AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00061_mtub_reg_100.orf -o00061_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 Rv0144 101 hypothetical protein Rv0144 #2 Rv0145 88 hypothetical protein Rv0145 #3 Rv0146 42 hypothetical protein Rv0146 #4 Rv0147 94 hypothetical protein Rv0147 #5 Rv0148 74 hypothetical protein Rv0148 #6 Rv0218 92 hypothetical protein Rv0218 #7 Rv0221 43 hypothetical protein Rv0221 #8 echA1 30 echA1 #9 fabG4_fadA2 141 fabG4: fabG4, fadA2: fadA2 #10 fadD30 300 fadD30 #11 aceA 274 aceA #12 fadB2 81 fadB2 #13 fabH 81 fabH #14 end 194 end #15 lpqP 31 lpqP #16 fadE8 59 fadE8 #17 aldA 201 aldA #18 Rv0769 30 hypothetical protein Rv0769 #19 fadA 156 fadA #20 accD3_echA6 26 accD3: accD3, echA6: echA6 #21 Rv0976c 197 hypothetical protein Rv0976c #22 echA9 186 echA9 #23 fadA3 52 fadA3 #24 Rv1075c 300 hypothetical protein Rv1075c #25 mcr 103 mcr #26 fadA4 300 fadA4 #27 fabG2 128 fabG2 #28 Rv2000 70 hypothetical protein Rv2000 #29 fabG3 75 fabG3 #30 fabD 238 fabD #31 acpM 75 acpM #32 kasB 30 kasB #33 echA14 300 echA14 #34 scoA 82 scoA #35 fadD35 115 fadD35 #36 echA15 52 echA15 #37 Rv2767c 173 hypothetical protein Rv2767c #38 ltp1 32 ltp1 #39 Rv2792c 201 hypothetical protein Rv2792c #40 echA16 46 echA16 #41 Rv2949c 25 hypothetical protein Rv2949c #42 fadD29 300 fadD29 #43 serB2 37 serB2 #44 ctaD 214 ctaD #45 accA3 107 accA3 #46 echA18 236 echA18 #47 lpqD 73 lpqD #48 acrA1 45 acrA1 #49 Rv3485c 205 hypothetical protein Rv3485c #50 Rv3502c 24 hypothetical protein Rv3502c #51 fdxD 214 fdxD #52 echA19 73 echA19 #53 Rv3545c_fadA5 111 Rv3545c: hypothetical protein Rv3545c, fadA5: fadA5 #54 Rv3548c 22 hypothetical protein Rv3548c #55 Rv3549c_echA20 54 Rv3549c: hypothetical protein Rv3549c, echA20: echA20 #56 fadA6 64 fadA6 #57 Rv3557c 300 hypothetical protein Rv3557c #58 fadE30 47 fadE30 Motif number 1 CTATCCGACGATCAGCAGCGCAACCATGGC 1 28 1 ATCAGCAGCG 0.638909 -74 GACGTACGCGATCACCGCCGCTGTGCGGCG 1 67 1 ATCACCGCCG 0.762238 -35 CGTTTCGGATCTCCTCGCCGCACAGCGGCG 1 82 0 CTCCTCGCCG 0.907155 -20 AGACCTAACCGGCGGCCCCGAAGCGTAGTG 2 14 1 GGCGGCCCCG 0.961303 -75 CGGGGCGACAACCCGCGCCCAGG 5 4 0 ACCCGCGCCC 0.858462 -71 CAGGCTCCTCTCCGCAATCACAAT 5 61 0 CTCCTCTCCG 0.634399 -14 CAGGCCACCATCCCGATCCTCGT 6 80 0 GCCACCATCC 0.422358 -13 CGCAGCCCCCTACTCATAGG 7 34 0 CGCAGCCCCC 0.829109 -10 TAGTATGGCCCTCAACGGCCGATCCCCCGA 9 31 0 CTCAACGGCC 0.734548 -111 TACGTGTATTGGCGCGCCCGACCCCCACAC 9 103 1 GGCGCGCCCG 0.817281 -39 CTTCAACAAGCCGCCGCGTGAGGACGAA 10 9 1 AGCCGCCGCG 0.80287 -292 CCCAACGAGTGGCGTCTCCCCGGTAGGGTT 10 37 0 GGCGTCTCCC 0.789252 -264 TAGATGACCGAGCGGCAGCCTGTACGATTA 10 121 0 AGCGGCAGCC 0.780921 -180 ATCGATCCAGAGCCGCTTCGACCAGCCTGT 10 156 1 AGCCGCTTCG 0.680931 -145 GGTTCAACTGATCCGCTTCGACCACAGGCT 10 179 0 ATCCGCTTCG 0.451057 -122 GCCCAGACAGCTCGGCGGCCTGGTGGCCAG 10 249 1 CTCGGCGGCC 0.87629 -52 CGGCCTGGTGGCCAGGATCGTTACCGGGTA 10 264 1 GCCAGGATCG 0.461334 -37 GGTAAGGGATCGCCACTCCCA 10 290 1 CGCCACTCCC 0.717213 -11 AAACCCACGGATCGACGTCCTGCGGATCCG 11 12 0 ATCGACGTCC 0.483029 -263 TCAGTTTTTGGGCGACTTCGCAAAATTTGC 11 85 1 GGCGACTTCG 0.780864 -190 TGCGAATTTCGGCAACGGCCTGCGGACTTT 11 117 0 GGCAACGGCC 0.912323 -158 GACACGCTGTGCCATGGTCGAGTTAGCACA 11 170 1 GCCATGGTCG 0.517175 -105 TCCAGGCGGTGTCAACGGCGCAGCTTCACT 11 202 0 GTCAACGGCG 0.911465 -73 CTGACGCCCTACCGTCGTCCAGGCGGTGTC 11 219 0 ACCGTCGTCC 0.457049 -56 ACGACGGTAGGGCGTCAGCGTTTTCGGCAA 11 231 1 GGCGTCAGCG 0.917112 -44 ACTCAGGGCGGGCTCCGTCGGCGTGTCGTC 13 23 1 GGCTCCGTCG 0.787406 -59 CCGTCGGCGTGTCGTCGCCGTAGGTGCACA 13 37 1 GTCGTCGCCG 0.944344 -45 GCTGACTACGCGCTGCTCCGGGGAAACGTA 14 48 1 CGCTGCTCCG 0.663891 -147 CGTATTCGTGGGCCCCGGCGCATAAAGTGT 14 92 0 GGCCCCGGCG 0.524549 -103 GAATACGGACGGCAGCATCCCGTGCCGCGG 14 115 1 GGCAGCATCC 0.790362 -80 ATCACGTCCGGCCAGCCGCGGCACGGGATG 14 130 0 GCCAGCCGCG 0.87813 -65 ATCTGGTGAGACCCACACCCTCGGATCACG 14 154 0 ACCCACACCC 0.435484 -41 ACATGGGACTGTCCGCGACGCGACGTGGCC 17 71 1 GTCCGCGACG 0.5667 -131 ATGCACCAGGGGCCACGTCGCGTCGCGGAC 17 81 0 GGCCACGTCG 0.953554 -121 CCGCTACACCGTCCTGACCGATGCACCAGG 17 101 0 GTCCTGACCG 0.573937 -101 AGACCGTATCCGCAAGGCCGCTACACCGTC 17 118 0 CGCAAGGCCG 0.817722 -84 TTCTCCGACTCTCATCATCGATTGGACACT 17 168 0 CTCATCATCG 0.387797 -34 CCCGGATAGGCTCGACCGCC 19 1 0 CTCGACCGCC 0.589888 -156 CGCTGCGGCGCGCATCGTCGCCCGGATAGG 19 21 0 CGCATCGTCG 0.848417 -136 CGACGATGCGCGCCGCAGCGATACCTTGCC 19 31 1 CGCCGCAGCG 0.507286 -126 CCCTAACAGGGCCCCCGGCCAACCTGTTGG 19 64 0 GCCCCCGGCC 0.891323 -93 TAGGTCCCGTACCGGCACCCTAACAGGGCC 19 81 0 ACCGGCACCC 0.635014 -76 CAGCCTATATAGCCTCATCGC 20 16 1 AGCCTCATCG 0.565106 -11 CGGCAAAGCACCCGGCGTCCCGTAGCGAAA 21 30 1 CCCGGCGTCC 0.835648 -168 AAGCGGCCCGGTCTGCGCCGTCCATTGGAG 21 69 0 GTCTGCGCCG 0.888367 -129 GCGCAGACCGGGCCGCTTCGACTCAGGAAG 21 81 1 GGCCGCTTCG 0.873462 -117 GTTGGTTGGTAGCGTCGCCGATCCCAAGGG 21 149 1 AGCGTCGCCG 0.917682 -49 AGGGAGGAATCGCATGGCCCTGACTGTGGT 21 175 1 CGCATGGCCC 0.645895 -23 GATAAACCTTAGCCCCCGCGGGCACCGCTG 22 115 1 AGCCCCCGCG 0.771644 -72 CTTCAGGGGAGGCGAGGCCC 22 177 1 GGCGAGGCCC 0.86733 -10 TCTTGTCCATGCCGGGAGCCGTC 23 40 1 GCCGGGAGCC 0.614321 -13 CCAGAGGCTCAGCCGCTTCGTCACATGCTG 24 122 0 AGCCGCTTCG 0.680931 -179 CTCTGGCTCAGCCAACCCCGCGAACTTAGC 24 146 1 GCCAACCCCG 0.789689 -155 ACCACATTTGGTCCACACCGTGACGGGTTT 24 221 1 GTCCACACCG 0.857454 -80 GCTCGGTGACGGCGTCGTCGATTAGTGTTA 25 16 0 GGCGTCGTCG 0.944588 -88 GCCGTCACCGAGCTGCGGCGACATGATCTT 25 33 1 AGCTGCGGCG 0.792724 -71 CATTGACGCCCTCGACGGCGTATCGACGAA 25 61 0 CTCGACGGCG 0.908232 -43 CGGTGCCGGGCTCCGCGGCGCAA 26 4 0 CTCCGCGGCG 0.88692 -297 CGCCGCGGAGCCCGGCACCGCCAGCAGTGC 26 14 1 CCCGGCACCG 0.889866 -287 CGACGATCAGGGCATCCGCGAGGCACTGCT 26 36 0 GGCATCCGCG 0.865527 -265 ACCACTCGATGGCAACGTCCAGGTCGGCGA 26 109 1 GGCAACGTCC 0.848655 -192 CAACGTCCAGGTCGGCGACCGCAATACCGA 26 121 1 GTCGGCGACC 0.379093 -180 GTCACATGCTGGCTACCTCGTTGGTAACTG 26 163 0 GGCTACCTCG 0.512432 -138 GACCGATCAAGTCCACGCCCGTCACATGCT 26 183 0 GTCCACGCCC 0.907308 -118 GAATCTGCTTCTCCGGGTCGGTCAGATCGG 26 243 1 CTCCGGGTCG 0.730318 -58 TTATGACTACCTCCTCAGCGCACCCGAAAG 26 273 0 CTCCTCAGCG 0.717157 -28 GAATCTGCATCGCGAGGTCGGCCACCTTGC 27 53 1 CGCGAGGTCG 0.74814 -76 ATTTTGCACCGTCGGCGGCGAAGCTCTTCT 27 98 0 GTCGGCGGCG 0.963749 -31 GCGGGTCTCGGGCGTCAAATTCCG 28 57 0 GTCTCGGGCG 0.464688 -14 GAGGGGGTCCAGCAGGGGCCCCGGAAAGAT 30 54 1 AGCAGGGGCC 0.651088 -185 AGATACCAGGGGCGCCGTCGGACGGAAAGT 30 80 1 GGCGCCGTCG 0.952926 -159 GGTTGTTCTGGCCGAGTCCGCGG 31 4 0 GCCGAGTCCG 0.497574 -72 CATCGCGGGTCGCGAGGCCCGAG 32 18 1 CGCGAGGCCC 0.786006 -13 GGAAAAATTCCTCGACGGCCACCGTTAGAT 33 90 1 CTCGACGGCC 0.825629 -211 TGACCTGCGCATCGCCTCCGTAGCTCAGGT 33 124 1 ATCGCCTCCG 0.49355 -177 AGGTGGATAGAGCAAGGGCCTTCTAATCCC 33 150 1 AGCAAGGGCC 0.460256 -151 CTCGTTATGGGTCGACGCCCAGAGTCGCCT 33 255 1 GTCGACGCCC 0.905221 -46 CGGGCACCTCCGTGGTTTGAGT 33 289 0 GGCACCTCCG 0.853038 -12 CTGCCACGACCGCCACCCCGCACCTGCGTA 36 22 1 CGCCACCCCG 0.90056 -31 GGACATAGCCGGCCGGCCCGGTCGATGGGC 37 21 0 GGCCGGCCCG 0.890663 -153 CGTCGGTTGCCGCACCGGCCACGCCTGGCG 37 63 0 CGCACCGGCC 0.505239 -111 CGTCGGTTGCGGCCCCACCGTCGGTTGCCG 37 81 0 GGCCCCACCG 0.942628 -93 TGACGGTCCGGGCGGCGTCGGTTGCGGCCC 37 96 0 GGCGGCGTCG 0.966567 -78 GCGACGCCATGGCTCCGGCGGCTTGATTGA 37 123 0 GGCTCCGGCG 0.545689 -51 TAGCGAGCCCGGCGGGGGCGGCTGCGACGC 37 146 0 GGCGGGGGCG 0.54123 -28 CGCCCGGCTCCTCCTCACCCCG 39 3 0 CTCCTCACCC 0.578802 -199 CGTCCCGGACCGCATCCCCCTACATTGAGG 39 50 0 CGCATCCCCC 0.677635 -152 GGGCTACACGGCCTACGTCGCACGGCGATG 39 96 1 GCCTACGTCG 0.585422 -106 TGAACAGCGGCCCATCGCCGTGCGACGTAG 39 108 0 CCCATCGCCG 0.855162 -94 CGATCAGCAGGTCGACATCGAAGACGGTGC 42 28 1 GTCGACATCG 0.694238 -273 GGCTTAGCGAAGCCAGCCCGACGGTGTGTT 42 64 1 AGCCAGCCCG 0.518244 -237 TCGCGAATGGGGCTGCAGCCAGCGCTGACG 42 94 1 GGCTGCAGCC 0.460714 -207 CGGAATCGTCAGCCGCGGCGTCAGCGCTGG 42 112 0 AGCCGCGGCG 0.864867 -189 AGCAGGTACGGGCCACACCCGAGGGCCTAA 42 151 0 GGCCACACCC 0.882008 -150 CGAATCGCGTCGCGAGCCCGGGCAAGGTAC 42 199 1 CGCGAGCCCG 0.699872 -102 TTCGTATGAAAGCGGCAGCGCAGCCGTCTG 42 251 1 AGCGGCAGCG 0.881374 -50 TCGGCCAGCCGTCGACCCCGATTCGCGCGG 44 43 1 GTCGACCCCG 0.858414 -172 GACCCCGATTCGCGCGGGCGGAAAGCGTTG 44 56 1 CGCGCGGGCG 0.538129 -159 TCTGCAACGGCCCGCCGGCGGAGTCTGGCA 44 87 1 CCCGCCGGCG 0.912968 -128 GCTGGCGGCAGGCCTGGTCCTACAAACCGT 44 123 0 GGCCTGGTCC 0.687769 -92 GACCAGGCCTGCCGCCAGCCTGATCGAGGG 44 134 1 GCCGCCAGCC 0.739906 -81 CAAACATCCAGCCCGGACCGGGCCAAAACC 44 185 0 GCCCGGACCG 0.795231 -30 ATCGAGGAACCGCGTGAGCGGGTCAGCGGC 45 11 1 CGCGTGAGCG 0.627098 -97 GCGTGAGCGGGTCAGCGGCGCGACGCTTAA 45 22 1 GTCAGCGGCG 0.952535 -86 GGAGCGTATCGCCCGCGGCGGCACCGCGTC 46 11 0 GCCCGCGGCG 0.93959 -226 CCACATGGCCGTCCTCCTCGTTGACGGTCG 46 40 0 GTCCTCCTCG 0.671373 -197 CGCCGCGGCCAGCATCTCCGGGTTCACCAA 46 76 0 AGCATCTCCG 0.536327 -161 CGGAGATGCTGGCCGCGGCGGCGACAGACT 46 86 1 GGCCGCGGCG 0.505983 -151 CAGGTCAGGGATCAGCGCCGCCTATGCGCG 46 126 1 ATCAGCGCCG 0.872086 -111 GCCTATGCGCGTCCTCTGCGGTGACCTGGC 46 145 1 GTCCTCTGCG 0.731607 -92 CGAGTTCTCTGGCAGCACCCGGTGTCGATA 46 195 0 GGCAGCACCC 0.905802 -42 GGCGGTAAGCGTCAACCGCGCGG 48 4 0 GTCAACCGCG 0.75768 -42 AATCGTGGCGGTCAGCGGCGGTAAGCGTCA 48 20 0 GTCAGCGGCG 0.952535 -26 TAACTGGTTCGGCCGCACCGTCATGGCCGC 49 16 0 GGCCGCACCG 0.966195 -190 ACCAGTTATTGCCAACTCCGACTCCGATAT 49 38 1 GCCAACTCCG 0.687093 -168 TGGACGCGCACCCGGCGGCGCACACTGGCC 49 101 1 CCCGGCGGCG 0.93583 -105 CCTCCACGATGGCGGCACCGTTGATCACGA 49 164 1 GGCGGCACCG 0.970306 -42 CTCAGCTGCCTCCGATTGAA 51 1 1 CTCAGCTGCC 0.523719 -214 ATCACTGGCCGTCAGCAGCCGTCCACTAGC 51 44 1 GTCAGCAGCC 0.768239 -171 CCTGACCATCCCCCCGGTCGCTGCTAGTTC 51 181 0 CCCCCGGTCG 0.574494 -34 GGCACCCTCCTTACCCTGAC 51 205 0 GGCACCCTCC 0.647044 -10 GGTTGCCACGGCCGCCACCTCTTT 52 60 0 GCCACGGCCG 0.779785 -14 AACGTGTTCTAGCCTGGCCCC 53 2 0 AGCCTGGCCC 0.590205 -110 AGTAAAACATGCCTTCACCGCAGACAAAAG 53 65 0 GCCTTCACCG 0.476998 -47 GTACCCCCACCGCATCGTCGTCGACACGGG 56 16 0 CGCATCGTCG 0.848417 -49 AACCGCTCCTCTCCCGTTGCCAGTG 56 50 0 CTCCTCTCCC 0.453591 -15 ACGCTAGGCACTCTCCGCCGATACCCCAGA 57 81 1 CTCTCCGCCG 0.677711 -220 TTGCCCGCACAGCCCGGCCCAGGTGCAGGA 57 143 0 AGCCCGGCCC 0.648093 -158 ATCCAGCGCCAGCAACGTCGCATCTAATGC 57 180 1 AGCAACGTCG 0.747767 -121 CGCTTGCTCGGCCAGCTGCGACCTCGATGG 57 260 0 GCCAGCTGCG 0.814051 -41 ********** Masking position 3 Map Score: 131.85 Number of sites scoring better than the average of aligned sites = 129854 Number in coding regions = 122576 Number in noncoding regions = 7278 Number of orfs with sites within 600 bp upstream = 1672 Fraction of orfs with sites within 600 bp upstream = 0.268551 Motif number 2 CGATCACCGCCGCTGTGCGGCGAGGAGATC 1 75 1 CGCTGTGCGG 0.911799 -27 CACATCACTACGCTTCGGGGCCGCCGGTTA 2 19 0 CGCTTCGGGG 0.686805 -70 GGGCGCGGGTTGTCGCCCCGTTGACACCCG 5 14 1 TGTCGCCCCG 0.799437 -61 CCAAAGCCATCGCTGTACCGAGGCGAAATT 6 32 0 CGCTGTACCG 0.37243 -61 CCTTCCGTATCGTGTGGGGGTCGGGCGCGC 9 114 0 CGTGTGGGGG 0.477155 -28 CAACGAGTGGCGTCTCCCCGGTAGGGTTCG 10 35 0 CGTCTCCCCG 0.765638 -266 TCGAATTTCCCGTCGGGCCGCTCATGTTTC 10 218 0 CGTCGGGCCG 0.900937 -83 GCCACCAGGCCGCCGAGCTGTCTGGGCATC 10 246 0 CGCCGAGCTG 0.815002 -55 CACGGATCGACGTCCTGCGGATCCGG 11 7 0 CGTCCTGCGG 0.949587 -268 ATTTCGGCAACGGCCTGCGGACTTTTTGCA 11 112 0 CGGCCTGCGG 0.916723 -163 GCCCTACCGTCGTCCAGGCGGTGTCAACGG 11 214 0 CGTCCAGGCG 0.78202 -61 AAAACGCTGACGCCCTACCGTCGTCCAGGC 11 225 0 CGCCCTACCG 0.693965 -50 GGGCGGGCTCCGTCGGCGTGTCGTCGCCGT 13 28 1 CGTCGGCGTG 0.519255 -54 GACTACGCGCTGCTCCGGGGAAACGTATCC 14 51 1 TGCTCCGGGG 0.679384 -144 AAACACTTTATGCGCCGGGGCCCACGAATA 14 90 1 TGCGCCGGGG 0.746006 -105 GGCAGCATCCCGTGCCGCGGCTGGCCGGAC 14 125 1 CGTGCCGCGG 0.94669 -70 CCTCGGATCACGTCCGGCCAGCCGCGGCAC 14 136 0 CGTCCGGCCA 0.344526 -59 CAACGGTAGGTGCCGCGGGGCTTGAAG 15 8 0 TGCCGCGGGG 0.930374 -24 GGGGCCACGTCGCGTCGCGGACAGTCCCAT 17 73 0 CGCGTCGCGG 0.875181 -129 CGGCGCGCATCGTCGCCCGGATAGGCTCGA 19 16 0 CGTCGCCCGG 0.976141 -141 GGCAAGGTATCGCTGCGGCGCGCATCGTCG 19 31 0 CGCTGCGGCG 0.512666 -126 ACCAACAGGTTGGCCGGGGGCCCTGTTAGG 19 63 1 TGGCCGGGGG 0.660195 -94 GCAAAGCACCCGGCGTCCCGTAGCGAAACG 21 32 1 CGGCGTCCCG 0.700723 -166 CAATGGACGGCGCAGACCGGGCCGCTTCGA 21 72 1 CGCAGACCGG 0.43132 -126 TACTACTGATCGTTGAGCGGATGTTCGCAC 22 47 0 CGTTGAGCGG 0.803977 -140 CGGATGACAACGCTGGCCGGGAACCCGGGC 22 78 0 CGCTGGCCGG 0.925712 -109 CGCCCAGCGGTGCCCGCGGGGGCTAAGGTT 22 119 0 TGCCCGCGGG 0.791044 -68 GATCGTGGCTCGCCCAGCGGTGCCCGCGGG 22 129 0 CGCCCAGCGG 0.973019 -58 GACGGCTCCCGGCATGGACAAG 23 41 0 CGGCTCCCGG 0.769965 -12 GCCTTCAACACGTCGCGCGGCGAAATGACA 24 21 1 CGTCGCGCGG 0.987909 -280 ACGCCGTCACCGAGCTGCGGCGACATGATC 25 31 1 CGAGCTGCGG 0.458457 -73 TTGCGCCGCGGAGCCCGGCAC 26 2 1 TGCGCCGCGG 0.87372 -299 GCACTGCTGGCGGTGCCGGGCTCCGCGGCG 26 14 0 CGGTGCCGGG 0.657512 -287 CCGCCAGCAGTGCCTCGCGGATGCCCTGAT 26 31 1 TGCCTCGCGG 0.820724 -270 GTATTGCGGTCGCCGACCTGGACGTTGCCA 26 118 0 CGCCGACCTG 0.688227 -183 TGGCTATCTGCGTGGCGCGGTGGTTTCTCG 27 13 0 CGTGGCGCGG 0.956498 -116 CCAGGGGCGCCGTCGGACGGAAAGTGATCC 30 85 1 CGTCGGACGG 0.851394 -154 TTTTTGAGATCGTCCCGCGACCTGTTGTCT 30 115 0 CGTCCCGCGA 0.569311 -124 ACGTTCGAGTCGTGCCGGGGGCACTGTGGA 33 188 1 CGTGCCGGGG 0.882906 -113 GGTCCCTAGACGCACCGCGGGGGCAATGGT 34 11 1 CGCACCGCGG 0.828104 -72 CTGCCACGACCGCCACCCCGCACCTGCGTA 36 22 1 CGCCACCCCG 0.411867 -31 TGCGGGACATAGCCGGCCGGCCCGGTCGAT 37 25 0 AGCCGGCCGG 0.705064 -149 CCTGGCGGGTCGCTGTGCGGGACATAGCCG 37 40 0 CGCTGTGCGG 0.911799 -134 GCACCGGCCACGCCTGGCGGGTCGCTGTGC 37 52 0 CGCCTGGCGG 0.943801 -122 CACCGTCGGTTGCCGCACCGGCCACGCCTG 37 66 0 TGCCGCACCG 0.626334 -108 CCGCAACCGACGCCGCCCGGACCGTCAATC 37 99 1 CGCCGCCCGG 0.981585 -75 GCCGCTAGCGAGCCCGGCGGGGGCGGCTGC 37 151 0 AGCCCGGCGG 0.796999 -23 GTGCCACCGTTGCCGTCCCGGACCGCATCC 39 63 0 TGCCGTCCCG 0.721659 -139 ACACGGCCTACGTCGCACGGCGATGGGCCG 39 101 1 CGTCGCACGG 0.892258 -101 CGTCGCACGGCGATGGGCCGCTGTTCAATT 39 111 1 CGATGGGCCG 0.517271 -91 CTGCTGATCGTGCCGGAGCGAATTCGC 42 8 0 TGCCGGAGCG 0.323029 -293 CGAAACACACCGTCGGGCTGGCTTCGCTAA 42 67 0 CGTCGGGCTG 0.837898 -234 CGGAATCGTCAGCCGCGGCGTCAGCGCTGG 42 112 0 AGCCGCGGCG 0.574825 -189 AGCAGACGGCTGCGCTGCCGCTTTCATACG 42 253 0 TGCGCTGCCG 0.529479 -48 GAACGCGTGCTGTCCGGCGGG 44 2 0 TGTCCGGCGG 0.886177 -213 GGACAGCACGCGTTCGACGGTAGCACTCGG 44 17 1 CGTTCGACGG 0.46743 -198 CGGTAGCACTCGGCCAGCCGTCGACCCCGA 44 34 1 CGGCCAGCCG 0.517505 -181 CAACGCTTTCCGCCCGCGCGAATCGGGGTC 44 56 0 CGCCCGCGCG 0.510211 -159 TGGTCTGCAACGGCCCGCCGGCGGAGTCTG 44 84 1 CGGCCCGCCG 0.500719 -131 GCCGCTGACCCGCTCACGCGGTTCCTCGAT 45 11 0 CGCTCACGCG 0.441162 -97 GAAGTTTAAGCGTCGCGCCGCTGACCCGCT 45 27 0 CGTCGCGCCG 0.894934 -81 TGCGCCTCCTGTCGGGCTGATTCTTCGTC 45 89 0 TGTCGGGCTG 0.46362 -19 GACGCGGTGCCGCCGCGGGCGA 46 3 1 CGCGGTGCCG 0.800358 -234 CCAAGTCTGTCGCCGCCGCGGCCAGCATCT 46 89 0 CGCCGCCGCG 0.507054 -148 CTGTCGATACCGTCCGGGGGAAGGGCTTGC 47 40 0 CGTCCGGGGG 0.951413 -34 TCAATCGTGGCGGTCAGCGGCGGTAAGCGT 48 22 0 CGGTCAGCGG 0.661672 -24 TGAAGCCTACCGTGGACGCGCACCCGGCGG 49 89 1 CGTGGACGCG 0.406714 -117 GGCCAGTGTGCGCCGCCGGGTGCGCGTCCA 49 101 0 CGCCGCCGGG 0.946108 -105 GCAACCCGGCCGTCTTCCCGGTTGTAACAC 51 95 1 CGTCTTCCCG 0.484814 -120 GAACTAGCAGCGACCGGGGGGATGGTCAGG 51 181 1 CGACCGGGGG 0.771003 -34 TCGACGACGATGCGGTGGGGGTACCACTCA 56 22 1 TGCGGTGGGG 0.505178 -43 TAGGCTATGACGACGCGCGGAAGAATATGC 57 29 1 CGACGCGCGG 0.934092 -272 ATGCGCCCTTCGCTCACCGGGGCATTAGAT 57 201 0 CGCTCACCGG 0.791157 -100 AGCGCTTGCTCGGCCAGCTGCGACCTCGAT 57 262 0 CGGCCAGCTG 0.476926 -39 ********** Masking position 2 Map Score: 91.1063 Number of sites scoring better than the average of aligned sites = 45622 Number in coding regions = 42270 Number in noncoding regions = 3352 Number of orfs with sites within 600 bp upstream = 1264 Fraction of orfs with sites within 600 bp upstream = 0.20302 Motif number 3 GCGATCCTAGTCACCCGGTTGAACCAGCAA 4 64 0 TCACCCGGTT 0.439911 -31 GCGCGGGTTGTCGCCCCGTTGACACCCGAC 5 16 1 TCGCCCCGTT 0.73992 -59 GACCATACAATTGGCCGGCGT 7 2 0 TTGGCCGGCG 0.529788 -42 GGCCTCATACTCGTCCGGTGTTTCGTG 8 8 0 TCGTCCGGTG 0.666534 -23 GGGTTCGTCCTCACGCGGCGGCTTGTTGAA 10 12 0 TCACGCGGCG 0.895568 -289 ATGTTTCCACTCCTCCGGTTCAACTGATCC 10 195 0 TCCTCCGGTT 0.434474 -106 GAATTTCCCGTCGGGCCGCTCATGTTTCCA 10 216 0 TCGGGCCGCT 0.850836 -85 CGGATCGACGTCCTGCGGATCCGG 11 5 0 TCCTGCGGAT 0.213681 -270 ACCAGTGAAGCTGCGCCGTTGACACCGCCT 11 199 1 CTGCGCCGTT 0.248323 -76 CTACCGTCGTCCAGGCGGTGTCAACGGCGC 11 211 0 CCAGGCGGTG 0.380673 -64 AATTTGCTGCTGGTGCGGAGGATTAGGCA 14 10 0 TGGTGCGGAG 0.262249 -185 CGTATTCGTGGGCCCCGGCGCATAAAGTGT 14 92 0 GGCCCCGGCG 0.40348 -103 CAGCATCCCGTGCCGCGGCTGGCCGGACGT 14 127 1 TGCCGCGGCT 0.939334 -68 ACGGTAGGTGCCGCGGGGCTTGAAG 15 6 0 CCGCGGGGCT 0.872577 -26 CTGGCTTGCCTCCTGCCGCGACCATCCGAT 17 22 0 TCCTGCCGCG 0.760245 -180 AGGGGCCACGTCGCGTCGCGGACAGTCCCA 17 74 0 TCGCGTCGCG 0.695877 -128 GCGCGCATCGTCGCCCGGATAGGCTCGACC 19 14 0 TCGCCCGGAT 0.604369 -143 GGCAAGGTATCGCTGCGGCGCGCATCGTCG 19 31 0 CGCTGCGGCG 0.607891 -126 ACGGCGCAGACCGGGCCGCTTCGACTCAGG 21 78 1 CCGGGCCGCT 0.83104 -120 CAGCGGTGCCCGCGGGGGCTAAGGTTTATC 22 115 0 CGCGGGGGCT 0.390722 -72 AGATCGTGGCTCGCCCAGCGGTGCCCGCGG 22 130 0 TCGCCCAGCG 0.485121 -57 CTTCAACACGTCGCGCGGCGAAATGACAAC 24 23 1 TCGCGCGGCG 0.987978 -278 CAAGCTAAGTTCGCGGGGTTGGCTGAGCCA 24 149 0 TCGCGGGGTT 0.680984 -152 TTGCGCCGCGGAGCCCGGCA 26 1 1 TTGCGCCGCG 0.705914 -300 GCTATCTGCGTGGCGCGGTGGTTTCTCGCG 27 11 0 TGGCGCGGTG 0.917394 -118 GTTTTTGAGATCGTCCCGCGACCTGTTGTC 30 116 0 TCGTCCCGCG 0.737571 -123 GAAGACGGTTTTGCGCGGTGTAACAGATTA 30 200 0 TTGCGCGGTG 0.630607 -39 AACCAATAATTGACGTGGCGGTAGACCTTT 33 44 1 TGACGTGGCG 0.241027 -257 GTCAGCATGGTGGCGTGGCTTGACACCGCC 33 226 1 TGGCGTGGCT 0.643791 -75 ATACCATTGCCCCCGCGGTGCGTCTAGGGA 34 13 0 CCCCGCGGTG 0.919965 -70 GGTTCCTCCGCCTGGTGCCTACCGCAT 35 99 0 CCGCCTGGTG 0.446007 -17 ATCGACCGGGCCGGCCGGCTATGTCCCGCA 37 25 1 CCGGCCGGCT 0.881887 -149 GATTGACGGTCCGGGCGGCGTCGGTTGCGG 37 99 0 CCGGGCGGCG 0.956215 -75 ACGCCATGGCTCCGGCGGCTTGATTGACGG 37 120 0 TCCGGCGGCT 0.907141 -54 GCAGCCGCCCCCGCCGGGCTCGCTAGCGGC 37 151 1 CCGCCGGGCT 0.797118 -23 TCCAACCGAATCGCCCGGCTCCTCCTCACC 39 14 0 TCGCCCGGCT 0.965522 -188 ACGGCCTACGTCGCACGGCGATGGGCCGCT 39 103 1 TCGCACGGCG 0.652239 -99 GCGAAACACACCGTCGGGCTGGCTTCGCTA 42 68 0 CCGTCGGGCT 0.382521 -233 CCAGCGCTGACGCCGCGGCTGACGATTCCG 42 112 1 CGCCGCGGCT 0.787497 -189 CCTTAACGAATCGCGTCGCGAGCCCGGGCA 42 193 1 TCGCGTCGCG 0.695877 -108 GTCTGTACCTTGCCCGGGCTCGCGACGCGA 42 203 0 TGCCCGGGCT 0.597164 -98 CAGACGGCTGCGCTGCCGCTTTCATACGAA 42 251 0 CGCTGCCGCT 0.448798 -50 ACCAACGCTTTCCGCCCGCGCGAATCGGGG 44 58 0 TCCGCCCGCG 0.781065 -157 AATGCCAGACTCCGCCGGCGGGCCGTTGCA 44 89 0 TCCGCCGGCG 0.904168 -126 TACTGGGTTTTGGCCCGGTCCGGGCTGGAT 44 180 1 TGGCCCGGTC 0.212014 -35 GCTGACCCGCTCACGCGGTTCCTCGAT 45 8 0 TCACGCGGTT 0.577874 -100 AGTTTAAGCGTCGCGCCGCTGACCCGCTCA 45 25 0 TCGCGCCGCT 0.94858 -83 GACGCGGTGCCGCCGCGGGCGATACGC 46 8 1 TGCCGCCGCG 0.870264 -229 CCAAGTCTGTCGCCGCCGCGGCCAGCATCT 46 89 0 CGCCGCCGCG 0.499258 -148 TGCCGACCTGTGCCGCGTCTCGAGTTCTCT 46 215 0 TGCCGCGTCT 0.29323 -22 CCGCGCGGTTGACGCTTACC 48 1 1 CCGCGCGGTT 0.918785 -45 GGTTGACGCTTACCGCCGCTGACCGCCACG 48 17 1 TACCGCCGCT 0.218985 -29 TGGACGCGCACCCGGCGGCGCACACTGGCC 49 101 1 CCCGGCGGCG 0.896057 -105 ACCGGGAAGACGGCCGGGTTGCCGTTGGCG 51 87 0 CGGCCGGGTT 0.346821 -128 GCATATTCTTCCGCGCGTCGTCATAGCCTA 57 29 0 CCGCGCGTCG 0.649316 -272 TCGCATCTAATGCCCCGGTGAGCGAAGGGC 57 197 1 TGCCCCGGTG 0.803963 -104 ********** Masking position 8 Map Score: 61.049 Number of sites scoring better than the average of aligned sites = 36610 Number in coding regions = 33841 Number in noncoding regions = 2769 Number of orfs with sites within 600 bp upstream = 1157 Fraction of orfs with sites within 600 bp upstream = 0.185834 Motif number 4 CCAGACCTGGGCCATGGTTGCGCTGCTGATC 1 37 0 GCCATGGTGC 0.827551 -65 CGGTCCAGTATGCGTCGGCGCAA 6 3 1 GTCCAGTTGC 0.614405 -90 AACGAGGATCGGGATGGTGGCCTG 6 79 1 GGGATGGGGC 0.310008 -14 GAAATTCGATGCCCAGACAGCTCGGCGGCCT 10 239 1 GCCCAGAAGC 0.840117 -62 ACAGCTCGGCGGCCTGGTGGCCAGGATCGTT 10 255 1 GGCCTGGGGC 0.947278 -46 GACGGAGCCCGCCCTGAGTGCACGTTCGAAG 13 11 0 GCCCTGATGC 0.958036 -71 GCAGGAGGCAAGCCAGTCTGCTAAACATGCA 17 36 1 AGCCAGTTGC 0.200529 -166 CGGGTTGACAGCGCAGAAAGGAAGCC 18 15 1 GCGCAGAAGG 0.326219 -16 GCGCATCGTCGCCCGGATAGGCTCGACCGCC 19 11 0 GCCCGGAAGG 0.709679 -146 TTGGCCGGGGGCCCTGTTAGGGTGCCGGTAC 19 72 1 GCCCTGTAGG 0.787448 -85 AGTCGAAGCGGCCCGGTCTGCGCCGTCCATT 21 73 0 GCCCGGTTGC 0.954594 -125 GGTTAGCACTGCCCTGTTTCGCGACGGAGAT 21 113 0 GCCCTGTTCG 0.74306 -85 GAATCGCATGGCCCTGACTGTGGTGCC 21 181 1 GCCCTGATGT 0.698839 -17 TCAGTAGTAGGCCCGGGTTCCCGGCCAGCGT 22 68 1 GCCCGGGTCC 0.922578 -119 GGAAGTGTTGGGCATGACTGCACCCAGTAAG 24 71 0 GGCATGATGC 0.6223 -230 CCTCGCGGATGCCCTGATCGTCGTTGATTTC 26 43 1 GCCCTGACGT 0.426731 -258 ACGTGATCGAGTCCAGTTACCAACGAGGTAG 26 150 1 GTCCAGTACC 0.159059 -151 CGAACTAGCTGGCAAGGTGGCCGACCTCGCG 27 63 0 GGCAAGGGGC 0.500534 -66 CAACAAAACGGGCCTGTAAGCTATGTTTTTG 30 139 0 GGCCTGTAGC 0.888184 -100 ATGGGTCGACGCCCAGAGTCGCCTTCAAACT 33 261 1 GCCCAGATCG 0.590049 -40 TTGGCCTGTGGCCCATCGACCGG 37 3 1 GGCCTGTGCC 0.740902 -171 CGCCAGGCGTGGCCGGTGCGGCAACCGACGG 37 63 1 GGCCGGTCGG 0.640352 -111 TTGATTGACGGTCCGGGCGGCGTCGGTTGCG 37 100 0 GTCCGGGGGC 0.65086 -74 CGGCTGCGACGCCATGGCTCCGGCGGCTTGA 37 127 0 GCCATGGTCC 0.593626 -47 CCTACATTGAGGCCAGGCTCCAACCGAATCG 39 31 0 GGCCAGGTCC 0.871174 -171 AGGCCGTGTAGCCCAGTGTGCCACCGTTGCC 39 79 0 GCCCAGTTGC 0.940471 -123 AATTCGGAAGGGGCTGTCAGCTGTTGCGGTC 39 137 1 GGGCTGTAGC 0.675932 -65 CGCGGCGTCAGCGCTGGCTGCAGCCCCATTC 42 98 0 GCGCTGGTGC 0.929764 -203 TCTGTACCTTGCCCGGGCTCGCGACGCGATT 42 201 0 GCCCGGGTCG 0.807002 -100 CGATTCGCGCGGGCGGAAAGCGTTGGTCTGC 44 61 1 GGGCGGAAGC 0.579167 -154 GGCCCGGTCCGGGCTGGATGTTTGGAGGAGT 44 191 1 GGGCTGGTGT 0.501135 -24 CGCATAGGCGGCGCTGATCCCTGACCTGATG 46 123 0 GCGCTGACCC 0.370794 -114 CCTCTGCGGTGACCTGGCTGGTAGCTTAGGC 46 157 1 GACCTGGTGG 0.412968 -80 GCCACATTGCGGCCAGTGTGCGCCGCCGGGT 49 110 0 GGCCAGTTGC 0.922602 -96 CCGGGAAGACGGCCGGGTTGCCGTTGGCGTT 51 85 0 GGCCGGGTGC 0.967161 -130 CCGCCAGAATGCCCAGAACGCTAGGCACTCT 57 64 1 GCCCAGACGC 0.812055 -237 CCTGCACCTGGGCCGGGCTGTGCGGGCAAGG 57 144 1 GGCCGGGTGT 0.748149 -157 GACGTTGCTGGCGCTGGATGGACGCCTTGCC 57 168 0 GCGCTGGTGG 0.822856 -133 GCCCTGTAGGCTAACCTACCA 58 37 0 GCCCTGTGGC 0.927541 -11 ******* *** Masking position 6 Map Score: 34.1937 Number of sites scoring better than the average of aligned sites = 14654 Number in coding regions = 13655 Number in noncoding regions = 999 Number of orfs with sites within 600 bp upstream = 681 Fraction of orfs with sites within 600 bp upstream = 0.10938 Motif number 5 CGAGCGCATCCGACTGACCTTATAT 4 2 1 GAGCACCGCT 0.693412 -93 GTATGCGTCGGCGCAATTTCGCCTCGGTACAGCG 6 18 1 GCGCTTCGCT 0.816885 -75 ACTGGCCTCATACTCGTCCGGTGTTTCGT 8 12 0 CCTCATCGCC 0.754926 -19 TGGCCCTCAACGGCCGATCCCCCGAACTGATCAA 9 22 0 CGGCACCCCG 0.748972 -120 CTTCACTGGTGTGCTAACTCGACCATGGCACAGC 11 175 0 GTGCATCGCC 0.851118 -100 GAAAACGCTGACGCCCTACCGTCGTCCAGGCGGT 11 222 0 ACGCTCCGCG 0.784452 -53 CCGCAAAAGGGTGCTTTTGCGTCTGCTCGGCAGA 12 11 0 GTGCTGCGCT 0.335465 -71 CGCAAAAGTGGCGCTTTTGCGTCTGCTCGCGCAT 12 45 1 GCGCTGCGCT 0.773682 -37 CACTCAGGGCGGGCTCCGTCGGCGTGTCGTCGCC 13 22 1 GGGCCTCGCG 0.804295 -60 GTCGCCGTAGGTGCACACTCGACGAGAACAGATA 13 50 1 GTGCATCGCG 0.857774 -32 CCCCGGAGCAGCGCGTAGTCAGCGCTCGTGAAAT 14 37 0 GCGCATCACG 0.496987 -158 ATCCGCAAGGCCGCTACACCGTCCTGACCGATGC 17 107 0 CCGCCCCGCC 0.949842 -95 TCGCTGCGGCGCGCATCGTCGCCCGGATAGGCTC 19 18 0 GCGCCTCGCC 0.925705 -139 GGGACGCCGGGTGCTTTGCCGGCCCCAGGAGGTC 21 17 0 GTGCTCCGCC 0.863487 -181 CCAATGGACGGCGCAGACCGGGCCGCTTCGACTC 21 71 1 GCGCACGGCC 0.826153 -127 GTGGCTCGCCCAGCGGTGCCCGCGGGGGCTAAGG 22 121 0 CAGCTCCCCG 0.31417 -66 GCCTCTGGCTCAGCCAACCCCGCGAACTTAGCTT 24 144 1 CAGCACCCCG 0.494712 -157 TCCACGAAATCGGCACAACCGTCCTAAACTGATC 24 263 1 CGGCACCGCC 0.948021 -38 AGGTCGGCGACCGCAATACCGACGTGATCGAGTC 26 129 1 CCGCTCCGCG 0.966706 -172 GGTCGGCATACCGCCGATTCGTCCAGACGG 29 7 0 CCGCATCGCC 0.961216 -69 CTGTTACACCGCGCAAAACCGTCTTCACAGTGTT 30 204 1 GCGCACCGCT 0.957536 -35 CCGCGGACTCGGCCAGAACAACCA 31 1 1 CCGCATCGCC 0.961314 -75 AAACTGACCTGCGCATCGCCTCCGTAGCTCAGGT 33 120 1 GCGCCCCTCG 0.752973 -181 ACCGCAGAGCCTCCTAGCATTTCAG 34 68 0 CCGCACCTCT 0.586969 -15 TCGCTGTGCGGGACATAGCCGGCCGGCCCGGTCG 37 27 0 GGACACCGCC 0.388437 -147 GTCCGGGCGGCGTCGGTTGCGGCCCCACCGTCGG 37 87 0 CGTCTGCGCC 0.233782 -87 GGAGCCATGGCGTCGCAGCCGCCCCCGCCGGGCT 37 137 1 CGTCACCGCC 0.442823 -37 CCCCCGCCGGGCTCGCTAGCGGCGAA 37 158 1 GCTCTGCGCG 0.64443 -16 TGAGCACCGTCTTCGATGTCGACCTGCTGATCGT 42 27 0 CTTCTTCGCC 0.175094 -274 GCTGCAGCCAGCGCTGACGCCGCGGCTGACGATT 42 105 1 GCGCAGCCCG 0.830326 -196 ATGAAAGCGGCAGCGCAGCCGTCTGCTCTCTGCC 42 256 1 CAGCACCGCT 0.593731 -45 GCAGCCGTCTGCTCTCTGCCGTCCATAGCTGAAG 42 270 1 GCTCTCCGCC 0.841343 -31 AAGCGTCGCGCCGCTGACCCGCTCACGCGGTTCC 45 16 0 CCGCACCGTC 0.522403 -92 GCCTCCTGTCGGGCTGATTCTTCGTCTCTAAGAG 45 81 0 GGGCATCTCG 0.556022 -27 GACGCGGTGCCGCCGCGGGCGATAC 46 2 1 ACGCTCCGCG 0.779493 -235 CGCAGAGGACGCGCATAGGCGGCGCTGATCCCTG 46 131 0 GCGCAGCGCG 0.969035 -106 CGATAAAGACGTGCCTAAGCTACCAGCCAGGTCA 46 166 0 GTGCAGCTCC 0.30047 -71 CCTACCGTGGACGCGCACCCGGCGGCGCACACTG 49 94 1 ACGCACCGCG 0.886082 -112 GCACCCGGCGGCGCACACTGGCCGCAATGTGGCA 49 108 1 GCGCATGGCG 0.679486 -98 TTCTTGACAAGCTCACACCCGACGGGCAGAAAGA 52 31 1 GCTCACCGCG 0.92282 -43 GGTACCCCCACCGCATCGTCGTCGACACGGGGCA 56 13 0 CCGCCTCGCG 0.894164 -52 CTGGCGGATTGCGCATATTCTTCCGCGCGTCGTC 57 37 0 GCGCATCTCC 0.791501 -264 GGTGAGCGAAGGGCGCATCCCTCGTACCGAATTC 57 213 1 GGGCACCCCG 0.824795 -88 TATCAACCAAGCGCTTGCTCGGCCAGCTGCGACC 57 267 0 GCGCGTCGCC 0.740728 -34 **** * *** ** Masking position 4 Map Score: 55.5532 Number of sites scoring better than the average of aligned sites = 20489 Number in coding regions = 19182 Number in noncoding regions = 1307 Number of orfs with sites within 600 bp upstream = 814 Fraction of orfs with sites within 600 bp upstream = 0.130742 Motif number 6 GTCGGATAGCGCTGGCCAACTCTGGG 1 3 0 GCTGCCATCG 0.941894 -99 GGATCTCCTCGCCGCACAGCGGCGGTGATCGCGT 1 72 0 GCCGACAGGG 0.921704 -30 ACGCCGGCCAATTGTATGGTCGCCCT 7 3 1 GCCGCCATGA 0.49913 -41 TGTTTTCTCCGTTGATCAGTTCGGGGGATCGGCC 9 11 1 GTTGTCATCG 0.562793 -131 TCGACCACAGGCTGGTCGAAGCGGCTCTGGATCG 10 158 0 GCTGTCGGCG 0.752072 -143 GGCGCTGACCTCCTGGGGCCGGCAAAG 21 4 1 GCTGCCTTGG 0.793872 -194 CCCGGTCTGCGCCGTCCATTGGAGTAGAGTCCGT 21 59 0 GCCGCCAGGG 0.988782 -139 GGCCCGGGTTCCCGGCCAGCGTTGTCATCCGGGT 22 77 1 CCCGCCAGTG 0.644962 -110 TAGATCGTGGCTCGCCCAGCGGTGCCCGCGGGGG 22 127 0 CTCGCCAGGG 0.826725 -60 CCGTCACGGTGTGGACCAAATGTGGTATCGAATC 24 213 0 GTGGCCATGG 0.579818 -88 TGCTGGCGGTGCCGGGCTCCGCGGCGCAA 26 6 0 GCCGGCTGCG 0.851682 -295 GGTAACTGGACTCGATCACGTCGGTATTGCGGTC 26 137 0 CTCGTCATCG 0.58147 -164 GCTTCTCCGGGTCGGTCAGATCGGCTTTCGGGTG 26 249 1 GTCGTCATCG 0.804056 -52 GCGGGTCTCGGGCGTCAAATTCCG 28 57 0 GCGGTCTGGG 0.767676 -14 AGATTCCCTCGCCGGTCAGAGGGGGTCCAGCAGG 30 36 1 GCCGTCAGGG 0.977669 -203 CACGACTCATGCTGGACACTTCGGTTAATCGTCA 35 24 1 GCTGACATCG 0.684039 -92 GGGTCGCTGTGCGGGACATAGCCGGCCGGCCCGG 37 30 0 GCGGACAGCG 0.789011 -144 GCGATGGGCCGCTGTTCAATTCGGAAGGGGCTGT 39 120 1 GCTGTCATCG 0.889521 -82 GTTAAGGTCTCACGACCATAGCAGGTACGGGCCA 42 166 0 CACGCCAGCG 0.577349 -135 TCTGCTCTCTGCCGTCCATAGCTGAAGGAAGACC 42 277 1 GCCGCCAGCG 0.991841 -24 TGGGTTTTGGCCCGGTCCGGGCTGGATGTTTGGA 44 183 1 CCCGTCCGCG 0.640159 -32 AACCGCGTGAGCGGGTCAGCGGCGCGACGCTTAA 45 18 1 GCGGTCAGGG 0.909786 -90 AAACCACATGGCCGTCCTCCTCGTTGACGGTCGG 46 39 0 GCCGCCTTCT 0.310483 -198 ACCCGGAGATGCTGGCCGCGGCGGCGACAGACTT 46 83 1 GCTGCCGGCG 0.859298 -154 CTGACCTGATGCCGCCCAAGTCTGTCGCCGCCGC 46 100 0 GCCGCCATCG 0.981015 -137 AAGCTACCAGCCAGGTCACCGCAGAGGACGCGCA 46 150 0 CCAGTCAGCG 0.474321 -87 GGTGCCGACCTGTGCCGCGTCTCGAGT 46 220 0 GCCGCCTGCG 0.975508 -17 GGTCAATCGTGGCGGTCAGCGGCGGTAAGCGTCA 48 20 0 GGCGTCAGGG 0.682918 -26 TAGCTGTCCTAGTGAGGACCTTCTGC 53 96 0 GCTGCCTTGG 0.793872 -16 GGGCTTGGTACCTGATCACGGGAGACATCTGGGG 57 104 0 CCTGTCAGGG 0.823005 -197 CTGCACCTGGGCCGGGCTGTGCGGGCAAGGCGTC 57 145 1 GCCGGCTGCG 0.851682 -156 CAAGCGCTTGCTCGGCCAGCTGCGACCTCGATGG 57 260 0 CTCGCCATGG 0.669776 -41 **** *** ** * Masking position 7 Map Score: 36.2771 Number of sites scoring better than the average of aligned sites = 12129 Number in coding regions = 11399 Number in noncoding regions = 730 Number of orfs with sites within 600 bp upstream = 547 Fraction of orfs with sites within 600 bp upstream = 0.0878574 Motif number 7 TGCTGATCGTCGGATAGCGCTGGCCAACTCTGG 1 12 0 CGGACGCTGG 0.892484 -90 CACGAAACACCGGACGAGTATGAG 8 2 1 ACGAACCGGA 0.228901 -29 CCCTCAACGGCCGATCCCCCGAACTGATCAACG 9 20 0 CCGACCCGAA 0.455686 -122 CCGGATCCGCAGGACGTCGATCC 11 1 1 CCGGCGCAGG 0.79699 -274 TCTTTCATTGCCGAAAACGCTGACGCCCTACCG 11 235 0 CCGACGCTGA 0.957471 -40 CTTGTGGGATACGTTTCCCCGGAGCAGCGCGTA 14 54 0 ACGTCCCGGA 0.624785 -141 ATGCTGCCGTCCGTATTCGTGGGCCCCGGCGCA 14 100 0 CCGTCGTGGG 0.914127 -95 CCGCGACCATCCGATAGCTTGGACAT 17 4 0 CCGACTTGGA 0.577874 -198 ACCGTCCTGACCGATGCACCAGGGGCCACGTCG 17 91 0 CCGAACCAGG 0.517458 -111 GGTAGCGTCGCCGATCCCAAGGGAGGAATCGCA 21 156 1 CCGACAAGGG 0.389276 -42 ACAACGCTGGCCGGGAACCCGGGCCTACTACTG 22 69 0 CCGGCCCGGG 0.902591 -118 GCTCGCCCAGCGGTGCCCGCGGGGGCTAAGGTT 22 119 0 CGGTCGCGGG 0.919763 -68 GACGGTTGTGCCGATTTCGTGGATAGCTGACGA 24 253 0 CCGACGTGGA 0.928312 -48 GAGTGGTATCACGACCACCTTGGCATGATCCTG 26 83 0 ACGACCTTGG 0.292241 -218 CTCTTCTACACCGAACTAGCTGGCAAGGTGGCC 27 72 0 CCGAAGCTGG 0.767428 -57 CGGCGGTATGCCGACCACCATGAACCAAGGTCC 29 25 1 CCGACCATGA 0.647404 -51 AGCACGACATCGCGGGTCGCGAGGCC 32 4 1 ACGACGCGGG 0.90913 -27 CTGACAACTACCGACCACTCAGACCGCAACAGC 39 156 0 CCGACTCAGA 0.592944 -46 GTCAGCCGCGGCGTCAGCGCTGGCTGCAGCCCC 42 102 0 GCGTCGCTGG 0.692732 -199 TTCGCGCGGGCGGAAAGCGTTGGTCTGCAACGG 44 64 1 CGGACGTTGG 0.637038 -151 TACGCTCCGACCGTCAACGAGGAGGACGGCCAT 46 33 1 CCGTCGAGGA 0.82684 -204 TTGAAGCCTACCGTGGACGCGCACCCGGCGGCG 49 88 1 CCGTCGCGCA 0.54258 -118 ATCAACGGTGCCGCCATCGTGGAGGGATTCCAT 49 156 0 CCGCCGTGGA 0.553156 -50 ATCATTCAATCGGAGGCAGCTGAG 51 2 0 CGGAAGCTGA 0.316861 -213 GGCCGGGTTGCCGTTGGCGTTGGTTGTCGACAG 51 73 0 CCGTCGTTGG 0.796449 -142 GGCAACCCGGCCGTCTTCCCGGTTGTAACACGT 51 94 1 CCGTCCCGGT 0.570071 -121 AATCCAGCGACCGTTTCCTCGGATGTAGCAGGG 51 138 1 CCGTCTCGGA 0.766721 -77 TGCTTAGGTAGCGAACCCGCAGGAGTGCA 55 7 0 GCGACGCAGG 0.731048 -48 ATAGCCTAATCGGACTACGCGGATCG 57 4 0 CGGACGCGGA 0.933078 -297 GCACTCTCCGCCGATACCCCAGATGTCTCCCGT 57 88 1 CCGACCCAGA 0.879759 -213 TCTAATGCCCCGGTGAGCGAAGGGCGCATCCCT 57 202 1 CGGTCGAAGG 0.283717 -99 ATCCCTCGTACCGAATTCCCGGATTCCCACCCC 57 229 1 CCGACCCGGA 0.970168 -72 TCGGCCAGCTGCGACCTCGATGGGGTGGGAATC 57 250 0 GCGACGATGG 0.405509 -51 **** ****** Masking position 3 Map Score: 24.6135 Number of sites scoring better than the average of aligned sites = 16165 Number in coding regions = 15227 Number in noncoding regions = 938 Number of orfs with sites within 600 bp upstream = 656 Fraction of orfs with sites within 600 bp upstream = 0.105365 Motif number 8 CAAAGCCATCGCTGTACCGAGGCGAAATTGCG 6 29 0 GCTACCGAGG 0.613625 -64 AATACACGTAACCGTATCGAGGACTAACTTAC 9 81 0 ACCATCGAGG 0.843769 -61 GTGAGGACGAACCCTACCGGGGAGACGCCACT 10 28 1 ACCACCGGGG 0.804099 -273 GTACAAAACTGCCCCAACGAGTGGCGTCTCCC 10 47 0 GCCAACGAGT 0.479716 -254 CGTTGACACCGCCTGGACGACGGTAGGGCGTC 11 215 1 GCCGACGACG 0.706087 -60 CAGGGGCCACGTCGCGTCGCGGACAGTCCCAT 17 73 0 GTCGTCGCGG 0.64781 -129 TGGTGCATCGGTCAGGACGGTGTAGCGGCCTT 17 103 1 GTCGACGGTG 0.566052 -99 GTCCGATATTGCCTCATCGAGACCGTATCCGC 17 135 0 GCCATCGAGA 0.843772 -67 TCGGACAAGTGTCCAATCGATGATGAGAGTCG 17 161 1 GTCATCGATG 0.685879 -41 GGATGCCGTAGCCTTATCGAGGC 28 2 0 GCCATCGAGG 0.980802 -69 GCACGTTCGAGTCGTGCCGGGGGCACTGTGGA 33 186 1 GTCGCCGGGG 0.912173 -115 TGGGCGTCGACCCATAACGAGGCGGTGTCAAG 33 244 0 CCCAACGAGG 0.577447 -57 TAGCCGGCCGGCCCGGTCGATGGGCCACAGGC 37 14 0 GCCGTCGATG 0.947635 -160 CCGCTAGCGAGCCCGGCGGGGGCGGCTGCGAC 37 148 0 GCCGCGGGGG 0.731957 -26 TTCAGATGGGGCCCAACCGGTACGGCCCCA 43 9 0 GCCACCGGTA 0.497084 -29 CCTGCCGCCAGCCTGATCGAGGGCTAAGATGC 44 141 1 GCCATCGAGG 0.980792 -74 CTGGGTTTTGGCCCGGTCCGGGCTGGATGTTT 44 182 1 GCCGTCCGGG 0.859592 -33 TTTCTTACAAGTCTTGTCGGGGGAAGTTTAAG 45 47 0 GTCGTCGGGG 0.92679 -61 GCGATAGCCTGCCCTGTCGATACCGTCCGGGG 47 51 0 GCCGTCGATA 0.656767 -23 TAGTCGCGGCCATGACGGTGCGGCCGAACC 49 9 1 GCCGACGGTG 0.879382 -197 CGGCCCAGGTGCAGGATCGAGGGGCTTGGTAC 57 127 0 GCAATCGAGG 0.659372 -174 TGCCCGCACAGCCCGGCCCAGGTGCAGGATCG 57 140 0 GCCGCCCAGG 0.86415 -161 CCGGATTCCCACCCCATCGAGGTCGCAGCTGG 57 247 1 ACCATCGAGG 0.84356 -54 *** ******* Masking position 8 Map Score: 19.2522 Number of sites scoring better than the average of aligned sites = 7996 Number in coding regions = 7411 Number in noncoding regions = 585 Number of orfs with sites within 600 bp upstream = 458 Fraction of orfs with sites within 600 bp upstream = 0.0735625 Motif number 9 CCATGGTTGCGCTGCTGATCGTCGGATAGCG 1 26 0 GCTGCTGTCG 0.504731 -76 CCTGGGCGCGGGTTGTCGCCCCGTTGAC 5 8 1 GCGGGTTTCG 0.567196 -67 ATAACGAGTCGGGTGTCAACGGGGCGACAAC 5 22 0 GGGTGTCACG 0.393569 -53 ACAAGCCGCCGCGTGAGGACGAACCCTACCG 10 16 1 GCGTGAGACG 0.711691 -285 CCAACGAGTGGCGTCTCCCCGGTAGGGTTCG 10 35 0 GCGTCTCCCG 0.891624 -266 GCTTCGACCAGCCTGTGGTCGAAGCGGATCA 10 170 1 GCCTGTGTCG 0.638474 -131 GGAAACATGAGCGGCCCGACGGGAAATTCGA 10 217 1 GCGGCCCACG 0.787664 -84 CCATGGCACAGCGTGTCAACGCTGGTCCACC 11 156 0 GCGTGTCACG 0.938931 -119 GCCGTTGACACCGCCTGGACGACGGTAGGGC 11 213 1 CCGCCTGACG 0.680662 -62 GGGTGCTTTTGCGTCTGCTCGGCAGA 12 6 0 GCGTCTGTCG 0.970248 -76 TGGCGCTTTTGCGTCTGCTCGCGCATTTGAG 12 53 1 GCGTCTGTCG 0.970248 -29 GGCTCCGTCGGCGTGTCGTCGCCGTAGGTGC 13 33 1 GCGTGTCTCG 0.960509 -49 ATCCCGTGCCGCGGCTGGCCGGACGTGATCC 14 131 1 GCGGCTGCCG 0.879263 -64 TCGCTGCGGCGCGCATCGTCGCCCGGATAGG 19 21 0 GCGCATCTCG 0.690502 -136 TGATCGTTGAGCGGATGTTCGCACAGCTCGT 22 40 0 GCGGATGTCG 0.860887 -147 AGATCATGTCGCCGCAGCTCGGTGACGGCGT 25 31 0 GCCGCAGTCG 0.339483 -73 GCCCTCGACGGCGTATCGACGAAGATCATGT 25 53 0 GCGTATCACG 0.815479 -51 CCGTCTGGACGAATCGGCGGT 29 1 1 CCGTCTGACG 0.869781 -75 AACCACATACCCGTCAGTTCGATTTGTACAC 31 30 1 CCGTCAGTCG 0.661447 -46 CCCCGCACCTGCGTAACATCGACCCA 36 37 1 GCGTAACTCG 0.563833 -16 ACCGAATCGCCCGGCTCCTCCTCACCCCG 39 9 0 CCGGCTCTCC 0.509142 -193 GAATTGAACAGCGGCCCATCGCCGTGCGACG 39 111 0 GCGGCCCTCG 0.854404 -91 TCGGCGCATAGCGTCTGTACCTTGCCCGGGC 42 214 0 GCGTCTGACC 0.63286 -87 GGCAGCGCAGCCGTCTGCTCTCTGCCGTCCA 42 264 1 CCGTCTGTCT 0.244677 -37 ACCCGCTCACGCGGTTCCTCGAT 45 3 0 GCGGTTCTCG 0.792517 -105 AACCGCGTGAGCGGGTCAGCGGCGCGACGCT 45 18 1 GCGGGTCGCG 0.746929 -90 GCCGCCGGGTGCGCGTCCACGGTAGGCTTCA 49 89 0 GCGCGTCACG 0.83069 -117 AATCCAGCGACCGTTTCCTCGGATGTAGCAG 51 138 1 CCGTTTCTCG 0.548357 -77 AATGCCCCGTGTCGACGACGATGCGGT 56 7 1 CCGTGTCACG 0.832825 -58 ******* *** Masking position 10 Map Score: 26.9525 Number of sites scoring better than the average of aligned sites = 6429 Number in coding regions = 5875 Number in noncoding regions = 554 Number of orfs with sites within 600 bp upstream = 409 Fraction of orfs with sites within 600 bp upstream = 0.0656923 Motif number 10 GCTGCGGTTAGTCGAACGAGGATCGGGATG 6 65 1 GTCGAACGAG 0.91576 -28 CTTCGAACGTGCACTCAGGGC 13 2 1 TTCGAACGTG 0.932306 -80 GACCAGCAATCTAGATCGTGGCTCGCCCAG 22 142 0 CTAGATCGTG 0.915696 -45 CCCGGCACGACTCGAACGTGCGACCTAGGG 33 177 0 CTCGAACGTG 0.983284 -124 GAGTGCTACCGTCGAACGCGTGCTGTCCGG 44 15 0 GTCGAACGCG 0.943779 -200 GCGGTCAATCGTGGCGGTCAGCG 48 33 0 GTCAATCGTG 0.740062 -13 GATCACGAACGTCGAACGTGAACTGAGGGC 49 186 1 GTCGAACGTG 0.986193 -20 GATTCAGAGACTAGAACGTGTTACAACCGG 51 112 0 CTAGAACGTG 0.961658 -103 CAAACTAGAACGTGTTACATTTCT 52 5 1 CTAGAACGTG 0.961658 -69 TACCAAGCCCCTCGATCCTGCACCTGGGCC 57 128 1 CTCGATCCTG 0.835239 -173 ********** Masking position 5 Map Score: 9.52111 Number of sites scoring better than the average of aligned sites = 439 Number in coding regions = 394 Number in noncoding regions = 45 Number of orfs with sites within 600 bp upstream = 50 Fraction of orfs with sites within 600 bp upstream = 0.00803084 Motif number 11 GCCGCTGTGCGGCGAGGAGATCCGAAACG 1 83 1 GGCGAGAATC 0.428623 -19 GATCGTTACCGGGTAAGGGATCGCCACTCCCA 10 279 1 GGGTAGGATC 0.843551 -22 CCTGTTGGTTGGGCAAGGTATCGCTGCGGCGC 19 40 0 GGGCAGGATC 0.919474 -117 CCAACAGGTTGGCCGGGGGCCCTGTTAGGGTG 19 64 1 GGCCGGGCCC 0.627859 -93 GTTAGGGTGCCGGTACGGGACCTAGTCTTGAA 19 87 1 CGGTAGGACC 0.475815 -70 TCCACAAAAGGGGGTTTGGATCCTTCTTCAAG 19 113 0 GGGGTTGATC 0.282827 -44 CCTTGGGATCGGCGACGCTACCAACCAACCGG 21 146 0 GGCGAGCACC 0.945078 -52 CAGACTCTTTGGCTGTGGCACCTAAAAAAGAC 24 182 0 GGCTGGGACC 0.897915 -119 GCCGCAGCTCGGTGACGGCGTCGTCGATTAGT 25 20 0 GGTGAGGGTC 0.483144 -84 GCCTCGATAAGGCTACGGCATCCGATATCGGT 28 11 1 GGCTAGGATC 0.822423 -60 CCCTCTGACCGGCGAGGGAATCTATGACACGG 30 27 0 GGCGAGGATC 0.944429 -212 CTCGGGCCTCGCGACCCGCGATGTCG 32 15 0 GGCCTGCACC 0.83447 -16 AGTCAGACATGCGGTAGGCACCAGGCGGAGGA 35 91 1 GCGGTGGACC 0.540602 -25 GTAGGCACCAGGCGGAGGAACC 35 104 1 GGCGGGGACC 0.969075 -12 ACGCAGGTGCGGGGTGGCGGTCGTGGCAGCAT 36 19 0 GGGGTGCGTC 0.761773 -34 AACCGACGGTGGGGCCGCAACCGACGCCGCCC 37 85 1 GGGGCGCACC 0.701689 -89 CCGGAGCCATGGCGTCGCAGCCGCCCCCGCCG 37 135 1 GGCGTGCGCC 0.734852 -39 CTCAATGTAGGGGGATGCGGTCCGGGACGGCA 39 51 1 GGGGAGCGTC 0.825691 -151 TCGCGAGCCCGGGCAAGGTACAGACGCTATGC 42 208 1 GGGCAGGACA 0.404349 -93 GAGAGCAGACGGCTGCGCTGCCGCTTTCATAC 42 254 0 GGCTGGCGCC 0.623771 -47 GCGTATCGCCCGCGGCGGCACCGCGTC 46 6 0 CGCGGGGACC 0.730892 -231 GGTATCGACAGGGCAGGCTATCGCC 47 59 1 GGGCAGCATC 0.852263 -15 AAGAGGTGGCGGCCGTGGCAACC 52 61 1 GGCCGGGAAC 0.498682 -13 GCACTCCTGCGGGTTCGCTACCTAAGCAAGCA 55 12 1 GGGTTGCACC 0.787178 -43 ACGACGATGCGGTGGGGGTACCACTCACTGGC 56 25 1 GGTGGGGACC 0.791083 -40 CAGGATCGAGGGGCTTGGTACCTGATCACGGG 57 116 0 GGGCTGGACC 0.939462 -185 CGGGCTGTGCGGGCAAGGCGTCCATCCAGCGC 57 157 1 GGGCAGGGTC 0.844029 -144 CGACCTCGATGGGGTGGGAATCCGGGAATTCG 57 240 0 GGGGTGGATC 0.930338 -61 ***** ** *** Masking position 7 Map Score: 27.6181 Number of sites scoring better than the average of aligned sites = 6280 Number in coding regions = 5836 Number in noncoding regions = 444 Number of orfs with sites within 600 bp upstream = 334 Fraction of orfs with sites within 600 bp upstream = 0.053646 Motif number 12 CGGGGTTATAACGAGTCGGGTGTCAACGGGGC 5 28 0 ACGTCGGGTG 0.896225 -47 GATCAGTTCGGGGGATCGGCCGTTGAGGGCCA 9 24 1 GGGTCGGCCG 0.890815 -118 CGTATCGTGTGGGGGTCGGGCGCGCCAATACA 9 107 0 GGGTCGGGCG 0.985888 -35 CAGACAGCTCGGCGGCCTGGTGGCCAGGATCG 10 252 1 GGCCCTGGTG 0.871907 -49 GTCTAGTGAGACCGATCTGGTGAGACCCACAC 14 166 0 ACCTCTGGTG 0.796638 -29 ATGTCCAAGCTATCGGATGGTCGCGGCAG 17 8 1 AGCTCGGATG 0.701956 -194 CGGTCAGATCGGCTTTCGGGTGCGCTGAGGAG 26 261 1 GGCTCGGGTG 0.993384 -40 GCGGGTCTCGGGCGTCAAATTCCG 28 57 0 GGGTCGGGCG 0.985888 -14 GAGGAGCCGGGCGATTCGGTTGGAGCCTGGCC 39 20 1 GCGTCGGTTG 0.773651 -182 AATCCCATTAGGCCCTCGGGTGTGGCCCGTAC 42 144 1 GGCTCGGGTG 0.993383 -157 GATGTAGCAGGGCCTTATGGTGGAACTAGCAG 51 159 1 GGCTATGGTG 0.739755 -56 ACCTCTTTCTGCCCGTCGGGTGTGAGCTTGTC 52 36 0 GCCTCGGGTG 0.985602 -38 TAGCGTTCTGGGCATTCTGGCGGATTGCGCAT 57 55 0 GGCTCTGGCG 0.969409 -246 *** ******* Masking position 9 Map Score: 14.4035 Number of sites scoring better than the average of aligned sites = 1718 Number in coding regions = 1566 Number in noncoding regions = 152 Number of orfs with sites within 600 bp upstream = 142 Fraction of orfs with sites within 600 bp upstream = 0.0228076 Motif number 13 CCGAGACCTAACCGGCGGCCCCGAAGCG 2 7 1 CCTACGGCGG 0.923507 -82 TGGCCAGGATCGTTACCGGGTAAGGGATCGCC 10 272 1 CGTACGGGTA 0.830109 -29 GCGGATTTGTCGTTACTGGCGGGTAGCTTCTG 11 46 1 CGTACGGCGG 0.959351 -229 CGGCCAGCCGCGGCACGGGATGCTGCCGTCCG 14 120 0 CGGACGGATG 0.77737 -75 GTAGAAAAAACGTAACATGGTGGC 16 46 1 CGTACTGGTG 0.956454 -14 GAGCCGGATACCTTACTGGGTGCAGTCATGCC 24 60 1 CCTACGGGTG 0.972097 -241 TCAGCCGCTTCGTCACATGCTGTATCGGACTA 24 112 0 CGTACTGCTG 0.956442 -189 CGAACAAACCCGTCACGGTGTGGACCAAATGT 24 224 0 CGTACGTGTG 0.830106 -77 AGTCCACGCCCGTCACATGCTGGCTACCTCGT 26 172 0 CGTACTGCTG 0.956442 -129 TGCGCCTCCTGTCGGGCTGATTCTTCGTC 45 89 0 CCTTCGGCTG 0.8014 -19 GGCGCTGATCCCTGACCTGATGCCGCCCAAGT 46 113 0 CCTACTGATG 0.75401 -124 ACGTCTTTATCGACACCGGGTGCTGCCAGAGA 46 188 1 CGAACGGGTG 0.8964 -49 *** ** ***** Masking position 6 Map Score: 8.53269 Number of sites scoring better than the average of aligned sites = 737 Number in coding regions = 677 Number in noncoding regions = 60 Number of orfs with sites within 600 bp upstream = 63 Fraction of orfs with sites within 600 bp upstream = 0.0101189 Motif number 14 TCGCACAGCTCGTAGCCATAGCCATCAAGAG 22 22 0 CGAGCCATAG 0.646573 -165 GCTCGCCCAGCGGTGCCCGCGGGGGCTAAGG 22 121 0 CGTGCCCGCG 0.842273 -66 ACTACAACGGCGTAGGAAGTGTTGGGCATGA 24 85 0 CGAGGAAGTG 0.906598 -216 GCGGGGTTGGCTGAGCCAGAGGCTCAGCCGC 24 136 0 CTAGCCAGAG 0.70306 -165 TGCAGATTCACGGAGGAAGTGGCTATCTGCG 27 31 0 CGAGGAAGTG 0.906598 -98 CGCAACGCATCGAAGCACGAGGAGAATCC 29 57 1 CGAGCACGAG 0.957438 -19 TCGCGGGTCGCGAGGCCCGAG 32 20 1 CGGGCCCGAG 0.833441 -11 TCGTCACTAACGTAGCACGAGCTATTCGATG 35 52 1 CGAGCACGAG 0.95744 -64 CGTTGCCGTTGCAAGTGAGTGATCTTT 38 16 0 CGTGCAAGTG 0.916163 -17 CGCCGTGCGACGTAGGCCGTGTAGCCCAGTG 39 92 0 CGAGGCCGTG 0.914616 -110 TGCTAGCGTACCAAGCAAGTGCTTGCTTAGG 55 32 0 CCAGCAAGTG 0.879776 -23 GCTCCTCTCCCGTTGCCAGTGAGTGGTACCC 56 40 0 CGTGCCAGTG 0.928053 -25 TCGCAGCTGGCCGAGCAAGCGCTTGGTTGAT 57 269 1 CCAGCAAGCG 0.781514 -32 ACGCTCCTAACAAAGCAAGTGCTTGGTAGGT 58 14 1 CAAGCAAGTG 0.728467 -34 ** ******** Masking position 1 Map Score: 9.60475 Number of sites scoring better than the average of aligned sites = 1956 Number in coding regions = 1816 Number in noncoding regions = 140 Number of orfs with sites within 600 bp upstream = 132 Fraction of orfs with sites within 600 bp upstream = 0.0212014 Motif number 15 TGGACGTACGCGATCACCGCCGCTGTGCGG 1 65 1 CGATCACCGC 0.751229 -37 GTGATAACCGCGATCCTAGTCACCCGGTTG 4 73 0 CGATCCTAGT 0.195986 -22 GCCACCATCCCGATCCTCGTTCGACTAACC 6 70 0 CGATCCTCGT 0.735969 -23 ATTTCGGCAACGGCCTGCGGACTTTTTGCA 11 112 0 CGGCCTGCGG 0.890419 -163 GCACTCAGGGCGGGCTCCGTCGGCGTGTCG 13 21 1 CGGGCTCCGT 0.823777 -61 CGAAGCGGCCCGGTCTGCGCCGTCCATTGG 21 71 0 CGGTCTGCGC 0.921953 -127 ACTCAGGAAGCGATCTCCGTCGCGAAACAG 21 101 1 CGATCTCCGT 0.936764 -97 CCCGGGTTCCCGGCCAGCGTTGTCATCCGG 22 79 1 CGGCCAGCGT 0.958305 -108 GAGGAAGTGGCTATCTGCGTGGCGCGGTGG 27 20 0 CTATCTGCGT 0.506724 -109 TCGGGCCTCGCGACCCGCGATGTCGTGCT 32 10 0 CGACCCGCGA 0.550556 -21 AATTCCTCGACGGCCACCGTTAGATAAACT 33 95 1 CGGCCACCGT 0.939324 -206 GACGGTCTCCGTACACGACTCA 35 3 1 CGGTCTCCGT 0.967361 -113 CTGGGCTACACGGCCTACGTCGCACGGCGA 39 94 1 CGGCCTACGT 0.725613 -108 TCAGCTGTTGCGGTCTGAGTGGTCGGTAGT 39 153 1 CGGTCTGAGT 0.793728 -49 TCGATCACCGTAACAGGACCG 40 36 0 CGATCACCGT 0.918358 -11 CGGTCAGCGGCGGTAAGCGTCAACCGCGCG 48 12 0 CGGTAAGCGT 0.609466 -34 TCAATCGTGGCGGTCAGCGGCGGTAAGCGT 48 22 0 CGGTCAGCGG 0.899696 -24 CGATCCGCGTAGTCCGATTA 57 1 1 CGATCCGCGT 0.947625 -300 ********** Masking position 9 Map Score: 15.0406 Number of sites scoring better than the average of aligned sites = 4877 Number in coding regions = 4588 Number in noncoding regions = 289 Number of orfs with sites within 600 bp upstream = 250 Fraction of orfs with sites within 600 bp upstream = 0.0401542