGGG 53 47 1 TCTGGGGGAA 0.909352 -227 ATGGACGTAGAGTTAGGGGGGAAATTTCCGGAT 56 141 1 ATTAGGGGAA 0.596516 -111 TTATTGGGGGATTTAGGGGGCAAAATAAAACTT 60 57 0 ATTAGGGGAA 0.596516 -233 TGGCTCCCCAAGTTTGGGGGAAGTTAAGTAAAA 60 98 0 ATTTGGGGAG 0.804027 -192 GACCCTGGGGGGAGTAGGAGTAAG 68 2 1 ACCTGGGGAG 0.879554 -75 AAACAAGATAAACTGGGGCTGAGTCCGCCCAAA 70 33 0 ACTGGGGCAG 0.561751 -74 ACTGATTTGGGGGCAAAGGAAACGCCC 78 182 0 ATTGGGGGAA 0.860899 -17 ATCAAAGGTTTACCGGGGGTTAGCTGTGCCACA 97 252 1 TCCGGGGGAG 0.939781 -49 CGTTGGTGATTACTTGGGGCTAGAACGGTCAGA 102 118 0 TCTTGGGGAG 0.869282 -28 CAGGAATTTATACTGGAGGTGAGGGCGAATCCC 108 24 1 TCTGGAGGAG 0.771669 -202 GCGATCACAATTCTAGGGGACAGTTTAAAAACG 110 28 1 TCTAGGGGAG 0.834699 -87 TAGTCTAAGTTGCTGGGGGGGAGG 115 2 0 TCTGGGGGAG 0.95483 -256 TTATAAAGACAACCGGGGGTTAATTTCTTAACC 115 166 1 ACCGGGGGAA 0.916777 -92 TCAAAACTACTTCTGGGGGAGAAGTTATACCTA 121 58 1 TCTGGGGGAA 0.909352 -151 TTGTTTCCTGGGGAGAATTATCTAAAA 121 192 0 TCCTGGGGAA 0.699689 -17 AACGGCGGTGAACCGGAGGAGAGCTTTTCCCCT 140 236 1 ACCGGAGGAG 0.787738 -65 * ******* ** Masking position 12 Map Score: 27.4011 Number of sites scoring better than the average of aligned sites = 1149 Number in coding regions = 968 Number in noncoding regions = 181 Number of orfs with sites within 600 bp upstream = 190 Fraction of orfs with sites within 600 bp upstream = 0.0305172 Motif number 10 ACCTTTGGTCGGCCCAGGGTTCGTCAATGG 2 53 1 GGCCCAGGGT 0.944454 -75 CCAAAAAACTTGCCAAGGGCCACAGGGGAG 15 35 1 TGCCAAGGGC 0.916457 -45 AGCGTTTGGAGCCCCAGGCC 16 1 0 GCCCCAGGCC 0.791728 -181 GCCCCATACTGCCCCAGGCTAAATACCCTC 23 47 0 GCCCCAGGCT 0.795573 -65 GTAGAATGTATCCCAAGGGCAATGCTAGTT 33 52 1 TCCCAAGGGC 0.805201 -118 TTGTTGCCTAGGGCCAAAACCTGC 36 5 1 TGCCTAGGGC 0.595473 -124 GGCCGGAAACTGCCCAGGGACTAATGCAGG 39 74 0 TGCCCAGGGA 0.92653 -121 GGCAGTTTCCGGCCAATGGCGATCGCCAAG 39 90 1 GGCCAATGGC 0.685897 -105 ACCGCATAGTTGCCCAGGGAAAAATC 40 7 0 TGCCCAGGGA 0.92653 -136 CGGATCTTTATGCCTAGGGCCAGCAATGGT 49 46 0 TGCCTAGGGC 0.595473 -70 AAGGTTTGGTGGCCAAGGGTAACTCTCGCT 59 30 1 GGCCAAGGGT 0.866954 -271 TGACCCCATTGGCCTAGGGAGAAAGAGGAG 71 84 1 GGCCTAGGGA 0.523505 -28 TAACCTTCATGGCCAAGGCTGGTTGGAAGT 77 203 1 GGCCAAGGCT 0.812925 -98 CAATTCTCCTTGCCTAGGCAAATTTGAAAA 100 68 1 TGCCTAGGCA 0.463456 -92 TGAGGGCGAATCCCCAGGCACACCTCAGAG 108 43 1 TCCCCAGGCA 0.738579 -183 GATTTTTGATTGCCAAGGCTGGCCAATAGA 112 47 0 TGCCAAGGCT 0.767928 -192 TTTGAAGCAGTGCCCAGGCAGATTTTGCCT 112 101 1 TGCCCAGGCA 0.877769 -138 TTAGGAAGCTGGCCCATGCCAACGGGAAGT 114 101 1 GGCCCATGCC 0.793725 -118 TGGGGACAGTGGCCCAGGGCTAACACCGAT 124 100 1 GGCCCAGGGC 0.940048 -97 GACGGGACTGTCCCCATGGCCTGGTGTCTA 126 127 0 TCCCCATGGC 0.597395 -102 ********** Masking position 6 Map Score: 20.1692 Number of sites scoring better than the average of aligned sites = 1191 Number in coding regions = 1113 Number in noncoding regions = 78 Number of orfs with sites within 600 bp upstream = 87 Fraction of orfs with sites within 600 bp upstream = 0.0139737 Motif number 11 CTTGTCCACCGGGTGTCGGGTA 2 3 0 GGGTGTCGGG 0.552848 -125 GTTATCACAGGGGTGGTGGCACAAGAGGGC 8 53 0 GGGTGGTGGC 0.961235 -22 TTACAGTTGGGTGGAGGGTAAGAATCTG 20 9 1 GGGTGGAGGG 0.886524 -292 AACCGCCCAGTGTCGGCGGCTGTGGGCAAA 20 111 0 TGTCGGCGGC 0.631528 -190 TTAACGAAGATGGCGGTGGGTTTCT 22 29 1 TGGCGGTGGG 0.95053 -15 GGGTCAATGTTGCCGGAGGGCCGCACAAGT 26 53 0 TGCCGGAGGG 0.722829 -248 GCTTGCCAATGGGCGGTGGCTAAAATTGAA 28 131 1 GGGCGGTGGC 0.980718 -58 TTCCAGGGATTGGTGGAGGGGGAACACCGC 37 136 1 TGGTGGAGGG 0.829305 -165 TGCAGGTAGAGGGCGTTGGCAAGGGTACTT 39 50 0 GGGCGTTGGC 0.835386 -145 TTAGTCTTTTTGGCGGCGGCACTACCATGG 94 60 0 TGGCGGCGGC 0.962992 -76 TGGCGGTGGGAGTCCTCAGT 96 1 1 TGGCGGTGGG 0.95053 -99 ATCCATTGCCGGCCGGTGGCATGGCCTAAG 101 34 0 GGCCGGTGGC 0.93012 -170 AGAATGCTGAGGGTGGCGGCTCCGAGCAAT 102 91 0 GGGTGGCGGC 0.953269 -55 ATATGTTTATTGGTGGTGGCTTTTGCCTTC 116 39 0 TGGTGGTGGC 0.939101 -119 TTTTCTAGTAGGGCGGTGTCTGTCATGGGA 117 71 0 GGGCGGTGTC 0.728884 -216 AAAATGCCGGTGCTGGAGGCCGTTTACACA 124 161 0 TGCTGGAGGC 0.676687 -36 ********** Masking position 5 Map Score: 15.4192 Number of sites scoring better than the average of aligned sites = 1211 Number in coding regions = 1178 Number in noncoding regions = 33 Number of orfs with sites within 600 bp upstream = 44 Fraction of orfs with sites within 600 bp upstream = 0.00706714 Motif number 12 GTTGATCACCGGGGAAATGGGCCTTGTCCACCGGG 2 20 0 GGATGGGCTT 0.819345 -108 GAGGTAAGGCGGTCAAGCGGGGGTTAAAACCCTGT 4 80 0 GGACGGGGTT 0.97375 -33 GAAGTTTGTAGGTAATGTTGGGTTTACAAGCGAAA 25 25 1 GGATTGGGTT 0.933358 -242 CTCTCCCCTAGGGTACTCTGGCTTTGGGAAAGGGT 25 116 1 GGACTGGCTT 0.845225 -151 CTTTGGGAAAGGGTAAATGGGGTTATCCGGCCTGT 25 137 1 GGATGGGGTA 0.877428 -130 CCAGTATTGGGGAATTTAGGGGATAAATCCAGACT 29 246 1 GGTAGGGGTA 0.350687 -36 TTTCCAAGGGGGGCTAGGGGGGATTAAGCAGCCAA 31 46 1 GGTGGGGGTT 0.628501 -47 GGTTAGGAAACTGGGGGATAGAACCCGAAA 33 150 0 GGAGGGGGTA 0.733148 -20 CTTTTGACCAGGCGACAATGGCCTTTACCTTAGTC 36 46 0 GGAATGGCTT 0.520893 -83 ACACCTGGCCAGTTAGTCTGGGGTAAGGCGATCGC 45 158 1 AGACTGGGTA 0.354815 -41 TAACTATAAAGGCTAACCTGGTTTTGTCCCACGGC 47 87 0 GGACTGGTTT 0.511349 -98 CCCATTACTAGGACAAACGGGGGTTTTTCTCCTAA 52 20 0 GGACGGGGTT 0.97375 -28 TCTAATCCTTGGCAAGGTTGGGATTTGAGCCAATG 59 140 1 GGATTGGGTT 0.933358 -161 GTGCCTCCCCGGAATTGTGGGGTTTTCTTTAAGCA 62 60 1 GGTTGGGGTT 0.81509 -30 TCTTCATTGGGGCTATTTTGGGGATTGG 69 51 1 GGATTGGGAT 0.440433 -18 GCTGGATGGTGGGTAAAATGGGCTTGGGTTGATTT 70 80 1 GGAATGGGTT 0.832759 -27 AGATTACCATGGTGATGTGGGGTTTGATGACCCCA 71 57 1 GGATGGGGTT 0.954069 -55 GGTATTTCGCGGGTAGCCAGGGATAGATGTCCGAT 77 138 0 GGACAGGGTA 0.478418 -163 CTGCATCAAAGGTTTACCGGGGGTTAGCTGTGCCA 97 248 1 GGTCGGGGTT 0.887284 -53 ATTTGCCGTGGGTTATTCTGGGCTTCAGGTATTGG 108 149 0 GGACTGGGTT 0.961555 -77 TGTATTATAAAGACAACCGGGGGTTAATTTCTTAA 115 162 1 AGACGGGGTT 0.70298 -96 TGTAGTAGTCGGTGATCTTGGGGTTTTGATCCCCT 131 58 1 GGATTGGGTT 0.933358 -243 TGGGGGATTAGGTAATTTTGGCCTTTGCCAAGGCG 135 32 1 GGATTGGCTT 0.753573 -76 GTTTGAGGCCGGGAATTCTGGGTTAGGCTCAGCAA 136 85 1 GGACTGGGTA 0.896042 -49 ** * ***** ** Masking position 10 Map Score: 18.5974 Number of sites scoring better than the average of aligned sites = 506 Number in coding regions = 439 Number in noncoding regions = 67 Number of orfs with sites within 600 bp upstream = 73 Fraction of orfs with sites within 600 bp upstream = 0.011725 Motif number 13 TCCCCTGGAACCATCATTGTCTCTATCCCC 10 37 0 CCATCATTGT 0.539715 -128 ACGGCGATCGCCATCATTAG 13 1 0 CCATCATTAG 0.685657 -300 ATCATCTTCACTATCATTGGGGAATCTCC 13 282 1 CTATCATTGG 0.552966 -19 GCTAATTTCCCCATTCTAGGACAGGGGCCG 26 20 1 CCATTCTAGG 0.388175 -281 ATTGCCACTACCATCATAGGTTACCCAGCC 35 168 0 CCATCATAGG 0.906713 -41 ATCGCCTTCAACCATTGGCGTTTTAGCT 47 167 0 CAACCATTGG 0.459735 -18 ATGCCTAGGGCCAGCAATGGTTATGTTAGT 49 37 0 CCAGCAATGG 0.692968 -79 CAGCACAGTCCCATCCTAGGAAAAATTCCC 59 197 1 CCATCCTAGG 0.843165 -104 TAAAAGTCACCCATTATTGGGGGATTTAGG 60 73 0 CCATTATTGG 0.756049 -217 GTGCCCAAACCCATCCTAGGCAAGCAATTC 66 95 0 CCATCCTAGG 0.843165 -206 AAAACCCAACCCACCATTGGACAGATCCGC 73 92 0 CCACCATTGG 0.950658 -23 TTACTTCCAACCAGCCTTGGCCATGAAGGT 77 205 0 CCAGCCTTGG 0.867614 -96 AATCGCTTTTCCATCAATGGGTAGTTTTAT 90 40 0 CCATCAATGG 0.832244 -106 GCGATCAAGACCACCATTAGGGAGCTTTTG 99 38 0 CCACCATTAG 0.600082 -163 AATTGCTCTGCCACTATAGGCTAGGATCTT 110 69 1 CCACTATAGG 0.44105 -46 AATCTATTGGCCAGCCTTGGCAATCAAAAA 112 45 1 CCAGCCTTGG 0.867614 -194 TTTTTTTTGTCCATCATTGGTTACTGGACT 117 180 0 CCATCATTGG 0.965236 -107 CCCCCTGTATCCACCATTGGAAGTAACTAA 131 208 1 CCACCATTGG 0.950658 -93 TGCTTTTTATCCATCAATGGTGAACCAATG 132 115 0 CCATCAATGG 0.832244 -82 TCTAATTCCCCCATCATTGGGGGTTTGGGG 138 37 1 CCATCATTGG 0.965236 -35 ********** Masking position 3 Map Score: 15.7624 Number of sites scoring better than the average of aligned sites = 550 Number in coding regions = 502 Number in noncoding regions = 48 Number of orfs with sites within 600 bp upstream = 51 Fraction of orfs with sites within 600 bp upstream = 0.00819146 Motif number 14 GCACAAGAGGGCAAAATTCCCCCGCGTCCGT 8 34 0 GCAAATTCCC 0.834776 -41 CAAAAAACTTGCCAAGGGCCACAGGGGAGGA 15 36 1 GCAAGGGCCA 0.623113 -44 ACTGCCCCAGGCTAAATACCCTCTCATCCTG 23 39 0 GCAAATACCC 0.904093 -73 CCAACGGACAGCAAAATTCCCCATCGGTGAA 27 214 0 GCAAATTCCC 0.834776 -87 CTCGTCCAGTGCAAAGTACCCTTGCCAACGC 39 37 1 GCAAGTACCC 0.910922 -158 CAGAATTTAGGCAAAGTGCCCAAACCCATCC 66 109 0 GCAAGTGCCC 0.97266 -192 GGGGGGTATGGAAAAATACCCAAAAACAACG 72 53 1 GAAAATACCC 0.502948 -160 GCGGGCATTAGCAATGGGCCCACTCTTTCTA 73 28 1 GCATGGGCCC 0.727883 -87 CTGGCTACCCGCGAAATACCCTCAACCGGGC 77 153 1 GCAAATACCC 0.904092 -148 ATATGGCTCAGCGAAATGCCCACGGGGACCA 79 87 0 GCAAATGCCC 0.970409 -162 CACTGCTGTTGCCAAATGCCCCATTGCTCTA 98 261 0 GCAAATGCCC 0.97041 -40 ATTTGCGGCGTCTAAAGGCCCACTCGTTAGG 104 200 1 TCAAAGGCCC 0.603815 -101 AATTGCTCGGGCAAAGGGCCCTGTTGGATAT 126 47 1 GCAAGGGCCC 0.966909 -182 TTTAATCGGCGCCAAAGGCCCTAAACCCTAA 140 65 1 GCAAAGGCCC 0.964203 -236 TGGGCTTGATGAAAAGTGCCCTAAGAGCCCA 143 159 1 GAAAGTGCCC 0.792476 -22 ** ******** Masking position 4 Map Score: 14.5307 Number of sites scoring better than the average of aligned sites = 161 Number in coding regions = 139 Number in noncoding regions = 22 Number of orfs with sites within 600 bp upstream = 29 Fraction of orfs with sites within 600 bp upstream = 0.00465789 Motif number 15 TAGACTACCAGGGAGAAGGAAAAACAGTGAAAA 16 71 0 GGGAAGGAAA 0.591901 -111 TTTAGTTTAGGGGTTAAGGGCAACCTCTGGAAA 17 27 1 GGGAAGGGAA 0.973313 -60 TTACAGTTGGGTGGAGGGTAAGAATCTGTAG 20 9 1 GGGGAGGGAA 0.80357 -292 ACTCTGGCTTTGGGAAAGGGTAAATGGGGTTAT 25 130 1 TGGAAGGGAA 0.729058 -137 CCTAAATTTGGGGGTCAGGGGGGCTTTTAAAGC 26 130 0 GGGCAGGGGG 0.603905 -171 AAGCCTAGACGGGAGAAGGGGAACCATAGGATC 29 155 1 GGGAAGGGAA 0.973313 -127 TGGGCTTACGGGGTGAAGGGAAGCGTTAGAATT 37 261 0 GGGAAGGGAG 0.981496 -40 GGGGTCAAGGGGAGTGGTGAGGAT 40 129 0 GGGAAGGGAG 0.981496 -14 GGAAAATGATGGGGACAGAGAAAAC 42 14 1 GGGCAGAGAA 0.775909 -15 CAAGGTTTGGTGGCCAAGGGTAACTCTCGCTAT 59 29 1 TGGAAGGGAA 0.729058 -272 CACAGCCTAGGGGATAATGGGAAAGTTGCCATT 62 30 0 GGGAATGGAA 0.739499 -60 GTTGCAAAATGTGAGAAGAGCAGTCTAATCTGC 65 14 0 GTGAAGAGAG 0.720171 -92 ATTGGCCTAGGGAGAAAGAGGAGCCAATCAG 71 91 1 GGAAAGAGAG 0.399761 -21 ACTGATTTGGGGGCAAAGGAAACGCCCCCATG 78 177 0 GGGAAAGGAA 0.616838 -22 AATGCCCACGGGGACCAGGGGAGTTAAGCGGAA 79 71 0 GGGCAGGGAG 0.940998 -178 TCAAGATTTTGTGTAAAGAGGAGAATTAAAGTG 84 215 0 GTGAAGAGAG 0.720171 -86 AGACTGAGCAGGGGGAAGGGTAGCCAACGGGAA 85 70 0 GGGAAGGGAG 0.981496 -71 GAGTCAAGGTGGGAAAATAGAAGGGAT 128 5 0 GGGAATAGAG 0.565883 -51 CAAAACTCCTGGGCCAAGAGAATTAGAAT 129 7 0 GGGAAGAGAT 0.720679 -29 CAATCAGCCCGTGGAAAGAGGATGGGTTTAGTT 131 232 0 GTGAAGAGAT 0.283918 -69 CATAAGCCAAGTGGCAAGGGAAATGGGCTTGAT 143 136 1 GTGAAGGGAA 0.848592 -45 *** ***** ** Masking position 7 Map Score: 13.4235 Number of sites scoring better than the average of aligned sites = 719 Number in coding regions = 613 Number in noncoding regions = 106 Number of orfs with sites within 600 bp upstream = 121 Fraction of orfs with sites within 600 bp upstream = 0.0194346