AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00020_mtub_reg_300.orf -o00020_mtub_300.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 Rv0248c 30 hypothetical protein Rv0248c #2 Rv0249c 79 hypothetical protein Rv0249c #3 Rv0250c 144 hypothetical protein Rv0250c #4 hsp 213 hsp #5 Rv0458 67 hypothetical protein Rv0458 #6 Rv0460 59 hypothetical protein Rv0460 #7 Rv0461 37 hypothetical protein Rv0461 #8 Rv0462 63 hypothetical protein Rv0462 #9 lpdB 300 lpdB #10 citA 86 citA #11 Rv0891c 300 hypothetical protein Rv0891c #12 Rv0894 228 hypothetical protein Rv0894 #13 Rv0895 76 hypothetical protein Rv0895 #14 gltA2 172 gltA2 #15 sucC 300 sucC #16 fum 30 fum #17 Rv1099c 100 hypothetical protein Rv1099c #18 mdh 170 mdh #19 sucA 192 sucA #20 Rv1249c 196 hypothetical protein Rv1249c #21 acn 157 acn #22 frdA 300 frdA #23 sucB 263 sucB #24 scoA 82 scoA #25 fadD35 115 fadD35 #26 pca 24 pca #27 Rv2969c 96 hypothetical protein Rv2969c #28 lipN 300 lipN #29 lpdA 202 lpdA #30 sdhC 236 sdhC #31 sdhA 128 sdhA #32 icd1 282 icd1 Motif number 1 CGTGTTATCTCGTCGAAGGGTACACAGAGA 2 42 0 CGTCGAAGGG 0.660285 -38 GGACCCATCGGCCCGGCCGGATCATGCCGT 3 19 0 GCCCGGCCGG 0.981592 -126 TGGCATGATCCGGCGGACCCATCGGCCCGG 3 33 0 CGGCGGACCC 0.947719 -112 GGTCTACTCGGCCCAATGGCATGATCCGGC 3 49 0 GCCCAATGGC 0.414332 -96 TACTAGCTATCGACGGACGGAGTCGTTGGG 3 77 0 CGACGGACGG 0.710197 -68 TCACACAGCCGGTCGCCAGGTGTGATCACA 4 72 0 GGTCGCCAGG 0.667952 -142 TATAGCGGGCCGGCAACGCGCCGGACACAG 4 163 1 CGGCAACGCG 0.868658 -51 CTCACACTACCGCCGGGGCCACAATGGCTT 5 13 0 CGCCGGGGCC 0.890487 -55 GCTGCCATGACCGCGGAAGGGGGATCACGG 6 29 0 CCGCGGAAGG 0.922612 -31 CGCGCTGGTCAGCTGCCATGACCGCG 6 44 0 GGTCAGCTGC 0.599131 -16 GATTACCGGTCGGCACCCGGAACCGAGCCG 7 15 1 CGGCACCCGG 0.872564 -23 GTCGAGTGCTCGTCGGCCTGACCCAGTAGG 8 28 0 CGTCGGCCTG 0.821904 -36 ACGCCGGCCGGTCCTTCTCAC 9 2 1 CGCCGGCCGG 0.980392 -299 TACTGCTCAACGCCAACCCCAAGAGGACGG 9 45 1 CGCCAACCCC 0.62724 -256 CCCAAGAGGACGGCAGACGCAAAGTGAGCC 9 62 1 CGGCAGACGC 0.866529 -239 GAACAAACCACCGCGACACGGCGTCTGTCA 9 109 1 CCGCGACACG 0.88885 -192 GTTGTGTGTGCCGCGAGGTGGGTGTGTCGG 9 141 0 CCGCGAGGTG 0.550513 -160 GTCCCTTTTCGCACGGCGTGTCGAGAGCTT 9 191 1 GCACGGCGTG 0.777494 -110 GTGGGCGATAGGCCGGCACGGCTCACCGGC 9 230 1 GGCCGGCACG 0.907199 -71 GGCCGGCACGGCTCACCGGCGCTAGGCGCG 9 240 1 GCTCACCGGC 0.754803 -61 GCGACGCTACGCGCGCCTAGCGCCGGTGAG 9 251 0 GCGCGCCTAG 0.439923 -50 GCGCGCGTAGCGTCGCTGGCAGAGTCCGAC 9 265 1 CGTCGCTGGC 0.65439 -36 AAGATCCTTTCGTCGGACTCTGCCAGCGAC 9 276 0 CGTCGGACTC 0.498032 -25 GCACGCTCATCGCCGGCACCGTGATTGGCA 10 22 1 CGCCGGCACC 0.928907 -65 TCACACCTGGCCCCGGCAACGACGCTACCG 10 57 0 CCCCGGCAAC 0.731826 -30 CGACAGCCCACCGCAGCGTCAGCGCTACCC 11 72 0 CCGCAGCGTC 0.918261 -229 CGGTCGTGGGCCGCGGTAGCATCCCGCGGG 11 100 1 CCGCGGTAGC 0.911615 -201 TGGGCGCTCGCGGCGGCCCGCGGGATGCTA 11 116 0 CGGCGGCCCG 0.988272 -185 CTTCGGCGCTGCACGGTGGGCGCTCGCGGC 11 132 0 GCACGGTGGG 0.774606 -169 AACACCTTCGCGGCGCCGCGAAGCCAATAA 11 247 0 CGGCGCCGCG 0.968173 -54 CGACAGCGGTGGGCGGACTGGAGCAACTAG 12 21 0 GGGCGGACTG 0.764585 -208 CGGTATCCCAGCGCAGTCGGCCGTGCACAC 12 49 1 GCGCAGTCGG 0.831707 -180 CGCAAAACATCGGCGAATGCGCGTAGAAGT 12 101 0 CGGCGAATGC 0.571917 -128 GTTTTGCGATCCGCGGCGGGTCTATGGTGC 12 123 1 CCGCGGCGGG 0.996442 -106 GTAGCTTAACCGTCGGTGGGAATTGACCGC 13 20 1 CGTCGGTGGG 0.883615 -57 TGGGAATTGACCGCGCCACCCATAGCAGTC 13 36 1 CCGCGCCACC 0.907485 -41 ACGGACGCCGCGAGTCATCACC 14 3 1 GGACGCCGCG 0.718469 -170 GCCGCTGCGCGCTCGGCCGGGTGATGACTC 14 22 0 GCTCGGCCGG 0.969314 -151 CCGGCCGAGCGCGCAGCGGCTTACCTTACG 14 32 1 GCGCAGCGGC 0.983438 -141 CTTACCTTACGCGCGGCCGCCCATGGTGCC 14 51 1 GCGCGGCCGC 0.993459 -122 ACCCCACCCCGGGCAGGCGGGTCATCCCGA 14 85 1 GGGCAGGCGG 0.775947 -88 ATCAGCCAAAGCGCGAAGGGGTTCTC 14 157 1 GCGCGAAGGG 0.900752 -16 ACGGGCGATACGGTGCTGGGAC 15 3 1 GGGCGATACG 0.438227 -298 TCTGAAATGTCCTCGGATCGTGACCATAAC 15 36 1 CCTCGGATCG 0.537624 -265 GAGACGTTATCCGCAACCGGATGGTAGTGG 15 80 1 CCGCAACCGG 0.887204 -221 GTGAGCTGTGCCACACCGGGTGGATGCGGC 15 176 1 CCACACCGGG 0.589924 -125 CCGATTAACTCCGCGGCCGCATCCACCCGG 15 191 0 CCGCGGCCGC 0.994603 -110 CGGAGTTAATCGGCGGTCTCGATACAGTTC 15 208 1 CGGCGGTCTC 0.773233 -93 GTGCCGAAATCGGCGACTCGCACGGAGAAC 15 234 0 CGGCGACTCG 0.801828 -67 TCGCCGATTTCGGCACCGCCTACCTATTGG 15 248 1 CGGCACCGCC 0.891489 -53 TCGTCGACGGCCGCGGTGGCCAGCCACGAC 17 30 1 CCGCGGTGGC 0.979328 -71 CGGTGGCCAGCCACGACCCGTCGCACACCA 17 43 1 CCACGACCCG 0.680417 -58 GGGCTTCCCGGCGCGATGGCCTGGTGTGCG 17 64 0 GCGCGATGGC 0.88703 -37 CGCCGGGAAGCCCCGGACCGCAACCTGGCC 17 81 1 CCCCGGACCG 0.891741 -20 ATCAGATCCACCGCGATCGGAGGTTGAC 18 9 0 CCGCGATCGG 0.837978 -162 GTTGAAACTAGCGCACCGGCACCGGACGGA 18 119 0 GCGCACCGGC 0.93086 -52 CAGAGAGACCGGGCAACGCGCG 19 3 0 GGGCAACGCG 0.844958 -190 AGCCTTTATGGGGCAGACCGTTCACCGACT 19 54 1 GGGCAGACCG 0.759769 -139 CAAGCGCATTGCGCGGCGCCTGCTGGCAGT 19 81 0 GCGCGGCGCC 0.994001 -112 CTTATGTTGGCCACGGCCGCTGTTCGCCTC 19 136 0 CCACGGCCGC 0.947114 -57 GCATGCACCAGGGCAACCCGTATCGTCACC 20 63 1 GGGCAACCCG 0.765153 -134 GCGGTTCACCGCTCGAAGCGGAATAATGCG 20 104 0 GCTCGAAGCG 0.574597 -93 CGAAACACATGCTCGGATCGTTGAACCGGC 20 142 1 GCTCGGATCG 0.489307 -55 GCCAGTAGCACGTCGGCAGGAAGGATGCG 21 10 0 CGTCGGCAGG 0.915093 -148 TCGCACTTCGGCGCGCACCCACACGGCAAC 21 54 1 GCGCGCACCC 0.809881 -104 CGGGCCGTGTCGACGGCGTGGTGTCAGCCT 21 106 0 CGACGGCGTG 0.76602 -52 CGACACGGCCCGTCGGCGGGCGAACCAAAT 21 124 1 CGTCGGCGGG 0.980203 -34 AACCATGTGCCCGCAGGGCGCTTTTTGCTT 22 95 0 CCGCAGGGCG 0.855692 -206 ACCACATCGAGCGCGACGACGAAGGCCTTG 22 135 1 GCGCGACGAC 0.843172 -166 CCGGATTTCGCGGCAGCCGCAGGAAAACTT 22 179 0 CGGCAGCCGC 0.970811 -122 TGAAGGACGAGCACAGCGGCGATCACGAAG 22 267 1 GCACAGCGGC 0.851977 -34 CGCACCTCCGCCCACCGGGACTTGCTGTT 23 10 1 GCCCACCGGG 0.825296 -254 GCTACGGTTTGGGCGACTGGTTGCAACAGC 23 34 0 GGGCGACTGG 0.836619 -230 TAGCAAGGACGGCCGACTGCACCGATGTCC 23 60 1 GGCCGACTGC 0.68546 -204 GTTGCCGACACCTCGGCGGGGACATCGGTG 23 79 0 CCTCGGCGGG 0.984645 -185 GAGTTGGTGGCCCCGGCGGCCGTTGCCGAC 23 100 0 CCCCGGCGGC 0.991687 -164 CACATCCAGGGCGCGGCGAGTTGGTGGCCC 23 117 0 GCGCGGCGAG 0.960436 -147 CTGTCACTGCGCCCGGAGCGACACACATCC 23 140 0 GCCCGGAGCG 0.919059 -124 TCACACGGTCGCGCACCGGGTGCGGAACCC 23 191 0 GCGCACCGGG 0.924378 -73 CTCGATCGATCGTCGGTCGGCGCAGGTCCA 23 232 0 CGTCGGTCGG 0.819456 -32 CCTAGACGCACCGCGGGGGCAATGGTATTC 24 15 1 CCGCGGGGGC 0.973839 -68 ACCGCAGAGCCTCCTAGCATT 24 72 0 CCGCAGAGCC 0.90156 -11 TCTAGCGTACCGGCGGCAAGCCAGCCTCGA 27 12 0 CGGCGGCAAG 0.831949 -85 CGCGGTCAGGCGACGGCGCCTCTAGCGTAC 27 32 0 CGACGGCGCC 0.93773 -65 CGTCGCCTGACCGCGGCCGCGACAAGCCGA 27 47 1 CCGCGGCCGC 0.994603 -50 GAAGGCTGTGGCTCAGCACCTGCCCAGGTG 28 78 0 GCTCAGCACC 0.657927 -223 CCACAGCCTTCGGCGACGGCGGCGTAAGCC 28 97 1 CGGCGACGGC 0.979581 -204 AGTCCGGCGTGCCCAACGGCCAACTCTACG 28 166 0 GCCCAACGGC 0.821871 -135 CCGTTGGGCACGCCGGACTCGCGGCACCTA 28 177 1 CGCCGGACTC 0.626501 -124 CCTACCGCTTGCCCGGTGTCGGCCGGCAGG 28 203 1 GCCCGGTGTC 0.701698 -98 GCCCGGTGTCGGCCGGCAGGACCCGAAAGA 28 213 1 GGCCGGCAGG 0.937553 -88 GACACTCGATCCGCGCCGTCAGGCTGGATG 28 243 0 CCGCGCCGTC 0.916166 -58 ACTCTGTCACGCGCAGCAACGGACACTCGA 28 264 0 GCGCAGCAAC 0.575708 -37 AAAGCTTAGACGGCGGGGGCTCGGGTGGTA 29 16 1 CGGCGGGGGC 0.968542 -187 CCGCACCGCAGCGCGGCGCGATGGGTACCA 29 41 0 GCGCGGCGCG 0.993396 -162 GTGCTTGACTGCTCGGCTCCTCCTCACGCC 29 85 1 GCTCGGCTCC 0.843895 -118 GATGCACGCCGCGCAGCGGCGTGAGGAGGA 29 102 0 GCGCAGCGGC 0.983438 -101 GTCCAACACAGCTCGGCGACGATGCACGCC 29 122 0 GCTCGGCGAC 0.859369 -81 GTGTTGGACTGCTCGGCTCCTCCTCACGCC 29 143 1 GCTCGGCTCC 0.843895 -60 GATGCACGCCGCGCAGCGGCGTGAGGAGGA 29 160 0 GCGCAGCGGC 0.983438 -43 CCATAACCTAGCTCGGCGACGATGCACGCC 29 180 0 GCTCGGCGAC 0.859369 -23 TCGGCAACCCCGCTCGTCGAT 30 2 1 CGGCAACCCC 0.813248 -235 CAACCCCGCTCGTCGATGGGCCGACTAAGA 30 15 1 CGTCGATGGG 0.604232 -222 GCCAGCCTAACCCCGGATCCACACACGATC 30 48 1 CCCCGGATCC 0.684048 -189 GCCAGGTTGCCCGCGGTGTCGAACAGTCCG 30 83 0 CCGCGGTGTC 0.880778 -154 GTGAATACAACGGCGACAACCGTCTCGCGC 30 175 1 CGGCGACAAC 0.522999 -62 GCCGCCGCCCGCGCGAGACGGTTGTCGCCG 30 185 0 GCGCGAGACG 0.477448 -52 CGTCTCGCGCGGGCGGCGGCCACCTCGGAC 30 195 1 GGGCGGCGGC 0.994936 -42 GCGGCGGCCACCTCGGACCCTGTATCGGGG 30 207 1 CCTCGGACCC 0.842941 -30 AAGGCCCGGAAGGAGCACATGAT 31 4 1 GCCCGGAAGG 0.791498 -125 GCCACCTCTCCCCCGCAAGCGGGCGGTACC 31 37 1 CCCCGCAAGC 0.533735 -92 CCCCGCAAGCGGGCGGTACCCCCACCTCAT 31 47 1 GGGCGGTACC 0.810335 -82 GCGACGAGGGGGCCGCAGCGATGAGGTGGG 31 67 0 GGCCGCAGCG 0.663495 -62 GTGGGGGCACCCCCAGCCGCGAAGCGACGA 31 90 0 CCCCAGCCGC 0.943331 -39 ACTGCATCGTCGGCGGCGGCG 31 118 1 CGGCGGCGGC 0.995823 -11 TTCCCCGTCTGGTCAGGGGCCCGTCATGGC 32 16 1 GGTCAGGGGC 0.59329 -267 TGCGCGGCAAGCGCGGGTCCGCCATGACGG 32 36 0 GCGCGGGTCC 0.766485 -247 CGCGCTTGCCGCGCAGCCGGCGATGGCTAC 32 51 1 GCGCAGCCGG 0.969908 -232 AACCCTCCAACCGCGGTGGGGTGCCCCGGG 32 96 0 CCGCGGTGGG 0.97728 -187 CCGGCTTGCTGGCCGGCAACCCTCCAACCG 32 113 0 GGCCGGCAAC 0.634516 -170 CAGCGTCAAGCCCCGGCTTGCTGGCCGGCA 32 125 0 CCCCGGCTTG 0.706853 -158 CGGTCATGAGCGCCAGCGTCAAGCCCCGGC 32 138 0 CGCCAGCGTC 0.770188 -145 AGCACAACTCCGGCGGTCTCAACTGGCCCT 32 210 1 CGGCGGTCTC 0.773233 -73 TACTAGCAGCCCGCGCGGGCCCCTAGCGGC 32 246 0 CCGCGCGGGC 0.570523 -37 ********** Masking position 4 Map Score: 183.512 Number of sites scoring better than the average of aligned sites = 127440 Number in coding regions = 119694 Number in noncoding regions = 7746 Number of orfs with sites within 600 bp upstream = 1681 Fraction of orfs with sites within 600 bp upstream = 0.269997 Motif number 2 TCGGCCCGGCCGGATCATGCCGTATCGCGAA 3 11 0 CGGATCTGCC 0.826009 -134 ATGGGTCCGCCGGATCATGCCATTGGGCCGA 3 41 1 CGGATCTGCC 0.826009 -104 GGTGCTCCCTGGGCTGGCGGTGTTACAGATC 3 122 0 GGGCTGCGGT 0.935022 -23 TGTGTCCGGCGCGTTGCCGGCCCGCTATACC 4 161 0 GCGTTGCGGC 0.859325 -53 AGCCATTGTGGCCCCGGCGGTAGTGTGAGCT 5 14 1 GCCCCGCGGT 0.632275 -54 CGTATTCGGCTCCTCGTCAAAATCATG 5 51 0 CGGCTCTCGT 0.790513 -17 CCGCGGAAGGGGGATCACGGTCTACGACCTT 6 18 0 GGGATCCGGT 0.780854 -42 TCCCCCTTCCGCGGTCATGGCAGCTGACCAG 6 35 1 GCGGTCTGGC 0.6092 -25 GGCTCGGTTCCGGGTGCCGACCGGTAATCGT 7 13 0 CGGGTGCGAC 0.890703 -25 ACGCCGGCCGGTCCTTCTCACCTAG 9 5 1 CGGCCGTCCT 0.577715 -296 AACAAACCACCGCGACACGGCGTCTGTCACA 9 110 1 CGCGACCGGC 0.743058 -191 GCGCCGGTGAGCCGTGCCGGCCTATCGCCCA 9 231 0 GCCGTGCGGC 0.86093 -70 GGCGCGCGTAGCGTCGCTGGCAGAGTCCGAC 9 264 1 GCGTCGTGGC 0.627011 -37 ACGACGCTACCGGCTGGTGCCAATCACGGTG 10 38 0 CGGCTGTGCC 0.952477 -49 CCAGCCGGTAGCGTCGTTGCCGGGGCCAGGT 10 52 1 GCGTCGTGCC 0.513157 -35 GCTTCGGGTAGCGCTGACGCTGCGGTGGGCT 11 67 1 GCGCTGCGCT 0.838773 -234 ACGCTGCGGTGGGCTGTCGGTCGTGGGCCGC 11 83 1 GGGCTGCGGT 0.935031 -218 TGCACGGTGGGCGCTCGCGGCGGCCCGCGGG 11 122 0 GCGCTCCGGC 0.952627 -179 TGTGCTTATTGGCTTCGCGGCGCCGCGAAGG 11 242 1 GGCTTCCGGC 0.785167 -59 AGTCCGCCCACCGCTGTCGGTATCCCAGCGC 12 32 1 CCGCTGCGGT 0.920465 -197 CGGTATCCCAGCGCAGTCGGCCGTGCACACA 12 49 1 GCGCAGCGGC 0.850632 -180 TTATTGAAGACCGATCCTGGCACATAAATGG 12 152 0 CCGATCTGGC 0.822859 -77 CACGACCCCTCGCTTCGCGACGTTGTTATTG 12 177 0 CGCTTCCGAC 0.460379 -52 CGCGAAGCGAGGGGTCGTGACGTGAGAGGGC 12 189 1 GGGGTCTGAC 0.734132 -40 TTTGCTGCGGGTGTTCCTCTCGACTGCT 13 59 0 CGGGTGTCCT 0.683377 -18 GTGATGACTCGCGGCGTCCGT 14 1 0 GCGGCGCCGT 0.584515 -172 CGCGCTCGGCCGGGTGATGACTCGCGGCGTC 14 14 0 CGGGTGTGAC 0.809132 -159 TTACGCGCGGCCGCCCATGGTGCCAGAGACC 14 57 1 CCGCCCTGGT 0.744867 -116 CCCGGGCAGGCGGGTCATCCCGATAGCGACT 14 92 1 CGGGTCTCCC 0.814051 -81 GAGAACCCCTTCGCGCTTTGGCTGATA 14 156 0 CCCTTCCGCT 0.388592 -17 GAAATGTCCTCGGATCGTGACCATAACGTTA 15 39 1 CGGATCTGAC 0.562851 -262 GAGTTAATCGGCGGTCTCGATACAGTTCTCC 15 210 1 GCGGTCCGAT 0.502257 -91 GTGCGAGTCGCCGATTTCGGCACCGCCTACC 15 241 1 CCGATTCGGC 0.348013 -60 GGGCTCACCGTCTTCGCTCGG 15 290 0 GGGCTCCCGT 0.838292 -11 CTGGCCACCGCGGCCGTCGACGAACCGGATC 17 22 0 CGGCCGCGAC 0.837784 -79 TGGTGTGCGACGGGTCGTGGCTGGCCACCGC 17 42 0 CGGGTCTGGC 0.95415 -59 GGGGCTTCCCGGCGCGATGGCCTGGTGTGCG 17 64 0 GGCGCGTGGC 0.521638 -37 AGCCCCGGACCGCAACCTGGCC 17 89 1 CGCAACTGGC 0.421661 -12 GTCAACCTCCGATCGCGGTGGATCTGATC 18 9 1 CCGATCCGGT 0.745578 -162 TGGATCTGATCGGGCGGTGCTCCAGGTTACG 18 29 1 CGGGCGTGCT 0.743823 -142 CTCCAGGTTACGCGTCCCGGTATGGAACTTG 18 48 1 CGCGTCCGGT 0.858144 -123 AGATGTCCGTCCGGTGCCGGTGCGCTAGTTT 18 114 1 CCGGTGCGGT 0.906141 -57 CGCGCGTTGCCCGGTCTCTCT 19 1 1 CGCGCGTGCC 0.767494 -192 AGCCTTTATGGGGCAGACCGTTCACCGACTG 19 54 1 GGGCAGCCGT 0.564988 -139 CATTGCGCGGCGCCTGCTGGCAGTCGGTGAA 19 74 0 CGCCTGTGGC 0.926119 -119 TTGGCCACGGCCGCTGTTCGCCTCGATTCTT 19 129 0 CCGCTGTCGC 0.878148 -64 TTGGGTCACGGGCGTCACGGCATGCACCAGG 20 44 1 GGCGTCCGGC 0.519702 -153 GGTGACGATACGGGTTGCCCTGGTGCATGCC 20 62 0 CGGGTTCCCT 0.185273 -135 GGTAGCGGCGCGGTTCACCGCTCGAAGCGGA 20 112 0 CGGTTCCCGC 0.842303 -85 GGCACGTTACGCGCTGCTCGCACTTCGGCGC 21 37 1 GCGCTGTCGC 0.837526 -121 CCGTCGACACGGCCCGTCGGCGGGCGAACCA 21 120 1 GGCCCGCGGC 0.897519 -38 CCCGCCTCCTCCGGTGCTGGCACGTGACCTA 22 34 0 CCGGTGTGGC 0.938575 -267 AGCGCCCTGCGGGCACATGGTTGACGGCGAT 22 103 1 GGGCACTGGT 0.611997 -198 ATGGTTGACGGCGATCACCACATCGAGCGCG 22 119 1 GCGATCCCAC 0.279697 -182 AGTTTTCCTGCGGCTGCCGCGAAATCCGGCA 22 180 1 CGGCTGCGCG 0.424498 -121 CGCACCTCCGCCCACCGGGAC 23 1 1 CGCACCCCGC 0.543427 -263 CTCCGCCCACCGGGACTTGCTGTTGCAACCA 23 16 1 CGGGACTGCT 0.536349 -248 GTGCAGTCGGCCGTCCTTGCTACGGTTTGGG 23 51 0 CCGTCCTGCT 0.307924 -213 GCCGACTGCACCGATGTCCCCGCCGAGGTGT 23 71 1 CCGATGCCCC 0.686586 -193 GTGGCCCCGGCGGCCGTTGCCGACACCTCGG 23 93 0 CGGCCGTGCC 0.913812 -171 TCCAGGGCGCGGCGAGTTGGTGGCCCCGGCG 23 112 0 GGCGAGTGGT 0.359958 -152 CACCTGGGTTCCGCACCCGGTGCGCGACCGT 23 186 1 CCGCACCGGT 0.70907 -78 GAATACCATTGCCCCCGCGGTGCGTCTAGGG 24 14 0 GCCCCCCGGT 0.611905 -69 GGTTCCTCCGCCTGGTGCCTACCGCATGT 25 97 0 CGCCTGTGCC 0.887332 -19 GTCGAGGCTGGCTTGCCGCCGGTACGCTAG 27 10 1 GGCTTGCGCC 0.724094 -87 GAGGCGCCGTCGCCTGACCGCGGCCGCGACA 27 40 1 CGCCTGCCGC 0.903696 -57 CTCGATTTGTCGGCTTGTCGCGGCCGCGGTC 27 55 0 CGGCTTTCGC 0.407284 -42 CACCGACTTGGGGATCACGATATTACCGAGT 28 27 1 GGGATCCGAT 0.367482 -274 ATCAACACCTGGGCAGGTGCTGAGCCACAGC 28 73 1 GGGCAGTGCT 0.519612 -228 GCGGCTTACGCCGCCGTCGCCGAAGGCTGTG 28 98 0 CCGCCGCGCC 0.921307 -203 ACCGGGCAAGCGGTAGGTGCCGCGAGTCCGG 28 189 0 CGGTAGTGCC 0.527487 -112 TACCGCTTGCCCGGTGTCGGCCGGCAGGACC 28 205 1 CCGGTGCGGC 0.954784 -96 GGATGTCTTTCGGGTCCTGCCGGCCGACACC 28 217 0 CGGGTCTGCC 0.938712 -84 GGGCTGCTCCCTACAAAACTC 28 290 0 GGGCTGTCCC 0.849313 -11 ATGGGTACCACCCGAGCCCCCGCCGTCTAAG 29 20 0 CCCGAGCCCC 0.394844 -183 TCGGGTGGTACCCATCGCGCCGCGCTGCGGT 29 36 1 CCCATCCGCC 0.644231 -167 CGCTGCGGTGCGGGTCATCGTCAAGCTGTGC 29 58 1 CGGGTCTCGT 0.758799 -145 CTTGACTGCTCGGCTCCTCCTCACGCCGCTG 29 88 1 CGGCTCTCCT 0.703523 -115 TTGGACTGCTCGGCTCCTCCTCACGCCGCTG 29 146 1 CGGCTCTCCT 0.703523 -57 TCGGCAACCCCGCTCGTCGATGG 30 3 1 GGCAACCCGC 0.274203 -234 CGACACCGCGGGCAACCTGGCCAAGTTAAGC 30 92 1 GGCAACTGGC 0.341279 -145 CCGCGCGAGACGGTTGTCGCCGTTGTATTCA 30 176 0 CGGTTGCGCC 0.903261 -61 CCGTCTCGCGCGGGCGGCGGCCACCTCGGAC 30 194 1 CGGGCGCGGC 0.946736 -43 ACCGGGATCTCCCCGATACAGGGT 30 223 0 GGGATCCCCC 0.51017 -14 TCATCGCTGCGGCCCCCTCGTCGCTTCGCGG 31 73 1 GGCCCCTCGT 0.359279 -56 GCCCCCTCGTCGCTTCGCGGCTGGGGGTGCC 31 84 1 CGCTTCCGGC 0.842447 -45 TTCGCGGCTGGGGGTGCCCCCACTGCATCGT 31 97 1 GGGGTGCCCC 0.866229 -32 CGCCGCCGCCGACGATGCAGTGG 31 116 0 CCGCCGCGAC 0.74812 -13 TGGTCAGGGGCCCGTCATGGCGGACCCGCGC 32 25 1 CCCGTCTGGC 0.806712 -258 TGGCGGACCCGCGCTTGCCGCGCAGCCGGCG 32 42 1 GCGCTTCCGC 0.351965 -241 TGCCGCGCAGCCGGCGATGGCTACTCAACCT 32 57 1 CCGGCGTGGC 0.873845 -226 TGGGGTGCCCCGGGTGATGACCAGGTTGAGT 32 79 0 CGGGTGTGAC 0.809132 -204 TCATCACCCGGGGCACCCCACCGCGGTTGGA 32 90 1 GGGCACCCAC 0.366392 -193 CGCGGTTGGAGGGTTGCCGGCCAGCAAGCCG 32 111 1 GGGTTGCGGC 0.913955 -172 AGCAAGCCGGGGCTTGACGCTGGCGCTCATG 32 133 1 GGCTTGCGCT 0.462882 -150 CTTGACGCTGGCGCTCATGACCGACTCGAAG 32 145 1 GCGCTCTGAC 0.657221 -138 ****** **** Masking position 3 Map Score: 122.611 Number of sites scoring better than the average of aligned sites = 97607 Number in coding regions = 91512 Number in noncoding regions = 6095 Number of orfs with sites within 600 bp upstream = 1682 Fraction of orfs with sites within 600 bp upstream = 0.270157 Motif number 3 GTTCGCTTCCGGTGAACGCCGAGGTGGAACTTA 4 106 1 GTGAGCCGAG 0.969883 -108 CCGCAGTAAGGTCGTAGACCGTGATCCCCCTTC 6 11 1 GCGAACCGTG 0.779004 -49 GTGTCGGTGTGACAGACGCCGTGTCGCGGTGGT 9 115 0 GCAAGCCGTG 0.860797 -186 ACGGCTCACCGGCGCTAGGCGCGCGTAGCGTCG 9 247 1 GCGTGGCGCG 0.908126 -54 TAGCGTCGCTGGCAGAGTCCGACGAAAGGATCT 9 272 1 GCAATCCGAC 0.134037 -29 TTCTATAGTCGACGCATCTCGCGTTCTAGGCAG 11 12 1 GCGACTCGCG 0.871952 -289 TGGGCTGTCGGTCGTGGGCCGCGGTAGCATCCC 11 92 1 GCGGGCCGCG 0.982093 -209 GTGGGCCGCGGTAGCATCCCGCGGGCCGCCGCG 11 105 1 GAGACCCGCG 0.926705 -196 GTATCCCAGCGCAGTCGGCCGTGCACACATATC 12 51 1 GAGCGCCGTG 0.668676 -178 CACAATCACAGCCGAATTCCGCGCTGAAGTTGC 15 109 0 GCGATCCGCG 0.989046 -192 CGAGACCGCCGATTAACTCCGCGGCCGCATCCA 15 196 0 GTTATCCGCG 0.668568 -105 GGTAGGCGGTGCCGAAATCGGCGACTCGCACGG 15 239 0 GCGATCGGCG 0.79046 -62 TATTGGTCGAGCAGTAAGCCGAGCGAAGACGGT 15 272 1 GAGAGCCGAG 0.90409 -29 GATCCGGTTCGTCGACGGCCGCGGTGGCCAGCC 17 22 1 GCGCGCCGCG 0.986978 -79 GGCCACGGCCGCTGTTCGCCTCGATTCTTCTGC 19 125 0 GTGTGCCTCG 0.50884 -68 GGGTTGCCCTGGTGCATGCCGTGACGCCCGTGA 20 49 0 GTGAGCCGTG 0.969864 -148 CGCTTCGAGCGGTGAACCGCGCCGCTACCGAAA 20 114 1 GTGACGCGCC 0.576695 -83 GTGGGTGCGCGCCGAAGTGCGAGCAGCGCGTAA 21 43 0 GCGATGCGAG 0.845648 -115 CGAGCGCGACGACGAAGGCCTTGCCTACGACGA 22 142 1 GCGAGCCTTG 0.851796 -159 TGGTAGAAATGCCGGATTTCGCGGCAGCCGCAG 22 187 0 GCGATTCGCG 0.851621 -114 ACGGCAAGGTGTTGAAGGACGAGCACAGCGGCG 22 255 1 GTGAGACGAG 0.538206 -46 GGTCCCTAGACGCACCGCGGGGGCAATGGTA 24 9 1 GCGACGCGGG 0.661359 -74 CGCCGCCGTCGCCGAAGGCTGTGGCTCAGCACC 28 88 0 GCGAGCTGTG 0.687211 -213 CGGCGACGGCGGCGTAAGCCGCGAATAGTGCTG 28 107 1 GCGAGCCGCG 0.996853 -194 TGACCAAAGTGTTGAATGCCGACCAGCACTATT 28 130 0 GTGAGCCGAC 0.784551 -171 CCGGGCAAGCGGTAGGTGCCGCGAGTCCGGCGT 28 186 0 GTAGGCCGCG 0.633009 -115 AAGACATCCAGCCTGACGGCGCGGATCGAGTGT 28 239 1 GCTAGGCGCG 0.849966 -62 GCTCGGCGACGATGCACGCCGCGCAGCGGCGTG 29 109 0 GTGAGCCGCG 0.993437 -94 GCCGAGCTGTGTTGGACTGCTCGGCTCCTCCTC 29 135 1 GTGATGCTCG 0.428274 -68 GCTCGGCGACGATGCACGCCGCGCAGCGGCGTG 29 167 0 GTGAGCCGCG 0.993437 -36 GTCCGAGGTGGCCGCCGCCCGCGCGAGACGGTT 30 192 0 GCGCCCCGCG 0.957581 -45 * ** * ****** Masking position 1 Map Score: 43.4384 Number of sites scoring better than the average of aligned sites = 8232 Number in coding regions = 7746 Number in noncoding regions = 486 Number of orfs with sites within 600 bp upstream = 386 Fraction of orfs with sites within 600 bp upstream = 0.0619981 Motif number 4 TGCTCCCTGGGCTGGCGGTGTTACAGATCA 3 121 0 GCTGGCGGTG 0.945575 -24 ACAGCCGGTCGCCAGGTGTGATCACAGCGT 4 68 0 GCCAGGTGTG 0.904409 -146 CGACCATTAGGGTAGGGGCC 8 54 1 GGTAGGGGCC 0.908358 -10 TGTGCCGCGAGGTGGGTGTGTCGGTGTGAC 9 135 0 GGTGGGTGTG 0.806533 -166 CGTCTGGTGGGCGATAGGCCGGCACGGCTC 9 224 1 GCGATAGGCC 0.237099 -77 GCTCACCGGCGCTAGGCGCGCGTAGCGTCG 9 250 1 GCTAGGCGCG 0.47969 -51 GTCGGACTCTGCCAGCGACGCTACGCGCGC 9 265 0 GCCAGCGACG 0.333865 -36 CGACGCTACCGGCTGGTGCCAATCACGGTG 10 38 0 GGCTGGTGCC 0.617778 -49 CGTTGCCGGGGCCAGGTGTGAGAATTCTCG 10 66 1 GCCAGGTGTG 0.904409 -21 TGCCTAGAACGCGAGATGCGTCGACTATAG 11 14 0 GCGAGATGCG 0.668481 -287 TCGCGTTCTAGGCAGGAGTGCTCCAGGAAT 11 30 1 GGCAGGAGTG 0.5935 -271 GCTGCGGTGGGCTGTCGGTCGTGGGCCGCG 11 85 1 GCTGTCGGTC 0.453835 -216 CACGGTGGGCGCTCGCGGCGGCCCGCGGGA 11 121 0 GCTCGCGGCG 0.911069 -180 GAACATCGCTGCGAGAGGCCTGTTTCGAGG 11 183 1 GCGAGAGGCC 0.798096 -118 TCGAGGATGGGCCAGGTGTCTTCCCCGAAC 11 207 1 GCCAGGTGTC 0.851966 -94 GATACCGACAGCGGTGGGCGGACTGGAGCA 12 26 0 GCGGTGGGCG 0.681725 -203 ACGTCGCGAAGCGAGGGGTCGTGACGTGAG 12 185 1 GCGAGGGGTC 0.910627 -44 GCTCGCTTATGCCGGCGGTGG 12 218 1 GCCGGCGGTG 0.965747 -11 CCTCTCGACTGCTATGGGTGGCGCGGTCAA 13 42 0 GCTATGGGTG 0.596318 -35 TTTGCTGCGGGTGTTCCTCTCGA 13 64 0 GCTGCGGGTG 0.344004 -13 CGCCTGCCCGGGGTGGGGTCTCTGGCACCA 14 74 0 GGGTGGGGTC 0.683409 -99 TGCCACACCGGGTGGATGCGGCCGCGGAGT 15 184 1 GGTGGATGCG 0.61793 -117 GTTCGTCGACGGCCGCGGTGGCCAGCCACG 17 28 1 GGCCGCGGTG 0.87948 -73 CGGCGCGATGGCCTGGTGTGCGACGGGTCG 17 56 0 GCCTGGTGTG 0.763827 -45 GGCCAGGTTGCGGTCCGGGGCTTCC 17 86 0 GGTTGCGGTC 0.659914 -15 CGCGGCGCCTGCTGGCAGTCGGTGAACGGT 19 70 0 GCTGGCAGTC 0.449516 -123 CGTTTGGCTTGCTAGCGGTGGCATTGGGTC 20 21 1 GCTAGCGGTG 0.93773 -176 CATGTGTTTCGGTAGCGGCGCGGTTCACCG 20 123 0 GGTAGCGGCG 0.92928 -74 GCGCCGAAGTGCGAGCAGCGCGTAACGTGC 21 38 0 GCGAGCAGCG 0.593879 -120 CGTGTCGACGGCGTGGTGTCAGCCTAGCAG 21 101 0 GCGTGGTGTC 0.519413 -57 TCGTCGTCGCGCTCGATGTGGTGATCGCCG 22 127 0 GCTCGATGTG 0.436371 -174 AGTCCCGGTGGGCGGAGGTGCG 23 3 0 GGCGGAGGTG 0.857133 -261 TCCTTGCTACGGTTTGGGCGACTGGTTGCA 23 39 0 GGTTTGGGCG 0.306138 -225 CACACATCCAGGGCGCGGCGAGTTGGTGGC 23 119 0 GGGCGCGGCG 0.849799 -145 GCGGAACCCAGGTGGATGTCGAAACCTATC 23 170 0 GGTGGATGTC 0.411022 -94 CGTGTGATAGGCCAGAGGTGGACCTGCGCC 23 214 1 GCCAGAGGTG 0.893509 -50 GGTTCCTCCGCCTGGTGCCTACCGCATGT 25 97 0 GCCTGGTGCC 0.734875 -19 CCGCCGGTACGCTAGAGGCGCCGTCGCCTG 27 26 1 GCTAGAGGCG 0.879361 -71 GGCTTGTCGCGGCCGCGGTCAGGCGACGGC 27 45 0 GGCCGCGGTC 0.775599 -52 TCAACACCTGGGCAGGTGCTGAGCCACAGC 28 74 1 GGCAGGTGCT 0.260621 -227 CTGAGCCACAGCCTTCGGCGACGGCGGCGT 28 92 1 GCCTTCGGCG 0.480773 -209 CCGGGCAAGCGGTAGGTGCCGCGAGTCCGG 28 189 0 GGTAGGTGCC 0.754961 -112 CCTACCGCTTGCCCGGTGTCGGCCGGCAGG 28 203 1 GCCCGGTGTC 0.735249 -98 GCGCCGTCAGGCTGGATGTCTTTCGGGTCC 28 231 0 GCTGGATGTC 0.529633 -70 GAGTTTTGTAGGGAGCAGCCC 28 290 1 GGGAGCAGCC 0.353731 -11 AAGCTTAGACGGCGGGGGCTCGGGTGGTAC 29 17 1 GGCGGGGGCT 0.5673 -186 TGGCCAGGTTGCCCGCGGTGTCGAACAGTC 30 85 0 GCCCGCGGTG 0.92183 -152 TAAGGGGTTTGCCAGCGGTGAATACAACGG 30 158 1 GCCAGCGGTG 0.960688 -79 ACCGTCTCGCGCGGGCGGCGGCCACCTCGG 30 193 1 GCGGGCGGCG 0.956209 -44 CCGCTTGCGGGGGAGAGGTGGCGTGATCAT 31 29 0 GGGAGAGGTG 0.740711 -100 GCAGCGATGAGGTGGGGGTACCGCCCGCTT 31 53 0 GGTGGGGGTA 0.245282 -76 TCGCTTCGCGGCTGGGGGTGCCCCCACTGC 31 93 1 GCTGGGGGTG 0.955902 -36 CTGCATCGTCGGCGGCGGCG 31 119 1 GGCGGCGGCG 0.960283 -10 TCCCCGTCTGGTCAGGGGCCCGTCATGGCG 32 17 1 GTCAGGGGCC 0.380314 -266 AGTAGCCATCGCCGGCTGCGCGGCAAGCGC 32 52 0 GCCGGCTGCG 0.924995 -231 TTTACCGGCCGCTAGGGGCCCGCGCGGGCT 32 239 1 GCTAGGGGCC 0.941561 -44 ********** Masking position 1 Map Score: 78.0058 Number of sites scoring better than the average of aligned sites = 28539 Number in coding regions = 26785 Number in noncoding regions = 1754 Number of orfs with sites within 600 bp upstream = 967 Fraction of orfs with sites within 600 bp upstream = 0.155316 Motif number 5 CGCTTCCGGTGAACGCCGAGGTGGAACTTA 4 109 1 GAACGCCGAG 0.632105 -105 TCGGTGTTGTGTGTGCCGCGAGGTGGGTGT 9 146 0 GTGTGCCGCG 0.930238 -155 AAAGCTCTCGACACGCCGTGCGAAAAGGGA 9 192 0 ACACGCCGTG 0.462327 -109 CCTAGCGCCGGTGAGCCGTGCCGGCCTATC 9 236 0 GTGAGCCGTG 0.464472 -65 GCTCACCGGCGCTAGGCGCGCGTAGCGTCG 9 250 1 GCTAGGCGCG 0.775872 -51 CCGGCGATGAGCGTGCCGCGAGAATCG 10 8 0 GCGTGCCGCG 0.988221 -79 TATAGTCGACGCATCTCGCGTTCTAGGCAG 11 15 1 GCATCTCGCG 0.346098 -286 GCTGTCGGTCGTGGGCCGCGGTAGCATCCC 11 95 1 GTGGGCCGCG 0.822106 -206 GGCCGCGGTAGCATCCCGCGGGCCGCCGCG 11 108 1 GCATCCCGCG 0.929355 -193 CACGGTGGGCGCTCGCGGCGGCCCGCGGGA 11 121 0 GCTCGCGGCG 0.774027 -180 CCGATGTTTTGCGATCCGCGGCGGGTCTAT 12 118 1 GCGATCCGCG 0.897483 -111 ACGGACGCCGCGAGTCATCACC 14 3 1 GGACGCCGCG 0.922479 -170 CGCGCGTAAGGTAAGCCGCTGCGCGCTCGG 14 36 0 GTAAGCCGCT 0.618904 -137 AATCACAGCCGAATTCCGCGCTGAAGTTGC 15 109 0 GAATTCCGCG 0.48915 -192 GACCGCCGATTAACTCCGCGGCCGCATCCA 15 196 0 TAACTCCGCG 0.260953 -105 TGGTCGAGCAGTAAGCCGAGCGAAGACGGT 15 275 1 GTAAGCCGAG 0.503064 -26 CACCAGGCCATCGCGCCGGGAAGCCCCGGA 17 68 1 TCGCGCCGGG 0.759862 -33 GAGAGACCGGGCAACGCGCG 19 1 0 GCAACGCGCG 0.543908 -192 TCCTGCAAGCGCATTGCGCGGCGCCTGCTG 19 86 0 GCATTGCGCG 0.480867 -107 CACGGCCGCTGTTCGCCTCGATTCTTCTGC 19 125 0 GTTCGCCTCG 0.263588 -68 TTGCCCTGGTGCATGCCGTGACGCCCGTGA 20 49 0 GCATGCCGTG 0.864306 -148 TCACCAATGTCCACGCCGCATTATTCCGCT 20 88 1 CCACGCCGCA 0.570827 -109 GAGCGGTGAACCGCGCCGCTACCGAAACAC 20 120 1 CCGCGCCGCT 0.646402 -77 GCGCCGAAGTGCGAGCAGCGCGTAACGTGC 21 38 0 GCGAGCAGCG 0.638191 -120 CCGTGTGGGTGCGCGCCGAAGTGCGAGCAG 21 50 0 GCGCGCCGAA 0.505382 -108 CACGCTTCGTGATCGCCGCTGTGCTCGTCC 22 271 0 GATCGCCGCT 0.518038 -30 GGGGCCACCAACTCGCCGCGCCCTGGATGT 23 116 1 ACTCGCCGCG 0.837535 -148 GTCGAGGCTGGCTTGCCGCCGGTACGCTAG 27 11 1 GCTTGCCGCC 0.592996 -86 CGATTTGTCGGCTTGTCGCGGCCGCGGTCA 27 54 0 GCTTGTCGCG 0.605741 -43 CGACGGCGGCGTAAGCCGCGAATAGTGCTG 28 110 1 GTAAGCCGCG 0.939628 -191 TGGCCGTTGGGCACGCCGGACTCGCGGCAC 28 174 1 GCACGCCGGA 0.652207 -127 CAACGGACACTCGATCCGCGCCGTCAGGCT 28 248 0 TCGATCCGCG 0.528629 -53 GTGGTACCCATCGCGCCGCGCTGCGGTGCG 29 40 1 TCGCGCCGCG 0.96869 -163 CGGCTCCTCCTCACGCCGCTGCGCGGCGTG 29 98 1 TCACGCCGCT 0.79027 -105 CGGCGACGATGCACGCCGCGCAGCGGCGTG 29 109 0 GCACGCCGCG 0.996465 -94 CGGCTCCTCCTCACGCCGCTGCGCGGCGTG 29 156 1 TCACGCCGCT 0.79027 -47 CGGCGACGATGCACGCCGCGCAGCGGCGTG 29 167 0 GCACGCCGCG 0.996465 -36 GCGGACCCGCGCTTGCCGCGCAGCCGGCGA 32 44 1 GCTTGCCGCG 0.974482 -239 TTGCCGGCCAGCAAGCCGGGGCTTGACGCT 32 124 1 GCAAGCCGGG 0.90922 -159 CAGATTACTAGCAGCCCGCGCGGGCCCCTA 32 251 0 GCAGCCCGCG 0.82012 -32 ********** Masking position 8 Map Score: 44.7916 Number of sites scoring better than the average of aligned sites = 13765 Number in coding regions = 12651 Number in noncoding regions = 1114 Number of orfs with sites within 600 bp upstream = 676 Fraction of orfs with sites within 600 bp upstream = 0.108577 Motif number 6 CAGCCGGTCGCCAGGTGTGATCACAGCGTCATA 4 64 0 CCGGTGTGTA 0.732937 -150 CACCTGGCGACCGGCTGTGTGACAGTGTTCGCT 4 80 1 CCGCTGTGGC 0.980679 -134 CGGCTCGGTTCCGGGTGCCGACCGGTAATCGTT 7 12 0 CCGGTGCCAC 0.887057 -26 TTCCGGATCACCTGGTGTCTGGCTCACTTTGCG 9 79 0 CCGGTGTCGC 0.996304 -222 GTTGCCGGGGCCAGGTGTGAGAATTCTCGT 10 67 1 CCGGTGTGGA 0.962908 -20 CGAGGATGGGCCAGGTGTCTTCCCCGAACTGTA 11 208 1 CCGGTGTCTC 0.966097 -93 GCCGCATCCACCCGGTGTGGCACAGCTCACCGA 15 173 0 CCGGTGTGCC 0.928127 -128 GGCGCGATGGCCTGGTGTGCGACGGGTCGTGGC 17 52 0 CCGGTGTGGC 0.995221 -49 GGGTTGGACCCCAGATGTCCGTCCGGTGCCGGT 18 102 1 CCGATGTCGC 0.976427 -69 TTGCGCGGCGCCTGCTGGCAGTCGGTGAACGGT 19 70 0 CCGCTGGCGC 0.962891 -123 TACGGGTTGCCCTGGTGCATGCCGTGACGCCCG 20 52 0 CCGGTGCAGC 0.919529 -145 GTGTCGACGGCGTGGTGTCAGCCTAGCAGTACG 21 97 0 CGGGTGTCGC 0.983293 -61 AACAGCAAGTCCCGGTGGGCGGAGGTGCG 23 7 0 CCGGTGGGGA 0.911131 -257 ATGTCCCCGCCGAGGTGTCGGCAACGGCCGCCG 23 84 1 CGGGTGTCGA 0.880053 -180 TCGCCGCGCCCTGGATGTGTGTCGCTCCGGGCG 23 128 1 CTGATGTGGC 0.702468 -136 GGTGCGGAACCCAGGTGGATGTCGAAACCTATC 23 170 0 CCGGTGGAGC 0.919529 -94 GGGTTCCGCACCCGGTGCGCGACCGTGTGATAG 23 191 1 CCGGTGCGGC 0.987987 -73 TACCATTGCCCCCGCGGTGCGTCTAGGGACC 24 9 0 CCGCGGTGGC 0.808717 -74 CTGGTGCCTACCGCATGTCTGACTCGCGTTAAC 25 82 0 CCCATGTCGC 0.796409 -34 GCGGTAGGTGCCGCGAGTCCGGCGTGCCCAACG 28 178 0 CCCGAGTCGC 0.588576 -123 CTACCGCTTGCCCGGTGTCGGCCGGCAGGACCC 28 204 1 CCGGTGTCGC 0.996304 -97 CGCCGTCAGGCTGGATGTCTTTCGGGTCCTGCC 28 227 0 CTGATGTCTC 0.244187 -74 CCAGGTTGCCCGCGGTGTCGAACAGTCCGATCG 30 79 0 CGGGTGTCAC 0.812811 -158 ATACAGGGTCCGAGGTGGCCGCCGCCCGCGCGA 30 199 0 CGGGTGGCGC 0.958752 -38 GTAGCCATCGCCGGCTGCGCGGCAAGCGCGGGT 32 48 0 CCGCTGCGGC 0.952486 -235 ** ****** * * Masking position 7 Map Score: 50.4972 Number of sites scoring better than the average of aligned sites = 2851 Number in coding regions = 2662 Number in noncoding regions = 189 Number of orfs with sites within 600 bp upstream = 185 Fraction of orfs with sites within 600 bp upstream = 0.0297141 Motif number 7 CTAATGTGATCCTCTTCGCGTGTTATCTC 2 61 0 GTGATCTCGC 0.924806 -19 TGGGCTGGCGGTGTTACAGATCACAGTACGCTCC 3 110 0 GTGTTGTCAC 0.687644 -35 GACCGGCTGTGTGACAGTGTTCGCTTCCGGTGAA 4 88 1 GTGACGTCGC 0.988745 -126 TCAAAATCATGTAATACAGCTCACACTACCGCCG 5 28 0 GTAATGTCAC 0.808441 -40 CCATGACCGCGGAAGGGGGATCACGGTCTACGAC 6 21 0 GGAAGGTCAC 0.790334 -39 CGATTCTCGCGGCACGCTCATCGCCGGCACCGTG 10 11 1 GGCACCTCGC 0.892197 -76 TCTTTGGGCGGTAATGAACATCGCTGCGAGAGGC 11 168 1 GTAATCTCGC 0.749438 -133 GGGTCGTGACGTGAGAGGGCTCGCTTATGCCGGC 12 200 1 GTGAGGTCGC 0.96993 -29 GGCTGTGATTGTGAGTTGGATCACGTTTCGGCTG 15 129 1 GTGAGGTCAC 0.59631 -172 TCCACCCGGTGTGGCACAGCTCACCGATATGTTT 15 166 0 GTGGCGTCAC 0.912581 -135 GACAGCTGAGGGATCCGGTTCGTCGACGGCCGC 17 10 1 GGGATGTCGT 0.677597 -91 GCCTTTATGGGGCAGACCGTTCACCGACTGCCAG 19 55 1 GGCAGGTCAC 0.857764 -138 GTGGCATTGGGTCACGGGCGTCACGGCATGCACC 20 38 1 GTCACCTCAC 0.71473 -159 TTAGCCTGAGGGGACGCCATTCGCAGGAGAGAAG 20 173 1 GGGACATCGC 0.840902 -24 TCAACTCCCAGGGATTTGGTTCGCCCGCCGACGG 21 133 0 GGGATGTCGC 0.979371 -25 GTGCTGGCACGTGACCTAGATCACATTCAGACTA 22 18 0 GTGACGTCAC 0.503605 -283 CGGAGGAGGCGGGACTATGGTCGCGACCACTACG 22 52 1 GGGACGTCGC 0.986074 -249 GGGCACATGGTTGACGGCGATCACCACATCGAGC 22 113 1 TTGACGTCAC 0.630809 -188 GGGGGCTCGGGTGGTACCCATCGCGCCGCGCTGC 29 30 1 GTGGTCTCGC 0.811446 -173 ***** * **** Masking position 11 Map Score: 19.9681 Number of sites scoring better than the average of aligned sites = 1892 Number in coding regions = 1762 Number in noncoding regions = 130 Number of orfs with sites within 600 bp upstream = 127 Fraction of orfs with sites within 600 bp upstream = 0.0203983 Motif number 8 CTTTTCGCACGGCGTGTCGAGAGCTTTTGC 9 195 1 GGCGTGTCGA 0.983793 -106 TGCGATCCGCGGCGGGTCTATGGTGCCATT 12 127 1 GGCGGGTCTA 0.901943 -102 GAAGCGAGGGGTCGTGACGTGAGAGGGCTC 12 192 1 GTCGTGACGT 0.793948 -37 ACCCATAGCAGTCGAGAGGAACACCCGCAG 13 53 1 GTCGAGAGGA 0.417794 -24 ACCCCGGGCAGGCGGGTCATCCCGATAGCG 14 90 1 GGCGGGTCAT 0.712087 -83 ATCACGTTTCGGCTGGACAAACATATCGGT 15 148 1 GGCTGGACAA 0.648154 -153 CCTGGTGTGCGACGGGTCGTGGCTGGCCAC 17 45 0 GACGGGTCGT 0.623108 -56 CAAAACGAATGGCTGGTCGAAGAG 19 179 1 GGCTGGTCGA 0.94494 -14 CCAGTAGCACGTCGGCAGGAAGGATGCG 21 9 0 GTCGGCAGGA 0.320807 -149 CCGCCGACGGGCCGTGTCGACGGCGTGGTG 21 113 0 GCCGTGTCGA 0.865869 -45 CACCGGAGGAGGCGGGACTATGGTCGCGAC 22 49 1 GGCGGGACTA 0.901943 -252 ACACCTTGCCGTCGTGTCGAATCGTGCGTA 22 237 0 GTCGTGTCGA 0.934768 -64 ACACATCCAGGGCGCGGCGAGTTGGTGGCC 23 118 0 GGCGCGGCGA 0.768181 -146 TCGATTTGTCGGCTTGTCGCGGCCGCGGTC 27 55 0 GGCTTGTCGC 0.77919 -42 GCCGCGCAGCGGCGTGAGGAGGAGCCGAGC 29 95 0 GGCGTGAGGA 0.950698 -108 GCCGCGCAGCGGCGTGAGGAGGAGCCGAGC 29 153 0 GGCGTGAGGA 0.950698 -50 AGCAAGCCGGGGCTTGACGCTGGCGCTCAT 32 133 1 GGCTTGACGC 0.77919 -150 ********** Masking position 1 Map Score: 9.81701 Number of sites scoring better than the average of aligned sites = 4351 Number in coding regions = 3901 Number in noncoding regions = 450 Number of orfs with sites within 600 bp upstream = 366 Fraction of orfs with sites within 600 bp upstream = 0.0587857 Motif number 9 GGTGCTCCCTGGGCTGGCGGTGTTACAGATCA 3 121 0 GGGCTGGCTG 0.893885 -24 GGTGAACGCCGAGGTGGAACTTAAGCGTGGTC 4 116 1 GAGGTGGATT 0.903109 -98 GCTTCGTTGTGAGTTAGCTGTGTCCGGCGCGT 4 178 0 GAGTTAGCTG 0.90311 -36 CGTCCTCTTGGGGTTGGCGTTGAGCAGTATTG 9 42 0 GGGTTGGCTG 0.96476 -259 TGTGTGCCGCGAGGTGGGTGTGTCGGTGTGAC 9 135 0 GAGGTGGGTG 0.945155 -166 ACATATCTGCGCGGTGGACTTGGTACTTCTAC 12 77 1 GCGGTGGATG 0.984821 -152 ACCTCCGATCGCGGTGGATCTGATCGGGCGGT 18 15 1 GCGGTGGATG 0.984821 -156 CGCTGGCAAAGCGTTAGCCTTTATGGGGCAGA 19 39 1 GCGTTAGCTT 0.642467 -154 TGGCTTGCTAGCGGTGGCATTGGGTCACGGGC 20 25 1 GCGGTGGCTG 0.992774 -172 TGGATCCGTCGTGGTAGAAATGCCGGATTTCG 22 199 0 GTGGTAGATG 0.625521 -102 TGATAGGCCAGAGGTGGACCTGCGCCGACCGA 23 218 1 GAGGTGGATG 0.982456 -46 TAGACGCACCGCGGGGGCAATGGTATTCTCAC 24 17 1 GCGGGGGCTG 0.949087 -66 CGATATTACCGAGTTGGATATGCCACCTAATC 28 44 1 GAGTTGGATG 0.963567 -257 TCACCACGTAGAGTTGGCCGTTGGGCACGCCG 28 160 1 GAGTTGGCTT 0.90311 -141 GTTGTGCTTTGAGTTGGCACTGAGTAGCTGCC 32 186 0 GAGTTGGCTG 0.982458 -97 ******** ** Masking position 11 Map Score: 22.0417 Number of sites scoring better than the average of aligned sites = 2325 Number in coding regions = 2205 Number in noncoding regions = 120 Number of orfs with sites within 600 bp upstream = 109 Fraction of orfs with sites within 600 bp upstream = 0.0175072 Motif number 10 GGCCTATCGCCCACCAGACGCAAAAGCTCTC 9 213 0 CACCAGACGC 0.880713 -88 AGCGTCAGCGCTACCCGAAGCGCTACCGATT 11 57 0 CACCCGAAGC 0.992953 -244 TCGAAACAGGCCTCTCGCAGCGATGTTCATT 11 180 0 CTCTCGCAGC 0.86013 -121 ACCTTCGCGGCGCCGCGAAGCCAATAAGCAC 11 243 0 CCCGCGAAGC 0.786899 -58 TCAATAACAACGTCGCGAAGCGAGGGGTCGT 12 176 1 CTCGCGAAGC 0.891269 -53 ATTGACCGCGCCACCCATAGCAGTCGAGAGG 13 41 1 CACCCATAGC 0.856671 -36 GTCGAGAGGAACACCCGCAGCAAA 13 63 1 AACCCGCAGC 0.758436 -14 TGGCCAGCCACGACCCGTCGCACACCAGGCC 17 46 1 CACCCGTCGC 0.9788 -55 CGGTCCGGGGCTTCCCGGCGCGATGGCCTGG 17 70 0 CTCCCGGCGC 0.845357 -31 GCGCTAGTTTCAACCCGAAGCCAAGTCCGTA 18 135 1 CACCCGAAGC 0.992953 -36 TGCACCAGGGCAACCCGTATCGTCACCAATG 20 66 1 CACCCGTATC 0.772185 -131 GCGCGGTTCACCGCTCGAAGCGGAATAATGC 20 105 0 CGCTCGAAGC 0.845858 -92 CCACTACGCACTTCCCGAAGCAAAAAGCGCC 22 78 1 CTCCCGAAGC 0.978553 -223 CTTGCTGTTGCAACCAGTCGCCCAAACCGTA 23 31 1 CACCAGTCGC 0.791779 -233 ACCAGTCGCCCAAACCGTAGCAAGGACGGCC 23 43 1 CAACCGTAGC 0.762086 -221 CCGGGGCCACCAACTCGCCGCGCCCTGGATG 23 114 1 CACTCGCCGC 0.923559 -150 GCGATGGGTACCACCCGAGCCCCCGCCGTCT 29 23 0 CACCCGAGCC 0.587266 -180 CGCTCATGACCGACTCGAAGCCTAGCGCATG 32 156 1 CACTCGAAGC 0.974106 -127 TACTCAGTGCCAACTCAAAGCACAACTCCGG 32 192 1 CACTCAAAGC 0.755998 -91 * ********* Masking position 11 Map Score: 24.5029 Number of sites scoring better than the average of aligned sites = 2148 Number in coding regions = 1974 Number in noncoding regions = 174 Number of orfs with sites within 600 bp upstream = 151 Fraction of orfs with sites within 600 bp upstream = 0.0242531 Motif number 11 CGCTTAAGTTCCACCTCGGCGTTCACCGGA 4 113 0 CCACCTCGGC 0.922499 -101 GCCGGCCGGTCCTTCTCACCTAGTGCCGGC 9 13 1 CCTTCTCACC 0.649803 -288 ACCGACACACCCACCTCGCGGCACACACAA 9 140 1 CCACCTCGCG 0.930344 -161 GACCGACAGCCCACCGCAGCGTCAGCGCTA 11 75 0 CCACCGCAGC 0.830264 -226 CATAAGCGAGCCCTCTCACGTCACGACCCC 12 199 0 CCCTCTCACG 0.847502 -30 TGGGGTCCAACCCCCACAGCTACGACTGAC 18 85 0 CCCCCACAGC 0.930301 -86 GCGAATGGCGTCCCCTCAGGCTAATGCCGG 20 167 0 TCCCCTCAGG 0.770307 -30 CTTCGGCGCGCACCCACACGGCAACAAAGC 21 59 1 CACCCACACG 0.441854 -99 CATAGTCCCGCCTCCTCCGGTGCTGGCACG 22 41 0 CCTCCTCCGG 0.849549 -260 CGGCGCAGGTCCACCTCTGGCCTATCACAC 23 215 0 CCACCTCTGG 0.948319 -49 CTGCTCGGCTCCTCCTCACGCCGCTGCGCG 29 93 1 CCTCCTCACG 0.959629 -110 CTGCTCGGCTCCTCCTCACGCCGCTGCGCG 29 151 1 CCTCCTCACG 0.959629 -52 CATGATCACGCCACCTCTCCCCCGCAAGCG 31 28 1 CCACCTCTCC 0.926495 -101 GGCGGTACCCCCACCTCATCGCTGCGGCCC 31 58 1 CCACCTCATC 0.752501 -71 GCTGGGGGTGCCCCCACTGCATCGTCGGCG 31 103 1 CCCCCACTGC 0.860706 -26 GAGCTTTCCCCGTCTGGTCAGGGGCCC 32 8 1 CCCCGTCTGG 0.697066 -275 ********** Masking position 7 Map Score: 13.2072 Number of sites scoring better than the average of aligned sites = 1575 Number in coding regions = 1376 Number in noncoding regions = 199 Number of orfs with sites within 600 bp upstream = 176 Fraction of orfs with sites within 600 bp upstream = 0.0282686 Motif number 12 GGTATAGCGGGCCGGCAACGCGCCGGACACAG 4 161 1 GCGGAACGCG 0.936409 -53 GGTGAGCCGTGCCGGCCTATCGCCCACCAGAC 9 225 0 GCGGCTATCG 0.980487 -76 GCGACGCTACGCGCGCCTAGCGCCGGTGAGCC 9 249 0 GCCGCTAGCG 0.934107 -52 GGCCGACTGCGCTGGGATACCGACAGCGGTGG 12 39 0 GCGGATACCG 0.866783 -190 GCGATCCGCGGCGGGTCTATGGTGCCATTTAT 12 128 1 GCGGCTATGG 0.94527 -101 CTGGCGAATCGCTGGCAAAGCGTTAGCCTTTA 19 30 1 GCGGAAAGCG 0.983326 -163 CGGCAACAAAGCAGGACAAGCGTACTGCTAGG 21 77 1 GCGGCAAGCG 0.991801 -81 ACCGGAGGAGGCGGGACTATGGTCGCGACCAC 22 50 1 GCGGCTATGG 0.94527 -251 AAAGCGCCCTGCGGGCACATGGTTGACGGCGA 22 101 1 GCGGACATGG 0.826633 -200 CGACACCTCGGCGGGGACATCGGTGCAGTCGG 23 72 0 GCGGACATCG 0.932759 -192 GCCGCGACAAGCCGACAAATCGAGCACGTGAG 27 62 1 GCGAAAATCG 0.630349 -35 CGTTGGGCACGCCGGACTCGCGGCACCTACCG 28 178 1 GCGGCTCGCG 0.958221 -123 GCCGGCCGACACCGGGCAAGCGGTAGGTGCCG 28 198 0 ACGGCAAGCG 0.864754 -103 AACAGCTAGAGCCGGGCAATCGAGCTTAACTT 30 114 0 GCGGCAATCG 0.985113 -123 ATCGCCGGCTGCGCGGCAAGCGCGGGTCCGCC 32 43 0 GCCGCAAGCG 0.949159 -240 GCCCCTAGCGGCCGGTAAAGGGCCAGTTGAGA 32 226 0 GCGGAAAGGG 0.952987 -57 ** ** ****** Masking position 2 Map Score: 29.8517 Number of sites scoring better than the average of aligned sites = 1523 Number in coding regions = 1420 Number in noncoding regions = 103 Number of orfs with sites within 600 bp upstream = 108 Fraction of orfs with sites within 600 bp upstream = 0.0173466 Motif number 13 GCGCTGGTCAGCTGCCATGACCGCGGAAGGG 6 38 0 GCGCCATGAC 0.947983 -22 CGACGAGCACTCGACCATTAGGGTAGGGGCC 8 43 1 TCACCATTAG 0.232797 -21 GAGCAGTATTGCCGGCACTAGGTGAGAAGGA 9 22 0 GCGGCACTAG 0.748468 -279 TGGGCGATAGGCCGGCACGGCTCACCGGCGC 9 231 1 GCGGCACGGC 0.725862 -70 CATCCCGCGGGCCGCCGCGAGCGCCCACCGT 11 119 1 GCGCCGCGAG 0.974795 -182 TCTGACCACTGCTATCACGTCATCGCAACAC 11 272 0 GCATCACGTC 0.537894 -29 CCACCGCCGGCATAAGCGAGCCCTCT 12 213 0 GCGGCATAAG 0.296508 -16 GGCACCATGGGCGGCCGCGCGTAAGGTAAGC 14 50 0 GCGCCGCGCG 0.949924 -123 GCCGCGGTGGCCAGCCACGACCCGTCGCACA 17 39 1 CCGCCACGAC 0.718965 -62 CGCACACCAGGCCATCGCGCCGGGAAGCCCC 17 64 1 GCATCGCGCC 0.57323 -37 GTGACCCAATGCCACCGCTAGCAAGCCAAAC 20 22 0 GCACCGCTAG 0.617393 -175 CTCCTCCGGTGCTGGCACGTGACCTAGATCA 22 29 0 GCGGCACGTG 0.908534 -272 GACTATGGTCGCGACCACTACGCACTTCCCG 22 64 1 GCACCACTAC 0.619416 -237 GTGATCGCCGTCAACCATGTGCCCGCAGGGC 22 106 0 TCACCATGTG 0.503203 -195 GATCACCACATCGAGCGCGACGACGAAGGCC 22 131 1 TCAGCGCGAC 0.729507 -170 TTTTCCTGCGGCTGCCGCGAAATCCGGCATT 22 182 1 GCGCCGCGAA 0.672093 -119 ATCCGGCATTTCTACCACGACGGATCCATGC 22 203 1 TCACCACGAC 0.838121 -98 TCAACACCTTGCCGTCGTGTCGAATCGTGCG 22 239 0 GCGTCGTGTC 0.550426 -62 CACCCGGTGCGCGACCGTGTGATAGGCCAGA 23 199 1 GCACCGTGTG 0.715134 -65 AACCGAAGTGTCCAGCATGAGTCGTGTACGG 25 19 0 TCAGCATGAG 0.627017 -97 TCGCCTGACCGCGGCCGCGACAAGCCGACAA 27 49 1 GCGCCGCGAC 0.971151 -48 AGCCGACAAATCGAGCACGTGAGGATCAGCG 27 71 1 TCAGCACGTG 0.568031 -26 GTGCCGCGAGTCCGGCGTGCCCAACGGCCAA 28 173 0 TCGGCGTGCC 0.617352 -128 CCCGGTGTCGGCCGGCAGGACCCGAAAGACA 28 214 1 GCGGCAGGAC 0.634922 -87 CCTACAAAACTCTGTCACGCGCAGCAACGGA 28 271 0 TCGTCACGCG 0.621196 -30 CGAGGGGGCCGCAGCGATGAGGTGGGGGTAC 31 62 0 GCGCGATGAG 0.469777 -67 CAAGCGCGGGTCCGCCATGACGGGCCCCTGA 32 28 0 TCGCCATGAC 0.863595 -255 AGGCTTCGAGTCGGTCATGAGCGCCAGCGTC 32 148 0 TCGTCATGAG 0.609712 -135 GCACTGAGTAGCTGCCATGCGCTAGGCTTCG 32 171 0 GCGCCATGCG 0.91125 -112 ** ******** Masking position 2 Map Score: 21.4524 Number of sites scoring better than the average of aligned sites = 17893 Number in coding regions = 16554 Number in noncoding regions = 1339 Number of orfs with sites within 600 bp upstream = 819 Fraction of orfs with sites within 600 bp upstream = 0.131545 Motif number 14 TGGGTGCTCCCTGGGCTGGCGGT 3 132 0 GTGCTCCCTG 0.953367 -13 CTAGGCAGGAGTGCTCCAGGAATCGGTAGC 11 37 1 GTGCTCCAGG 0.986298 -264 TGATCGGGCGGTGCTCCAGGTTACGCGTCC 18 35 1 GTGCTCCAGG 0.986298 -136 TCCTGCCGACGTGCTACTGGCACGTTACGC 21 19 1 GTGCTACTGG 0.9176 -139 GCGTGATCATGTGCTCCTTCCGGGCCTT 31 9 0 GTGCTCCTTC 0.847956 -120 CCGCGGTGGGGTGCCCCGGGTGATGACCAG 32 86 0 GTGCCCCGGG 0.956752 -197 ********** Masking position 2 Map Score: 1.8277 Number of sites scoring better than the average of aligned sites = 140 Number in coding regions = 119 Number in noncoding regions = 21 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548 Motif number 15 ATACGGCATGATCCGGCCGGGCCGATGGGTCC 3 17 1 ATCCGCCGGC 0.697679 -128 CAAGAACCTGAGTCGACCACGCTTAAGTTCCA 4 130 0 AGTCGCCAGC 0.951501 -84 AGCGCCGGTGAGCCGTGCCGGCCTATCGCCCA 9 231 0 AGCCGGCCGC 0.840054 -70 GTTCTATAGTCGACGCATCTCGCGTTCTA 11 8 1 AGTCGCGCTC 0.376016 -293 CCGCCGCGAGCGCCCACCGTGCAGCGCCGAAG 11 130 1 CGCCCCCGGC 0.879718 -171 TAGTTGCTCCAGTCCGCCCACCGCTGTCGGTA 12 22 1 AGTCCCCCCC 0.892421 -207 ATCCCAGCGCAGTCGGCCGTGCACACATATCT 12 53 1 AGTCGCCGGC 0.991181 -176 AGAAGTACCAAGTCCACCGCGCAGATATGTGT 12 75 0 AGTCCCCGGC 0.988884 -154 CGTCGGTGGGAATTGACCGCGCCACCCATAGC 13 30 1 AATTGCCGGC 0.547401 -47 CTGGCACCATGGGCGGCCGCGCGTAAGGTAAG 14 51 0 GGGCGCCGGC 0.705906 -122 GACATTTCAGATTTGTCCCAGCACCGTATCGC 15 15 0 ATTTGCCCGC 0.502362 -286 GTCTCGATACAGTTCTCCGTGCGAGTCGCCGA 15 223 1 AGTTCCCGGC 0.963449 -78 TTGGTCGAGCAGTAAGCCGAGCGAAGACGGTG 15 274 1 AGTAACCGGC 0.229674 -27 CGCGCGTTGCCCGGTCTCTCTGGCGA 19 5 1 CGTTGCCGTC 0.671611 -188 TGCTAGTTGAAGTCCTGCAAGCGCATTGCGCG 19 96 0 AGTCCGCAGC 0.825884 -97 GGCCAACATAAGTTCACCATTCGGGCAAAACG 19 154 1 AGTTCCCATC 0.522676 -39 GTAGCGGCGCGGTTCACCGCTCGAAGCGGAAT 20 110 0 GGTTCCCGTC 0.617386 -87 CGCTGCTCGCACTTCGGCGCGCACCCACACGG 21 48 1 ACTTCGCGGC 0.30235 -110 TCGCGACCATAGTCCCGCCTCCTCCGGTGCTG 22 46 0 AGTCCGCCCC 0.717818 -255 TGTTGCAACCAGTCGCCCAAACCGTAGCAAGG 23 36 1 AGTCGCCAAC 0.493026 -228 ACATCGGTGCAGTCGGCCGTCCTTGCTACGGT 23 56 0 AGTCGCCGCC 0.956352 -208 CACCACGTAGAGTTGGCCGTTGGGCACGCCGG 28 161 1 AGTTGCCGTG 0.273891 -140 AGGTGCCGCGAGTCCGGCGTGCCCAACGGCCA 28 174 0 AGTCCGCGGC 0.964632 -127 ATGTCTTTCGGGTCCTGCCGGCCGACACCGGG 28 214 0 GGTCCGCCGC 0.7679 -87 GGCTTTTCTTAGTCGGCCCATCGACGAGCGGG 30 19 0 AGTCGCCCTC 0.927289 -218 CCGAGGTGGCCGCCGCCCGCGCGAGACGGTTG 30 191 0 CGCCGCCGGC 0.902309 -46 ***** *** ** Masking position 8 Map Score: 21.0725 Number of sites scoring better than the average of aligned sites = 7853 Number in coding regions = 7322 Number in noncoding regions = 531 Number of orfs with sites within 600 bp upstream = 448 Fraction of orfs with sites within 600 bp upstream = 0.0719563