AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00770_hpyl_reg_300.orf -o00770_hpyl_300.ace -a/home/amcguire/genomes/ORF_hpyl.txt -z/home/amcguire/genomes/hpyl.fna -0.39 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 HP0005 121 orotidine 5'-phosphate decarboxylase (pyrF) #2 HP0330 248 ketol-acid reductoisomerase (ilvC) #3 HP0866 40 transcription elongation factor GreA (greA) #4 HP0869 58 hydrogenase expression/formation protein (hypA) #5 HP0870 207 flagellar hook (flgE) #6 HP0871 300 CDP-diglyceride hydrolase (cdh) #7 HP1054 63 H. pylori predicted coding region HP1054 #8 HP1057_HP1058 148 HP1057: H. pylori predicted coding region HP1057, HP1058: 3-methyl-2-oxobutanoate hydroxymethyltransferase (panB) #9 HP1468 51 branched-chain-amino-acid aminotransferase (ilvE) #10 HP1469 114 H. pylori predicted coding region HP1469 #11 HP1470 67 DNA polymerase I (polA) #12 HP1471 65 type IIS restriction enzyme R protein (BCGIB) #13 HP1472 30 type IIS restriction enzyme M protein (mod) #14 HP1483 26 gerC2 protein (gerC2) #15 HP1490 103 hemolysin #16 HP1491 138 phosphate permease Motif number 1 TCTTTAACCCTTAAATCTCATTTTG 1 3 1 TTTAATTAAA 0.493274 -119 GAAAGCCCTTTAAAGTGTAAAATAACGCCATT 1 100 0 TTAAATAAAA 0.801127 -22 TAATGGGAGCGATAATGTTTAAAAACATGCAGA 2 183 0 GATAATTAAA 0.938834 -66 TTATCGCTCCCATTATGGTAAAATAAATACTTG 2 201 1 CATTATAAAA 0.846428 -48 ATTCAGTAGAGATTATAGTAAAAA 3 2 0 GATTATAAAA 0.846428 -39 ACTAAACCTTAATCTTTAAATTAGCCCCTA 4 39 0 CTTAATTAAA 0.844683 -20 AAGCTTGAGCGATAACCTTTAAAAAGCGTTATG 5 27 1 GATAATTAAA 0.938834 -181 TTTTGATTAACAAAACTTTAAAATCCGCAACCA 5 107 1 CAAAATAAAA 0.906127 -101 AAAGAATTTTTTAAAAAATTAAATAGCTTGCAC 6 81 0 TTAAATTAAA 0.750284 -220 AAATTAAATTGATAACATTAAAAAAGCTAAAAG 6 110 0 GATAATAAAA 0.943816 -191 ATACTAACTAGAAAAAAATTAAATTGATAACAT 6 125 0 GAAAATTAAA 0.899261 -176 TAAAAGTTACTAATAAGTTAAAATTCATTAAAA 6 187 1 TAATATAAAA 0.687001 -114 TTAAAATAATCATAATGATTAAAGATTTTAACC 6 214 1 CATAATTAAA 0.938834 -87 TGATCTTGGAGTTAAGGTTTAAAATTTTAGCGT 7 15 1 GTTAATTAAA 0.844683 -49 ATAACCCCCTAAAATTAAAACGACTAACGC 7 44 0 CCTAATAAAA 0.86832 -20 TAAAAATCCTAAGTGTTAAATATAGTGGCA 8 8 1 CCTAATTAAA 0.858493 -141 TCAATTATACTAAAATAATTAAAATGACCGGTT 8 87 0 TAAAATTAAA 0.860518 -62 CTCTATATTATATTAGCTTAAAATGGCTAAGTA 10 61 0 TATTATAAAA 0.769453 -54 GCTTGTGTTACAATAAACTTAAAATTCGCTTGA 11 31 1 CAATATTAAA 0.744718 -37 GGGTATCCTTTTAAAAAATAAAATTATAAC 13 8 0 TTAAATAAAA 0.801127 -23 AAAGATTAAGCCTAACTTTAAAAATCAAGCCTT 15 19 0 CCTAATAAAA 0.86832 -85 AGGCTTAATCTTTTATGTTAAAATTCTGAGATT 15 39 1 TTTTATAAAA 0.46334 -65 AAAACCTAACGATAAATATAAAATATATAAAAT 15 69 0 GATAATAAAA 0.943816 -35 AACTTTAAACCTAAAACCTAACGATA 15 88 0 TTTAATAAAA 0.538302 -16 GTATCTTAAAGTAAAATTTTAAAGAGAGTTTTA 16 15 0 GTAAATTAAA 0.860987 -124 ***** ***** Masking position 9 Map Score: 34.1897 Number of sites scoring better than the average of aligned sites = 961 Number in coding regions = 722 Number in noncoding regions = 239 Number of orfs with sites within 600 bp upstream = 181 Fraction of orfs with sites within 600 bp upstream = 0.0290716 Motif number 2 AATTTTAGCTATGATAAGCGTTTTAAAAACAAA 1 47 0 AATAAGCGTT 0.833413 -75 TTATTTTACACTTTAAAGGGCTTTC 1 107 1 CTAAAGGGTT 0.794178 -15 GCGGTCCTGTAGGTCGGGGGTTTGAATCCCTCC 2 129 1 ATCGGGGGTT 0.973321 -120 CTACTGAATAAGCTTAGGAGATTAA 3 26 1 ATTAGGAGTT 0.822039 -15 CTAATACAATATAATAGGGGCTAATTTAAAGAT 4 25 1 AATAGGGGTA 0.711591 -34 TAGATTCTTAAGCTTGAGCGATAACCTTTAAAA 5 18 1 ATTGAGCGTA 0.820095 -190 ATTCATAAGAAAATAGGGGGTTTTGCAACACCA 5 63 0 ATAGGGGGTT 0.984716 -145 ATACTTGTCAAAATAAAGCGTTTTATAA 6 6 0 ATAAAGCGTT 0.941386 -295 TCACCATGCGATCTTAGGGGGTTGATACTTGTC 6 30 0 ATTAGGGGTT 0.981437 -271 GTAGAAAAATAACAAGAGGGTTTGCAAAAACTC 6 253 1 AAAGAGGGTT 0.915217 -48 AGTCGTTTTAATTTTAGGGGGTTAT 7 49 1 ATTAGGGGTT 0.981437 -15 TTTAACAAACAATTCAAGGGATTTGGCGATT 8 128 1 ATCAAGGGTT 0.941534 -21 AGCTAATATAATATAGAGCGATTATCAAAAAAT 10 76 1 ATAGAGCGTT 0.957757 -39 TTGTAACACAAGCTAGCGCGCTTAAAACCCCTT 11 11 0 ATAGCGCGTT 0.857589 -57 GGGCGAGTTCAGATTGGGGGATTTGTTTGAA 12 45 1 ATTGGGGGTT 0.986779 -21 * ******* ** Masking position 12 Map Score: 17.117 Number of sites scoring better than the average of aligned sites = 598 Number in coding regions = 515 Number in noncoding regions = 83 Number of orfs with sites within 600 bp upstream = 76 Fraction of orfs with sites within 600 bp upstream = 0.0122069 Motif number 3 TTAACCCTTAAATCTCATTTTGATTAAAATT 1 14 1 AACTCATTTT 0.894918 -108 TTTTAAAAACAAACGAATTTTAATCAAAATG 1 29 0 AACGAATTTT 0.966608 -93 ATAGCAAGAAAAGCTAATTTTTCACTTAAAC 2 40 0 AACTAATTTT 0.893135 -209 CACCACCCCATAACGCTTTTTAAAGGTTATC 5 37 0 TACGCTTTTT 0.825396 -171 GTTGTTCCTAAATAGCTTTTTAGAATGATTG 5 138 0 AAAGCTTTTT 0.941911 -70 TTATAAAACGCTTTATTTTGACAAGT 6 6 1 AACGCTTTAT 0.812847 -295 TAAAAAAGCTAAAAGAATTTTTTAAAAAATT 6 94 0 AAAGAATTTT 0.913828 -207 TATTTTTAAAAAGAGATTTTTGAATACTAAC 6 150 0 AAAGATTTTT 0.940872 -151 AACTTTTAGTAACCTATTTTTAAAAAGAGAT 6 164 0 AACTATTTTT 0.920077 -137 AAGAAATAATAATATATTTTTTCTTAAACTC 10 21 0 AAATATTTTT 0.820454 -94 CTCTTCAATCAAGCGAATTTTAAGTTTATTG 11 41 0 AACGAATTTT 0.966767 -27 TAAAATTTTAAAGAGAGTTTTAAAAA 16 6 0 AAAGAGTTTT 0.808688 -133 TTTTATCAAACAACGCTTTTTAAGAGTGGCT 16 63 1 CACGCTTTTT 0.875099 -76 ** ******** Masking position 2 Map Score: 13.4466 Number of sites scoring better than the average of aligned sites = 843 Number in coding regions = 727 Number in noncoding regions = 116 Number of orfs with sites within 600 bp upstream = 89 Fraction of orfs with sites within 600 bp upstream = 0.0142949 Motif number 4 ATTAAAATTCGTTTGTTTTTAAAACGCTTA 1 36 1 GTTTGTTTTT 0.65321 -86 TAAAATTCTTGCATTTCTTTTTGTTATAAT 1 73 1 GCATTTCTTT 0.591075 -49 TGTTATAATGGCGTTATTTTACACTTTAAA 1 94 1 GCGTTATTTT 0.927845 -28 TTAATATTCTGCATGTTTTTAAACATTATC 2 176 1 GCATGTTTTT 0.916676 -73 ACTAAACCTTAATCTTTAAATTAGCC 4 43 0 CCTTAATCTT 0.656611 -16 AACAACTTTTGCTTTATTTTGCATAGATTG 5 163 1 GCTTTATTTT 0.971019 -45 TTATAAAACGCTTTATTTTGACAAGTATC 6 10 1 GCTTTATTTT 0.971019 -291 CTTTTTTGCTCCTTGTTTTTAATGAGAGTT 6 281 0 CCTTGTTTTT 0.89818 -20 GGCTTGATCTTGGAGTTAAGG 7 2 1 GCTTGATCTT 0.97148 -62 TGGCATTGTAGCATGACTTTATTAGGGTGG 8 36 1 GCATGACTTT 0.884243 -113 ATAGTTTCAGGCGTGATTGTATCTAAAAAG 9 14 0 GCGTGATTGT 0.805602 -38 CAGTCTTTTCCCTTTATTTTTTGATAATCG 10 94 0 CCTTTATTTT 0.905226 -21 GTTTTTGAAGGCTTGATTTTTAAAGTTAGG 15 12 1 GCTTGATTTT 0.98667 -92 TTAAAGTTAGGCTTAATCTTTTATGTTAAA 15 31 1 GCTTAATCTT 0.870256 -73 ********** Masking position 4 Map Score: 12.9968 Number of sites scoring better than the average of aligned sites = 1139 Number in coding regions = 1014 Number in noncoding regions = 125 Number of orfs with sites within 600 bp upstream = 93 Fraction of orfs with sites within 600 bp upstream = 0.0149374 Motif number 5 AACAAACGAATTTTAATCAAAATGAGATTTAAG 1 20 0 TTTTAAAAAT 0.885636 -102 AATGCAAGAATTTTAGCTATGATAAGCGTTTTA 1 55 0 TTTTAGAGAT 0.911231 -67 CTTGCATTTCTTTTTGTTATAATGGCGTTATTT 1 80 1 TTTTTGAAAT 0.943677 -42 AAACGATGCGTTTTTTCTATTATAATTTAAGGC 2 11 0 TTTTTTATAT 0.746424 -238 AAATTAGCTTTTCTTGCTATAATCATCGTTTCA 2 51 1 TTCTTGAAAT 0.876338 -198 TTCTGCATGTTTTTAAACATTATCGCTCCCATT 2 182 1 TTTTAAATAT 0.858829 -67 TCCTAGCGTGTTTAAGCAAGTATTTATTTTACC 2 217 0 TTTAAGATAT 0.791979 -32 TTTTTACTATAATCTCTACTGAA 3 1 1 TTTTTAAAAT 0.903276 -40 ATCGACCAAATTCATAAGAAAATAGGGGGTTTT 5 72 0 TTCATAAAAT 0.57773 -136 CCTAAATAGCTTTTTAGAATGATTGGTTGCGGA 5 130 0 TTTTTAAGAT 0.873493 -78 GCTAAAAGAATTTTTTAAAAAATTAAATAGCTT 6 85 0 TTTTTTAAAT 0.788749 -216 TTTAATTTTTTTCTAGTTAGTATTCAAAAATCT 6 135 1 TTCTAGATAT 0.821461 -166 TGATTAAAGATTTTAACCACTATTGTAGAAAAA 6 229 1 TTTTAAATAT 0.85883 -72 TGTTAAAAGTTTCTTTCAATTATACTAAAATAA 8 102 0 TTCTTTATAT 0.552345 -47 CCCCTTTTTAGATACAATCACGCCTGAA 9 6 1 TTTTAGAAAT 0.933245 -46 TTTAATTGAGTTTAAGAAAAAATATATTATTAT 10 14 1 TTTAAGAAAT 0.829015 -101 ACTTAGCCATTTTAAGCTAATATAATATAGAGC 10 62 1 TTTAAGATAT 0.791978 -53 ATAATTTTATTTTTTAAAAGGATACCC 13 14 1 TTTTTAAGAT 0.873597 -17 GGCTTAATCTTTTATGTTAAAATTCTGAGATTT 15 40 1 TTTATGAAAT 0.853006 -64 TAGAACAAGGTTTTTATGACGAT 16 126 1 TTTTTAAGAT 0.873603 -13 ****** * *** Masking position 2 Map Score: 23.4894 Number of sites scoring better than the average of aligned sites = 694 Number in coding regions = 522 Number in noncoding regions = 172 Number of orfs with sites within 600 bp upstream = 173 Fraction of orfs with sites within 600 bp upstream = 0.0277867 Motif number 6 CAAAATGAGATTTAAGGGTTAAAGA 1 6 0 TTTAAGGGTT 0.598093 -116 GTTTCACTTCTTTAAAAGTGCTCGTAGCTC 2 78 1 TTTAAAAGTG 0.875532 -171 TATTATATTGTATTAGAGTAATCTTTTAGC 4 11 0 TATTAGAGTA 0.580734 -48 TCTAATACAATATAATAGGGGCTAATTTAA 4 24 1 TATAATAGGG 0.68679 -35 CACCATGCGATCTTAGGGGGTTGATACTTG 6 32 0 TCTTAGGGGG 0.925427 -269 GTCGTTTTAATTTTAGGGGGTTAT 7 50 1 TTTTAGGGGG 0.945739 -14 AGCATGACTTTATTAGGGTGGGTAAAAATT 8 45 1 TATTAGGGTG 0.894242 -104 AAACTATCCATTTAAAGGTGTGAAA 9 37 1 TTTAAAGGTG 0.895276 -15 ATTCGCTTGATTGAAGAGGGTTGA 11 54 1 TTGAAGAGGG 0.733693 -14 TTGAGTTGGCTATTAAGGGGGC 12 3 0 TATTAAGGGG 0.823057 -63 AATTTTATTTTTTAAAAGGATACCC 13 16 1 TTTAAAAGGA 0.629903 -15 TTATATGGTATCTTAAAGTAAAATTTTAAA 16 25 0 TCTTAAAGTA 0.430889 -114 AACAACGCTTTTTAAGAGTGGCTCAAGGGC 16 71 1 TTTAAGAGTG 0.939541 -68 AAAACCTTGTTCTAATAGTGGTCTTATTCT 16 110 0 TCTAATAGTG 0.685414 -29 ********** Masking position 5 Map Score: 6.47151 Number of sites scoring better than the average of aligned sites = 1609 Number in coding regions = 1386 Number in noncoding regions = 223 Number of orfs with sites within 600 bp upstream = 156 Fraction of orfs with sites within 600 bp upstream = 0.0250562 Motif number 7 CGAGCACACCATTTCTTAATATTCTGCATGT 2 161 1 ATTTCTTATA 0.924765 -88 CATAGATTGAATTTCTTTAAATTAAAGGATA 5 184 1 ATTTCTTAAA 0.86441 -24 AAGCTATTTAATTTTTTAAAAAATTCTTTTA 6 85 1 ATTTTTTAAA 0.919365 -216 TATCAATTTAATTTTTTTCTAGTTAGTATTC 6 129 1 ATTTTTTCTA 0.805471 -172 TTAAAAAGAGATTTTTGAATACTAACTAGAA 6 145 0 ATTTTTGATA 0.904338 -156 TTAGTAACCTATTTTTAAAAAGAGATTTTTG 6 159 0 ATTTTTAAAA 0.759848 -142 CATTTTAATTATTTTAGTATAATTGAAAGAA 8 94 1 ATTTTAGATA 0.679305 -55 ATAATAATATATTTTTTCTTAAACTCAATTA 10 16 0 ATTTTTTTTA 0.736406 -99 ATATATTATTATTTCTTTATAAGTAATACTT 10 35 1 ATTTCTTATA 0.924766 -80 TTTTCCCTTTATTTTTTGATAATCGCTCTAT 10 88 0 ATTTTTTATA 0.956497 -27 TTATAATTTTATTTTTTAAAAGGATACCC 13 12 1 ATTTTTTAAA 0.919365 -19 AAATCTCAGAATTTTAACATAAAAGATTAAG 15 42 0 ATTTTAAATA 0.577953 -62 ******* *** Masking position 1 Map Score: 10.8788 Number of sites scoring better than the average of aligned sites = 409 Number in coding regions = 301 Number in noncoding regions = 108 Number of orfs with sites within 600 bp upstream = 90 Fraction of orfs with sites within 600 bp upstream = 0.0144555 Motif number 8 GCTTATCATAGCTAAAATTCTTGCATTTCT 1 61 1 GCTAAAATTC 0.882145 -61 CATCGTTTAAGTGAAAAATTAGCTTTTCTT 2 36 1 GTGAAAAATT 0.681984 -213 GCTAAAAGATTACTCTAATA 4 1 1 GCTAAAAGAT 0.78066 -58 AGATCGCATGGTGAAAAATTATCGCCTGCT 6 49 1 GTGAAAAATT 0.681984 -252 CATTAAAAAAGCTAAAAGAATTTTTTAAAA 6 98 0 GCTAAAAGAA 0.274707 -203 AAAATAGGTTACTAAAAGTTACTAATAAGT 6 175 1 ACTAAAAGTT 0.759278 -126 TTACTAATAAGTTAAAATTCATTAAAATAA 6 193 1 GTTAAAATTC 0.860311 -108 TACAATAGTGGTTAAAATCTTTAATCATTA 6 226 0 GTTAAAATCT 0.679986 -75 AACGACTAACGCTAAAATTTTAAACCTTAA 7 26 0 GCTAAAATTT 0.946533 -38 TATTAGGGTGGGTAAAAATTTTACTCCATT 8 55 1 GGTAAAAATT 0.786911 -94 TGAATTGTTTGTTAAAAGTTTCTTTCAATT 8 114 0 GTTAAAAGTT 0.944052 -35 GTTACAATAAACTTAAAATTCGCTTGATTG 11 37 1 ACTTAAAATT 0.205816 -31 GTTATAATTTTATTTTTTAA 13 1 1 GTTATAATTT 0.554839 -30 AATCTTTTATGTTAAAATTCTGAGATTTTA 15 45 1 GTTAAAATTC 0.860311 -59 TAGGTTTTAGGTTTAAAGTT 15 94 1 GTTTAAAGTT 0.731461 -10 GGTATCTTAAAGTAAAATTTTAAAGAGAGT 16 19 0 AGTAAAATTT 0.490664 -120 ********** Masking position 6 Map Score: 5.95141 Number of sites scoring better than the average of aligned sites = 827 Number in coding regions = 710 Number in noncoding regions = 117 Number of orfs with sites within 600 bp upstream = 88 Fraction of orfs with sites within 600 bp upstream = 0.0141343 Motif number 9 ATTTTAGCTATGATAAGCGTTTTAAAAACA 1 49 0 TGATAAGCGT 0.753244 -73 CGATAACCTTTAAAAAGCGTTATGGGGTGG 5 36 1 TAAAAAGCGT 0.982257 -172 AAGTTGTTCCTAAATAGCTTTTTAGAATGA 5 141 0 TAAATAGCTT 0.956055 -67 TTATAAAACGCTTTATTTTGACA 6 4 1 TAAAACGCTT 0.902629 -297 TTTAAAAAATTAAATAGCTTGCACTAAGCA 6 75 0 TAAATAGCTT 0.956055 -226 CTCGCCCCACTTAATAGCGTTGAGTTGGCT 12 22 0 TTAATAGCGT 0.877513 -44 GAGCCACTCTTAAAAAGCGTTGTTTGATAA 16 65 0 TAAAAAGCGT 0.982257 -74 ATCGTCATAAAAACCTTGTTCTAATAG 16 122 0 TAAAAACCTT 0.85243 -17 ********** Masking position 3 Map Score: 6.80985 Number of sites scoring better than the average of aligned sites = 403 Number in coding regions = 335 Number in noncoding regions = 68 Number of orfs with sites within 600 bp upstream = 52 Fraction of orfs with sites within 600 bp upstream = 0.00835207 Motif number 10 CTTAAATCTCATTTTGATTAAAATTCGTTT 1 20 1 ATTTTGATTA 0.556367 -102 GCTACGAGCACTTTTAAAGAAGTGAAACGA 2 76 0 CTTTTAAAGA 0.646282 -173 ATTCTGCATGTTTTTAAACATTATCGCTCC 2 181 1 TTTTTAAACA 0.643778 -68 CCCATAACGCTTTTTAAAGGTTATCGCTCA 5 32 0 TTTTTAAAGG 0.924279 -176 TTGGTCGATCTTTTTGATTAACAAAACTTT 5 96 1 TTTTTGATTA 0.816664 -112 CTAAATAGCTTTTTAGAATGATTGGTTGCG 5 132 0 TTTTAGAATG 0.231489 -76 GCTATTTAATTTTTTAAAAAATTCTTTTAG 6 87 1 TTTTTAAAAA 0.485497 -214 TCTTTTAGCTTTTTTAATGTTATCAATTTA 6 109 1 TTTTTAATGT 0.723372 -192 TAAAAAGAGATTTTTGAATACTAACTAGAA 6 145 0 TTTTTGAATA 0.843036 -156 CAAAAATCTCTTTTTAAAAATAGGTTACTA 6 159 1 TTTTTAAAAA 0.485497 -142 CATTATGATTATTTTAATGAATTTTAACTT 6 201 0 ATTTTAATGA 0.796887 -100 TTGCTCCTTGTTTTTAATGAGAGTTTTTGC 6 276 0 TTTTTAATGA 0.932059 -25 TTAACCGGTCATTTTAATTATTTTAGTATA 8 85 1 ATTTTAATTA 0.622908 -64 TTTTTTAATTGAGTTTAAGAA 10 2 1 TTTTTAATTG 0.827965 -113 TTCCCTTTATTTTTTGATAATCGCTCTATA 10 87 0 TTTTTGATAA 0.751757 -28 ATAATTTTATTTTTTAAAAGGATACCC 13 14 1 TTTTTAAAAG 0.593125 -17 GACTTTTCTTTTTTCATGGCTTGTCT 14 8 0 TTTTTCATGG 0.625421 -19 GGTTTTTGAAGGCTTGATTTTT 15 3 1 TTTTTGAAGG 0.913288 -101 GAAGGCTTGATTTTTAAAGTTAGGCTTAAT 15 18 1 TTTTTAAAGT 0.745598 -86 TTAAAGTAAAATTTTAAAGAGAGTTTTAAA 16 13 0 ATTTTAAAGA 0.815535 -126 ********** Masking position 4 Map Score: 16.377 Number of sites scoring better than the average of aligned sites = 2321 Number in coding regions = 1816 Number in noncoding regions = 505 Number of orfs with sites within 600 bp upstream = 273 Fraction of orfs with sites within 600 bp upstream = 0.0438484 Motif number 11 ********** No masking Map Score: 9.54559e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ********** No masking Map Score: 9.54559e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: 9.54559e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0