AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00360_mjan_reg_100.orf -o00360_mjan_100.ace -a/home/amcguire/genomes/ORF_mjan.txt -z/home/amcguire/genomes/mjan.fna -g0.31 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.31 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 MJ0002 300 M. jannaschii predicted coding region MJ0002 #2 MJ0102 300 Phenylacrylic acid decarboxylase #3 MJ0140 138 conserved hypothetical protein #4 MJ0684 68 aspartate aminotransferase (aspB2) #5 MJ0955 48 histidinol-phosphate aminotransferase (hisC) #6 MJ1054 300 UDP-glucose dehydrogenase, putative #7 MJ1159 36 replication factor A related protein #8 MJ1160 56 amidase #9 MJ1530 178 ribosomal protein S18 alanine acetyltransferase #10 MJ1656 300 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE) Motif number 1 CCATGGTTTGTTGATAATGGTTTTCACCAATCCC 1 13 0 TTTAATTTTT 0.945765 -288 GACGCATTGATTGGATATATTATATTTAGTGCTA 1 67 0 TTATATTATA 0.687286 -234 ATATAATTTTTTATAATTGGTATTTTGATGCTCT 1 197 0 TTAATTTATT 0.80442 -104 TTATGTAATTTTTTATATAATTTTTTATAATTGG 1 211 0 TTATATTTTT 0.944878 -90 CCAATTAGAATTTCTAATAATTTTGGAGATATTA 1 264 1 TTTAATTTTT 0.945765 -37 GAAAACTCTTTTAGTTTTCATTTAACCGAAGCGT 2 85 1 TTTTTTTTTA 0.633129 -216 CTGAAAGATTTTGTTTAACTTTTTCTAAAAGTTT 2 138 1 TTTTAATTTT 0.865265 -163 TCGGCACCATTTTATTATTTTATTTTAGGTTGTT 2 188 1 TTTTATTATT 0.937651 -113 TTTTAGGTTGTTATATTTATTTTTTTAGATTTAT 2 210 1 TTATTTTTTT 0.880622 -91 GATTAACTATTTTTAAATAGTATTTATTTTTTAA 2 245 1 TTAAATTATT 0.90528 -56 AGTTTATTATTTTTTATCAATATTTA 3 3 1 TTTTATTTTA 0.800223 -136 CAAGTTAAGTTTTTATTAAATATTGATAAAAAAT 3 19 0 TTATTATATT 0.602335 -120 AACAAGTGAATTTTAAAACTTATTATAGGGACTG 3 54 0 TTAAAATATT 0.738903 -85 TTATTATTAATTAATAATACTTTTCGTGGTGGCA 4 15 0 TTTAATTTTT 0.945764 -54 AGAAATCTTATTTAAAATATTTTTGGTTAAAAAT 5 24 1 TTAAATTTTT 0.93235 -25 AAATATAGCATTACTTATAATTTTCGTTATCAAT 6 147 0 TTTTATTTTT 0.955924 -154 AGTTTATTTATTAATAATTGTATAATATTATTAT 6 265 0 TTTAATTATA 0.69096 -36 AATTCTATTCAAAATAATTTTTTATGGTGAT 7 8 1 TTAAATTTTT 0.932353 -29 TTGACTTATATTTATTTATTTTTTG 8 2 0 TTTTTATTTT 0.734303 -55 GTAAATTTTTTTGGTTATAATATTGACTTATATT 8 24 0 TTTTATTATT 0.937654 -33 TTATAGAGTCTTTTAAAACATTTTGAAATACTAA 9 52 0 TTAAAATTTT 0.803192 -127 TTTAGTATTATTTTAAATTCTTTTTATAGAGTCT 9 75 0 TTAAATTTTT 0.932353 -104 AAATTCTATTTTAATTTTAGTATTATTTTAAATT 9 90 0 TTTTTTTATT 0.866171 -89 TCAATGAATGTTGTGTAATTTATTAAATTCTATT 9 114 0 TTGTAATATT 0.526508 -65 GGACTTTTATTTGTGTATTATTTTAGACACTTTT 10 38 1 TTGTATTTTT 0.844127 -263 GCTATAAGCTTTGGTTTTGATATTGAAGAACTAT 10 81 1 TTTTTTTATT 0.866171 -220 GAACTATCTCTTAATATTGATTTTGAGGAGGAAT 10 108 1 TTTATTTTTT 0.882416 -193 ** **** **** Masking position 11 Map Score: 35.3677 Number of sites scoring better than the average of aligned sites = 1931 Number in coding regions = 1387 Number in noncoding regions = 544 Number of orfs with sites within 600 bp upstream = 389 Fraction of orfs with sites within 600 bp upstream = 0.0624799 Motif number 2 CAAAATACCAATTATAAAAAATTATATAAAAAAT 1 204 1 ATTTAAAATA 0.805204 -97 CATAAGTCCTATTATAAAATACTACCAATTAGAA 1 240 1 ATTTAAAATA 0.805204 -61 CAAACGAAACTTTTAGAAAAAGTTAAACAAAATC 2 144 0 TTTAAAAATT 0.888738 -157 TGTTATATTTATTTTTTTAGATTTATGGATTAAC 2 218 1 ATTTTTAATT 0.759657 -83 AATAAATACTATTTAAAAATAGTTAATCCATAAA 2 239 0 ATTAAAAATT 0.958637 -62 TTTATTAAATATTGATAAAAAATAATAAACT 3 8 0 ATTAAAAATA 0.907304 -131 TTTATCAATATTTAATAAAAACTTAACTTGACAG 3 23 1 TTTAAAAATT 0.888738 -116 TATAATAAGTTTTAAAATTCACTTGTTCTAACTC 3 61 1 TTTAATTATT 0.496086 -78 TATAGTGAATATTATATTAGAGTTAGAACAAGTG 3 80 0 ATTTTTAATT 0.759657 -59 AGGAATTATTATTAATTAATAATACTTTTCGTGG 4 20 0 ATTATAAATA 0.8758 -49 GACATCACCATTTATAAACACTAAAAGGAATTA 4 46 0 ATTAAAAATA 0.907306 -23 CCAAAAATATTTTAAATAAGATTTCTGGATTTTT 5 16 0 TTTATAAATT 0.851961 -33 ATTAAAGAGGTTTTAAATAGATTTCCAAGTAATA 6 28 1 TTTAATAATT 0.781662 -273 ACCGTATCGAATTTACTATTACTTGGAAATCTAT 6 44 0 ATTATATATT 0.821177 -257 GTAATGCTATATTTACAATTAATTGTTGGAGGAG 6 167 1 ATTAAATATT 0.864367 -134 CCCTGAGTTTATTTATTAATAATTGTATAATATT 6 270 0 ATTATAAATT 0.940953 -31 AATTCTATTCAAAATAATTTTTTATGGTGA 7 7 1 ATTAAATATT 0.864384 -30 TGGTTATAATATTGACTTATATTTATTTATTTTT 8 13 0 ATTATTAATT 0.882139 -44 CTTTTAAAACATTTTGAAATACTAAGGACCAATA 9 43 0 ATTTAAAATA 0.805204 -136 TAATACTAAAATTAAAATAGAATTTAATAAATTA 9 99 1 ATTAATAATT 0.912191 -80 CACAACATTCATTGATTAAAATTATTCAAAGGCT 9 133 1 ATTATAAATA 0.87581 -46 TGGACTTTTATTTGTGTATTATTTTAGACACTTT 10 37 1 TTTTTATATT 0.40059 -264 CAAAATCAATATTAAGAGATAGTTCTTCAATATC 10 99 0 ATTAAGAATT 0.733987 -202 TATTTAAGAGATTGTTTTATAATTTTAGAGGACT 10 212 1 ATTTTTAATT 0.759621 -89 *** * *** * ** Masking position 3 Map Score: 29.0486 Number of sites scoring better than the average of aligned sites = 1317 Number in coding regions = 932 Number in noncoding regions = 385 Number of orfs with sites within 600 bp upstream = 304 Fraction of orfs with sites within 600 bp upstream = 0.0488275 Motif number 3 TATTGGATTTTTAATATCTCCAAAATTATTAG 1 277 0 TTAATCTCCA 0.895431 -24 GGAAATCTATTTAAAACCTCTTTAATCTTGTG 6 22 0 TTAAACTCTT 0.913211 -279 GTTAGTTGAGTAAAAAGCTCCATAATGTTCTA 6 79 1 TAAAACTCCA 0.93729 -222 GGCTGTTAAGTTAACGACTTCACCCAATTGTA 6 109 0 TTAACCTTCA 0.862056 -192 AGTCGTTAACTTAACAGCCTCTGGTATTGATA 6 122 1 TTAACCCTCT 0.831572 -179 AACTCCAAAATAAACTACTCCTCCAACAATTA 6 186 0 TAAACCTCCT 0.969126 -115 TAAGGACCAATAAACACCCCCTTTATGAAAGC 9 23 0 TAAACCCCCT 0.940641 -156 CAAAATGTTTTAAAAGACTCTATAAAAAGAAT 9 61 1 TAAAACTCTA 0.811178 -118 TAGTATTATTTTAAATTCTTTTTATAGAGTCT 9 75 0 TTAAACTTTT 0.676883 -104 AACAGCTCCATTAATTCCTCCTCAAAATCAAT 10 123 0 TTAATCTCCT 0.93056 -178 AATCTCTTTTTTAACAGCTCCATTAATTCCTC 10 135 0 TTAACCTCCA 0.969126 -166 TTTGGGAACTTTAAAATCTCTTTTTTAACAGC 10 149 0 TTAAACTCTT 0.913211 -152 TAAATGCATCTAAAACTCCCCTACTGAATTCA 10 274 0 TAAAACCCCT 0.921926 -27 ***** ***** Masking position 4 Map Score: 13.9222 Number of sites scoring better than the average of aligned sites = 639 Number in coding regions = 598 Number in noncoding regions = 41 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822 Motif number 4 TCTCCAAAATTATTAGAAATTCTAATTGGT 1 263 0 TATTAGAAAT 0.55859 -38 TTTCTAATAATTTTGGAGATATTAAAAATC 1 274 1 TTTTGGAGAT 0.93217 -27 GCTATTGGATTTTTAATATCTC 1 289 0 TATTGGATTT 0.830477 -12 ATGAAAACTCTTTTAGTTTTCATTTAACCG 2 83 1 TTTTAGTTTT 0.867429 -218 AAACAAAATCTTTCAGATTTTGTAGCCCGA 2 124 0 TTTCAGATTT 0.717163 -177 ATATTTATTTTTTTAGATTTATGGATTAAC 2 222 1 TTTTAGATTT 0.949208 -79 GTGAATATTATATTAGAGTTAGAACAAGTG 3 80 0 TATTAGAGTT 0.913046 -59 AGAAAGTATTTATTAGATATAGTGAATATT 3 101 0 TATTAGATAT 0.800183 -38 TAATAATTCCTTTTAGTGTTTATAAATGGT 4 43 1 TTTTAGTGTT 0.913047 -26 TAAATAAGATTTCTGGATTTTTTATTA 5 8 0 TTCTGGATTT 0.639566 -41 GAGTAGTTTATTTTGGAGTTTATTTAGCTG 6 198 1 TTTTGGAGTT 0.957364 -103 CCGTAAATTTTTTTGGTTATAATATTGACT 8 30 0 TTTTGGTTAT 0.749891 -27 TCTATTTTAATTTTAGTATTATTTTAAATT 9 90 0 TTTTAGTATT 0.67402 -89 TTTTAGACACTTTTAGAGATGAGGCTATAA 10 58 1 TTTTAGAGAT 0.948334 -243 AAAAAAGAGATTTTAAAGTTCCCAAAAACA 10 155 1 TTTTAAAGTT 0.613187 -146 TAACTTATTATTTAAGAGATTGTTTTATAA 10 204 1 TTTAAGAGAT 0.626909 -97 ********** Masking position 1 Map Score: 14.2384 Number of sites scoring better than the average of aligned sites = 1037 Number in coding regions = 891 Number in noncoding regions = 146 Number of orfs with sites within 600 bp upstream = 120 Fraction of orfs with sites within 600 bp upstream = 0.019274 Motif number 5 CATTAATAGAGCATCAAAATACCAATTATA 1 190 1 GCATCAAAAT 0.863287 -111 GCTTTCCATTTCATCAAAATAGGATGCATT 2 39 0 TCATCAAAAT 0.959635 -262 GACATCACCATTTATAAACAC 4 58 0 ACATCACCAT 0.943618 -11 AAATCATCACCATAAAAAATTAT 7 24 0 TCATCACCAT 0.989406 -13 CTCATCACCGTAAATTTTTTT 8 46 0 TCATCACCGT 0.966371 -11 CATTAATTCCTCCTCAAAATCAATATTAAG 10 117 0 TCCTCAAAAT 0.847438 -184 TAATGATTCATTATCAACCTCTGTTTTTGG 10 176 0 TTATCAACCT 0.801073 -125 ATCTAAATAATCATCAACATAGTCCTCTAA 10 236 0 TCATCAACAT 0.986402 -65 CCTACTGAATTCATCACCCTCATCTAAATA 10 257 0 TCATCACCCT 0.981442 -44 ********** Masking position 6 Map Score: 9.65282 Number of sites scoring better than the average of aligned sites = 201 Number in coding regions = 182 Number in noncoding regions = 19 Number of orfs with sites within 600 bp upstream = 16 Fraction of orfs with sites within 600 bp upstream = 0.00256987 Motif number 6 TTTAATTAACTAAACGCTAAATATTCTCCAT 1 122 1 TAACGCTAAA 0.836764 -179 TGGATTTTTAATATCTCCAAAATTATTAGAA 1 275 0 AATCTCCAAA 0.577968 -26 TTCGGTTAAATGAAAACTAAAAGAGTTTTCA 2 84 0 TAAAACTAAA 0.927369 -217 AAAATAAATATAACAACCTAAAATAAAATAA 2 202 0 TACAACCTAA 0.694152 -99 TAGTTAATCCATAAATCTAAAAAAATAAATA 2 223 0 AAAATCTAAA 0.747702 -78 TATTTATTTTTTAAATCTTAACTTAACAGTT 2 265 1 TAAATCTTAA 0.806225 -36 CAATATTTAATAAAAACTTAACTTGACAGTC 3 28 1 TAAAACTTAA 0.829492 -111 TCACCATTTATAAACACTAAAAGGAATTATT 4 44 0 TAACACTAAA 0.912945 -25 CCTCTGGTATTGATAACGAAAATTATAAGTA 6 139 1 TATAACGAAA 0.580021 -162 TACAGCTAAATAAACTCCAAAATAAACTACT 6 199 0 TAACTCCAAA 0.916679 -102 AGACATAAAATTACAGCTAAATAAACTCCAA 6 210 0 TACAGCTAAA 0.705481 -91 TAAGTCAATATTATAACCAAAAAAATTTACG 8 28 1 TATAACCAAA 0.877809 -29 GAGAAAAATCCTAATCTATATAAC 10 4 1 AAAATCCTAA 0.578513 -297 GCTTATAGCCTCATCTCTAAAAGTGTCTAAA 10 59 0 TATCTCTAAA 0.807349 -242 TTCTTCAATATCAAAACCAAAGCTTATAGCC 10 80 0 TAAAACCAAA 0.93946 -221 * ********* Masking position 3 Map Score: 7.51169 Number of sites scoring better than the average of aligned sites = 762 Number in coding regions = 639 Number in noncoding regions = 123 Number of orfs with sites within 600 bp upstream = 121 Fraction of orfs with sites within 600 bp upstream = 0.0194346 Motif number 7 TTTTTTATATAATTTTTTATAATTGGTATT 1 207 0 AATTTTTTAT 0.930146 -94 GGACTTATGTAATTTTTTATATAATTTTTT 1 219 0 AATTTTTTAT 0.930146 -82 AATTGGTAGTATTTTATAATAGGACTTATG 1 240 0 ATTTTATAAT 0.70881 -61 TACCAATTAGAATTTCTAATAATTTTGGAG 1 262 1 AATTTCTAAT 0.603979 -39 GCTATTGGATTTTTAATATCTCCAAAA 1 284 0 GATTTTTAAT 0.68739 -17 CCTCGGCACCATTTTATTATTTTATTTTAG 2 186 1 ATTTTATTAT 0.81621 -115 TTAACTTAACAGTTTTTAATGGTGAATTT 2 282 1 AGTTTTTAAT 0.646147 -19 AGTTTATTATTTTTTATCAA 3 1 1 AGTTTATTAT 0.786415 -138 CTGTCAAGTTAAGTTTTTATTAAATATTGA 3 27 0 AAGTTTTTAT 0.598964 -112 TGAATTTTAAAACTTATTATAGGGACTGTC 3 52 0 AACTTATTAT 0.752711 -87 AATTATTATTAATTAATAATACTTTTCGTG 4 21 0 AATTAATAAT 0.607622 -48 AAGATTTCTGGATTTTTTATTA 5 3 0 GATTTTTTAT 0.800148 -46 GAATTTATTATCACAAGATTA 6 2 1 AATTTATTAT 0.936491 -299 AACCGTATCGAATTTACTATTACTTGGAAA 6 49 0 AATTTACTAT 0.597206 -252 AATATTATACAATTATTAATAAATAAACTC 6 270 1 AATTATTAAT 0.583053 -31 TATTCAAAATAATTTTTTATGGTGATGATT 7 16 1 AATTTTTTAT 0.930146 -21 ATTGACTTATATTTATTTATTTTTTG 8 7 0 ATTTATTTAT 0.43403 -50 AATGTTGTGTAATTTATTAAATTCTATTTT 9 112 0 AATTTATTAA 0.50009 -67 ATGAATCATTAACTTATTATTTAAGAGATT 10 195 1 AACTTATTAT 0.752711 -106 TTAAGAGATTGTTTTATAATTTTAGAGGAC 10 215 1 GTTTTATAAT 0.423098 -86 ********** Masking position 4 Map Score: 17.9858 Number of sites scoring better than the average of aligned sites = 1023 Number in coding regions = 710 Number in noncoding regions = 313 Number of orfs with sites within 600 bp upstream = 297 Fraction of orfs with sites within 600 bp upstream = 0.0477032 Motif number 8 AGGCATTGCCGAGCGTAGCGAGGCAATGCA 2 15 1 GAGCGTAGCG 0.966137 -286 CATAGCTGGAAAGCGTAGCTTTCCATTTCA 2 56 0 AAGCGTAGCT 0.956305 -245 GTTTTCATTTAACCGAAGCGTTAGCTTCGG 2 98 1 AACCGAAGCG 0.98504 -203 AGATTTTGTAGCCCGAAGCTAACGCTTCGG 2 110 0 GCCCGAAGCT 0.926972 -191 CTCAACTAACAACCGTATCGAATTTACTAT 6 59 0 AACCGTATCG 0.910603 -242 TCAATATCAAAACCAAAGCTTATAGCCTCA 10 77 0 AACCAAAGCT 0.866269 -224 ********** Masking position 7 Map Score: 1.02729 Number of sites scoring better than the average of aligned sites = 41 Number in coding regions = 11 Number in noncoding regions = 30 Number of orfs with sites within 600 bp upstream = 21 Fraction of orfs with sites within 600 bp upstream = 0.00337295 Motif number 9 AATATATCCAATCAATGCGTCAACAAACAAT 1 80 1 ATCAATGCTC 0.938436 -221 ATAATCAGTTCTCAATGTTTCTCTAATTGGA 1 151 1 CTCAATGTTC 0.974693 -150 CGCTACGCTCGGCAATGCCTCTTA 2 4 0 GGCAATGCTC 0.965491 -297 AGCGTAGCGAGGCAATGCATCCTATTTTGAT 2 26 1 GGCAATGCTC 0.965491 -275 TTAACTTTTTCTAAAAGTTTCGTTTGTATCC 2 152 1 CTAAAAGTTC 0.890261 -149 AGCCTCATCTCTAAAAGTGTCTAAAATAATA 10 53 0 CTAAAAGTTC 0.89026 -248 CTCCCTAAATGCATCTAAAACTCCC 10 286 0 CTAAATGCTC 0.974693 -15 ******** ** Masking position 5 Map Score: 2.98649 Number of sites scoring better than the average of aligned sites = 52 Number in coding regions = 41 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 6 Fraction of orfs with sites within 600 bp upstream = 0.000963701 Motif number 10 GTTTCGTTTGTATCCCTCCCTCGGCACCATTTT 2 168 1 TACCCTCTCG 0.919587 -133 ATTATCCCTCCCATAGTTAGAAAGT 3 124 0 TACCCTCATA 0.960461 -15 CAAAATAAACTACTCCTCCAACAATTAATTGTA 6 180 0 TATCCTCACA 0.987748 -121 CTTACATCGATAACCCTCAGACATAAAATTACA 6 226 0 TACCCTCACA 0.992172 -75 AATATTATTATATTTCTCTTACATCGATAACCC 6 243 0 TATTCTCACA 0.925775 -58 ATCATCAACATAGTCCTCTAAAATTATAAAACA 10 224 0 TATCCTCAAA 0.939207 -77 ** ***** *** Masking position 7 Map Score: 0.484435 Number of sites scoring better than the average of aligned sites = 41 Number in coding regions = 35 Number in noncoding regions = 6 Number of orfs with sites within 600 bp upstream = 6 Fraction of orfs with sites within 600 bp upstream = 0.000963701 Motif number 11 AACGCTAAATATTCTCCATAATCAGTTCTCA 1 134 1 ATCTCCATAA 0.960502 -167 TGGTATTTTGATGCTCTATTAATGGGTGGTT 1 183 0 AGCTCTATTA 0.864499 -118 AAATTCACCATTAAAAACTGTTA 2 288 0 ATCACCATTA 0.898607 -13 TTAACTTGACAGTCCCTATAATAAGTTTTAA 3 45 1 ATCCCTATAA 0.823788 -94 CTAATATAATATTCACTATATCTAATAAATA 3 94 1 ATCACTATAT 0.557205 -45 GTTGAGTAAAAAGCTCCATAATGTTCTACAA 6 83 1 AGCTCCATAA 0.931483 -218 ACAGCTAAATAAACTCCAAAATAAACTACTC 6 198 0 AACTCCAAAA 0.531011 -103 AAATCATCACCATAAAAAATTATTT 7 22 0 CTCACCATAA 0.877312 -15 AATAAATATAAGTCAATATTATAACCAAAAA 8 20 1 ATCAATATTA 0.56935 -37 ATGTTTTAAAAGACTCTATAAAAAGAATTTA 9 65 1 AACTCTATAA 0.832346 -114 GAAAAATCCTAATCTATATAACAATGGACTT 10 13 1 ATCTATATAA 0.783904 -288 CTTATAGCCTCATCTCTAAAAGTGTCTAAAA 10 58 0 CTCTCTAAAA 0.633417 -243 TCCTCCTCAAAATCAATATTAAGAGATAGTT 10 109 0 ATCAATATTA 0.56935 -192 TCTTTTTTAACAGCTCCATTAATTCCTCCTC 10 132 0 CGCTCCATTA 0.781097 -169 * ********* Masking position 8 Map Score: 4.88391 Number of sites scoring better than the average of aligned sites = 656 Number in coding regions = 583 Number in noncoding regions = 73 Number of orfs with sites within 600 bp upstream = 74 Fraction of orfs with sites within 600 bp upstream = 0.0118856 Motif number 12 ATAATGGTTTTCACCAATCCCAG 1 4 0 TCACCAATCC 0.915293 -297 AAAACCATTATCAACAAACCATGGGAACGC 1 23 1 TCAACAAACC 0.975946 -278 AATCAATGCGTCAACAAACAATCCAAATAA 1 89 1 TCAACAAACA 0.932018 -212 CTTTTAGTTTTCATTTAACCGAAGCGTTAG 2 92 1 TCATTTAACC 0.84438 -209 AGCTTTTTACTCAACTAACAACCGTATCGA 6 68 0 TCAACTAACA 0.932018 -233 GTTCTCACTTAACCTTTAGTAAAG 9 165 0 TCACTTAACC 0.936708 -14 ********** Masking position 7 Map Score: 1.27234 Number of sites scoring better than the average of aligned sites = 44 Number in coding regions = 40 Number in noncoding regions = 4 Number of orfs with sites within 600 bp upstream = 4 Fraction of orfs with sites within 600 bp upstream = 0.000642467 Motif number 13 ********** No masking Map Score: -8.85746e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: -8.85746e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -8.85746e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0