AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00020_mtub_reg_100.orf -o00020_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 Rv0248c 30 hypothetical protein Rv0248c #2 Rv0249c 79 hypothetical protein Rv0249c #3 Rv0250c 144 hypothetical protein Rv0250c #4 Rv0458 67 hypothetical protein Rv0458 #5 Rv0460 59 hypothetical protein Rv0460 #6 Rv0461 37 hypothetical protein Rv0461 #7 Rv0462 63 hypothetical protein Rv0462 #8 lpdB 300 lpdB #9 citA 86 citA #10 Rv0891c 300 hypothetical protein Rv0891c #11 gltA2 172 gltA2 #12 sucC 300 sucC #13 fum 30 fum #14 Rv1099c 100 hypothetical protein Rv1099c #15 mdh 170 mdh #16 sucA 192 sucA #17 acn 157 acn #18 frdA 300 frdA #19 sucB 263 sucB #20 scoA 82 scoA #21 fadD35 115 fadD35 #22 pca 24 pca #23 Rv2969c 96 hypothetical protein Rv2969c #24 lipN 300 lipN #25 lpdA 202 lpdA #26 sdhC 236 sdhC #27 sdhA 128 sdhA #28 icd1 282 icd1 Motif number 1 GGTACACAGAGAACGGCCCCCTTTTTCTGG 2 24 0 GAACGGCCCC 0.628016 -56 GGACCCATCGGCCCGGCCGGATCATGCCGT 3 19 0 GCCCGGCCGG 0.989954 -126 TGGCATGATCCGGCGGACCCATCGGCCCGG 3 33 0 CGGCGGACCC 0.948547 -112 TACTAGCTATCGACGGACGGAGTCGTTGGG 3 77 0 CGACGGACGG 0.716784 -68 AACACCGCCAGCCCAGGGAGCACCCA 3 129 1 GCCCAGGGAG 0.531236 -16 CTCACACTACCGCCGGGGCCACAATGGCTT 4 13 0 CGCCGGGGCC 0.941797 -55 GCTGCCATGACCGCGGAAGGGGGATCACGG 5 29 0 CCGCGGAAGG 0.926929 -31 CATGGCAGCTGACCAGCGCG 5 50 1 GACCAGCGCG 0.693208 -10 AACGATTACCGGTCGGCACCCGGAACCGAG 6 12 1 GGTCGGCACC 0.913013 -26 TACTGGGTCAGGCCGACGAGCACTCGACCA 7 30 1 GGCCGACGAG 0.733647 -34 ACGCCGGCCGGTCCTTCTCAC 8 2 1 CGCCGGCCGG 0.988637 -299 TACTGCTCAACGCCAACCCCAAGAGGACGG 8 45 1 CGCCAACCCC 0.716993 -256 CCCAAGAGGACGGCAGACGCAAAGTGAGCC 8 62 1 CGGCAGACGC 0.846834 -239 GAACAAACCACCGCGACACGGCGTCTGTCA 8 109 1 CCGCGACACG 0.909815 -192 GTGGGCGATAGGCCGGCACGGCTCACCGGC 8 230 1 GGCCGGCACG 0.970923 -71 GCGCGCCTAGCGCCGGTGAGCCGTGCCGGC 8 241 0 CGCCGGTGAG 0.706351 -60 CGTCGGACTCTGCCAGCGACGCTACGCGCG 8 266 0 TGCCAGCGAC 0.573047 -35 CGATTCTCGCGGCACGCTCATCGCCG 9 7 1 TCGCGGCACG 0.935788 -80 GCACGCTCATCGCCGGCACCGTGATTGGCA 9 22 1 CGCCGGCACC 0.977586 -65 CCGTGATTGGCACCAGCCGGTAGCGTCGTT 9 40 1 CACCAGCCGG 0.689225 -47 TCACACCTGGCCCCGGCAACGACGCTACCG 9 57 0 CCCCGGCAAC 0.938701 -30 CGGTCGTGGGCCGCGGTAGCATCCCGCGGG 10 100 1 CCGCGGTAGC 0.909511 -201 TGGGCGCTCGCGGCGGCCCGCGGGATGCTA 10 116 0 CGGCGGCCCG 0.992368 -185 CTTCGGCGCTGCACGGTGGGCGCTCGCGGC 10 132 0 GCACGGTGGG 0.732333 -169 CTTATTGGCTTCGCGGCGCCGCGAAGGTGT 10 246 1 TCGCGGCGCC 0.977696 -55 GCCGCTGCGCGCTCGGCCGGGTGATGACTC 11 22 0 GCTCGGCCGG 0.964731 -151 CCGGCCGAGCGCGCAGCGGCTTACCTTACG 11 32 1 GCGCAGCGGC 0.985566 -141 CTTACCTTACGCGCGGCCGCCCATGGTGCC 11 51 1 GCGCGGCCGC 0.994864 -122 ACCCCACCCCGGGCAGGCGGGTCATCCCGA 11 85 1 GGGCAGGCGG 0.825716 -88 ATCAGCCAAAGCGCGAAGGGGTTCTC 11 157 1 GCGCGAAGGG 0.771482 -16 TTCAGATTTGTCCCAGCACCGTATCGCCCG 12 12 0 TCCCAGCACC 0.710678 -289 GAGACGTTATCCGCAACCGGATGGTAGTGG 12 80 1 CCGCAACCGG 0.854824 -221 CCGATTAACTCCGCGGCCGCATCCACCCGG 12 191 0 CCGCGGCCGC 0.995543 -110 TCGTCGACGGCCGCGGTGGCCAGCCACGAC 14 30 1 CCGCGGTGGC 0.963883 -71 CGGTGGCCAGCCACGACCCGTCGCACACCA 14 43 1 CCACGACCCG 0.724446 -58 GTCCGGGGCTTCCCGGCGCGATGGCCTGGT 14 69 0 TCCCGGCGCG 0.957074 -32 CGCCGGGAAGCCCCGGACCGCAACCTGGCC 14 81 1 CCCCGGACCG 0.924518 -20 ATCAGATCCACCGCGATCGGAGGTTGAC 15 9 0 CCGCGATCGG 0.666199 -162 GAAACTAGCGCACCGGCACCGGACGGACAT 15 116 0 CACCGGCACC 0.811471 -55 CAGAGAGACCGGGCAACGCGCG 16 3 0 GGGCAACGCG 0.821199 -190 GCCAGCGATTCGCCAGAGAGACCGGGCAAC 16 16 0 CGCCAGAGAG 0.470359 -177 AGCCTTTATGGGGCAGACCGTTCACCGACT 16 54 1 GGGCAGACCG 0.784704 -139 CAAGCGCATTGCGCGGCGCCTGCTGGCAGT 16 81 0 GCGCGGCGCC 0.995626 -112 CTTATGTTGGCCACGGCCGCTGTTCGCCTC 16 136 0 CCACGGCCGC 0.967664 -57 GCCAGTAGCACGTCGGCAGGAAGGATGCG 17 10 0 CGTCGGCAGG 0.925418 -148 GCCGAAGTGCGAGCAGCGCGTAACGTGCCA 17 36 0 GAGCAGCGCG 0.796813 -122 GACACCACGCCGTCGACACGGCCCGTCGGC 17 111 1 CGTCGACACG 0.55254 -47 CGACACGGCCCGTCGGCGGGCGAACCAAAT 17 124 1 CGTCGGCGGG 0.970541 -34 CTAGGTCACGTGCCAGCACCGGAGGAGGCG 18 33 1 TGCCAGCACC 0.652843 -268 GGGACTATGGTCGCGACCACTACGCACTTC 18 62 1 TCGCGACCAC 0.499522 -239 AACCATGTGCCCGCAGGGCGCTTTTTGCTT 18 95 0 CCGCAGGGCG 0.893588 -206 ACCACATCGAGCGCGACGACGAAGGCCTTG 18 135 1 GCGCGACGAC 0.876135 -166 CCGGATTTCGCGGCAGCCGCAGGAAAACTT 18 179 0 CGGCAGCCGC 0.977866 -122 CGATTCGACACGACGGCAAGGTGTTGAAGG 18 243 1 CGACGGCAAG 0.706339 -58 TGAAGGACGAGCACAGCGGCGATCACGAAG 18 267 1 GCACAGCGGC 0.901417 -34 CAACAGCAAGTCCCGGTGGGCGGAGGTGCG 19 11 0 TCCCGGTGGG 0.693858 -253 GTTGCCGACACCTCGGCGGGGACATCGGTG 19 79 0 CCTCGGCGGG 0.97729 -185 GAGTTGGTGGCCCCGGCGGCCGTTGCCGAC 19 100 0 CCCCGGCGGC 0.994339 -164 CACATCCAGGGCGCGGCGAGTTGGTGGCCC 19 117 0 GCGCGGCGAG 0.981827 -147 CTGTCACTGCGCCCGGAGCGACACACATCC 19 140 0 GCCCGGAGCG 0.935451 -124 CTCGATCGATCGTCGGTCGGCGCAGGTCCA 19 232 0 CGTCGGTCGG 0.678838 -32 CCTAGACGCACCGCGGGGGCAATGGTATTC 20 15 1 CCGCGGGGGC 0.976702 -68 ACCGCAGAGCCTCCTAGCATT 20 72 0 CCGCAGAGCC 0.894563 -11 TCTAGCGTACCGGCGGCAAGCCAGCCTCGA 23 12 0 CGGCGGCAAG 0.947264 -85 CGCGGTCAGGCGACGGCGCCTCTAGCGTAC 23 32 0 CGACGGCGCC 0.964177 -65 CGTCGCCTGACCGCGGCCGCGACAAGCCGA 23 47 1 CCGCGGCCGC 0.995543 -50 GAAGGCTGTGGCTCAGCACCTGCCCAGGTG 24 78 0 GCTCAGCACC 0.779757 -223 CAGCCTTCGGCGACGGCGGCGTAAGCCGCG 24 100 1 CGACGGCGGC 0.968999 -201 AGTCCGGCGTGCCCAACGGCCAACTCTACG 24 166 0 GCCCAACGGC 0.81973 -135 CACGCCGGACTCGCGGCACCTACCGCTTGC 24 185 1 TCGCGGCACC 0.942885 -116 GCCCGGTGTCGGCCGGCAGGACCCGAAAGA 24 213 1 GGCCGGCAGG 0.974861 -88 ACATCCAGCCTGACGGCGCGGATCGAGTGT 24 242 1 TGACGGCGCG 0.798671 -59 ACTCTGTCACGCGCAGCAACGGACACTCGA 24 264 0 GCGCAGCAAC 0.856161 -37 AAAGCTTAGACGGCGGGGGCTCGGGTGGTA 25 16 1 CGGCGGGGGC 0.970027 -187 CCGCACCGCAGCGCGGCGCGATGGGTACCA 25 41 0 GCGCGGCGCG 0.995048 -162 GATGCACGCCGCGCAGCGGCGTGAGGAGGA 25 102 0 GCGCAGCGGC 0.985566 -101 GTCCAACACAGCTCGGCGACGATGCACGCC 25 122 0 GCTCGGCGAC 0.907278 -81 GATGCACGCCGCGCAGCGGCGTGAGGAGGA 25 160 0 GCGCAGCGGC 0.985566 -43 CCATAACCTAGCTCGGCGACGATGCACGCC 25 180 0 GCTCGGCGAC 0.907278 -23 TCGGCAACCCCGCTCGTCGAT 26 2 1 CGGCAACCCC 0.814713 -235 GTGAATACAACGGCGACAACCGTCTCGCGC 26 175 1 CGGCGACAAC 0.70164 -62 GCCGCCGCCCGCGCGAGACGGTTGTCGCCG 26 185 0 GCGCGAGACG 0.552229 -52 CGTCTCGCGCGGGCGGCGGCCACCTCGGAC 26 195 1 GGGCGGCGGC 0.995083 -42 GCGGCGGCCACCTCGGACCCTGTATCGGGG 26 207 1 CCTCGGACCC 0.793816 -30 AAGGCCCGGAAGGAGCACATGAT 27 4 1 GCCCGGAAGG 0.863734 -125 CCCCGCAAGCGGGCGGTACCCCCACCTCAT 27 47 1 GGGCGGTACC 0.851769 -82 AGCGACGAGGGGGCCGCAGCGATGAGGTGG 27 68 0 GGGCCGCAGC 0.574442 -61 GTGGGGGCACCCCCAGCCGCGAAGCGACGA 27 90 0 CCCCAGCCGC 0.970802 -39 ACTGCATCGTCGGCGGCGGCG 27 118 1 CGGCGGCGGC 0.995733 -11 TTCCCCGTCTGGTCAGGGGCCCGTCATGGC 28 16 1 GGTCAGGGGC 0.540766 -267 GGGCCCGTCATGGCGGACCCGCGCTTGCCG 28 32 1 TGGCGGACCC 0.75478 -251 CGCGCTTGCCGCGCAGCCGGCGATGGCTAC 28 51 1 GCGCAGCCGG 0.977865 -232 AACCCTCCAACCGCGGTGGGGTGCCCCGGG 28 96 0 CCGCGGTGGG 0.959283 -187 CCGGCTTGCTGGCCGGCAACCCTCCAACCG 28 113 0 GGCCGGCAAC 0.910452 -170 CGCGGGCCCCTAGCGGCCGGTAAAGGGCCA 28 233 0 TAGCGGCCGG 0.713343 -50 CTAGCAGCCCGCGCGGGCCCCTAGCGGCCG 28 244 0 GCGCGGGCCC 0.958397 -39 ********** Masking position 4 Map Score: 164.356 Number of sites scoring better than the average of aligned sites = 101793 Number in coding regions = 95722 Number in noncoding regions = 6071 Number of orfs with sites within 600 bp upstream = 1572 Fraction of orfs with sites within 600 bp upstream = 0.25249 Motif number 2 ATCCGGCGGACCCATCGGCCCGGCCGGATCA 3 25 0 CCCATCGCCC 0.745671 -120 CTGTAACACCGCCAGCCCAGGGAGCACCCA 3 125 1 GCCAGCCAGG 0.828508 -20 CGTATTCGGCTCCTCGTCAAAATCATGT 4 50 0 GGCTCCCGTC 0.824061 -18 CCGCGGTCATGGCAGCTGACCAGCGCG 5 43 1 GGCAGCGACC 0.860487 -17 AAGTGAGCCAGACACCAGGTGATCCGGAACA 8 83 1 GACACCGGTG 0.838704 -218 CACCGACACACCCACCTCGCGGCACACACAA 8 139 1 CCCACCCGCG 0.98411 -162 CGGCCTATCGCCCACCAGACGCAAAAGCTCT 8 214 0 CCCACCGACG 0.88652 -87 GTCGGACTCTGCCAGCGACGCTACGCGCGCC 8 264 0 GCCAGCACGC 0.655389 -37 CACCGTGATTGGCACCAGCCGGTAGCGTCGT 9 38 1 GGCACCGCCG 0.963674 -49 CGAGAATTCTCACACCTGGCCCCGGCAACGA 9 65 0 CACACCGGCC 0.962153 -22 CTATAGTCGACGCATCTCGCGTTCTAGGCAG 10 14 1 CGCATCCGCG 0.942905 -287 CGACCGACAGCCCACCGCAGCGTCAGCGCTA 10 75 0 CCCACCCAGC 0.915714 -226 GGGCCGCGGTAGCATCCCGCGGGCCGCCGCG 10 107 1 AGCATCCGCG 0.738574 -194 GTTCGGGGAAGACACCTGGCCCATCCTCGAA 10 206 0 GACACCGGCC 0.968989 -95 TGTGCTTATTGGCTTCGCGGCGCCGCGAAGG 10 242 1 GGCTTCCGGC 0.789405 -59 TGGGGTCTCTGGCACCATGGGCGGCCGCGCG 11 60 0 GGCACCTGGG 0.685417 -113 TGCCAGAGACCCCACCCCGGGCAGGCGGGTC 11 77 1 CCCACCCGGG 0.980393 -96 CCCGGTGTGGCACAGCTCACCGATATGTTTG 12 165 0 CACAGCCACC 0.75781 -136 TGAGCTGTGCCACACCGGGTGGATGCGGCCG 12 177 1 CACACCGGTG 0.808815 -124 ACCGCCGATTAACTCCGCGGCCGCATCCACC 12 194 0 AACTCCCGGC 0.533949 -107 GACAGCTGAGGGATCCGGTTC 14 1 1 GACAGCGAGG 0.643338 -100 GTCGTGGCTGGCCACCGCGGCCGTCGACGAA 14 29 0 GCCACCCGGC 0.985394 -72 CGACCCGTCGCACACCAGGCCATCGCGCCGG 14 56 1 CACACCGGCC 0.962152 -45 TGCGGTCCGGGGCTTCCCGGCGCGATGGCCT 14 72 0 GGCTTCCGGC 0.78953 -29 CGTAACCTGGAGCACCGCCCGATCAGATCCA 15 29 0 AGCACCCCCG 0.852579 -142 GCACCGGACGGACATCTGGGGTCCAACCCCC 15 100 0 GACATCGGGG 0.806448 -71 CTAGCGCACCGGCACCGGACGGACATCTGGG 15 111 0 GGCACCGACG 0.933797 -60 AGAGAGACCGGGCAACGCGCG 16 1 0 GGCAACCGCG 0.70156 -192 TTCACCGACTGCCAGCAGGCGCCGCGCAATG 16 74 1 GCCAGCGGCG 0.950809 -119 AATCGAGGCGAACAGCGGCCGTGGCCAACAT 16 132 1 AACAGCGCCG 0.368943 -61 CTGCTAGGCTGACACCACGCCGTCGACACGG 17 101 1 GACACCCGCC 0.979975 -57 TAGGTCACGTGCCAGCACCGGAGGAGGCGGG 18 34 1 GCCAGCCCGG 0.900855 -267 CGGCGATCACCACATCGAGCGCGACGACGAA 18 127 1 CACATCAGCG 0.555755 -174 CGCACCTCCGCCCACCGGGAC 19 1 1 CGCACCCCGC 0.967759 -263 GGCCGTTGCCGACACCTCGGCGGGGACATCG 19 82 0 GACACCCGGC 0.975325 -182 GGCCGCCGGGGCCACCAACTCGCCGCGCCCT 19 109 1 GCCACCACTC 0.519952 -155 CGGAGCGACACACATCCAGGGCGCGGCGAGT 19 126 0 CACATCAGGG 0.50268 -138 GGATGTGTGTCGCTCCGGGCGCAGTGACAGG 19 140 1 CGCTCCGGCG 0.92338 -124 CACACGGTCGCGCACCGGGTGCGGAACCCAG 19 189 0 CGCACCGGTG 0.913981 -75 GGTCCCTAGACGCACCGCGGGGGCAATGGTA 20 11 1 CGCACCCGGG 0.986549 -72 ACATGCGGTAGGCACCAGGCGGAGGAACC 21 97 1 GGCACCGGCG 0.98618 -19 AGTTGGATATGCCACCTAATCAACACCTGGG 24 55 1 GCCACCAATC 0.365442 -246 GCTGTGGCTCAGCACCTGCCCAGGTGTTGAT 24 73 0 AGCACCGCCC 0.802341 -228 CCGGACTCGCGGCACCTACCGCTTGCCCGGT 24 189 1 GGCACCACCG 0.887778 -112 CCTGCCGGCCGACACCGGGCAAGCGGTAGGT 24 202 0 GACACCGGCA 0.571352 -99 GGACCCGAAAGACATCCAGCCTGACGGCGCG 24 231 1 GACATCAGCC 0.628355 -70 CTCTGTCACGCGCAGCAACGGACACTCGATC 24 262 0 CGCAGCACGG 0.674011 -39 CGCGATGGGTACCACCCGAGCCCCCGCCGTC 25 24 0 ACCACCGAGC 0.542668 -179 TCGGGTGGTACCCATCGCGCCGCGCTGCGGT 25 36 1 CCCATCCGCC 0.925113 -167 GACGATGACCCGCACCGCAGCGCGGCGCGAT 25 49 0 CGCACCCAGC 0.941037 -154 TTGACTGCTCGGCTCCTCCTCACGCCGCTGC 25 89 1 GGCTCCCCTC 0.635084 -114 CTCCTCACGCCGCTGCGCGGCGTGCATCGTC 25 104 1 CGCTGCCGGC 0.869774 -99 AGCAGTCCAACACAGCTCGGCGACGATGCAC 25 125 0 CACAGCCGGC 0.927491 -78 TGGACTGCTCGGCTCCTCCTCACGCCGCTGC 25 147 1 GGCTCCCCTC 0.635084 -56 CTCCTCACGCCGCTGCGCGGCGTGCATCGTC 25 162 1 CGCTGCCGGC 0.869774 -41 CGGACTGTTCGACACCGCGGGCAACCTGGCC 26 83 1 GACACCCGGG 0.972935 -154 GCGGGCGGCGGCCACCTCGGACCCTGTATCG 26 203 1 GCCACCCGGA 0.742485 -34 ACATGATCACGCCACCTCTCCCCCGCAAGCG 27 27 1 GCCACCCTCC 0.637616 -102 GGGCGGTACCCCCACCTCATCGCTGCGGCCC 27 57 1 CCCACCCATC 0.711069 -72 GCCCCCTCGTCGCTTCGCGGCTGGGGGTGCC 27 84 1 CGCTTCCGGC 0.753124 -45 GCGCTTGCCGCGCAGCCGGCGATGGCTACTC 28 52 1 CGCAGCGGCG 0.9585 -231 CATCACCCGGGGCACCCCACCGCGGTTGGAG 28 91 1 GGCACCCACC 0.960456 -192 TGGCCGGCAACCCTCCAACCGCGGTGGGGTG 28 103 0 CCCTCCACCG 0.477107 -180 AGGGTTGCCGGCCAGCAAGCCGGGGCTTGAC 28 120 1 GCCAGCAGCC 0.863488 -163 TCAGATTACTAGCAGCCCGCGCGGGCCCCTA 28 251 0 AGCAGCCGCG 0.860934 -32 ****** **** Masking position 6 Map Score: 98.2248 Number of sites scoring better than the average of aligned sites = 28438 Number in coding regions = 26425 Number in noncoding regions = 2013 Number of orfs with sites within 600 bp upstream = 1083 Fraction of orfs with sites within 600 bp upstream = 0.173948 Motif number 3 ATCCGGCCGGGCCGATGGGTCCGCCGGATCA 3 27 1 GCCGATGGTC 0.772638 -118 ACATGATTTTGACGAGGAGCCGAATACG 4 50 1 GACGAGGGCC 0.924226 -18 ACGCCGGCCGGTCCTTCTCACCT 8 3 1 GCCGGCCGTC 0.575719 -298 GTGCCGCGAGGTGGGTGTGTCGGTGTGACAG 8 133 0 GTGGGTGGTC 0.728684 -168 CGCGCCTAGCGCCGGTGAGCCGTGCCGGCCT 8 239 0 GCCGGTGGCC 0.98374 -62 TCACGGTGCCGGCGATGAGCGTGCCGCGAGA 9 15 0 GGCGATGGCG 0.832497 -72 GTTCTATAGTCGACGCATCTCGCGTTCTA 10 9 1 GTCGACGATC 0.233298 -292 GCGGTGGGCTGTCGGTCGTGGGCCGCGGTAG 10 88 1 GTCGGTCTGG 0.43719 -213 GGGCGCTCGCGGCGGCCCGCGGGATGCTACC 10 114 0 GGCGGCCGCG 0.66158 -187 GCGCTGCACGGTGGGCGCTCGCGGCGGCCCG 10 126 0 GTGGGCGTCG 0.819913 -175 GGCCTGTTTCGAGGATGGGCCAGGTGTCTTC 10 199 1 GAGGATGGCC 0.885513 -102 CGTAAGGTAAGCCGCTGCGCGCTCGGCCGGG 11 31 0 GCCGCTGGCG 0.906371 -142 GGCACCATGGGCGGCCGCGCGTAAGGTAAGC 11 50 0 GCGGCCGGCG 0.838517 -123 CCCCGGGCAGGCGGGTCATCCCGATAGCGAC 11 91 1 GCGGGTCTCC 0.763108 -82 TAAGCACTTAGTGGGGCAGCCATATCAGCCA 11 134 1 GTGGGGCGCC 0.897135 -39 GCCACACCGGGTGGATGCGGCCGCGGAGTTA 12 185 1 GTGGATGGGC 0.803272 -116 GCCGAGCGAAGACGGTGAGCCC 12 289 1 GACGGTGGCC 0.951917 -12 CACCGCGGCCGTCGACGAACCGGATCCCTCA 14 17 0 GTCGACGACC 0.740088 -84 GATCTGATCGGGCGGTGCTCCAGGTTACGCG 15 31 1 GGCGGTGTCC 0.687862 -140 AGTCGTAGCTGTGGGGGTTGGACCCCAGATG 15 88 1 GTGGGGGTGG 0.6959 -83 TCCGTCCGGTGCCGGTGCGCTAGTTTCAACC 15 119 1 GCCGGTGGCT 0.649779 -52 CCTGCTGGCAGTCGGTGAACGGTCTGCCCCA 16 62 0 GTCGGTGACG 0.886355 -131 TTGTTGCCGTGTGGGTGCGCGCCGAAGTGCG 17 55 0 GTGGGTGGCG 0.963089 -103 GACACGGCCCGTCGGCGGGCGAACCAAATCC 17 125 1 GTCGGCGGCG 0.961998 -33 GCCAGCACCGGAGGAGGCGGGACTATGGTCG 18 44 1 GAGGAGGGGG 0.744336 -257 CATCGAGCGCGACGACGAAGGCCTTGCCTAC 18 139 1 GACGACGAGG 0.34869 -162 GTCCCGGTGGGCGGAGGTGCG 19 1 0 GCGGAGGGCG 0.966424 -263 CATCGGTGCAGTCGGCCGTCCTTGCTACGGT 19 56 0 GTCGGCCTCC 0.635777 -208 CGATGTCCCCGCCGAGGTGTCGGCAACGGCC 19 82 1 GCCGAGGGTC 0.799354 -182 TCGATCGATCGTCGGTCGGCGCAGGTCCACC 19 230 0 GTCGGTCGCG 0.91217 -34 TAGGCACCAGGCGGAGGAACC 21 105 1 GCGGAGGACC 0.860369 -11 GTCGAGGCTGGCTTGCCGCCG 23 1 1 GTCGAGGTGG 0.617916 -96 TCGAGCACGTGAGGATCAGCGAAACT 23 81 1 GAGGATCGCG 0.703828 -16 TGATCCCCAAGTCGGTGAACCCAATGCGGAT 24 13 0 GTCGGTGACC 0.882526 -288 AGCTTAGACGGCGGGGGCTCGGGTGGTACCC 25 18 1 GCGGGGGTCG 0.929829 -185 GCGCTGCGGTGCGGGTCATCGTCAAGCTGTG 25 57 1 GCGGGTCTCG 0.769815 -146 GCAGCGGCGTGAGGAGGAGCCGAGCAGTCAA 25 89 0 GAGGAGGGCC 0.900691 -114 TCCTCCTCACGCCGCTGCGCGGCGTGCATCG 25 102 1 GCCGCTGGCG 0.906371 -101 ACAGCTCGGCGACGATGCACGCCGCGCAGCG 25 114 0 GACGATGACG 0.705908 -89 GCAGCGGCGTGAGGAGGAGCCGAGCAGTCCA 25 147 0 GAGGAGGGCC 0.900691 -56 TCCTCCTCACGCCGCTGCGCGGCGTGCATCG 25 160 1 GCCGCTGGCG 0.906371 -43 CTAGCTCGGCGACGATGCACGCCGCGCAGCG 25 172 0 GACGATGACG 0.705908 -31 GTGCATCGTCGCCGAGCTAGGTTATGGGCT 25 183 1 GCCGAGCAGG 0.440498 -20 CCATCGACGAGCGGGGTTGCCGA 26 3 0 GCGGGGTGCC 0.507024 -234 AACCCCGCTCGTCGATGGGCCGACTAAGAAA 26 16 1 GTCGATGGCC 0.946698 -221 GGGATCGTGTGTGGATCCGGGGTTAGGCTGG 26 49 0 GTGGATCGGG 0.55645 -188 CCGCCCGCTTGCGGGGGAGAGGTGGCGTGAT 27 32 0 GCGGGGGGAG 0.548595 -97 CAGCGATGAGGTGGGGGTACCGCCCGCTTGC 27 51 0 GTGGGGGACC 0.867544 -78 GCCGCGAAGCGACGAGGGGGCCGCAGCGATG 27 74 0 GACGAGGGGC 0.790394 -55 CGACGATGCAGTGGGGGCACCCCCAGCCGCG 27 99 0 GTGGGGGACC 0.867544 -30 CGCCGCCGCCGACGATGCAGTGGGGGCA 27 111 0 GCCGACGTGC 0.631775 -18 CGCGGCAAGCGCGGGTCCGCCATGACGGGCC 28 33 0 GCGGGTCGCC 0.930094 -250 TTGCCGCGCAGCCGGCGATGGCTACTCAACC 28 56 1 GCCGGCGTGG 0.772209 -227 CGGCCAGCAAGCCGGGGCTTGACGCTGGCGC 28 128 1 GCCGGGGTTG 0.65571 -155 ******* *** Masking position 4 Map Score: 84.6068 Number of sites scoring better than the average of aligned sites = 29261 Number in coding regions = 27119 Number in noncoding regions = 2142 Number of orfs with sites within 600 bp upstream = 1131 Fraction of orfs with sites within 600 bp upstream = 0.181658 Motif number 4 CAACGATTACCGGTCGGCACCCGGAACCGA 6 11 1 CGGTCGGCAC 0.634352 -27 TGAGAAGGACCGGCCGGCGT 8 1 0 CGGCCGGCGT 0.860307 -300 GGTCCCTTTTCGCACGGCGTGTCGAGAGCT 8 190 1 CGCACGGCGT 0.955127 -111 GCGATAGGCCGGCACGGCTCACCGGCGCTA 8 234 1 GGCACGGCTC 0.864194 -67 GGCTCACCGGCGCTAGGCGCGCGTAGCGTC 8 249 1 CGCTAGGCGC 0.973074 -52 GCACGGTGGGCGCTCGCGGCGGCCCGCGGG 10 122 0 CGCTCGCGGC 0.938997 -179 ACGGACGCCGCGAGTCATCAC 11 2 1 CGGACGCCGC 0.978344 -171 CCGCGCGTAAGGTAAGCCGCTGCGCGCTCG 11 37 0 GGTAAGCCGC 0.438091 -136 TCACCGTCTTCGCTCGGCTTACTGCTCGAC 12 277 0 CGCTCGGCTT 0.853496 -24 GGTCCGGGGCTTCCCGGCGCGATGGCCTGG 14 70 0 TTCCCGGCGC 0.778403 -31 GCTGGCAAAGCGTTAGCCTTTATGGGGCAG 16 40 1 CGTTAGCCTT 0.126118 -153 GCAAGCGCATTGCGCGGCGCCTGCTGGCAG 16 82 0 TGCGCGGCGC 0.899379 -111 CCACGGCCGCTGTTCGCCTCGATTCTTCTG 16 126 0 TGTTCGCCTC 0.655895 -67 GGATTTGGTTCGCCCGCCGACGGGCCGTGT 17 126 0 CGCCCGCCGA 0.837388 -32 ACCATGTGCCCGCAGGGCGCTTTTTGCTTC 18 94 0 CGCAGGGCGC 0.876404 -207 CTCGATGTGGTGATCGCCGTCAACCATGTG 18 116 0 TGATCGCCGT 0.427296 -185 CCGGATTTCGCGGCAGCCGCAGGAAAACTT 18 179 0 CGGCAGCCGC 0.89668 -122 TCACGCTTCGTGATCGCCGCTGTGCTCGTC 18 272 0 TGATCGCCGC 0.834781 -29 CCTGTCACTGCGCCCGGAGCGACACACATC 19 141 0 CGCCCGGAGC 0.793757 -123 GATCGATCGTCGGTCGGCGCAGGTCCACCT 19 229 0 CGGTCGGCGC 0.981959 -35 GTCGAGGCTGGCTTGCCGCCGGTACGCTA 23 10 1 GGCTTGCCGC 0.736947 -87 GCGACGGCGGCGTAAGCCGCGAATAGTGCT 24 109 1 CGTAAGCCGC 0.781218 -192 TTGGCCGTTGGGCACGCCGGACTCGCGGCA 24 173 1 GGCACGCCGG 0.616368 -128 TGTGCTTGACTGCTCGGCTCCTCCTCACGC 25 84 1 TGCTCGGCTC 0.934431 -119 TCGGCTCCTCCTCACGCCGCTGCGCGGCGT 25 97 1 CTCACGCCGC 0.913297 -106 TCGGCGACGATGCACGCCGCGCAGCGGCGT 25 110 0 TGCACGCCGC 0.983193 -93 TGTGTTGGACTGCTCGGCTCCTCCTCACGC 25 142 1 TGCTCGGCTC 0.934431 -61 TCGGCTCCTCCTCACGCCGCTGCGCGGCGT 25 155 1 CTCACGCCGC 0.913297 -48 TCGGCGACGATGCACGCCGCGCAGCGGCGT 25 168 0 TGCACGCCGC 0.983193 -35 TAAGCTCGATTGCCCGGCTCTAGCTGTTCG 26 118 1 TGCCCGGCTC 0.916104 -119 GGGTCCGAGGTGGCCGCCGCCCGCGCGAGA 26 197 0 TGGCCGCCGC 0.944214 -40 GGCGGACCCGCGCTTGCCGCGCAGCCGGCG 28 43 1 CGCTTGCCGC 0.927698 -240 AGCTGCCATGCGCTAGGCTTCGAGTCGGTC 28 163 0 CGCTAGGCTT 0.519002 -120 CTTTACCGGCCGCTAGGGGCCCGCGCGGGC 28 238 1 CGCTAGGGGC 0.717313 -45 ********** Masking position 6 Map Score: 46.8636 Number of sites scoring better than the average of aligned sites = 16780 Number in coding regions = 15500 Number in noncoding regions = 1280 Number of orfs with sites within 600 bp upstream = 772 Fraction of orfs with sites within 600 bp upstream = 0.123996 Motif number 5 TCGGCCCGGCCGGATCATGCCGTATCGCGAA 3 11 0 CGGATCTGCC 0.95094 -134 ATGGGTCCGCCGGATCATGCCATTGGGCCGA 3 41 1 CGGATCTGCC 0.95094 -104 TAGCTATCGACGGACGGAGTCGTTGGGTCTA 3 73 0 CGGACGAGTC 0.0965452 -72 GGCTCGGTTCCGGGTGCCGACCGGTAATCGT 6 13 0 CGGGTGCGAC 0.930159 -25 ATCCTTTCGTCGGACTCTGCCAGCGACGCTA 8 272 0 CGGACTTGCC 0.718314 -29 ACGACGCTACCGGCTGGTGCCAATCACGGTG 9 38 0 CGGCTGTGCC 0.988279 -49 GATGCTACCGCGGCCCACGACCGACAGCCCA 10 92 0 CGGCCCCGAC 0.940426 -209 CGCGCTCGGCCGGGTGATGACTCGCGGCGTC 11 14 0 CGGGTGTGAC 0.969826 -159 CCCGGGCAGGCGGGTCATCCCGATAGCGACT 11 92 1 CGGGTCTCCC 0.833937 -81 GAAATGTCCTCGGATCGTGACCATAACGTTA 12 39 1 CGGATCTGAC 0.87348 -262 CTGGCCACCGCGGCCGTCGACGAACCGGATC 14 22 0 CGGCCGCGAC 0.949267 -79 TGGTGTGCGACGGGTCGTGGCTGGCCACCGC 14 42 0 CGGGTCTGGC 0.887272 -59 GGTTGCGGTCCGGGGCTTCCCGGCGCGATGG 14 75 0 CGGGGCTCCC 0.853765 -26 CCACCGCGATCGGAGGTTGAC 15 1 0 CGGAGGTGAC 0.90483 -170 TGGATCTGATCGGGCGGTGCTCCAGGTTACG 15 29 1 CGGGCGTGCT 0.845245 -142 CCCAGATGTCCGTCCGGTGCCGGTGCGCTAG 15 111 1 CGTCCGTGCC 0.843987 -60 CGCGCGTTGCCCGGTCTCTCT 16 1 1 CGCGCGTGCC 0.899573 -192 GCGCATTGCGCGGCGCCTGCTGGCAGTCGGT 16 77 0 CGGCGCTGCT 0.768817 -116 AGGCGAACAGCGGCCGTGGCCAACATAAGTT 16 137 1 CGGCCGGGCC 0.896881 -56 CGCCCGCCGACGGGCCGTGTCGACGGCGTGG 17 115 0 CGGGCCTGTC 0.884426 -43 TCAAGTTTTCCTGCGGCTGCCGCGAAATCCG 18 177 1 CTGCGGTGCC 0.856909 -124 GTGGCCCCGGCGGCCGTTGCCGACACCTCGG 19 93 0 CGGCCGTGCC 0.992176 -171 GTTCCGCACCCGGTGCGCGACCGTGTGATAG 19 193 1 CGGTGCCGAC 0.5489 -71 GGTTCCTCCGCCTGGTGCCTACCGCATGT 21 97 0 CGCCTGTGCC 0.847639 -19 CTAGAGGCGCCGTCGCCTGACCGCGGCCGCG 23 37 1 CGTCGCTGAC 0.556629 -60 GCACTATTCGCGGCTTACGCCGCCGTCGCCG 24 107 0 CGGCTTCGCC 0.720519 -194 GGATGTCTTTCGGGTCCTGCCGGCCGACACC 24 217 0 CGGGTCTGCC 0.987031 -84 GTGTCCGTTGCTGCGCGTGACAGAGTTTTGT 24 268 1 CTGCGCTGAC 0.642721 -33 GGCGGGGGCTCGGGTGGTACCCATCGCGCCG 25 27 1 CGGGTGTACC 0.79384 -176 CCGCGCGAGACGGTTGTCGCCGTTGTATTCA 26 176 0 CGGTTGCGCC 0.777108 -61 CCGTCTCGCGCGGGCGGCGGCCACCTCGGAC 26 194 1 CGGGCGCGGC 0.85324 -43 CCCCCGCAAGCGGGCGGTACCCCCACCTCAT 27 46 1 CGGGCGTACC 0.852741 -83 CGCTTCGCGGCTGGGGGTGCCCCCACTGCAT 27 94 1 CTGGGGTGCC 0.865055 -35 CCGCCATGACGGGCCCCTGACCAGACGGGGA 28 17 0 GGGCCCTGAC 0.55607 -266 CATGGCGGACCCGCGCTTGCCGCGCAGCCGG 28 40 1 CCGCGCTGCC 0.747705 -243 TGGGGTGCCCCGGGTGATGACCAGGTTGAGT 28 79 0 CGGGTGTGAC 0.969826 -204 GCCAGCAAGCCGGGGCTTGACGCTGGCGCTC 28 130 1 CGGGGCTGAC 0.969235 -153 ****** **** Masking position 1 Map Score: 62.8048 Number of sites scoring better than the average of aligned sites = 9748 Number in coding regions = 9048 Number in noncoding regions = 700 Number of orfs with sites within 600 bp upstream = 522 Fraction of orfs with sites within 600 bp upstream = 0.083842 Motif number 6 CATGATCCGGCGGACCCATCGGCCCGGCCGGATCA 3 25 0 CGGATCGGCC 0.84757 -120 CGGAGTCGTTGGGTCTACTCGGCCCAATGGCATGA 3 55 0 GGGCTCGGCC 0.952555 -90 CGCGCTGGTCAGCTGCCATGACCGC 5 45 0 CGCGTCAGCG 0.484452 -15 ACCCACCTCGCGGCACACACAACACCGACACTGAG 8 148 1 CGGCACAACC 0.92511 -153 GGTGGGCGATAGGCCGGCACGGCTCACCGGCGCTA 8 229 1 AGGCACGGCC 0.705468 -72 CGATTCTCGCGGCACGCTCATCGCCGGCACCGTG 9 10 1 CGGCTCATCC 0.760306 -77 GGGATGCTACCGCGGCCCACGACCGACAGCCCACC 10 90 0 CGCCACGACG 0.921272 -211 AGGTAAGCCGCTGCGCGCTCGGCCGGGTGATGACT 11 23 0 CTGCTCGGCG 0.913977 -150 ACGGGCGATACGGTGCTGGGACAAAT 12 2 1 CGGTACGGTC 0.524751 -299 GCAACTTCAGCGCGGAATTCGGCTGTGATTGTGAG 12 109 1 CGCTTCGGCG 0.921053 -192 CGGAGTTAATCGGCGGTCTCGATACAGTTCTCCGT 12 208 1 CGGCTCGATC 0.784377 -93 CCGTGCGAGTCGCCGATTTCGGCACCGCCTACCTA 12 239 1 CGCTTCGGCC 0.965926 -62 GTCGACGAACCGGATCCCTCAGCTGTC 14 3 0 CGGCTCAGCG 0.946503 -98 CGGCCGCGGTGGCCAGCCACGACCCGTCGCACACC 14 37 1 GGCCACGACC 0.79251 -64 GTTGCGGTCCGGGGCTTCCCGGCGCGATGGCCTGG 14 70 0 GGGCCCGGCC 0.78392 -31 GGTGCCGGTGCGCTAGTTTCAACCCGAAGCCAAGT 15 126 1 CGCTTCAACC 0.790125 -45 GTCCTGCAAGCGCATTGCGCGGCGCCTGCTGGCAG 16 82 0 CGCCGCGGCC 0.940631 -111 TTACGCGCTGCTCGCACTTCGGCGCGCACCCACAC 17 43 1 CTCTTCGGCC 0.813123 -115 TGACACCACGCCGTCGACACGGCCCGTCGGCGGGC 17 110 1 CCGCACGGCC 0.676696 -48 GTAGAAATGCCGGATTTCGCGGCAGCCGCAGGAAA 18 183 0 CGGCGCGGCG 0.917415 -118 CATGCGGGTACGCACGATTCGACACGACGGCAAGG 18 229 1 CGCTTCGACC 0.936559 -72 CGCCGCTGTGCTCGTCCTTCAACACCTTGCCGTCG 18 253 0 CTCTTCAACC 0.366227 -48 ACGAGCACAGCGGCGATCACGAAGCGTGAACCAGC 18 273 1 CGGCACGAAC 0.667467 -28 GCGGGGACATCGGTGCAGTCGGCCGTCCTTGCTAC 19 59 0 CGGGTCGGCG 0.855846 -205 GCGGCCGTTGCCGACACCTCGGCGGGGACATCGGT 19 80 0 CCGCTCGGCG 0.838869 -184 GACGGTCTCCGTACACGACTCATGCTGGACA 21 7 1 CTCCACGACC 0.813581 -109 CAGCACTATTCGCGGCTTACGCCGCCGTCGCCGAA 24 105 0 CGCTACGCCC 0.492377 -196 AATAGTGCTGGTCGGCATTCAACACTTTGGTCACC 24 130 1 GTCTTCAACC 0.0720356 -171 GCCGCGAGTCCGGCGTGCCCAACGGCCAACTCTAC 24 167 0 CGGCCCAACG 0.596157 -134 TGCCCGGTGTCGGCCGGCAGGACCCGAAAGACATC 24 212 1 CGGCAGGACC 0.54745 -89 CAAGCTGTGCTTGACTGCTCGGCTCCTCCTCACGC 25 79 1 TTGCTCGGCC 0.540222 -124 CGAGCTGTGTTGGACTGCTCGGCTCCTCCTCACGC 25 137 1 TGGCTCGGCC 0.884461 -66 CGATCCCGATCGGACTGTTCGACACCGCGGGCAAC 26 73 1 CGGTTCGACC 0.961791 -164 GGTTTGCCAGCGGTGAATACAACGGCGACAACCGT 26 163 1 CGGTACAACG 0.593062 -74 GCGCGGGCGGCGGCCACCTCGGACCCTGTATCGGG 26 201 1 CGGCTCGGAC 0.874735 -36 CTCATCGCTGCGGCCCCCTCGTCGCTTCGCGGCTG 27 72 1 CGGCTCGTCC 0.925306 -57 TCAGTGCCAACTCAAAGCACAACTCCGGCGGTCTC 28 195 1 CTCCACAACC 0.52666 -88 AGCACAACTCCGGCGGTCTCAACTGGCCCTTTACC 28 210 1 CGGCTCAACG 0.901983 -73 *** ****** * Masking position 10 Map Score: 52.5321 Number of sites scoring better than the average of aligned sites = 21489 Number in coding regions = 20270 Number in noncoding regions = 1219 Number of orfs with sites within 600 bp upstream = 767 Fraction of orfs with sites within 600 bp upstream = 0.123193 Motif number 7 GAGATAACACGCGAAGAGGATCACATTAG 2 61 1 GAGGGATCAC 0.983916 -19 TGGGCTGGCGGTGTTACAGATCACAGTACGCTCC 3 110 0 GTAAGATCAC 0.728662 -35 TCAAAATCATGTAATACAGCTCACACTACCGCCG 4 28 0 GAAAGCTCAC 0.644162 -40 CCATGACCGCGGAAGGGGGATCACGGTCTACGAC 5 21 0 GAGGGATCAC 0.983903 -39 CGGATCACCTGGTGTCTGGCTCACTTTGCGTCTG 8 75 0 GGCGGCTCAC 0.845421 -226 TCGCGGTGGTTTGTTCCGGATCACCTGGTGTCTG 8 91 0 TTCGGATCAC 0.803792 -210 AAGCGCTACCGATTCCTGGAGCACTCCTGCCTAG 10 37 0 GTCGGAGCAC 0.950664 -264 GAAGGTAGTCGCTATCGGGATGACCCGCCTGCCC 11 95 0 GACGGATGAC 0.884925 -78 GGCTGTGATTGTGAGTTGGATCACGTTTCGGCTG 12 129 1 GATGGATCAC 0.859911 -172 ACCGGGACGCGTAACCTGGAGCACCGCCCGATCA 15 35 0 GACGGAGCAC 0.976303 -136 GTGCTGGCACGTGACCTAGATCACATTCAGACTA 18 18 0 GACAGATCAC 0.716521 -283 GGGCACATGGTTGACGGCGATCACCACATCGAGC 18 113 1 TAGCGATCAC 0.628819 -188 GCGACAAGCCGACAAATCGAGCACGTGAGGATCA 23 65 1 GAACGAGCAC 0.764752 -32 TGGGTTCACCGACTTGGGGATCACGATATTACCG 24 21 1 GTGGGATCAC 0.965906 -280 * * * ******* Masking position 13 Map Score: 8.8384 Number of sites scoring better than the average of aligned sites = 908 Number in coding regions = 852 Number in noncoding regions = 56 Number of orfs with sites within 600 bp upstream = 68 Fraction of orfs with sites within 600 bp upstream = 0.0109219 Motif number 8 ACTTGACCTACTGGGTCAGGCCGACGAGCAC 7 22 1 CGGGTCAGGC 0.944121 -42 CACCGCGACACGGCGTCTGTCACACCGACAC 8 117 1 CGCGTCTGTC 0.568253 -184 TGCGTCTGGTGGGCGATAGGCCGGCACGGCT 8 222 1 GGCGATAGGC 0.953088 -79 CACGGCTCACCGGCGCTAGGCGCGCGTAGCG 8 246 1 CGCGCTAGGC 0.884468 -55 ATCACGGTGCCGGCGATGAGCGTGCCGCGAG 9 16 0 CGCGATGAGC 0.741267 -71 ATCGCCGGCACCGTGATTGGCACCAGCCGGT 9 30 1 CGTGATTGGC 0.689333 -57 ATGAACATCGCTGCGAGAGGCCTGTTTCGAG 10 181 1 CGCGAGAGGC 0.929494 -120 CGACTACCTTCAGCTATAAGCACTTAGTGGG 11 118 1 CGCTATAAGC 0.69419 -55 GTGCCGAAATCGGCGACTCGCACGGAGAACT 12 233 0 CGCGACTCGC 0.965635 -68 AACGCTTTGCCAGCGATTCGCCAGAGAGACC 16 23 0 CGCGATTCGC 0.90981 -170 TCCTGCCGACGTGCTACTGGCACGTTACGCG 17 19 1 GGCTACTGGC 0.730877 -139 CGCGCTGGTTCACGCTTCGTGATCG 18 286 0 CGGTTCACGC 0.388639 -15 CCTCCGCCCACCGGGACTTGCTGTTGCAACC 19 15 1 CGGGACTTGC 0.567606 -249 GCTACGGTTTGGGCGACTGGTTGCAACAGCA 19 33 0 GGCGACTGGT 0.494426 -231 ACTGCGCCCGGAGCGACACACATCCAGGGCG 19 134 0 GGCGACACAC 0.455625 -130 GTGCGCGACCGTGTGATAGGCCAGAGGTGGA 19 205 1 GGTGATAGGC 0.625939 -59 TCTAGCGTACCGGCGGCAAGCCAGCCTCGAC 23 11 0 CGCGGCAAGC 0.940177 -86 CTGACCGCGGCCGCGACAAGCCGACAAATCG 23 53 1 CGCGACAAGC 0.984354 -44 ACTCGATCCGCGCCGTCAGGCTGGATGTCTT 24 239 0 CCCGTCAGGC 0.788004 -62 TGTGTGGATCCGGGGTTAGGCTGGCTTTTCT 26 42 0 CGGGTTAGGC 0.858446 -195 GTGAATACAACGGCGACAACCGTCTCGCGCG 26 175 1 CGCGACAACC 0.787674 -62 ATCGCCGGCTGCGCGGCAAGCGCGGGTCCGC 28 44 0 GGCGGCAAGC 0.849615 -239 TCATGAGCGCCAGCGTCAAGCCCCGGCTTGC 28 134 0 CGCGTCAAGC 0.965221 -149 * ********* Masking position 11 Map Score: 14.6809 Number of sites scoring better than the average of aligned sites = 8979 Number in coding regions = 8292 Number in noncoding regions = 687 Number of orfs with sites within 600 bp upstream = 527 Fraction of orfs with sites within 600 bp upstream = 0.084645 Motif number 9 ACAACCGAGCCCCCCAGAAAA 2 2 1 CAACCGAGCC 0.952538 -78 TCGGCACCCGGAACCGAGCCGTTT 6 24 1 GAACCGAGCC 0.958749 -14 GACACCAGGTGATCCGGAACAAACCACCGC 8 93 1 GATCCGGAAC 0.503022 -208 GACACACAAGGAACCCGATCA 13 20 1 GAACCCGATC 0.75884 -11 GGCCGTCGACGAACCGGATCCCTCAGCTGT 14 12 0 GAACCGGATC 0.717839 -89 CCCCGGACCGCAACCTGGCC 14 91 1 CAACCTGGCC 0.952538 -10 ACGGACACTCGATCCGCGCCGTCAGGCTGG 24 246 0 GATCCGCGCC 0.934866 -55 CGATGGGTACCACCCGAGCCCCCGCCGTCT 25 23 0 CACCCGAGCC 0.907426 -180 GCTTGACGATGACCCGCACCGCAGCGCGGC 25 54 0 GACCCGCACC 0.824856 -149 ATCCACACACGATCCCGATCGGACTGTTCG 26 64 1 GATCCCGATC 0.602044 -173 ACACCGCGGGCAACCTGGCCAAGTTAAGCT 26 94 1 CAACCTGGCC 0.952538 -143 TCATGTGCTCCTTCCGGGCCTT 27 3 0 CTTCCGGGCC 0.835087 -126 GATGGCTACTCAACCTGGTCATCACCCGGG 28 72 1 CAACCTGGTC 0.866132 -211 ********** Masking position 5 Map Score: 7.73869 Number of sites scoring better than the average of aligned sites = 4534 Number in coding regions = 4239 Number in noncoding regions = 295 Number of orfs with sites within 600 bp upstream = 256 Fraction of orfs with sites within 600 bp upstream = 0.0411179 Motif number 10 TCTCTGTGTACCCTTCGACGAGATAACACG 2 42 1 CCCTTCGACG 0.944337 -38 ATCCGGCGGACCCATCGGCCCGGCCGGATC 3 26 0 CCCATCGGCC 0.953232 -119 GCCGAGTAGACCCAACGACTCCGTCCGTCG 3 67 1 CCCAACGACT 0.3585 -78 CCCGATACTAGCTATCGACGGACGGAGTCG 3 82 0 GCTATCGACG 0.383029 -63 GGGGATCACGGTCTACGACCTTACTGCGG 5 10 0 GTCTACGACC 0.593732 -50 ACCGTGATCCCCCTTCCGCGGTCATGGCAG 5 28 1 CCCTTCCGCG 0.589314 -32 TGGTCGAGTGCTCGTCGGCCTGACCCAGTA 7 30 0 CTCGTCGGCC 0.810602 -34 GCCGGCACGGCTCACCGGCGCTAGGCGCGC 8 241 1 CTCACCGGCG 0.752192 -60 GTCGGACTCTGCCAGCGACGCTACGCGCGC 8 265 0 GCCAGCGACG 0.91246 -36 TCGCGGCACGCTCATCGCCGGCACCGTGAT 9 17 1 CTCATCGCCG 0.637586 -70 ACCTGGCCCCGGCAACGACGCTACCGGCTG 9 53 0 GGCAACGACG 0.874705 -34 TGCTACCGCGGCCCACGACCGACAGCCCAC 10 91 0 GCCCACGACC 0.646673 -210 CAAAGAGATTGTCTTCGGCGCTGCACGGTG 10 144 0 GTCTTCGGCG 0.914803 -157 GGCCACCGCGGCCGTCGACGAACCGGATCC 14 21 0 GCCGTCGACG 0.946561 -80 AACTTATGTTGGCCACGGCCGCTGTTCGCC 16 138 0 GGCCACGGCC 0.631192 -55 CTCTTCGACCAGCCATTCGT 16 183 0 CTCTTCGACC 0.670633 -10 GCGCTGCTCGCACTTCGGCGCGCACCCACA 17 47 1 CACTTCGGCG 0.643543 -111 GACGGGCCGTGTCGACGGCGTGGTGTCAGC 17 108 0 GTCGACGGCG 0.876285 -50 GTCGACACGGCCCGTCGGCGGGCGAACCAA 17 122 1 CCCGTCGGCG 0.97272 -36 CGTAGGCAAGGCCTTCGTCGTCGCGCTCGA 18 141 0 GCCTTCGTCG 0.658032 -160 CGAAGGCCTTGCCTACGACGACCTCAAGTT 18 154 1 GCCTACGACG 0.924109 -147 CCGAGGTGTCGGCAACGGCCGCCGGGGCCA 19 93 1 GGCAACGGCC 0.866575 -171 GCCGCGGTCAGGCGACGGCGCCTCTAGCGT 23 34 0 GGCGACGGCG 0.918901 -63 CTGAGCCACAGCCTTCGGCGACGGCGGCGT 24 92 1 GCCTTCGGCG 0.974875 -209 GTCCGGCGTGCCCAACGGCCAACTCTACGT 24 165 0 CCCAACGGCC 0.932092 -136 ATGCACGCCGCGCAGCGGCGTGAGGAGGAG 25 101 0 CGCAGCGGCG 0.889335 -102 ATGCACGCCGCGCAGCGGCGTGAGGAGGAG 25 159 0 CGCAGCGGCG 0.889335 -44 TCTTAGTCGGCCCATCGACGAGCGGGGTTG 26 15 0 CCCATCGACG 0.956335 -222 CCCACCTCATCGCTGCGGCCCCCTCGTCGC 27 67 1 CGCTGCGGCC 0.745679 -62 CGCCGCCGCCGACGATGCAGTGGG 27 115 0 GCCGCCGACG 0.805218 -14 AGGTTGAGTAGCCATCGCCGGCTGCGCGGC 28 58 0 GCCATCGCCG 0.871396 -225 ********** Masking position 6 Map Score: 50.4946 Number of sites scoring better than the average of aligned sites = 22340 Number in coding regions = 21224 Number in noncoding regions = 1116 Number of orfs with sites within 600 bp upstream = 690 Fraction of orfs with sites within 600 bp upstream = 0.110826 Motif number 11 TAATGTGATCCTCTTCGCGTGTTATCTCGT 2 59 0 CTCTTCGCGT 0.599279 -21 CGGATCATGCCGTATCGCGAA 3 2 0 CGTATCGCGA 0.42245 -143 CTGCCAGCGACGCTACGCGCGCCTAGCGCC 8 257 0 CGCTACGCGC 0.979995 -44 CCGGCAACGACGCTACCGGCTGGTGCCAAT 9 45 0 CGCTACCGGC 0.674166 -42 GAATCGGTAGCGCTTCGGGTAGCGCTGACG 10 56 1 CGCTTCGGGT 0.961139 -245 CGAAGACAATCTCTTTGGGCGGTAATGAAC 10 157 1 CTCTTTGGGC 0.584463 -144 TGTGCTTATTGGCTTCGCGGCGCCGCGAAG 10 242 1 GGCTTCGCGG 0.791637 -59 TAAGGTAAGCCGCTGCGCGCTCGGCCGGGT 11 30 0 CGCTGCGCGC 0.954678 -143 AACCCCTTCGCGCTTTGGCTGATATGGCTG 11 150 0 CGCTTTGGCT 0.711499 -23 GTCCCAGCACCGTATCGCCCGT 12 3 0 CGTATCGCCC 0.748659 -298 AGTTGGATCACGTTTCGGCTGGACAAACAT 12 142 1 CGTTTCGGCT 0.711499 -159 CGGTGCTCCAGGTTACGCGTCCCGGTATGG 15 43 1 GGTTACGCGT 0.525811 -128 TTACGGACTTGGCTTCGGGTTGAAACTAGC 15 137 0 GGCTTCGGGT 0.878419 -34 AGAGAGACCGGGCAACGCGCG 16 2 0 GGCAACGCGC 0.816381 -191 TAAAGGCTAACGCTTTGCCAGCGATTCGCC 16 32 0 CGCTTTGCCA 0.456053 -161 GTCCTGCAAGCGCATTGCGCGGCGCCTGCT 16 87 0 CGCATTGCGC 0.893211 -106 ACCAGCCATTCGTTTTGCCCGAATGGTGAA 16 166 0 CGTTTTGCCC 0.728592 -27 GCTACTGGCACGTTACGCGCTGCTCGCACT 17 31 1 CGTTACGCGC 0.932051 -127 GTCCTTGCTACGGTTTGGGCGACTGGTTGC 19 40 0 CGGTTTGGGC 0.620802 -224 CCGAGGTGTCGGCAACGGCCGCCGGGGCCA 19 93 1 GGCAACGGCC 0.595191 -171 GGATGTGTGTCGCTCCGGGCGCAGTGACAG 19 140 1 CGCTCCGGGC 0.914084 -124 CAATCCGCATTGGGTTCACCGACTT 24 6 1 CGCATTGGGT 0.682697 -295 CGCCGAGCTAGGTTATGGGCT 25 192 1 GGTTATGGGC 0.510498 -11 CGGCGACAACCGTCTCGCGCGGGCGGCGGC 26 185 1 CGTCTCGCGC 0.720177 -52 CCCACCTCATCGCTGCGGCCCCCTCGTCGC 27 67 1 CGCTGCGGCC 0.874405 -62 GCCCCCTCGTCGCTTCGCGGCTGGGGGTGC 27 84 1 CGCTTCGCGG 0.928602 -45 CTTTACCGGCCGCTAGGGGCCCGCGCGGGC 28 238 1 CGCTAGGGGC 0.748682 -45 ********** Masking position 7 Map Score: 24.3144 Number of sites scoring better than the average of aligned sites = 10602 Number in coding regions = 9702 Number in noncoding regions = 900 Number of orfs with sites within 600 bp upstream = 620 Fraction of orfs with sites within 600 bp upstream = 0.0995824 Motif number 12 CAGTAGGTCAAGTCCGACAACCGA 7 2 0 AGTCGCACCG 0.971896 -62 ACGCAAAGTGAGCCAGACACCAGGTGATCCGGA 8 78 1 AGCCGCACAG 0.850809 -223 GCGAGTCATCACCCGGCCGAGCGCGCAGCGGCT 11 20 1 ACCCGCGGCG 0.954662 -153 AGAGACCCCACCCCGGGCAGGCGGGTCATCCCG 11 81 1 CCCCGCAGCG 0.807799 -92 TTGGTCGAGCAGTAAGCCGAGCGAAGACGGTGA 12 274 1 AGTAGCGGCG 0.904167 -27 CCCGAAGCCAAGTCCGTAAGGAGCAGAACCGAC 15 148 1 AGTCGAAGAG 0.639751 -23 TGCTAGTTGAAGTCCTGCAAGCGCATTGCGCGG 16 95 0 AGTCTCAGCG 0.907366 -98 ACGGCAACAAAGCAGGACAAGCGTACTGCTAGG 17 76 1 AGCAGCAGCG 0.943591 -82 TGTTAACGCGAGTCAGACATGCGGTAGGCACCA 21 81 1 AGTCGCAGCG 0.993804 -35 AGGTGCCGCGAGTCCGGCGTGCCCAACGGCCAA 24 173 0 AGTCGCGGCC 0.879891 -128 TCCCTACAAAACTCTGTCACGCGCAGCAACGGA 24 271 0 ACTCGCAGCG 0.978665 -30 GGCTTTTCTTAGTCGGCCCATCGACGAGCGGGG 26 18 0 AGTCGCCTCG 0.808078 -219 GAACAGCTAGAGCCGGGCAATCGAGCTTAACTT 26 114 0 AGCCGCATCG 0.953099 -123 CTAGGCTTCGAGTCGGTCATGAGCGCCAGCGTC 28 148 0 AGTCGCAGAG 0.966857 -135 **** * ** *** Masking position 1 Map Score: 15.4121 Number of sites scoring better than the average of aligned sites = 1646 Number in coding regions = 1487 Number in noncoding regions = 159 Number of orfs with sites within 600 bp upstream = 161 Fraction of orfs with sites within 600 bp upstream = 0.0258593 Motif number 13 CAAAAGCTCTCGACACGCCGTGCGAAAAGG 8 194 0 CGACACGCCG 0.665197 -107 TAGGCCGGCACGGCTCACCGGCGCTAGGCG 8 238 1 CGGCTCACCG 0.425323 -63 AGGCGCGCGTAGCGTCGCTGGCAGAGTCCG 8 263 1 AGCGTCGCTG 0.322211 -38 TCGCGGCACGCTCATCGCCGGCACCGTGAT 9 17 1 CTCATCGCCG 0.819436 -70 TTATTGGCTTCGCGGCGCCGCGAAGGTGTT 10 247 1 CGCGGCGCCG 0.955801 -54 AGCCGCTGCGCGCTCGGCCGGGTGATGACT 11 23 0 CGCTCGGCCG 0.881911 -150 GCTTACCTTACGCGCGGCCGCCCATGGTGC 11 50 1 CGCGCGGCCG 0.97391 -123 CGGGATGACCCGCCTGCCCGGGGTGGGGTC 11 84 0 CGCCTGCCCG 0.950738 -89 GTTCTCCGTGCGAGTCGCCGATTTCGGCAC 12 234 1 CGAGTCGCCG 0.948863 -67 GTCTCTCTGGCGAATCGCTGGCAAAGCGTT 16 24 1 CGAATCGCTG 0.722285 -169 GACCGTTCACCGACTGCCAGCAGGCGCCGC 16 69 1 CGACTGCCAG 0.452224 -124 TCGGGCAAAACGAATGGCTGGTCGAAGAG 16 174 1 CGAATGGCTG 0.794955 -19 GTTCGCCCGCCGACGGGCCGTGTCGACGGC 17 119 0 CGACGGGCCG 0.859735 -39 CGCACCTCCGCCCACCGGGA 19 1 1 CGCACCTCCG 0.834442 -263 TGGTGCCTACCGCATGTCTGACTCGCGTTA 21 84 0 CGCATGTCTG 0.785881 -32 GAGGCGCCGTCGCCTGACCGCGGCCGCGAC 23 40 1 CGCCTGACCG 0.941393 -57 CGGTAGGTGCCGCGAGTCCGGCGTGCCCAA 24 180 0 CGCGAGTCCG 0.78772 -121 CGGCACCTACCGCTTGCCCGGTGTCGGCCG 24 198 1 CGCTTGCCCG 0.816145 -103 CGGCGCGGATCGAGTGTCCGTTGCTGCGCG 24 255 1 CGAGTGTCCG 0.872248 -46 TCCGTTGCTGCGCGTGACAGAGTTTTGTAG 24 271 1 CGCGTGACAG 0.776318 -30 GACGATGACCCGCACCGCAGCGCGGCGCGA 25 50 0 CGCACCGCAG 0.772231 -153 GTACCCCCACCTCATCGCTGCGGCCCCCTC 27 62 1 CTCATCGCTG 0.47707 -67 GCGCGGCAAGCGCGGGTCCGCCATGACGGG 28 35 0 CGCGGGTCCG 0.89086 -248 GACGCTGGCGCTCATGACCGACTCGAAGCC 28 148 1 CTCATGACCG 0.575353 -135 CGAAGCCTAGCGCATGGCAGCTACTCAGTG 28 171 1 CGCATGGCAG 0.923506 -112 ********** Masking position 8 Map Score: 27.8483 Number of sites scoring better than the average of aligned sites = 11707 Number in coding regions = 10778 Number in noncoding regions = 929 Number of orfs with sites within 600 bp upstream = 657 Fraction of orfs with sites within 600 bp upstream = 0.105525 Motif number 14 GCGTCGTTGCCGGGGCCAGGTGTGAGAATT 9 62 1 CGGGGCCAGG 0.786531 -25 GGTAGCGCTTCGGGTAGCGCTGACGCTGCG 10 61 1 CGGGTAGCGC 0.400961 -240 CACTACAGTTCGGGGAAGACACCTGGCCCA 10 214 0 CGGGGAAGAC 0.876703 -87 GCAACTTCAGCGCGGAATTCGGCTGTGATT 12 109 1 CGCGGAATTC 0.263099 -192 GGCCATCGCGCCGGGAAGCCCCGGACCGCA 14 73 1 CCGGGAAGCC 0.587528 -28 CCAGAGAGACCGGGCAACGCGCG 16 4 0 CGGGCAACGC 0.814817 -189 TGGCGAATCGCTGGCAAAGCGTTAGCCTTT 16 31 1 CTGGCAAAGC 0.433604 -162 GTTCACCATTCGGGCAAAACGAATGGCTGG 16 165 1 CGGGCAAAAC 0.73174 -28 CTTTTTGCTTCGGGAAGTGCGTAGTGGTCG 18 75 0 CGGGAAGTGC 0.302049 -226 GACACCTCGGCGGGGACATCGGTGCAGTCG 19 73 0 CGGGGACATC 0.931018 -191 CAACGGCCGCCGGGGCCACCAACTCGCCGC 19 105 1 CGGGGCCACC 0.852968 -159 CCACAGCCTTCGGCGACGGCGGCGTAAGCC 24 97 1 CGGCGACGGC 0.848698 -204 CCGGCCGACACCGGGCAAGCGGTAGGTGCC 24 199 0 CCGGGCAAGC 0.889066 -102 GGGGGAAAGCTTAGACGGCG 25 1 1 GGGGGAAAGC 0.9047 -202 ACAGCTAGAGCCGGGCAATCGAGCTTAACT 26 115 0 CCGGGCAATC 0.634606 -122 GTGAATACAACGGCGACAACCGTCTCGCGC 26 175 1 CGGCGACAAC 0.645104 -62 GACCCTGTATCGGGGAGATCCCGGT 26 222 1 CGGGGAGATC 0.915938 -15 GCCCGCTTGCGGGGGAGAGGTGGCGTGATC 27 31 0 GGGGGAGAGG 0.395705 -98 CCTGACCAGACGGGGAAAGCTC 28 3 0 CGGGGAAAGC 0.988121 -280 TCGCCGGCTGCGCGGCAAGCGCGGGTCCGC 28 44 0 CGCGGCAAGC 0.831328 -239 GCCGCGCAGCCGGCGATGGCTACTCAACCT 28 58 1 CGGCGATGGC 0.46463 -225 ********** Masking position 3 Map Score: 7.02283 Number of sites scoring better than the average of aligned sites = 7061 Number in coding regions = 6531 Number in noncoding regions = 530 Number of orfs with sites within 600 bp upstream = 464 Fraction of orfs with sites within 600 bp upstream = 0.0745262 Motif number 15 GGTCATGGCAGCTGACCAGCGCG 5 47 1 GCGCCAGCGC 0.986502 -13 ACTGGGTCAGGCCGACGAGCACTCGACCATTA 7 31 1 GCGCGAGCAC 0.955959 -33 ACGCCGGCCGGTCCTTCTCACCTA 8 3 1 GCGCCGGTCC 0.633483 -298 GCTACCGGCTGGTGCCAATCACGGTGCCGGCG 9 32 0 GGGCAATCAC 0.660146 -55 GGATGCTACCGCGGCCCACGACCGACAGCCCA 10 92 0 GCGCCACGAC 0.561113 -209 CCCCGGGCAGGCGGGTCATCCCGATAGCGACT 11 91 1 GCGTCATCCC 0.473262 -82 CGACGGCCGCGGTGGCCAGCCACGACCCGTCG 14 34 1 GGGCCAGCCA 0.925708 -67 AGGCCATCGCGCCGGGAAGCCCCGGACCGCAA 14 72 1 GCGGAAGCCC 0.808244 -29 ACGGACATCTGGGGTCCAACCCCCACAGCTAC 15 92 0 GGGCCAACCC 0.953759 -79 CGGCCCGTCGGCGGGCGAACCAAATCCCTGGG 17 129 1 GCGCGAACCA 0.556078 -29 CTAGCGTACCGGCGGCAAGCCAGCCTCGAC 23 9 0 GGGCAAGCCA 0.808887 -88 AGTGTTGAATGCCGACCAGCACTATTCGCGGC 24 124 0 GCGCCAGCAC 0.992409 -177 TTCGGGTCCTGCCGGCCGACACCGGGCAAGCG 24 208 0 GCGCCGACAC 0.869429 -93 ACAGCTTGACGATGACCCGCACCGCAGCGCGG 25 55 0 GAGCCCGCAC 0.587872 -148 GAGGAGCCGAGCAGTCAAGCACAGCTTGACGA 25 75 0 GCGCAAGCAC 0.977977 -128 GAGGAGCCGAGCAGTCCAACACAGCTCGGCGA 25 133 0 GCGCCAACAC 0.969931 -70 TGTATTCACCGCTGGCAAACCCCTTAAAAGCA 26 152 0 GCGCAAACCC 0.946372 -85 TCGCGCGGGCGGCGGCCACCTCGGACCCTGTA 26 199 1 GGGCCACCTC 0.554373 -38 GCCCGTCATGGCGGACCCGCGCTTGCCGCGCA 28 34 1 GCGCCCGCGC 0.937765 -249 TTGGAGGGTTGCCGGCCAGCAAGCCGGGGCTT 28 116 1 GCGCCAGCAA 0.949964 -167 CATGAGCGCCAGCGTCAAGCCCCGGCTTGCTG 28 132 0 AGGCAAGCCC 0.524787 -151 GCACTGAGTAGCTGCCATGCGCTAGGCTTCGA 28 170 0 GCGCATGCGC 0.652631 -113 ** * ******* Masking position 4 Map Score: 22.9647 Number of sites scoring better than the average of aligned sites = 8407 Number in coding regions = 7934 Number in noncoding regions = 473 Number of orfs with sites within 600 bp upstream = 391 Fraction of orfs with sites within 600 bp upstream = 0.0628012