AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00030_mtub_reg_100.orf -o00030_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 fba 95 fba #2 Rv0476 111 hypothetical protein Rv0476 #3 pgi 300 pgi #4 prsA 91 prsA #5 glmU 254 glmU #6 zwf 202 zwf #7 gnd2 21 gnd2 #8 fmt 196 fmt #9 rpe 24 rpe #10 opcA 52 opcA #11 tkt 300 tkt #12 gnd 29 gnd #13 Rv1846c 277 hypothetical protein Rv1846c #14 hspX 196 hspX #15 rbsK 300 rbsK #16 rpi 101 rpi #17 pfkA 95 pfkA #18 gatC 84 gatC #19 pgmA 69 pgmA Motif number 1 TATCGCAACACCGCAACCGAGCTTGTCGGC 1 42 0 CCGCAACCGA 0.741829 -54 GATGGTGATTCGGAGCCCGA 2 1 0 CGGAGCCCGA 0.90695 -111 CCGAGTCGCCCCGTGGGCGACTCGGAGTCG 2 30 0 CCGTGGGCGA 0.672239 -82 GTACCAAGCGGCGCAACGGCGGTTCAACTT 3 33 1 GCGCAACGGC 0.816746 -268 CTGCAATGGCGCACGCCAGTACGCCCAGGT 3 82 0 GCACGCCAGT 0.703945 -219 AGCGGGTGCTGGGCGACGGTCAGCGGCCTC 3 131 1 GGGCGACGGT 0.891678 -170 TCAGCGGCCTCGGCGGGGGCCGAGGCCGCG 3 150 1 CGGCGGGGGC 0.983103 -151 GGGGCCGAGGCCGCGAGAGCGCAGGCCCGC 3 165 1 CCGCGAGAGC 0.635584 -136 CCGCGAGAGCGCAGGCCCGCATCGCCGAGC 3 175 1 GCAGGCCCGC 0.722414 -126 TAGTTATCGTGCTCGGCGGCACTCGCCGTT 3 222 0 GCTCGGCGGC 0.964589 -79 TTTGTCGCCGGGTAGCCGGGATGCGACT 4 9 0 GGTAGCCGGG 0.755441 -83 CGATCCCAAACGGCGAGGGCAGCGCG 4 76 1 CGGCGAGGGC 0.93918 -16 CGCGGGTGACGCGCGCCAGG 5 1 0 GCGCGCCAGG 0.514311 -254 CCGGAAAACCCGACGCGGGTGACGCGCGCC 5 14 0 CGACGCGGGT 0.885428 -241 GGGCCGGATAAGGCGCCGGAAAACCCGACG 5 29 0 AGGCGCCGGA 0.799529 -226 GTTGATGTGGCCGGACCGGATAAAGGGCCG 5 53 0 CCGGACCGGA 0.856236 -202 GGTGGGTAGACGGCGACAGCGTTGACTGTG 5 107 1 CGGCGACAGC 0.896126 -148 GCCGATTACACCACGACGGATTGCACATCG 5 168 0 CCACGACGGA 0.807285 -87 CTTGAAGCTCCGTCGCCAGGACTCGAACCT 5 227 0 CGTCGCCAGG 0.920794 -28 GGGAGCGGCTCGACGCCCGCA 6 2 0 CGACGCCCGC 0.988332 -201 GGGCGTCGAGCCGCTCCCGCGGTTGCTCGG 6 14 1 CCGCTCCCGC 0.534815 -189 GGCGTATCCGCCTCAGCCGGATGCGCATCG 6 50 1 CCTCAGCCGG 0.876162 -153 TCGCCACGATCGAGGCCGGCGGACTCGTCC 6 80 0 CGAGGCCGGC 0.963138 -123 CGGTCTACATCCTGGCCGGGATCGCCACGA 6 101 0 CCTGGCCGGG 0.888502 -102 ACTTGCTTTCCCGCGGCGGCCGAACTCAAC 6 169 0 CCGCGGCGGC 0.995108 -34 CAGGCTCCCGCCGTGCCCGCGACAACGATG 8 52 0 CCGTGCCCGC 0.832646 -145 ACGGCGGGAGCCTGGGCAGTAGCGTGCCTT 8 68 1 CCTGGGCAGT 0.464898 -129 GCCACAATTCCGACACGCGCGATAGTTAGA 8 141 0 CGACACGCGC 0.797321 -56 GCCCACGCCACGTCGGCGGCGCTTCTTAGA 8 169 1 CGTCGGCGGC 0.980102 -28 GGTTCGCCGCAGCGGCTCAGTAAT 9 7 1 CCGCAGCGGC 0.970953 -18 TGATCCGCGCCGGCGACGATGCAG 10 5 1 CCGCGCCGGC 0.925499 -48 CGGCATCATCGGTTGGCCGGCG 11 3 0 GGTTGGCCGG 0.674835 -298 GGTGCGGGTCGGGCGGCCGGCTTAATCGCG 11 59 0 GGGCGGCCGG 0.987845 -242 AGCCCCAGCAGCAGAGCCGCAGGGTCGATG 11 118 1 GCAGAGCCGC 0.556625 -183 AGCGTGGGTAGCGCGCGGGTTACGTTTCAC 11 183 1 GCGCGCGGGT 0.927621 -118 TTACGTTTCACAGGGCCCGGATGGGTACCC 11 202 1 CAGGGCCCGG 0.592572 -99 GGGCCCGGATGGGTACCCGGATATGCGGCA 11 214 1 GGGTACCCGG 0.700779 -87 CGAAGCCGGGCCCAACTGAA 12 1 1 CGAAGCCGGG 0.851174 -29 GGTGCACGGGGCTCGCCCGTTGGTGTAGAC 13 19 0 GCTCGCCCGT 0.802715 -259 GCCACAACGACCGCGGCCGAGTCCTGAGGG 13 93 0 CCGCGGCCGA 0.985472 -185 TGTAATGTTTGCGAGCCGGGTGCATAGGCC 13 173 1 GCGAGCCGGG 0.929281 -105 CGGCGGGCGGCCGTACCGGGCCTATGCACC 13 191 0 CCGTACCGGG 0.832173 -87 GTATCCAAACCGGCGGGCGGCCGTACCGGG 13 201 0 CGGCGGGCGG 0.979028 -77 GGCCATTTGTCCGCGCCCGTCGGTGATCCA 14 89 0 CCGCGCCCGT 0.652514 -108 CAGAAGTCCCCGAAGCGCGGGCCATTTGTC 14 108 0 CGAAGCGCGG 0.63582 -89 ACCAGCCCATCGTGGCCAGGGCTAGGGACA 14 136 0 CGTGGCCAGG 0.781617 -61 AGCCAGGATAGCTCGGCCGTATCGCAATGT 15 47 1 GCTCGGCCGT 0.897618 -254 ACACATGCCCCGGCACCGGCAACCGCTGCG 15 96 1 CGGCACCGGC 0.982327 -205 GTTGACCACTCCGCAGCGGTTGCCGGTGCC 15 107 0 CCGCAGCGGT 0.912608 -194 TGGTCGGGATGCTGGACCGGCTCGATGCTG 15 172 0 GCTGGACCGG 0.53775 -129 GCTTGCGGATCGGGACGGGTGGTCGGGATG 15 191 0 CGGGACGGGT 0.613969 -110 GTGTCCTGTCGGTGGCGCGTCCCAGTATTC 15 227 0 GGTGGCGCGT 0.569767 -74 ATAGTGAATTCGGCGCCGGAACACGCCCGG 16 17 1 CGGCGCCGGA 0.991242 -85 CGGCGCCGGAACACGCCCGGGTTCTTGTCG 16 27 1 ACACGCCCGG 0.685607 -75 AATTCACTATCGGCGGGCGCCCGCGCCGGC 16 60 1 CGGCGGGCGC 0.983114 -42 CGGCGGGCGCCCGCGCCGGCGCCCGGCAGT 16 70 1 CCGCGCCGGC 0.925499 -32 CACGGGCGAGGGGCGCCGGATGCGAGTCTG 17 24 0 GGGCGCCGGA 0.982718 -72 ACACAGAATCGCACGGGCGAGGGGCGCCGG 17 35 0 GCACGGGCGA 0.707642 -61 CGGCCGCCGACCTGGCGCGAGCAGACACAG 17 59 0 CCTGGCGCGA 0.627732 -37 CGCGCCAGGTCGGCGGCCGCGCGGCAAGAT 17 70 1 CGGCGGCCGC 0.99496 -26 GCCGGACGGCCGACGCCGGCTGCCGAAACG 18 44 0 CGACGCCGGC 0.988236 -41 AAAGCCTAATGGGTGGCCGGACGGCCGACG 18 59 0 GGGTGGCCGG 0.892778 -26 ********** Masking position 9 Map Score: 104.538 Number of sites scoring better than the average of aligned sites = 80894 Number in coding regions = 75796 Number in noncoding regions = 5098 Number of orfs with sites within 600 bp upstream = 1570 Fraction of orfs with sites within 600 bp upstream = 0.252168 Motif number 2 CCCAACATACCGGCCATCACGCACAGGCCG 1 16 1 CGGCCATCAC 0.760963 -80 AGCTCGGTTGCGGTGTTGCGATACTGGGTG 1 49 1 CGGTGTTGCG 0.570836 -47 GAAGTTGAACCGCCGTTGCGCCGCTTGGTA 3 34 0 CGCCGTTGCG 0.855774 -267 CGCTGACCGTCGCCCAGCACCCGCTGCAGA 3 126 0 CGCCCAGCAC 0.932556 -175 CCTCGGCCCCCGCCGAGGCCGCTGACCGTC 3 145 0 CGCCGAGGCC 0.884464 -156 CCTCGGCGGGGGCCGAGGCCGCGAGAGCGC 3 157 1 GGCCGAGGCC 0.833112 -144 AGGCCCGCATCGCCGAGCCTGTAGATACCG 3 187 1 CGCCGAGCCT 0.97191 -114 CGGCGAGTGCCGCCGAGCACGATAACTAAA 3 224 1 CGCCGAGCAC 0.976314 -77 CCGCTGTCTTCGCCGAGCCTTTAGTTATCG 3 243 0 CGCCGAGCCT 0.97191 -58 CGTGGAGTGGCGTCGATCAGAGCCGCTGTC 3 265 0 CGTCGATCAG 0.499001 -36 TGGTACGTAGCGCACCGCCCGGATTTGTCG 4 32 0 CGCACCGCCC 0.560188 -60 CGATCCCAAACGGCGAGGGCAGCGCG 4 76 1 CGGCGAGGGC 0.885882 -16 AACCCGACGCGGGTGACGCGCGCCAGG 5 8 0 GGGTGACGCG 0.505046 -247 GCCCTTTATCCGGTCCGGCCACATCAACAA 5 55 1 CGGTCCGGCC 0.903606 -200 GCACAGTCAACGCTGTCGCCGTCTACCCAC 5 108 0 CGCTGTCGCC 0.625354 -147 ACTGTGCTGACGGCGTTGACACCGTCTAAA 5 131 1 CGGCGTTGAC 0.797025 -124 TGCGGGCGTCGAGCCGCTCCCGCGGT 6 7 1 CGTCGAGCCG 0.919767 -196 ATGCGCATCCGGCTGAGGCGGATACGCCAG 6 48 0 GGCTGAGGCG 0.831479 -155 GGACTCGTCCCGATGCGCATCCGGCTGAGG 6 60 0 CGATGCGCAT 0.53196 -143 GTGGCGATCCCGGCCAGGATGTAGACCGCG 6 103 1 CGGCCAGGAT 0.84011 -100 CCCGACAACCCGACGCTGCAGATCGCGGTC 6 126 0 CGACGCTGCA 0.539672 -77 GGTTGAGTTCGGCCGCCGCGGGAAAGCAAG 6 168 1 GGCCGCCGCG 0.627772 -35 CCCAGGCTCCCGCCGTGCCCGCGACAACGA 8 54 0 CGCCGTGCCC 0.867144 -143 GAAGCGCCGCCGACGTGGCGTGGGCCACAA 8 164 0 CGACGTGGCG 0.900916 -33 ATTACTGAGCCGCTGCGGCGAACC 9 5 0 CGCTGCGGCG 0.717478 -20 GCATCGTCGCCGGCGCGGATCA 10 3 0 CGGCGCGGAT 0.949461 -50 CTCATCGCTTCGCTCTGCATCGTCGCCGGC 10 19 0 CGCTCTGCAT 0.253955 -34 CTGCGCCGCTCCTCCTCATCGCT 10 40 0 CGCCGCTCCT 0.894646 -13 GCCGGCCAACCGATGATGCCGGTGATCGCC 11 12 1 CGATGATGCC 0.632675 -289 ATCGGTTGGTCGGCGATCACCGGCATCATC 11 23 0 CGGCGATCAC 0.906436 -278 GCCGGCCGCCCGACCCGCACCACACTTCTG 11 68 1 CGACCCGCAC 0.851313 -233 TCACCGTCATCGACCCTGCGGCTCTGCTGC 11 125 0 CGACCCTGCG 0.702036 -176 GCTTCGCATTCGGTGCCGATATGCCGAAAA 11 156 0 CGGTGCCGAT 0.418979 -145 ACGTTTCACAGGGCCCGGATGGGTACCCGG 11 204 1 GGGCCCGGAT 0.67555 -97 TCCCGCACTAGGGTGAGGACTGATCATCTT 11 260 1 GGGTGAGGAC 0.750782 -41 CCTTTCAGTTGGGCCCGGCTTCG 12 4 0 GGGCCCGGCT 0.840387 -26 CTACACCAACGGGCGAGCCCCGTGCACCAA 13 21 1 GGGCGAGCCC 0.834898 -257 TCGACTCGATCGGCGAGCCCCGTGCCTTGG 13 47 0 CGGCGAGCCC 0.886183 -231 CAACGACCGCGGCCGAGTCCTGAGGGCTGC 13 89 0 GGCCGAGTCC 0.486368 -189 ATCATTACTTCGTCGAGCCACAACGACCGC 13 109 0 CGTCGAGCCA 0.659786 -169 GTCTGCCAACCGCCGTTCAGAAAGATCGGG 14 37 0 CGCCGTTCAG 0.699905 -160 CCGCGCCCGTCGGTGATCCACTTGGGGACC 14 79 0 CGGTGATCCA 0.348776 -118 GATCACCGACGGGCGCGGACAAATGGCCCG 14 91 1 GGGCGCGGAC 0.841906 -106 GCCTTTGATCCGACCAGCCCATCGTGGCCA 14 148 0 CGACCAGCCC 0.925494 -49 CACCGGCAACCGCTGCGGAGTGGTCAACGC 15 109 1 CGCTGCGGAG 0.874385 -192 GCATCGAGCCGGTCCAGCATCCCGACCACC 15 174 1 GGTCCAGCAT 0.198056 -127 TCCAGCATCCCGACCACCCGTCCCGATCCG 15 186 1 CGACCACCCG 0.61658 -115 TCGAATACTGGGACGCGCCACCGACAGGAC 15 225 1 GGACGCGCCA 0.610046 -76 TGCCGGGCGCCGGCGCGGGCGCCCGCCGAT 16 68 0 CGGCGCGGGC 0.662152 -34 CGGCGAGCAGACACAGACTC 17 1 1 CGGCGAGCAG 0.965943 -95 GACTCGCATCCGGCGCCCCTCGCCCGTGCG 17 26 1 CGGCGCCCCT 0.899268 -70 GCGCGGCCGCCGACCTGGCGCGAGCAGACA 17 62 0 CGACCTGGCG 0.771142 -34 CCTCATCTTGCCGCGCGGCCGCCGACCTGG 17 74 0 CCGCGCGGCC 0.493461 -22 GCTGCCGAAACGCCGTGGATACATCGTTGT 18 26 0 CGCCGTGGAT 0.851901 -59 GTGGCCGGACGGCCGACGCCGGCTGCCGAA 18 47 0 GGCCGACGCC 0.881714 -38 TGGTCGATCCCTCTCGGTGTG 19 2 1 GGTCGATCCC 0.561359 -68 CCCTACAGTGCGAAGCGCAGCATTAGCACA 19 28 0 CGAAGCGCAG 0.28077 -42 ********** Masking position 2 Map Score: 75.2165 Number of sites scoring better than the average of aligned sites = 88630 Number in coding regions = 82835 Number in noncoding regions = 5795 Number of orfs with sites within 600 bp upstream = 1571 Fraction of orfs with sites within 600 bp upstream = 0.252329 Motif number 3 CAGTACGCCCAGGTGTGGGTTTCGCCATCC 3 66 0 AGGTGTGGGT 0.781681 -235 CTGCCTGATCTGCAGCGGGTGCTGGGCGAC 3 118 1 TGCAGCGGGT 0.963512 -183 CGGCGACAAATCCGGGCGGTGCGCTACGTA 4 29 1 TCCGGGCGGT 0.904941 -63 TCGGTTTGCGTGGGGCCGGTGGGTAGACGG 5 90 1 TGGGGCCGGT 0.979602 -165 AAATCAGAGGTGCTGCCGATTACACCACGA 5 182 0 TGCTGCCGAT 0.958365 -73 TGCGGGCGTCGAGCCGCTCCCGCGGTTG 6 9 1 TCGAGCCGCT 0.844655 -194 CGCATCCGGCTGAGGCGGATACGCCAGGAA 6 45 0 TGAGGCGGAT 0.723039 -158 CCGGCCTCGATCGTGGCGATCCCGGCCAGG 6 91 1 TCGTGGCGAT 0.782972 -112 GCAAGTCTGGAGGTGCGGGT 6 193 1 AGGTGCGGGT 0.930595 -10 GAGAAGTAAGTGATGTGGCTGCGAACTTCG 8 21 1 TGATGTGGCT 0.682783 -176 GCATACTGTATCCGGTGGGTACGCAAGGCA 8 92 0 TCCGGTGGGT 0.907282 -105 GGCCAACCGATGATGCCGGTGATCGCCGAC 11 15 1 TGATGCCGGT 0.959104 -286 CGCAGAAGTGTGGTGCGGGTCGGGCGGCCG 11 70 0 TGGTGCGGGT 0.989549 -231 GCGGCTCTGCTGCTGGGGCTACGTCGAACA 11 108 0 TGCTGGGGCT 0.905277 -193 CCGTCATCGACCCTGCGGCTCTGCTGCTGG 11 122 0 CCCTGCGGCT 0.843065 -179 GCTTCGCATTCGGTGCCGATATGCCGAAAA 11 156 0 CGGTGCCGAT 0.818027 -145 TTCGTTCATCTCCTGCGGGTTGAAACCAGC 13 256 0 TCCTGCGGGT 0.986119 -22 ACCGGCTCGATGCTGTCGGTCGATGGTCTG 15 157 0 TGCTGTCGGT 0.965943 -144 ACCGACAGCATCGAGCCGGTCCAGCATCCC 15 167 1 TCGAGCCGGT 0.940537 -134 TCAGTGGGTGTCCTGTCGGTGGCGCGTCCC 15 234 0 TCCTGTCGGT 0.950133 -67 ********** Masking position 10 Map Score: 26.0626 Number of sites scoring better than the average of aligned sites = 6504 Number in coding regions = 6107 Number in noncoding regions = 397 Number of orfs with sites within 600 bp upstream = 362 Fraction of orfs with sites within 600 bp upstream = 0.0581433 Motif number 4 CGTTCCTCCTGACGACTCCGATCCACCCAGTATC 1 68 0 GCGACCGACC 0.992763 -28 CGGAGTCGATGGTGATTCGGAGCCCGA 2 4 0 GTGATCGACC 0.831574 -108 TCGCCCCGTGGGCGACTCGGAGTCGATGGTGATT 2 21 0 GCGACCGATC 0.994058 -91 TCGCCCACGGGGCGACTCGGAGTCGACGTGTTGG 2 40 1 GCGACCGATC 0.994058 -72 CTACAGGCTCGGCGATGCGGGCCTGCGCTCTCGC 3 177 0 GCGATCGGCT 0.89991 -124 AAGGCTCGGCGAAGACAGCGGCTCTGATCGACGC 3 252 1 GAGACGGGTC 0.937857 -49 TTCGAGTCCTGGCGACGGAGCTTCAAGGAGGGTT 5 230 1 GCGACGGCTC 0.985163 -25 CCTCGATCGTGGCGATCCCGGCCAGGATGTAGAC 6 95 1 GCGATCGGCA 0.689259 -108 CGGCCAGGATGTAGACCGCGATCTGCAGCGTCGG 6 113 1 GAGACGGACT 0.816101 -90 CCCACGCCACGTCGGCGGCGCTTCTTAGACTGGG 8 170 1 GCGGCGGCTC 0.952188 -27 CCGCGCCGGCGACGATGCAGAGCGAAGCGATGAG 10 15 1 GCGATCGACG 0.897909 -38 CCGCAGGGTCGATGACGGTGATTTTTCGGCATAT 11 134 1 GTGACGGATT 0.74368 -167 CGCCGATCGAGTCGACCGGGGGTCACTGCAGCCC 13 62 1 GCGACGGGTC 0.988595 -216 CTCGATTACGGACCACCCAGAACCAATCGCTAC 15 10 0 GCCACCGACC 0.889932 -291 ACAGCATCGAGCCGGTCCAGCATCCCGACCACCC 15 171 1 GCGGTCGCTC 0.910712 -130 TGGGTGTCCTGTCGGTGGCGCGTCCCAGTATTCG 15 226 0 GCGGTGGCTC 0.884924 -75 CCGCCGATAGTGAATTCGGCGCCGGA 16 3 1 GCGATGGATT 0.923195 -99 GCGGGCGCCCGCCGATAGTGAATTCGGCGACAAG 16 50 0 GCGATGGATT 0.923195 -52 CGGCGAGCAGACACAGACTCGCATCCGGCG 17 7 1 GAGACCGATC 0.966779 -89 CCTGGCGCGAGCAGACACAGAATCGCACGGGCGA 17 45 0 GAGACCGATC 0.966779 -51 TGGCCGGACGGCCGACGCCGGCTGCCGAAACGCC 18 42 0 GCGACCGGTG 0.95028 -43 * **** * ** ** Masking position 10 Map Score: 36.1398 Number of sites scoring better than the average of aligned sites = 5761 Number in coding regions = 5337 Number in noncoding regions = 424 Number of orfs with sites within 600 bp upstream = 317 Fraction of orfs with sites within 600 bp upstream = 0.0509155 Motif number 5 ACTCCGAGTCGCCCCGTGGGCGACTCGGAG 2 33 0 GCCCCGTGGG 0.819882 -79 ACTCGGAGTCGACGTGTTGGATGCAAACCG 2 54 1 GACGTGTTGG 0.308781 -58 CCAGTACGCCCAGGTGTGGGTTTCGCCATC 3 67 0 CAGGTGTGGG 0.788462 -234 GCTGCCTGATCTGCAGCGGGTGCTGGGCGA 3 117 1 CTGCAGCGGG 0.795758 -184 CAAACGGCGAGTGCCGCCGAGCACGATAAC 3 220 1 GTGCCGCCGA 0.793524 -81 ATGCCGTGGAGTGGCGTCGATCAGAGCCGC 3 269 0 GTGGCGTCGA 0.532738 -32 AGGGCCGGATAAGGCGCCGGAAAACCCGAC 5 30 0 AAGGCGCCGG 0.806078 -225 ATCGGTTTGCGTGGGGCCGGTGGGTAGACG 5 89 1 GTGGGGCCGG 0.965782 -166 AGCGTTGACTGTGCTGACGGCGTTGACACC 5 124 1 GTGCTGACGG 0.853586 -131 AAAATCAGAGGTGCTGCCGATTACACCACG 5 183 0 GTGCTGCCGA 0.741829 -72 GGTTCGAGTCCTGGCGACGGAGCTTCAAGG 5 228 1 CTGGCGACGG 0.81086 -27 GGAAACCGAGCAACCGCGGGAGCGGCTCGA 6 19 0 CAACCGCGGG 0.702217 -184 CCACGATCGAGGCCGGCGGACTCGTCCCGA 6 77 0 GGCCGGCGGA 0.590163 -126 TTGAGTTCGGCCGCCGCGGGAAAGCAAGTC 6 170 1 CCGCCGCGGG 0.88698 -33 AGCAAGTCTGGAGGTGCGGGT 6 192 1 GAGGTGCGGG 0.933433 -11 GTTGTCGCGGGCACGGCGGGAGCCTGGGCA 8 56 1 GCACGGCGGG 0.6413 -141 TGCATACTGTATCCGGTGGGTACGCAAGGC 8 93 0 ATCCGGTGGG 0.64887 -104 CTAACTATCGCGCGTGTCGGAATTGTGGCC 8 142 1 CGCGTGTCGG 0.83363 -55 CGCCGCCGACGTGGCGTGGGCCACAATTCC 8 160 0 GTGGCGTGGG 0.942795 -37 CGGCCAACCGATGATGCCGGTGATCGCCGA 11 14 1 ATGATGCCGG 0.241944 -287 GGTGCGGGTCGGGCGGCCGGCTTAATCGCG 11 59 0 GGGCGGCCGG 0.971447 -242 TCGCAGAAGTGTGGTGCGGGTCGGGCGGCC 11 71 0 GTGGTGCGGG 0.970224 -230 CCCTGCGGCTCTGCTGCTGGGGCTACGTCG 11 112 0 CTGCTGCTGG 0.800757 -189 CACCGAATGCGAAGCGTGGGTAGCGCGCGG 11 171 1 GAAGCGTGGG 0.49887 -130 AAGCGTGGGTAGCGCGCGGGTTACGTTTCA 11 182 1 AGCGCGCGGG 0.848248 -119 AGTCCTCACCCTAGTGCGGGAATCCCGGCG 11 251 0 CTAGTGCGGG 0.76268 -50 CCGCGGCCGAGTCCTGAGGGCTGCAGTGAC 13 83 0 GTCCTGAGGG 0.781054 -195 GTCGTATCCAAACCGGCGGGCGGCCGTACC 13 204 0 AACCGGCGGG 0.6777 -74 GTTCGTTCATCTCCTGCGGGTTGAAACCAG 13 257 0 CTCCTGCGGG 0.946991 -21 TCTTTCTGAACGGCGGTTGGCAGACAACAG 14 42 1 CGGCGGTTGG 0.554544 -155 CATTTGTCCGCGCCCGTCGGTGATCCACTT 14 86 0 CGCCCGTCGG 0.895212 -111 AGAAGTCCCCGAAGCGCGGGCCATTTGTCC 14 107 0 GAAGCGCGGG 0.724665 -90 GCAGCGGTTGCCGGTGCCGGGGCATGTGTT 15 95 0 CCGGTGCCGG 0.850813 -206 GACCGGCTCGATGCTGTCGGTCGATGGTCT 15 158 0 ATGCTGTCGG 0.777106 -143 ATGCTTGCGGATCGGGACGGGTGGTCGGGA 15 193 0 ATCGGGACGG 0.349749 -108 ATCAGTGGGTGTCCTGTCGGTGGCGCGTCC 15 235 0 GTCCTGTCGG 0.905782 -66 GCTTGCTGTTGGCTGAAATCAC 15 289 0 TTGCTGTTGG 0.0791949 -12 GACACACTGCCGGGCGCCGGCGCGGGCGCC 16 75 0 CGGGCGCCGG 0.923684 -27 GCACGGGCGAGGGGCGCCGGATGCGAGTCT 17 25 0 GGGGCGCCGG 0.97607 -71 CACGGCGTTTCGGCAGCCGGCGTCGGCCGT 18 39 1 CGGCAGCCGG 0.786496 -46 CCTAATGGGTGGCCGGACGGCCGACGCCGG 18 55 0 GGCCGGACGG 0.745005 -30 CGCACTGTAGGGCCTGTGGGCAGAATTGGT 19 46 1 GGCCTGTGGG 0.900888 -24 ********** Masking position 6 Map Score: 55.0404 Number of sites scoring better than the average of aligned sites = 42690 Number in coding regions = 40093 Number in noncoding regions = 2597 Number of orfs with sites within 600 bp upstream = 1215 Fraction of orfs with sites within 600 bp upstream = 0.195149 Motif number 6 CGGTACCCACGAGGTGGCTCACGCATTCAGAC 2 88 0 GAGGGCTCAC 0.876852 -24 AAGCAAGTACCAAGCGGCGCAACGGCGGTTCA 3 27 1 CAGGGCGCAA 0.829802 -274 CATGCTGCCTGATCTGCAGCGGGTGCTGGGCG 3 114 1 GACGCAGCGG 0.575122 -187 GGGCGACGGTCAGCGGCCTCGGCGGGGGCCGA 3 141 1 CACGCCTCGG 0.896611 -160 GTCGCGGTATCTACAGGCTCGGCGATGCGGGC 3 189 0 CTCGGCTCGG 0.955278 -112 AGCACGATAACTAAAGGCTCGGCGAAGACAGC 3 239 1 CTAGGCTCGG 0.901147 -62 GCCACATCAACAAGGGTATCGGTTTGCGTGGG 5 72 1 CAGGTATCGG 0.784757 -183 AGCAACCGCGGGAGCGGCTCGACGCCCGCA 6 9 0 GGGGGCTCGA 0.800124 -194 GCCTCAGCCGGATGCGCATCGGGACGAGTCCG 6 59 1 GAGGCATCGG 0.82963 -144 GAAAGCAAGTCTGGAGGTGCGGGT 6 189 1 CTGGGTGCGG 0.681377 -14 AAGCGCCGCCGACGTGGCGTGGGCCACAATTC 8 161 0 GAGGGCGTGG 0.707174 -36 GGTTCGCCGCAGCGGCTCAGTAAT 9 9 1 GCGGGCTCAG 0.663856 -16 GCGAAGCGATGAGGAGGAGCGGCGCAG 10 36 1 GAGGGAGCGG 0.963165 -17 GGTTACGTTTCACAGGGCCCGGATGGGTACCC 11 200 1 CAAGGCCCGG 0.84521 -101 CTCGAGTCAGCAAGATGATCAGTCCTCACCCT 11 269 0 CAGTGATCAG 0.249485 -32 TGCCTTGGTGCACGGGGCTCGCCCGTTGGTGT 13 23 0 CAGGGCTCGC 0.985034 -255 TGCACCAAGGCACGGGGCTCGCCGATCGAGTC 13 43 1 CAGGGCTCGC 0.985034 -235 GGCCGCGGTCGTTGTGGCTCGACGAAGTAATG 13 105 1 GTGGGCTCGA 0.876073 -173 CGGGCCTATGCACCCGGCTCGCAAACATTACA 13 173 0 CACGGCTCGC 0.959515 -105 CAATGGTCCCCAAGTGGATCACCGACGGGCGC 14 75 1 CAGGGATCAC 0.799496 -122 AGTGGATCACCGACGGGCGCGGACAAATGGCC 14 87 1 CGCGGCGCGG 0.903264 -110 CGGGCGCGGACAAATGGCCCGCGCTTCGGGGA 14 100 1 CAAGGCCCGC 0.67614 -97 TTCGAACATGCTTGCGGATCGGGACGGGTGGT 15 198 0 CTGGGATCGG 0.951673 -103 ACTTTTGTCCCAAGGGTATCAGTGGGTGTCCT 15 250 0 CAGGTATCAG 0.399552 -51 CGCGGCCGCCGACCTGGCGCGAGCAGACACAG 17 59 0 GACGGCGCGA 0.850795 -37 ACCCTCATCTTGCCGCGCGGCCGCCGACCT 17 76 0 CTGCGCGCGG 0.68389 -20 TTAGCACACCGAGAGGGATCGACCA 19 4 0 GAAGGATCGA 0.511333 -66 ** * ******* Masking position 10 Map Score: 29.3499 Number of sites scoring better than the average of aligned sites = 11507 Number in coding regions = 10568 Number in noncoding regions = 939 Number of orfs with sites within 600 bp upstream = 668 Fraction of orfs with sites within 600 bp upstream = 0.107292 Motif number 7 AGTATCGCAACACCGCAACCGAGCTTGTCG 1 44 0 CACCGCAACC 0.323962 -52 TCCTCCTGACGACTCCGATCCACCCAGTAT 1 69 0 GACTCCGATC 0.243255 -27 TTGCATCCAACACGTCGACTCCGAGTCGCC 2 50 0 CACGTCGACT 0.29649 -62 TACCAAGCGGCGCAACGGCGGTTCAACTTC 3 34 1 CGCAACGGCG 0.489261 -267 GGTAGACGGCGACAGCGTTGACTGTGCTGA 5 111 1 GACAGCGTTG 0.184769 -144 CGACGGATTGCACATCGATGTGACTTTAGA 5 155 0 CACATCGATG 0.845193 -100 CTGCCGATTACACCACGACGGATTGCACAT 5 170 0 CACCACGACG 0.970766 -85 GAAGCTCCGTCGCCAGGACTCGAACCTGAA 5 224 0 CGCCAGGACT 0.424443 -31 ACCGCGGGAGCGGCTCGACGCCCGCA 6 7 0 CGGCTCGACG 0.753986 -196 CCGGCGGACTCGTCCCGATGCGCATCCGGC 6 65 0 CGTCCCGATG 0.707444 -138 TGGCCGGGATCGCCACGATCGAGGCCGGCG 6 89 0 CGCCACGATC 0.970759 -114 TGGCGATCCCGGCCAGGATGTAGACCGCGA 6 104 1 GGCCAGGATG 0.612438 -99 CCAGGATGTAGACCGCGATCTGCAGCGTCG 6 116 1 GACCGCGATC 0.822582 -87 ATTGGCCCGACAACCCGACGCTGCAGATCG 6 131 0 CAACCCGACG 0.741185 -72 CCGTGCCCGCGACAACGATGTCGAAGTTCG 8 42 0 GACAACGATG 0.768551 -155 TTGTGGCCCACGCCACGTCGGCGGCGCTTC 8 164 1 CGCCACGTCG 0.820597 -33 GATCCGCGCCGGCGACGATGCAGAGCGAAG 10 12 1 GGCGACGATG 0.695268 -41 CGATGCAGAGCGAAGCGATGAGGAGGAGCG 10 27 1 CGAAGCGATG 0.507704 -26 AACCGATTATCACCGCGATTAAGCCGGCCG 11 46 1 CACCGCGATT 0.836301 -255 GACCCCCGGTCGACTCGATCGGCGAGCCCC 13 56 0 CGACTCGATC 0.654091 -222 TTCGTCGAGCCACAACGACCGCGGCCGAGT 13 101 0 CACAACGACC 0.843165 -177 TGTTCGATATCACCCCGATCTTTCTGAACG 14 24 1 CACCCCGATC 0.949353 -173 CCCTAGCCCTGGCCACGATGGGCTGGTCGG 14 139 1 GGCCACGATG 0.949011 -58 TATCCTGGCTCACCTCGATTACGGACCACC 15 27 0 CACCTCGATT 0.794019 -274 GATGCTGGACCGGCTCGATGCTGTCGGTCG 15 165 0 CGGCTCGATG 0.7715 -136 GCCGGTCCAGCATCCCGACCACCCGTCCCG 15 181 1 CATCCCGACC 0.601252 -120 CCCGACCACCCGTCCCGATCCGCAAGCATG 15 194 1 CGTCCCGATC 0.702876 -107 AACACTGTGGCACAACGATGTATCCACGGC 18 15 1 CACAACGATG 0.907282 -70 ********** Masking position 7 Map Score: 18.9829 Number of sites scoring better than the average of aligned sites = 23823 Number in coding regions = 22308 Number in noncoding regions = 1515 Number of orfs with sites within 600 bp upstream = 929 Fraction of orfs with sites within 600 bp upstream = 0.149213 Motif number 8 CCGCAACCGAGCTTGTCGGCCTGTGCGTGAT 1 31 0 GCTGTCGGCC 0.686657 -65 TGTGGGTTTCGCCATCCGGGAAGTTGAACCG 3 52 0 GCATCCGGGA 0.866291 -249 CTGCAGATCAGGCAGCATGGCCTGCAATGGC 3 102 0 GGAGCATGGC 0.832379 -199 GATCTGCAGCGGGTGCTGGGCGACGGTCAGC 3 124 1 GGTGCTGGGC 0.852511 -177 TACAGGCTCGGCGATGCGGGCCTGCGCTCTC 3 179 0 GCATGCGGGC 0.773899 -122 TTTGTCGCCGGGTAGCCGGGATGCGACT 4 8 0 GGAGCCGGGA 0.975832 -84 ACCCGCGTCGGGTTTTCCGGCGCCTTATCCG 5 24 1 GGTTTCCGGC 0.823096 -231 GCGGTTGCTCGGTTTCCTGGCGTATCCGCCT 6 32 1 GGTTCCTGGC 0.932019 -171 CTCGATCGTGGCGATCCCGGCCAGGATGTAG 6 96 1 GCATCCCGGC 0.935891 -107 TGCAGCGTCGGGTTGTCGGGCCAATGGGCTA 6 136 1 GGTGTCGGGC 0.977571 -67 CCGCGGGAAAGCAAGTCTGGAGGTGCGGGT 6 183 1 GCAGTCTGGA 0.671508 -20 CATCGTTGTCGCGGGCACGGCGGGAGCCTGG 8 52 1 GCGGCACGGC 0.790522 -145 CGGGCACGGCGGGAGCCTGGGCAGTAGCGTG 8 63 1 GGAGCCTGGG 0.932088 -134 CTGGGCAGTAGCGTGCCTTGCGTACCCACCG 8 79 1 GCTGCCTTGC 0.82509 -118 CGGCATCATCGGTTGGCCGGCG 11 2 0 GGTGGCCGGC 0.892359 -299 GAAGTGTGGTGCGGGTCGGGCGGCCGGCTTA 11 65 0 GCGGTCGGGC 0.941414 -236 GGGCCCGGATGGGTACCCGGATATGCGGCAC 11 214 1 GGTACCCGGA 0.507567 -87 GAATCCCGGCGCTTGCAGTGCCGCATATCCG 11 231 0 GCTGCAGTGC 0.66112 -70 CCCTAGTGCGGGAATCCCGGCGCTTGCAGTG 11 242 0 GGATCCCGGC 0.954934 -59 CGAAGCCGGGCCCAACTGAAA 12 1 1 CGAGCCGGGC 0.939402 -29 GAGTCCTGAGGGCTGCAGTGACCCCCGGTCG 13 74 0 GGTGCAGTGA 0.358027 -204 GCTAAATTAGGGCAGCCTTGCCTATCATTAC 13 131 0 GGAGCCTTGC 0.714253 -147 TGTAATGTTTGCGAGCCGGGTGCATAGGCCC 13 173 1 GCAGCCGGGT 0.848873 -105 ATACGGCCGAGCTATCCTGGCTCACCTCGAT 15 38 0 GCATCCTGGC 0.910499 -263 CAGCGGTTGCCGGTGCCGGGGCATGTGTTGA 15 93 0 CGTGCCGGGG 0.738462 -208 GATCGGGACGGGTGGTCGGGATGCTGGACCG 15 183 0 GGGGTCGGGA 0.822594 -118 TTGTCCCAAGGGTATCAGTGGGTGTCCTGTC 15 247 0 GGATCAGTGG 0.14444 -54 GCGCCCGGCAGTGTGTCGGGCACA 16 88 1 GTTGTCGGGC 0.658 -14 CCGCGCGGCCGCCGACCTGGCGCGAGCAGAC 17 63 0 GCGACCTGGC 0.508783 -33 ACGGCGTTTCGGCAGCCGGCGTCGGCCGTCC 18 40 1 GGAGCCGGCG 0.762515 -45 AGCCGGCGTCGGCCGTCCGGCCACCCATTAG 18 53 1 GGCGTCCGGC 0.722347 -32 ** ******** Masking position 10 Map Score: 37.5794 Number of sites scoring better than the average of aligned sites = 20863 Number in coding regions = 19280 Number in noncoding regions = 1583 Number of orfs with sites within 600 bp upstream = 904 Fraction of orfs with sites within 600 bp upstream = 0.145198 Motif number 9 CCCGCACCACACTTCTGCGACGTACGGTGT 11 81 1 ACTTCTGCGA 0.843149 -220 AAATTCAGTCCTCGAGTCAGC 11 290 0 AATTCAGTCC 0.761265 -11 ACCGGGGGTCACTGCAGCCCTCAGGACTCG 13 76 1 ACTGCAGCCC 0.955853 -202 AATGATAGGCAAGGCTGCCCTAATTTAGCA 13 133 1 AAGGCTGCCC 0.951813 -145 TAGGCCCGGTACGGCCGCCCGCCGGTTTGG 13 197 1 ACGGCCGCCC 0.886684 -81 CGCTTCGGGGACTTCTGTCCCTAGCCCTGG 14 121 1 ACTTCTGTCC 0.88816 -76 GCCGATAGTGAATTCGGCGCCGGAACACGC 16 13 1 AATTCGGCGC 0.950772 -89 GCCGATAGTGAATTCGGCGACAAGAACCCG 16 44 0 AATTCGGCGA 0.769519 -58 TCGGTGTGCTAATGCTGCGCTTCGCACTGT 19 24 1 AATGCTGCGC 0.968843 -46 GGCTACCAATTCTGCCCACAGGCCCTA 19 53 0 AATTCTGCCC 0.976959 -17 ********** Masking position 1 Map Score: 5.30037 Number of sites scoring better than the average of aligned sites = 1070 Number in coding regions = 969 Number in noncoding regions = 101 Number of orfs with sites within 600 bp upstream = 106 Fraction of orfs with sites within 600 bp upstream = 0.0170254 Motif number 10 GGCGACTCGGAGTCGACGTGTTGGATGCAAA 2 50 1 AGTCGACGTT 0.268192 -62 ACTCGCCGTTTGTCGCGGTATCTACAGGCTC 3 201 0 TGTCGCGGTT 0.924759 -100 AAACGGCGAGTGCCGCCGAGCACGATAACTA 3 221 1 TGCCGCCGAC 0.756641 -80 TGCCGTGGAGTGGCGTCGATCAGAGCCGCTG 3 267 0 TGGCGTCGAC 0.52499 -34 CGCCCGGATTTGTCGCCGGGTAGCCGGGATG 4 16 0 TGTCGCCGGT 0.98284 -76 CGCGCTGCCCTCGCCGTTTGGGATCGAAT 4 73 0 CCTCGCCGTT 0.854859 -19 TCGGGTTTTCCGGCGCCTTATCCGGCCCTTT 5 31 1 CGGCGCCTTT 0.795677 -224 CAGTCAACGCTGTCGCCGTCTACCCACCGGC 5 104 0 TGTCGCCGTT 0.978041 -151 CTGACGGCGTTGACACCGTCTAAAGTCACAT 5 137 1 TGACACCGTT 0.453004 -118 ATGTGCAATCCGTCGTGGTGTAATCGGCAGC 5 170 1 CGTCGTGGTT 0.754968 -85 TCGACATCGTTGTCGCGGGCACGGCGGGAGC 8 48 1 TGTCGCGGGA 0.577521 -149 GTCTAAGAAGCGCCGCCGACGTGGCGTGGGC 8 169 0 CGCCGCCGAG 0.683254 -28 CGCTCTGCATCGTCGCCGGCGCGGATCA 10 8 0 CGTCGCCGGG 0.891015 -45 TTCGGCATATCGGCACCGAATGCGAAGCGTG 11 158 1 CGGCACCGAT 0.846174 -143 GGTCTGAGTGCGTCGTCGTTTGATGCGTTGA 15 132 0 CGTCGTCGTT 0.922307 -169 GGGCGTGTTCCGGCGCCGAATTCACTATCGG 16 14 0 CGGCGCCGAT 0.986036 -88 CCCGGGTTCTTGTCGCCGAATTCACTATCGG 16 42 1 TGTCGCCGAT 0.972959 -60 TGCCGGGCGCCGGCGCGGGCGCCCGCCGATA 16 67 0 CGGCGCGGGG 0.914096 -35 CACGGGCGAGGGGCGCCGGATGCGAGTCTGT 17 23 0 GGGCGCCGGT 0.929624 -73 GCCGGACGGCCGACGCCGGCTGCCGAAACGC 18 43 0 CGACGCCGGT 0.95236 -42 ********* * Masking position 4 Map Score: 23.2227 Number of sites scoring better than the average of aligned sites = 16373 Number in coding regions = 15554 Number in noncoding regions = 819 Number of orfs with sites within 600 bp upstream = 525 Fraction of orfs with sites within 600 bp upstream = 0.0843238 Motif number 11 CTGACGACTCCGATCCACCCAGTATCGCAA 1 64 0 CGATCCACCC 0.63342 -32 GATGGTGATTCGGAGCCCGA 2 1 0 CGGAGCCCGA 0.354406 -111 CTGACCGTCGCCCAGCACCCGCTGCAGATC 3 124 0 CCCAGCACCC 0.893922 -177 GCGAGTGCCGCCGAGCACGATAACTAAAGG 3 226 1 CCGAGCACGA 0.862406 -75 AGTCGCATCCCGGCTACCCGGCGACAAAT 4 10 1 CCGGCTACCC 0.959815 -82 GATAAGGCGCCGGAAAACCCGACGCGGGTG 5 23 0 CGGAAAACCC 0.505708 -232 AACGCTGTCGCCGTCTACCCACCGGCCCCA 5 100 0 CCGTCTACCC 0.937412 -155 CGCCAGGAAACCGAGCAACCGCGGGAGCGG 6 24 0 CCGAGCAACC 0.944052 -179 GCCCATTGGCCCGACAACCCGACGCTGCAG 6 135 0 CCGACAACCC 0.949005 -68 CAGGCTCCCGCCGTGCCCGCGACAACGATG 8 52 0 CCGTGCCCGC 0.773013 -145 CGCCGGCCAACCGATGATGCCG 11 3 1 CCGGCCAACC 0.945284 -298 CCGGTGATCGCCGACCAACCGATTATCACC 11 30 1 CCGACCAACC 0.961708 -271 CGCGATTAAGCCGGCCGCCCGACCCGCACC 11 59 1 CCGGCCGCCC 0.936383 -242 TGCCGCATATCCGGGTACCCATCCGGGCCC 11 214 0 CCGGGTACCC 0.941317 -87 CGGGCGAGCCCCGTGCACCAAGGCACGGGG 13 30 1 CCGTGCACCA 0.898856 -248 AGTAGTAAGCCGGAGTACGCTGGTTTCAAC 13 238 1 CGGAGTACGC 0.769249 -40 TGCCTTTGATCCGACCAGCCCATCGTGGCC 14 149 0 CCGACCAGCC 0.964428 -48 ACCTCGATTACGGACCACCCAGAACCAATC 15 16 0 CGGACCACCC 0.99017 -285 AGCATCGAGCCGGTCCAGCATCCCGACCAC 15 173 1 CGGTCCAGCA 0.445644 -128 GTCCAGCATCCCGACCACCCGTCCCGATCC 15 185 1 CCGACCACCC 0.995323 -116 AATTCGGCGCCGGAACACGCCCGGGTTCTT 16 23 1 CGGAACACGC 0.779348 -79 CGTCGGCCGTCCGGCCACCCATTAGGCTTT 18 59 1 CCGGCCACCC 0.993213 -26 ********** Masking position 1 Map Score: 40.004 Number of sites scoring better than the average of aligned sites = 5827 Number in coding regions = 5377 Number in noncoding regions = 450 Number of orfs with sites within 600 bp upstream = 389 Fraction of orfs with sites within 600 bp upstream = 0.0624799 Motif number 12 TCCGAGTCGCCCACGGGGCGACTCGGAGTC 2 34 1 CCACGGGGCG 0.811851 -78 AAAGCAAGTACCAAGCGGCGCAACGGCGGT 3 26 1 CCAAGCGGCG 0.991655 -275 AGATACCGCGACAAACGGCGAGTGCCGCCG 3 209 1 ACAAACGGCG 0.947254 -92 CAATTCGATCCCAAACGGCGAGGGCAGCGC 4 71 1 CCAAACGGCG 0.980662 -21 CGTTGACTGTGCTGACGGCGTTGACACCGT 5 126 1 GCTGACGGCG 0.743076 -129 AGGTTCGAGTCCTGGCGACGGAGCTTCAAG 5 227 1 CCTGGCGACG 0.753221 -28 GCCCAGTCTAAGAAGCGCCGCCGACGTGGC 8 175 0 AGAAGCGCCG 0.594705 -22 AGCGATGAGGAGGAGCGGCGCAG 10 40 1 AGGAGCGGCG 0.677699 -13 ATGCGGCACTGCAAGCGCCGGGATTCCCGC 11 236 1 GCAAGCGCCG 0.872589 -65 TGTGTCTACACCAACGGGCGAGCCCCGTGC 13 16 1 CCAACGGGCG 0.892285 -262 CCCGGTCGACTCGATCGGCGAGCCCCGTGC 13 52 0 TCGATCGGCG 0.769365 -226 CTGTCGTATCCAAACCGGCGGGCGGCCGTA 13 206 0 CAAACCGGCG 0.763981 -72 CTGTTGTCTGCCAACCGCCGTTCAGAAAGA 14 42 0 CCAACCGCCG 0.936751 -155 GGTCAACGCATCAAACGACGACGCACTCAG 15 130 1 TCAAACGACG 0.456109 -171 CAGTGGGTGTCCTGTCGGTGGCGCGTCCCA 15 233 0 CCTGTCGGTG 0.566649 -68 CGCCGAATTCACTATCGGCGG 16 2 0 ACTATCGGCG 0.931231 -100 CGCCGAATTCACTATCGGCGGGCGCCCGCG 16 55 1 ACTATCGGCG 0.931231 -47 TGGTCGATCCCTCTCGGTGTGCTAATGCT 19 10 1 CCTCTCGGTG 0.473044 -60 ********** Masking position 7 Map Score: 13.581 Number of sites scoring better than the average of aligned sites = 8969 Number in coding regions = 8263 Number in noncoding regions = 706 Number of orfs with sites within 600 bp upstream = 508 Fraction of orfs with sites within 600 bp upstream = 0.0815933 Motif number 13 ********** No masking Map Score: -9.99433e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: -9.99433e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -9.99433e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0