AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00130_mtub_reg_300.orf -o00130_mtub_300.ace -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: cobL 67 cobL Input sequences: #1 Rv0012 93 hypothetical protein Rv0012 #2 pabA 36 pabA #3 Rv0187 300 hypothetical protein Rv0187 #4 menE 68 menE #5 Rv0543c 59 hypothetical protein Rv0543c #6 pitA 119 pitA #7 Rv0546c 62 hypothetical protein Rv0546c #8 Rv0547c 95 hypothetical protein Rv0547c #9 menB 271 menB #10 Rv0550c 191 hypothetical protein Rv0550c #11 fadD8_Rv0552 77 fadD8: fadD8, Rv0552: hypothetical protein Rv0552 #12 menD 42 menD #13 Rv0557 61 hypothetical protein Rv0557 #14 Rv0767c 201 hypothetical protein Rv0767c #15 pabB 115 pabB #16 Rv1008 85 hypothetical protein Rv1008 #17 Rv1009 207 hypothetical protein Rv1009 #18 trpE 140 trpE #19 cobG 224 cobG #20 Rv2073c 29 hypothetical protein Rv2073c #21 sucB 263 sucB #22 lipB 52 lipB #23 dgt 68 dgt #24 mbtB 98 mbtB #25 trpE2 300 trpE2 #26 Rv2689c 173 hypothetical protein Rv2689c #27 Rv2690c 134 hypothetical protein Rv2690c #28 Rv3083 77 hypothetical protein Rv3083 #29 adhD 30 adhD #30 Rv3087 37 hypothetical protein Rv3087 #31 nuoA 300 nuoA #32 nuoH 115 nuoH #33 entD 153 entD #34 rmlD 75 rmlD #35 phyA 28 phyA #36 idsA 22 idsA #37 mhpE 60 mhpE #38 Rv3536c 72 hypothetical protein Rv3536c Motif number 1 TCTATCGTTGCACCCCGGGCCATTCGTCGT 1 48 0 CACCCCGGGC 0.90631 -46 ACCGCCTGACCCTGCCGGCAGTCGT 2 6 0 CCTGCCGGCA 0.813891 -31 CAATTCGTCGCCGCAGGTGCAGCGGT 3 7 1 GTCGCCGCAG 0.726698 -294 CCACTGTGCTGGCGCCGGTGACGCCTACCG 3 33 0 GGCGCCGGTG 0.912139 -268 CACCCTCATCCGTGTCGGGGATCCCCGAGG 3 149 1 CGTGTCGGGG 0.90181 -152 CAGGCAACCGCCCACCGGCCTGGGGGTTTA 3 248 0 CCCACCGGCC 0.960473 -53 GCGGTTGCCTGCTGGCGCGCGACGGTCGGT 3 267 1 GCTGGCGCGC 0.928766 -34 GCGACGGTCGGTGGTCGCGCTAGCGT 3 285 1 GTGGTCGCGC 0.910828 -16 GGTAGCAGAACCGGCCGGGACGTGCAGCGC 4 22 0 CCGGCCGGGA 0.968133 -47 GGCCGGTTCTGCTACCGCGCTGCTGCTGCC 4 36 1 GCTACCGCGC 0.848432 -33 GTTATATCTTCCCGTCGGGGCCGTCGCCAA 5 37 0 CCCGTCGGGG 0.98303 -23 CCTGATTCTGCTGGTCGGGATATTGCGTTG 6 96 0 CTGGTCGGGA 0.733613 -24 CGAGGGTCGGCAGGCCGGGACCCGGT 7 7 0 CAGGCCGGGA 0.866485 -56 CCGACCCTCGGCCGCCGGCGTGCCGCTACG 7 27 1 GCCGCCGGCG 0.981917 -36 CGCGGCCGTTCGCCGAGGCTGTAGT 8 6 1 CCGTTCGCCG 0.630243 -90 TGGTGTCCCACTCGTCGGGCTTCTGCTCGG 8 38 0 CTCGTCGGGC 0.97376 -58 GTCCAGCGGGGCTTGGAGAAAG 9 3 1 CCAGCGGGGC 0.628007 -269 GAAAGGTGGGCGCGCCGCCCTGTTGAGCGC 9 28 1 CGCGCCGCCC 0.992652 -244 ATGCGGTCTACTCGTGGGGCATGTTAAGCG 9 55 0 CTCGTGGGGC 0.601103 -217 CCACAGAAAGCCGCCCGGGCGCCAACTCAC 9 155 1 CCGCCCGGGC 0.815133 -117 ATGTGACCAAGGCCCCGGGCACCATACCGT 9 191 1 GGCCCCGGGC 0.825137 -81 CCGGCTGACGCCCAGCGGCCATGATTACTG 9 221 1 CCCAGCGGCC 0.882119 -51 GATTAGTCTTCACCCCGGCCTTCGGCCTGG 10 54 1 CACCCCGGCC 0.821184 -138 GCCTGGCGATGCCGGCGCACTTGACGCCGC 10 78 1 GCCGGCGCAC 0.839934 -114 CGGCGCACTTGACGCCGCCGATGCCGTGCA 10 90 1 GACGCCGCCG 0.913566 -102 CTTCACAGCGGGTTTCGCGGTCTGCGGCGG 10 150 1 GGTTTCGCGG 0.473482 -42 GGTTCTTTCGCCCGCCGCAGACCGCGAAAC 10 161 0 CCCGCCGCAG 0.923704 -31 GGCCTTCGGCGGGTTCTTTCG 10 181 0 GCCTTCGGCG 0.737059 -11 ACCGTATGGCCGGGCCGCGC 12 1 0 CGGGCCGCGC 0.993657 -42 CATTTCGACAGCCGGCGCTGACAGT 13 47 1 GCCGGCGCTG 0.754079 -15 GGGGCCACGTCGCGTCGCGGACAGTCCCAT 14 120 1 CGCGTCGCGG 0.978937 -82 TGGCTTGCCTCCTGCCGCGACCATCCGATA 14 172 1 CCTGCCGCGA 0.898615 -30 CCGTTTCTCGCTGACCGCGAGACGTTGACG 15 34 0 CTGACCGCGA 0.546481 -82 CACAGCAACACCCCCCGGGACGGAGACCGG 15 83 1 CCCCCCGGGA 0.897425 -33 TCCGTGACCGGCTCCGGTCTCCGTCCCGG 15 97 0 GGCTCCGGTC 0.778259 -19 CGGGTGAGCTCCGACCGCCCAGCCAGACGA 16 33 1 CCGACCGCCC 0.909372 -53 CCAGGGGTTCCGGAGCGGGCGGTGGATCTC 16 61 0 CGGAGCGGGC 0.89694 -25 CTCCGGAACCCCTGGCGCCG 16 76 1 CCTGGCGCCG 0.804735 -10 TTATGGGCCGCTCGGCGCGC 17 1 0 CTCGGCGCGC 0.973873 -207 ATAACACCCGCGCGCCGGAGTTGCTCAACA 17 27 1 CGCGCCGGAG 0.931379 -181 AAGACGGTAACGAACCGGCCAATGTTGAGC 17 49 0 CGAACCGGCC 0.702861 -159 TGTGATCGAACGGGTGGGGCCTCTAGGTTT 17 78 1 CGGGTGGGGC 0.679469 -130 GAGTGTTGCCGAGGTCGGGGATATAGCGCG 17 149 1 GAGGTCGGGG 0.801439 -59 CGGCGCGCAAGGAGTCGGGCAATCGGTTGT 18 23 0 GGAGTCGGGC 0.880558 -118 CCTTGCGCGCCGCTTCGCGGCTGGGGGTGC 18 41 1 CGCTTCGCGG 0.888923 -100 GGGGGTGCCCCCATGCGCGCCGTTTGCGCG 18 63 1 CCATGCGCGC 0.669905 -78 GACGACGATGCACGCCGCGCAAACGGCGCG 18 78 0 CACGCCGCGC 0.986637 -63 GGCGTGCATCGTCGTCGGGCTACGCCCGGG 18 92 1 GTCGTCGGGC 0.961492 -49 ATACGCCGATCGGCCCGGGCGTAGCCCGAC 18 105 0 CGGCCCGGGC 0.886856 -36 CCCACTCCGGCCACCTGTCGCG 19 3 1 CACTCCGGCC 0.862597 -222 ACTCCGGCCACCTGTCGCGCCCTCAGAAGG 19 14 1 CCTGTCGCGC 0.941429 -211 GACGCCGCGGCACACCGCGACGCTATCGGC 19 51 0 CACACCGCGA 0.620048 -174 CGACCGCGCGGACGCCGCGGCACACCGCGA 19 61 0 GACGCCGCGG 0.962007 -164 TCGGGCACGAGCGACCGCGCGGACGCCGCG 19 72 0 GCGACCGCGC 0.941568 -153 AGTCGCTCCACGAGTCGGGCACGAGCGACC 19 86 0 CGAGTCGGGC 0.916366 -139 CGTGGAGCGACTCGGCGCCCTCAAACCCGC 19 104 1 CTCGGCGCCC 0.940068 -121 AAACCCGCCACGATGCGCGCAATCGAAAAC 19 126 1 CGATGCGCGC 0.657911 -99 GCGCTCAGGTCCCGTCGGGAGGCCGAGGAT 19 168 0 CCCGTCGGGA 0.94583 -57 GGGTCGCCGCCTCGCCGCGCTCAGGTCCCG 19 184 0 CTCGCCGCGC 0.991198 -41 CGCACCTCCGCCCACCGGGACTTGCTGTTG 21 11 1 CCCACCGGGA 0.900372 -253 GCTGTTGCAACCAGTCGCCCAAACCGTAGC 21 34 1 CCAGTCGCCC 0.80302 -230 GGACATCGGTGCAGTCGGCCGTCCTTGCTA 21 60 0 GCAGTCGGCC 0.764419 -204 TTGCCGACACCTCGGCGGGGACATCGGTGC 21 78 0 CTCGGCGGGG 0.956866 -186 GTCGGCAACGGCCGCCGGGGCCACCAACTC 21 100 1 GCCGCCGGGG 0.991549 -164 GGGCCACCAACTCGCCGCGCCCTGGATGTG 21 117 1 CTCGCCGCGC 0.991198 -147 GGATGTGTGTCGCTCCGGGCGCAGTGACAG 21 140 1 CGCTCCGGGC 0.985052 -124 GTTCCGCACCCGGTGCGCGACCGTGTGATA 21 193 1 CGGTGCGCGA 0.584259 -71 GATCGATCGTCGGTCGGCGCAGGTCCACCT 21 229 0 CGGTCGGCGC 0.525793 -35 CCAGCCGTGCGCTGGCGGCCGAGTAGCCTA 22 27 1 GCTGGCGGCC 0.865464 -26 TGCCAGGGTGGTCGCCGCACGCCCGTATCC 23 37 0 GTCGCCGCAC 0.839136 -32 GTGTGCGTGAGTTGGCGGGCATGGTAACCG 25 70 1 GTTGGCGGGC 0.834157 -231 CCGGCGAGCACCGGCCGCGACCGCCTCTGC 25 97 1 CCGGCCGCGA 0.962522 -204 CTGCGAAACGCAGTCCGCGGACCGTCCGGC 25 144 1 CAGTCCGCGG 0.758386 -157 AGTCCGCGGACCGTCCGGCCGTGGGTGGGT 25 155 1 CCGTCCGGCC 0.933961 -146 GGTGGGTCCTGTCGCCGCCCCGGCTGGTGC 25 178 1 GTCGCCGCCC 0.969352 -123 GAAGAAAATGCTCGTCGGGAGCAAATGGCA 25 205 0 CTCGTCGGGA 0.85055 -96 TGGGTCGCAGCCCCCCGGGGTCGTCGCATG 25 252 0 CCCCCCGGGG 0.753612 -49 TCGATTGACCCGCGCCGGCGACGATGCAGA 26 21 1 CGCGCCGGCG 0.987745 -153 GCGGGTCACTGGCGCCGCTCCTCCCCATCG 26 57 0 GGCGCCGCTC 0.945141 -117 GCCAGTGACCCGCGCCGGCGACGATGCAGA 26 74 1 CGCGCCGGCG 0.987745 -100 GCGGGTCACTGGCGCCGCTCCTCCCCATCG 26 110 0 GGCGCCGCTC 0.945141 -64 GCCAGTGACCCGCGCCGGCGACGATGCAGA 26 127 1 CGCGCCGGCG 0.987745 -47 TGGCGCCGCTCCTCCCCATCG 26 163 0 GGCGCCGCTC 0.945141 -11 TCGCGTACGGCGCACCGGACACAGCCGAGA 27 20 0 CGCACCGGAC 0.793261 -115 AAATCGGCTGGCCACCGCGGGTTGCCGATC 27 48 0 GCCACCGCGG 0.944073 -87 AGTGTCAATACGTGGCGGGGGTCCTCCACC 28 47 1 CGTGGCGGGG 0.917184 -31 GGGGATTGCGCGTCCCGGCGAATTGTATGA 31 67 0 CGTCCCGGCG 0.659739 -234 GGCTGGGTCCGGCGTCGGTCGCTGCGAAGC 31 103 0 GGCGTCGGTC 0.850115 -198 GCACCAGCCTGACCCCGGGAATGTGGGGTG 31 162 1 GACCCCGGGA 0.559784 -139 GACGAACCGGGGCTTCGGGCCGTCACAGTG 31 217 0 GGCTTCGGGC 0.925895 -84 CGGCCGGGCGGTGACCGGGCTGCCGTGACG 31 243 0 GTGACCGGGC 0.862104 -58 TCACCGCCCGGCCGCCGCGCTGGCGGCCCC 31 259 1 GCCGCCGCGC 0.995273 -42 TCCGTCGTACGGGGCCGCCAGCGCGGCGGC 31 269 0 GGGGCCGCCA 0.872286 -32 TCCCCTTGCCGCGAGCGCGCGTGTTCCCCC 32 16 1 GCGAGCGCGC 0.836924 -100 GGCACCTCCCGCTTGCGGGGGAACACGCGC 32 32 0 GCTTGCGGGG 0.575142 -84 CCTTGCGCGAGGGTCCGCACTGGTACATCA 32 86 0 GGGTCCGCAC 0.558155 -30 AGGCGCCGCTCTCCCCCGCAA 33 2 1 GGCGCCGCTC 0.945141 -152 GGTCCCTGCCGCTTGCGGGGGAGAGCGGCG 33 14 0 GCTTGCGGGG 0.575142 -140 CTCTCCCTTCGTCGTCGCCCGCGCAGTCAC 33 58 1 GTCGTCGCCC 0.898002 -96 ACATCCTAGGCCTGTCGCCCGAACCACTGT 33 113 0 CCTGTCGCCC 0.870196 -41 GGCCTAGGATGTCGTCGGGCACAATCTGTC 33 131 1 GTCGTCGGGC 0.961492 -23 GGCTACCCGACAGGGCGCCGTTACACAAGT 34 19 0 CAGGGCGCCG 0.718027 -57 ACGCCTCGGGCACGCCGGGGTTGGCTACCC 34 41 0 CACGCCGGGG 0.978006 -35 GACACCAGCCGCGCGTCCAAGAAT 37 5 1 CCAGCCGCGC 0.972334 -56 GATCCGGCAAGGGTGCGGGCTGACACTG 37 43 1 GGGTGCGGGC 0.8724 -18 TAGAATTGCTCGGGTCGGGCGCTACTGGCC 38 24 1 CGGGTCGGGC 0.981199 -49 CCTCGTAGGCGTGACCGGGCCAGTAGCGCC 38 41 0 GTGACCGGGC 0.862104 -32 ********** Masking position 7 Map Score: 185.317 Number of sites scoring better than the average of aligned sites = 71294 Number in coding regions = 66295 Number in noncoding regions = 4999 Number of orfs with sites within 600 bp upstream = 1525 Fraction of orfs with sites within 600 bp upstream = 0.244941 Motif number 2 CGATAGAAGTTGCAGCTGCAGGCATACCTT 1 71 1 TGCAGCTGCA 0.300193 -23 ACGACTGCCGGCAGGGTCAGGCGGTAGCC 2 10 1 GGCAGGGTCA 0.65734 -27 CGTGACAGGCTACCGCCTGACCCTGCC 2 20 0 GGCTACCGCC 0.547256 -17 AATTCGTCGCCGCAGGTGCAGCGGTAGGCG 3 12 1 CGCAGGTGCA 0.753612 -289 CATGCCACTGTGCTGGCGCCGGTGACGCCT 3 37 0 TGCTGGCGCC 0.879238 -264 ATGCGAACCCGACAGCCACAGCCCTCGTGG 3 75 1 GACAGCCACA 0.362494 -226 CGAACTACGAGGCTGGGACCTTGCTGACCT 3 109 0 GGCTGGGACC 0.975309 -192 CGCGCCAGCAGGCAACCGCCCACCGGCCTG 3 256 0 GGCAACCGCC 0.496625 -45 ACGCTAGCGCGACCACCGACCGTCGCG 3 284 0 CGCGACCACC 0.807108 -17 TAGCAGAACCGGCCGGGACGTGCAGCGCAC 4 20 0 GGCCGGGACG 0.869752 -49 GCAGCAGCAGCGCGGTAGCAGAACCGGCCG 4 35 0 CGCGGTAGCA 0.387188 -34 TTGCAGGGCAGGCAGCAGCAGCGCGGTAGC 4 46 0 GGCAGCAGCA 0.455877 -23 AGTCGCAGATGGCCGCGACATAGGGTTTGG 5 11 1 GGCCGCGACA 0.939917 -49 TTCCCGTCGGGGCCGTCGCCAAACCCTATG 5 29 0 GGCCGTCGCC 0.512586 -31 AGGGTCGGCAGGCCGGGACCCGGT 7 5 0 GGCCGGGACC 0.983712 -58 GTAGCGGCACGCCGGCGGCCGAGGGTCGGC 7 26 0 GCCGGCGGCC 0.726305 -37 GCTTCTGCTCGGCAACTACAGCCTCGGCGA 8 20 0 GGCAACTACA 0.298359 -76 TGATCGAGTACGCGGTGACCCTCCACAGAA 9 133 1 CGCGGTGACC 0.902691 -139 CAGAAAGCCGCCCGGGCGCCAACTCACGAC 9 158 1 CCCGGGCGCC 0.852186 -114 ACGGTATGGTGCCCGGGGCCTTGGTCACAT 9 191 0 GCCCGGGGCC 0.928033 -81 CATACCGTCCGGCTGACGCCCAGCGGCCAT 9 213 1 GGCTGACGCC 0.864172 -59 GTTCACCCATGCCTGCCACAGTAATCATGG 9 239 0 GCCTGCCACA 0.70206 -33 GGCTTGGCCGTTGCATGAAGTCTGG 10 6 1 GGCCGTTGCA 0.5907 -186 GGCCTGGCGATGCCGGCGCACTTGACGCCG 10 77 1 TGCCGGCGCA 0.846476 -115 GCACGGCATCGGCGGCGTCAAGTGCGCCGG 10 89 0 GGCGGCGTCA 0.75993 -103 GGGTTCTTTCGCCCGCCGCAGACCGCGAAA 10 162 0 GCCCGCCGCA 0.857914 -30 CATACGGTCCGGCTGTGACACTCTGTACTG 12 23 1 GGCTGTGACA 0.870387 -20 GTATCCGCAAGGCCGCTACACCGTCCTGAC 14 80 1 GGCCGCTACA 0.871747 -122 GCTTGCCTCCTGCCGCGACCATCCGATAGC 14 174 1 TGCCGCGACC 0.776868 -28 TCCGTGACCGGCTCCGGTCTCCGTC 15 101 0 GACCGGCTCC 0.303854 -15 GCTCCGGAACCCCTGGCGCCG 16 75 1 CCCTGGCGCC 0.835796 -11 GTGATCGAACGGGTGGGGCCTCTAGGTTTC 17 79 1 GGGTGGGGCC 0.536061 -129 AGTCGTCAGGCTACAACCGATTGCCCGA 18 9 1 GGCTACAACC 0.346317 -132 CGACGCTATCGGCAGCTACACCTTCTGAGG 19 34 0 GGCAGCTACA 0.75184 -191 ACCGCGCGGACGCCGCGGCACACCGCGACG 19 59 0 CGCCGCGGCA 0.617531 -166 GCGGCGTCCGCGCGGTCGCTCGTGCCCGAC 19 73 1 CGCGGTCGCT 0.493328 -152 AGCGCGGCGAGGCGGCGACCCATTCTCCCG 19 193 1 GGCGGCGACC 0.777549 -32 TCACGCTAGCGCAGGCAATAATC 20 4 1 CGCTAGCGCA 0.750332 -26 CACCGGGACTTGCTGTTGCAACCAGTCGCC 21 23 1 TGCTGTTGCA 0.220835 -241 CCGACACCTCGGCGGGGACATCGGTGCAGT 21 75 0 GGCGGGGACA 0.95395 -189 CCGAGGTGTCGGCAACGGCCGCCGGGGCCA 21 93 1 GGCAACGGCC 0.487016 -171 GCCACCAACTCGCCGCGCCCTGGATGTGTG 21 119 1 CGCCGCGCCC 0.609996 -145 TCGCTCCGGGCGCAGTGACAGGATAGGTTT 21 149 1 CGCAGTGACA 0.723852 -115 GCTACTCGGCCGCCAGCGCACGGCTGGGCA 22 24 0 CGCCAGCGCA 0.829114 -29 CGCCCGTATCCGCCGGCACAGCGTCTAAAT 23 18 0 CGCCGGCACA 0.949475 -51 ACGGGCGTGCGGCGACCACCCTGGCAGACT 23 41 1 GGCGACCACC 0.819142 -28 CATGGTAACCGGCGAGCACCGGCCGCGACC 25 89 1 GGCGAGCACC 0.869034 -212 GGCGAGCACCGGCCGCGACCGCCTCTGCCT 25 99 1 GGCCGCGACC 0.789528 -202 CACCAGCCGGGGCGGCGACAGGACCCACCC 25 177 0 GGCGGCGACA 0.926266 -124 TCGCCGCCCCGGCTGGTGCCATTTGCTCCC 25 189 1 GGCTGGTGCC 0.93147 -112 ACGTTGGACATGCGACGACCCCGGGGGGCT 25 244 1 TGCGACGACC 0.393515 -57 GACCCCGGGGGGCTGCGACCCATTAAGTAG 25 260 1 GGCTGCGACC 0.95086 -41 TCTGCATCGTCGCCGGCGCGGGTCAATCGA 26 21 0 CGCCGGCGCG 0.873169 -153 CGGCGCGGGTCACTGGCGCCGCTCCTCCCC 26 61 0 CACTGGCGCC 0.65158 -113 TCTGCATCGTCGCCGGCGCGGGTCACTGGC 26 74 0 CGCCGGCGCG 0.873169 -100 CGGCGCGGGTCACTGGCGCCGCTCCTCCCC 26 114 0 CACTGGCGCC 0.65158 -60 TCTGCATCGTCGCCGGCGCGGGTCACTGGC 26 127 0 CGCCGGCGCG 0.873169 -47 AGGTCCTCTCGGCTGTGTCCGGTGCGCCGT 27 14 1 GGCTGTGTCC 0.69629 -121 ATCGGCAACCCGCGGTGGCCAGCCGATTTA 27 49 1 CGCGGTGGCC 0.57484 -86 GTCTAGGGAACGCTACCGCCACGCTCGGAT 27 96 1 CGCTACCGCC 0.723911 -39 AATGATAAAAGGCTGTCGCAAAGTGTCAAT 28 26 1 GGCTGTCGCA 0.844381 -52 TCCTCCACCATGCTGGAGCC 28 68 1 TGCTGGAGCC 0.392967 -10 GGCAAATGCCGAGATTAACA 31 1 1 GGCAAATGCC 0.129574 -300 AGTTTTGCTTCGCAGCGACCGACGCCGGAC 31 97 1 CGCAGCGACC 0.937437 -204 CAGAACCCGTGGCTGGGTCCGGCGTCGGTC 31 113 0 GGCTGGGTCC 0.863298 -188 CCCGGGGTCAGGCTGGTGCATACCTGTGCG 31 151 0 GGCTGGTGCA 0.885985 -150 AACATAGTCGCGCAACGGCCACCCCACATT 31 181 0 CGCAACGGCC 0.558807 -120 CGGGGCTTCGGGCCGTCACAGTGACCTTCA 31 210 0 GGCCGTCACA 0.91801 -91 GCGGCGGCCGGGCGGTGACCGGGCTGCCGT 31 247 0 GGCGGTGACC 0.900692 -54 GGGCCGCCAGCGCGGCGGCCGGGCGGTGAC 31 258 0 CGCGGCGGCC 0.51123 -43 GCCCCCAGTACGCCGACACACCGATTTTGA 32 59 1 CGCCGACACA 0.646138 -57 GGCCGCCACTCCTTGCGCGA 32 106 0 GGCCGCCACT 0.79282 -10 CCCCGCAAGCGGCAGGGACCCCCACCTCAT 33 24 1 GGCAGGGACC 0.962791 -130 TCGTCGCCCGCGCAGTCACAGTGTCATCCT 33 69 1 CGCAGTCACA 0.73651 -85 GACATCCTAGGCCTGTCGCCCGAACCACTG 33 114 0 GCCTGTCGCC 0.757372 -40 CCCGACAGGGCGCCGTTACACAAGTAGTCT 34 14 0 CGCCGTTACA 0.597956 -62 CAAGGGTGCGGGCTGACACTG 37 50 1 GGCTGACACT 0.171694 -11 ********** Masking position 9 Map Score: 107.663 Number of sites scoring better than the average of aligned sites = 49721 Number in coding regions = 46778 Number in noncoding regions = 2943 Number of orfs with sites within 600 bp upstream = 1156 Fraction of orfs with sites within 600 bp upstream = 0.185673 Motif number 3 CTGCTGCTGCCTGCCCTGCAACGA 4 55 1 CTGCCCCACG 0.99451 -14 GCGTACTCGTTTGATCGACAACGCAATATCCCG 6 78 1 TTGATCCACG 0.951991 -42 CGTCGGGCTTCTGCTCGGCAACTACAGCCTCGG 8 23 0 CTGCTCCACT 0.935059 -73 CGGCACAGTGTCGCTCGGCAATGCGGTCTACTC 9 72 0 TCGCTCCATG 0.916731 -200 GCCGGCATATCTGCACGGCATCGGCGGCGTCAA 10 98 0 CTGCACCACG 0.983926 -94 CAAGATCACACCGAGCGTCAACGTCTCGCGGTC 15 19 1 CCGAGCCACG 0.802611 -97 CGCGCCGGAGTTGCTCAACATTGGCCGGTTCGT 17 37 1 TTGCTCCATG 0.948992 -171 TTGACCCCGTCTGCCCAGCCGTGCGCTGGCGGC 22 13 1 CTGCCCCCTG 0.824122 -40 GCTAGGCTACTCGGCCGCCAGCGCACGGCTGGG 22 26 0 TCGGCCCACG 0.792636 -27 CCCCATCGCTTTGCTCTGCATCGTCGCCGGCGC 26 32 0 TTGCTCCACG 0.99331 -142 ACTGGCGCCGCTCCTCCCCATCGCTTTGCTCTG 26 47 0 CTCCTCCACG 0.989009 -127 CCCCATCGCTTTGCTCTGCATCGTCGCCGGCGC 26 85 0 TTGCTCCACG 0.99331 -89 ACTGGCGCCGCTCCTCCCCATCGCTTTGCTCTG 26 100 0 CTCCTCCACG 0.989009 -74 CCCCATCGCTTTGCTCTGCATCGTCGCCGGCGC 26 138 0 TTGCTCCACG 0.99331 -36 TGGCGCCGCTCCTCCCCATCGCTTTGCTCTG 26 153 0 CTCCTCCACG 0.989009 -21 ATCCCCAGTTTTGCTTCGCAGCGACCGACGCCG 31 91 1 TTGCTTCACG 0.867613 -210 AGGCGCCGCTCTCCCCCGCAAGCGGCAG 33 6 1 CCGCTCCCCG 0.975517 -148 CGGCAGGGACCCCCACCTCATCGTGCTCTCCCT 33 33 1 CCCCACCACG 0.909021 -121 CTGACCAACACCGTAGTTGGAGG 35 1 1 CTGACCCACG 0.960309 -28 ****** ** ** Masking position 9 Map Score: 34.6024 Number of sites scoring better than the average of aligned sites = 3457 Number in coding regions = 3187 Number in noncoding regions = 270 Number of orfs with sites within 600 bp upstream = 203 Fraction of orfs with sites within 600 bp upstream = 0.0326052 Motif number 4 TCCTCGGGATCTGGCGGGACTACCTCGACA 1 16 1 CTGGCGGGAC 0.876639 -78 TGACAGGCTACCGCCTGACCCTGCCGGCAG 2 15 0 CCGCCTGACC 0.341278 -22 GGCGTCACCGGCGCCAGCACAGTGGCATGG 3 38 1 GCGCCAGCAC 0.498903 -263 CATCCGTGTCGGGGATCCCCGAGGAATCCC 3 155 1 GGGGATCCCC 0.0784692 -146 ATCTGGTAAACCCCCAGGCCGGTGGGCGGT 3 242 1 CCCCCAGGCC 0.914377 -59 ACCACCGACCGTCGCGCGCCAGCAGGCAAC 3 270 0 GTCGCGCGCC 0.566535 -31 GTAGCAGAACCGGCCGGGACGTGCAGCGCA 4 21 0 CGGCCGGGAC 0.849715 -48 CGCGCTGCTGCTGCCTGCCCTGCAACGA 4 51 1 CTGCCTGCCC 0.725568 -18 AGTCGCAGATGGCCGCGACATAGGGTTTG 5 10 1 TGGCCGCGAC 0.696164 -50 CGGCCGAGGGTCGGCAGGCCGGGACCCGGT 7 11 0 TCGGCAGGCC 0.943636 -52 CCCTCGGCCGCCGGCGTGCCGCTACGTGAT 7 31 1 CCGGCGTGCC 0.951499 -32 GAGGCTGTAGTTGCCGAGCAGAAGCCCGAC 8 25 1 TTGCCGAGCA 0.196765 -71 GAGTCTAGTTTTGCCGAGCCTGTAGTTACT 8 69 0 TTGCCGAGCC 0.773695 -27 TTCTCCAAGCCCCGCTGGAC 9 1 0 CCCGCTGGAC 0.455126 -271 TGGAGAAAGGTGGGCGCGCCGCCCTGTTGA 9 24 1 TGGGCGCGCC 0.871413 -248 CACGAGTAGACCGCATTGCCGAGCGACACT 9 69 1 CCGCATTGCC 0.226437 -203 TGGTCGTGAGTTGGCGCCCGGGCGGCTTTC 9 160 0 TTGGCGCCCG 0.200208 -112 CATGATTACTGTGGCAGGCATGGGTGAACG 9 240 1 GTGGCAGGCA 0.243017 -32 CTTCATGCAACGGCCAAGCC 10 1 0 CGGCCAAGCC 0.79831 -191 TGCGCCGGCATCGCCAGGCCGAAGGCCGGG 10 67 0 TCGCCAGGCC 0.942319 -125 TTCGCGGTCTGCGGCGGGCGAAAGAACCCG 10 163 1 GCGGCGGGCG 0.546665 -29 GAAAGAACCCGCCGAAGGCC 10 182 1 GCCGAAGGCC 0.233406 -10 CAATTTGGATCTGCCGTGCCCTCGTAATCT 11 36 0 CTGCCGTGCC 0.858175 -42 CTGGCAAGACTAGAACGTGT 11 68 0 CTGGCAAGAC 0.403931 -10 CCGGACCGTATGGCCGGGCCGCGC 12 5 0 TGGCCGGGCC 0.872286 -38 GCAGCAGAGTTCGCACGCCGTATGCCGCT 13 10 1 TTCGCACGCC 0.56017 -52 GAGACCGTATCCGCAAGGCCGCTACACCGT 14 74 1 CCGCAAGGCC 0.825793 -128 GTTTAGCAGACTGGCTTGCCTCCTGCCGCG 14 161 1 CTGGCTTGCC 0.493419 -41 GGCTTGCCTCCTGCCGCGACCATCCGATAG 14 173 1 CTGCCGCGAC 0.883782 -29 ACAGCAACACCCCCCGGGACGGAGACCGGA 15 84 1 CCCCCGGGAC 0.8338 -32 TGAGCTCCGACCGCCCAGCCAGACGAGATC 16 37 1 CCGCCCAGCC 0.699669 -49 ACCGCCCGCTCCGGAACCCCTGGCGCCG 16 68 1 CCGGAACCCC 0.683479 -18 GCCCATAACACCCGCGCGCCGGAGTTGCTC 17 23 1 CCCGCGCGCC 0.963671 -185 CCTCTAGGTTTCGGAGGGCCCATTTTGCTT 17 97 1 TCGGAGGGCC 0.816652 -111 ATCCCCGACCTCGGCAACACTCAACCACCT 17 141 0 TCGGCAACAC 0.225946 -67 CAGCCGCGAAGCGGCGCGCAAGGAGTCGGG 18 34 0 GCGGCGCGCA 0.705119 -107 GGCGCGCATGGGGGCACCCCCAGCCGCGAA 18 54 0 GGGGCACCCC 0.641879 -87 CGCCGTTTGCGCGGCGTGCATCGTCGTCGG 18 80 1 GCGGCGTGCA 0.285938 -61 CGTCGGGCTACGCCCGGGCCGATCGGCGTA 18 104 1 CGCCCGGGCC 0.817371 -37 CTCCGGCCACCTGTCGCGCCCTCAGAAGGT 19 15 1 CTGTCGCGCC 0.618206 -210 CGCGGACGCCGCGGCACACCGCGACGCTAT 19 55 0 GCGGCACACC 0.278836 -170 GTGGAGCGACTCGGCGCCCTCAAACCCGCC 19 105 1 TCGGCGCCCT 0.28864 -120 TCAGGTCCCGTCGGGAGGCCGAGGATCAGG 19 164 0 TCGGGAGGCC 0.218813 -61 GAATGGGTCGCCGCCTCGCCGCGCTCAGGT 19 188 0 CCGCCTCGCC 0.957984 -37 CCGGCGGCCGTTGCCGACACCTCGGCGGGG 21 88 0 TTGCCGACAC 0.197492 -176 TCGGCAACGGCCGCCGGGGCCACCAACTCG 21 101 1 CCGCCGGGGC 0.864145 -163 GGCCACCAACTCGCCGCGCCCTGGATGTGT 21 118 1 TCGCCGCGCC 0.975945 -146 GTCACTGCGCCCGGAGCGACACACATCCAG 21 138 0 CCGGAGCGAC 0.721288 -126 TTGACCCCGTCTGCCCAGCCGTGCGCTGGC 22 13 1 CTGCCCAGCC 0.424134 -40 CAGCCGTGCGCTGGCGGCCGAGTAGCCTAG 22 28 1 CTGGCGGCCG 0.39398 -25 ACGCCCGTATCCGCCGGCACAGCGTCTAAA 23 19 0 CCGCCGGCAC 0.895947 -50 CAGGGTGGTCGCCGCACGCCCGTATCCGCC 23 34 0 GCCGCACGCC 0.772822 -35 CCTGTTAGCACAGGCTGCCCTAATTTTAGT 24 70 0 CAGGCTGCCC 0.133833 -29 TGTGCGTGAGTTGGCGGGCATGGTAACCGG 25 71 1 TTGGCGGGCA 0.500464 -230 GGCATGGTAACCGGCGAGCACCGGCCGCGA 25 87 1 CCGGCGAGCA 0.702858 -214 CGGCGAGCACCGGCCGCGACCGCCTCTGCC 25 98 1 CGGCCGCGAC 0.857214 -203 CGTAATCATTTCCGCAGGCAGAGGCGGTCG 25 114 0 TCCGCAGGCA 0.208327 -187 GTGGGTCCTGTCGCCGCCCCGGCTGGTGCC 25 179 1 TCGCCGCCCC 0.934581 -122 ACTTAATGGGTCGCAGCCCCCCGGGGTCGT 25 258 0 TCGCAGCCCC 0.6578 -43 GCGCGGGTCACTGGCGCCGCTCCTCCCCAT 26 59 0 CTGGCGCCGC 0.444445 -115 GCGCGGGTCACTGGCGCCGCTCCTCCCCAT 26 112 0 CTGGCGCCGC 0.444445 -62 TGGCGCCGCTCCTCCCCATCGC 26 162 0 GCGCCGCTCC 0.507947 -12 TCGGCTGTGTCCGGTGCGCCGTACGCGATC 27 22 1 CCGGTGCGCC 0.627648 -113 CCGTACGCGATCGGCAACCCGCGGTGGCCA 27 40 1 TCGGCAACCC 0.621729 -95 CCGACGTAAATCGGCTGGCCACCGCGGGTT 27 55 0 TCGGCTGGCC 0.877713 -80 GGGAACGCTACCGCCACGCTCGGATAGGCC 27 101 1 CCGCCACGCT 0.514876 -34 TGGTGGAGGACCCCCGCCACGTATTGACAC 28 48 0 CCCCCGCCAC 0.679822 -30 TTCATACAATTCGCCGGGACGCGCAATCCC 31 66 1 TCGCCGGGAC 0.884946 -235 CAGTTTTGCTTCGCAGCGACCGACGCCGGA 31 96 1 TCGCAGCGAC 0.45898 -205 AGTCGCGCAACGGCCACCCCACATTCCCGG 31 176 0 CGGCCACCCC 0.876786 -125 ACTGTGACGGCCCGAAGCCCCGGTTCGTCA 31 218 1 CCCGAAGCCC 0.301903 -83 GGTGACCGGGCTGCCGTGACGAACCGGGGC 31 234 0 CTGCCGTGAC 0.518215 -67 AGCCCGGTCACCGCCCGGCCGCCGCGCTGG 31 252 1 CCGCCCGGCC 0.905894 -49 GGCCGCCGCGCTGGCGGCCCCGTACGACGG 31 268 1 CTGGCGGCCC 0.906828 -33 GCGTCTCCCCTTGCCGCGAGCGCGC 32 6 1 TCCCCTTGCC 0.181431 -110 GGCCGCCACTCCTTGCGCGAGG 32 104 0 CCGCCACTCC 0.569177 -12 CCCCCGCAAGCGGCAGGGACCCCCACCTCA 33 23 1 CGGCAGGGAC 0.433563 -131 CCTTCGTCGTCGCCCGCGCAGTCACAGTGT 33 63 1 CGCCCGCGCA 0.391606 -91 AGTGGTTCGGGCGACAGGCCTAGGATGTCG 33 115 1 GCGACAGGCC 0.217342 -39 CACGCCGGGGTTGGCTACCCGACAGGGCGC 34 31 0 TTGGCTACCC 0.182546 -45 TGGCACGCCTCGGGCACGCCGGGGTTGGCT 34 45 0 CGGGCACGCC 0.9478 -31 GTGTTTGAGTCTGGCACGCCTCGGGCACGC 34 56 0 CTGGCACGCC 0.945221 -20 GGGCCAGTAGCGCCCGACCCGAGCAATTCT 38 25 0 CGCCCGACCC 0.481916 -48 GCTACTGGCCCGGTCACGCCTACGAGGGGA 38 44 1 CGGTCACGCC 0.387172 -29 ********** Masking position 3 Map Score: 91.173 Number of sites scoring better than the average of aligned sites = 71646 Number in coding regions = 66538 Number in noncoding regions = 5108 Number of orfs with sites within 600 bp upstream = 1549 Fraction of orfs with sites within 600 bp upstream = 0.248795 Motif number 5 CACTTTCCTCGGGATCTGGCGG 1 3 1 CTTTCCTCGG 0.316318 -91 GACCACCTGGGATTCCTCGGGGATCCCCGA 3 163 0 GATTCCTCGG 0.0976312 -138 GACCACCGACCGTCGCGCGCCAGCAGGCAA 3 271 0 CGTCGCGCGC 0.828955 -30 GGCCTGATTCTGCTGGTCGGGATATTGCGT 6 98 0 TGCTGGTCGG 0.730659 -22 CCCGGCCTGCCGACCCTCGGCCGCCGGCGT 7 18 1 CGACCCTCGG 0.925815 -45 CGCGGCCGTTCGCCGAGGCTGTA 8 4 1 GGCCGTTCGC 0.665616 -92 CTCGTCGGGCTTCTGCTCGGCAACTACAGC 8 28 0 TTCTGCTCGG 0.531892 -68 ACCGGCACAGTGTCGCTCGGCAATGCGGTC 9 77 0 TGTCGCTCGG 0.89778 -195 TCGATCATGGCGCTGCTCGCAGTTCATCAC 9 110 0 CGCTGCTCGC 0.978038 -162 CAGTAATCATGGCCGCTGGGCGTCAGCCGG 9 221 0 GGCCGCTGGG 0.703773 -51 CATGAAGTCTGGTCCCTCGCATCTGATCTG 10 24 1 GGTCCCTCGC 0.925164 -168 GATATGCCGGCGATGCTCGGGATAACCCAC 10 120 1 CGATGCTCGG 0.924306 -72 CCAAGCTATCGGATGGTCGCGGCAGGAGGC 14 178 0 GGATGGTCGC 0.700473 -24 CGCGAGACGTTGACGCTCGGTGTGATCTTG 15 19 0 TGACGCTCGG 0.89778 -97 ATGCCAATGCCGTTTCTCGCTGACCGCGAG 15 43 0 CGTTTCTCGC 0.595679 -73 CATTGGCATTGGCTGCTCGCACAGCAACAC 15 64 1 GGCTGCTCGC 0.976858 -52 GGGTGTTATGGGCCGCTCGGCGCGC 17 6 0 GGCCGCTCGG 0.988792 -202 GAACGGGTGGGGCCTCTAGGTTTCGGAGGG 17 85 1 GGCCTCTAGG 0.156166 -123 CCTTGCGCGCCGCTTCGCGGCTGGGGGTGC 18 41 1 CGCTTCGCGG 0.461075 -100 AGCCCGACGACGATGCACGCCGCGCAAACG 18 83 0 CGATGCACGC 0.428537 -58 GCTACGCCCGGGCCGATCGGCGTATCTGGG 18 110 1 GGCCGATCGG 0.770576 -31 GCGTCCGCGCGGTCGCTCGTGCCCGACTCG 19 76 1 GGTCGCTCGT 0.617314 -149 AAACCCGCCACGATGCGCGCAATCGAAAAC 19 126 1 CGATGCGCGC 0.689363 -99 GCCCTGACCCTGATCCTCGGCCTCCCGACG 19 156 1 TGATCCTCGG 0.652945 -69 CCGCGCTCAGGTCCCGTCGGGAGGCCGAGG 19 170 0 GTCCCGTCGG 0.392569 -55 CCTGGATGTGTGTCGCTCCGGGCGCAGTGA 21 137 1 TGTCGCTCCG 0.465882 -127 CTCGATCGATCGTCGGTCGGCGCAGGTCCA 21 232 0 CGTCGGTCGG 0.837572 -32 GATAGCTAGGCTACTCGGCCGCCAGCGC 22 35 0 GGCTACTCGG 0.534976 -18 CCAGGGTGGTCGCCGCACGCCCGTATCCGC 23 35 0 CGCCGCACGC 0.851079 -34 CGGTCGCGGCCGGTGCTCGCCGGTTACCAT 25 90 0 CGGTGCTCGC 0.686588 -211 TGGAAGAAAATGCTCGTCGGGAGCAAATGG 25 207 0 TGCTCGTCGG 0.559334 -94 TCACTGGCGCCGCTCCTCCCCATCGCTTTG 26 52 0 CGCTCCTCCC 0.674196 -122 TCACTGGCGCCGCTCCTCCCCATCGCTTTG 26 105 0 CGCTCCTCCC 0.674196 -69 TGGCGCCGCTCCTCCCCATCGCTTTG 26 158 0 CGCTCCTCCC 0.674196 -16 TAGAGGTCCTCTCGGCTGTGTCCGG 27 6 1 GTCCTCTCGG 0.452 -129 CACCGCGGGTTGCCGATCGCGTACGGCGCA 27 36 0 TGCCGATCGC 0.549423 -99 AACGCTACCGCCACGCTCGGATAGGCCTAC 27 104 1 CCACGCTCGG 0.441261 -31 GCATGGTGGAGGACCCCCGCCACGTATTGA 28 51 0 GGACCCCCGC 0.529129 -27 CTGGGTCCGGCGTCGGTCGCTGCGAAGCAA 31 101 0 CGTCGGTCGC 0.84348 -200 GTACCAGTGCGGACCCTCGCGCAAGGAGTG 32 90 1 GGACCCTCGC 0.925164 -26 AGGCGCCGCTCTCCCCCGCAAGC 33 4 1 CGCCGCTCTC 0.649262 -150 TGGGGGTCCCTGCCGCTTGCGGGGGAGAGC 33 18 0 TGCCGCTTGC 0.367876 -136 CTCCCTTCGTCGTCGCCCGCGCAGTCACAG 33 60 1 CGTCGCCCGC 0.717009 -94 CATCCTGGCATGCTGCTCGCACAGTGGTTC 33 93 1 TGCTGCTCGC 0.936159 -61 CGACATCCTAGGCCTGTCGCCCGAACCACT 33 115 0 GGCCTGTCGC 0.672984 -39 ATGAATTCTTGGACGCGCGGCTGGTGTC 37 9 0 GGACGCGCGG 0.814669 -52 TCGGCGAAGTCCCCTCGTAGGCGTGACC 38 55 0 GTCCCCTCGT 0.175792 -18 ********** Masking position 8 Map Score: 50.3506 Number of sites scoring better than the average of aligned sites = 16717 Number in coding regions = 15377 Number in noncoding regions = 1340 Number of orfs with sites within 600 bp upstream = 846 Fraction of orfs with sites within 600 bp upstream = 0.135882 Motif number 6 TTCTATCGTTGCACCCCGGGCCATTCGTCGT 1 48 0 GCACCCGGGC 0.989442 -46 GCCTACCGCTGCACCTGCGGCGACGAATTG 3 10 0 GCACCTCGGC 0.979433 -291 GCGGTAGGCGTCACCGGCGCCAGCACAGTGG 3 32 1 TCACCGCGCC 0.819522 -269 CCCGGCCTGCCGACCCTCGGCCGCCGGCGTG 7 18 1 CGACCCCGGC 0.969157 -45 GGACGGTATGGTGCCCGGGGCCTTGGTCACA 9 192 0 GTGCCCGGGC 0.486535 -80 TCTGATCCGTTCACCCATGCCTGCCACAGTA 9 246 0 TCACCCTGCC 0.86965 -26 GGATTAGTCTTCACCCCGGCCTTCGGCCTGG 10 53 1 TCACCCGGCC 0.923295 -139 CCTGACCGATGCACCAGGGGCCACGTCGCGT 14 104 1 GCACCAGGGC 0.754933 -98 CAGACGAGATCCACCGCCCGCTCCGGAACCC 16 56 1 CCACCGCCGC 0.81516 -30 GCCCGCTCCGGAACCCCTGGCGCCG 16 71 1 GAACCCTGGC 0.824174 -15 CCAATGTTGAGCAACTCCGGCGCGCGGGTGT 17 30 0 GCAACTCGGC 0.672616 -178 GCGCATGGGGGCACCCCCAGCCGCGAAGCGG 18 50 0 GCACCCCAGC 0.942397 -91 CGACGACGATGCACGCCGCGCAAACGGCGCG 18 78 0 GCACGCGCGC 0.40279 -63 CCCACTCCGGCCACCTGTCGCGCCCTCAGAA 19 11 1 CCACCTTCGC 0.587256 -214 CGCACCTCCGCCCACCGGGACT 21 2 1 GCACCTCGCC 0.96478 -262 CGAGTTGGTGGCCCCGGCGGCCGTTGCCGAC 21 100 0 GCCCCGCGGC 0.601264 -164 TCCTGTCACTGCGCCCGGAGCGACACACATC 21 141 0 GCGCCCGAGC 0.540285 -123 CCTGGGTTCCGCACCCGGTGCGCGACCGTGT 21 188 1 GCACCCGTGC 0.572056 -76 CGGCGCAGGTCCACCTCTGGCCTATCACACG 21 214 0 CCACCTTGGC 0.881713 -50 CGTGCGGCGACCACCCTGGCAGACTGTGGGT 23 46 1 CCACCCGGCA 0.457289 -23 TTCGAACCACGCACCTGCGCTACCAGCCCCC 24 27 0 GCACCTCGCT 0.538869 -72 TAACCGGCGAGCACCGGCCGCGACCGCCTCT 25 94 1 GCACCGCCGC 0.867982 -207 CCGGCCGCGACCGCCTCTGCCTGCGGAAATG 25 107 1 CCGCCTTGCC 0.40581 -194 GCGACAGGACCCACCCACGGCCGGACGGTCC 25 162 0 CCACCCCGGC 0.99224 -139 GCAAATGGCACCAGCCGGGGCGGCGACAGGA 25 184 0 CCAGCCGGGC 0.686798 -117 CATCTTCGATTGACCCGCGCCGGCGACGATG 26 16 1 TGACCCCGCC 0.860663 -158 GCGGCGCCAGTGACCCGCGCCGGCGACGATG 26 69 1 TGACCCCGCC 0.860663 -105 GCGGCGCCAGTGACCCGCGCCGGCGACGATG 26 122 1 TGACCCCGCC 0.860663 -52 ACGCGATCGGCAACCCGCGGTGGCCAGCCGA 27 44 1 CAACCCCGGT 0.305222 -91 TCGGATAGGCCTACCCTTGGCTCTC 27 120 1 CTACCCTGGC 0.656068 -15 GCATGGTGGAGGACCCCCGCCACGTATTGAC 28 50 0 GGACCCCGCC 0.968399 -28 AGTCGAAGCAGAACCCGTGGCTGGGTCCGGC 31 120 0 GAACCCTGGC 0.824165 -181 CGTACTGGGGGCACCTCCCGCTTGCGGGGGA 32 40 0 GCACCTCCGC 0.901879 -76 CAAGCGGCAGGGACCCCCACCTCATCGTGCT 33 29 1 GGACCCCACC 0.69576 -125 TGTCGGGTAGCCAACCCCGGCGTGCCCGAGG 34 37 1 CCAACCCGGC 0.845076 -39 GTGTCAGCCCGCACCCTTGCCGGATCCTTGA 37 38 0 GCACCCTGCC 0.970677 -23 ****** **** Masking position 5 Map Score: 55.6876 Number of sites scoring better than the average of aligned sites = 12221 Number in coding regions = 11543 Number in noncoding regions = 678 Number of orfs with sites within 600 bp upstream = 512 Fraction of orfs with sites within 600 bp upstream = 0.0822358 Motif number 7 CGGGATCTGGCGGGACTACCTCGACAAGACGACG 1 20 1 CGGGCCTCGA 0.987209 -74 GACGAATGGCCCGGGGTGCAACGATAGAAGTTGC 1 50 1 CCGGGCACGA 0.902299 -44 CTGTGGCTGTCGGGTTCGCATCGAAGTCCCATGC 3 62 0 CGGGTCTCGA 0.899645 -239 TCTTCCCGTCGGGGCCGTCGCCAAACCCTATGTC 5 27 0 GGGGCCCCAA 0.641806 -33 ACGCGAAATGCGGGTGTATCTCGACTCGTCGTCA 6 48 0 CGGGGTTCGA 0.930625 -72 CGCGGCCGTTCGCCGAGGCTGTAGTT 8 3 1 CGGCGCCCGA 0.919017 -93 GCGCTGCTCGCAGTTCATCACCGAACCGGCACAG 9 97 0 CAGTCCCCGA 0.808508 -175 CTATTGTGTGCGGGTGAGCTCCGACCGCCCAGCC 16 23 1 CGGGGCCCGA 0.994287 -63 AGTCGTCAGGCTACAACCGATTGCCCGACT 18 7 1 CAGGTACCGA 0.235887 -134 CCGATCGGCCCGGGCGTAGCCCGACGACGATGCA 18 96 0 CGGGGGCCGA 0.929727 -45 GGATCAGGGTCAGGGCGTTTTCGATTGCGCGCAT 19 138 0 CAGGCTTCGA 0.691893 -87 GGTGGCCCCGGCGGCCGTTGCCGACACCTCGGCG 21 91 0 GCGGCTCCGA 0.713533 -173 GTGCGGAACCCAGGTGGATGTCGAAACCTATCCT 21 168 0 CAGGGTTCGA 0.673352 -96 GCCTATCACACGGTCGCGCACCGGGTGCGGAACC 21 192 0 CGGTGCCCGG 0.791592 -72 CCGGCGGATACGGGCGTGCGGCGACCACCCTGGC 23 32 1 CGGGGCGCGA 0.971905 -37 GGCATGGTAACCGGCGAGCACCGGCCGCGACCGC 25 87 1 CCGGGCCCGG 0.493121 -214 TGCGACGACCCCGGGGGGCTGCGACCCATTAAGT 25 254 1 CCGGGCGCGA 0.890388 -47 CGGGGCATCTTCGATTGACCCGCG 26 1 1 CGGGCCTCGA 0.987209 -173 TCGATTGACCCGCGCCGGCGACGATGCAGAGCAA 26 21 1 CGCGCCACGA 0.867413 -153 GCCAGTGACCCGCGCCGGCGACGATGCAGAGCAA 26 74 1 CGCGCCACGA 0.867413 -100 GCCAGTGACCCGCGCCGGCGACGATGCAGAGCAA 26 127 1 CGCGCCACGA 0.867413 -47 CGGCAACCCGCGGTGGCCAGCCGATTTACGTCGG 27 51 1 CGGTGACCGA 0.675037 -84 ACCCAGCCACGGGTTCTGCTTCGACTCGCACAGG 31 125 1 GGGTCCTCGA 0.72191 -176 CGATGAGGTGGGGGTCCCTGCCGCTTGCGGGGGA 33 22 0 GGGGCTCCGC 0.470743 -132 ACGCCTACGAGGGGACTTCGCCGA 38 59 1 GGGGCCCCGA 0.981792 -14 **** * * **** Masking position 12 Map Score: 34.3315 Number of sites scoring better than the average of aligned sites = 8334 Number in coding regions = 7766 Number in noncoding regions = 568 Number of orfs with sites within 600 bp upstream = 438 Fraction of orfs with sites within 600 bp upstream = 0.0703501 Motif number 8 CTTGCTGACCTGCAGCCACGAGGGCTGTGG 3 90 0 TGCAGCCACG 0.957013 -211 GATACGAATGACGAACTACGAGGCTGGGAC 3 120 0 ACGAACTACG 0.272297 -181 CCTCGGGGATCCCCGACACGGATGAGGGTG 3 149 0 CCCCGACACG 0.810985 -152 GCCGCCGGCGTGCCGCTACGTGATAGACAC 7 37 1 TGCCGCTACG 0.882948 -26 GCACGCCGTATGCCGCTACGCAACCATTTC 13 23 1 TGCCGCTACG 0.882948 -39 CCGATGCACCAGGGGCCACGTCGCGTCGCG 14 109 1 AGGGGCCACG 0.78297 -93 TGGGGGCACCCCCAGCCGCGAAGCGGCGCG 18 46 0 CCCAGCCGCG 0.942009 -95 TGCATCGTCGTCGGGCTACGCCCGGGCCGA 18 96 1 TCGGGCTACG 0.74499 -45 CCCACTCCGGCCACCTGTCGCGCCC 19 6 1 TCCGGCCACC 0.696791 -219 GGGCGCCGAGTCGCTCCACGAGTCGGGCAC 19 94 0 TCGCTCCACG 0.636734 -131 GCGCCCTCAAACCCGCCACGATGCGCGCAA 19 118 1 ACCCGCCACG 0.984564 -107 GAGAATGGGTCGCCGCCTCGCCGCGCTCAG 19 190 0 CGCCGCCTCG 0.763861 -35 TACCCTATCTTCGAACCACGCACCTGCGCT 24 37 0 TCGAACCACG 0.763554 -62 ACCGGCGAGCACCGGCCGCGACCGCCTCTG 25 96 1 ACCGGCCGCG 0.8814 -205 GGCGACAGGACCCACCCACGGCCGGACGGT 25 164 0 CCCACCCACG 0.821323 -137 TGGGTCCTGTCGCCGCCCCGGCTGGTGCCA 25 180 1 CGCCGCCCCG 0.811127 -121 TAGGGAACGCTACCGCCACGCTCGGATAGG 27 99 1 TACCGCCACG 0.837881 -36 GGTGGAGGACCCCCGCCACGTATTGACACT 28 47 0 CCCCGCCACG 0.991632 -31 CCAGCTTCCACCAACCACGAATCCAGAGA 30 10 1 ACCAACCACG 0.845884 -28 CGACGCCGGACCCAGCCACGGGTTCTGCTT 31 116 1 CCCAGCCACG 0.985074 -185 TTCAACATAGTCGCGCAACGGCCACCCCAC 31 184 0 TCGCGCAACG 0.636734 -117 GCCGTCCTCCAACTACGGTGTTGGTCA 35 12 0 TCCAACTACG 0.629336 -17 GACACCAGCCGCGCGTCCAAGAA 37 4 1 ACCAGCCGCG 0.910271 -57 ********** Masking position 9 Map Score: 28.4048 Number of sites scoring better than the average of aligned sites = 6508 Number in coding regions = 5972 Number in noncoding regions = 536 Number of orfs with sites within 600 bp upstream = 434 Fraction of orfs with sites within 600 bp upstream = 0.0697077 Motif number 9 TGACAGGCTACCGCCTGACCCTGCCGGCAG 2 15 0 CCGCCTGACC 0.918177 -22 CGCGCTGCTGCTGCCTGCCCTGCAACGA 4 51 1 CTGCCTGCCC 0.52583 -18 GACAACGCAATATCCCGACCAGCAGAATCA 6 94 1 TATCCCGACC 0.158604 -26 ACCGGGTCCCGGCCTGCCGACCCTCGGCC 7 10 1 CGGCCTGCCG 0.802611 -53 TGCCGAGCAGAAGCCCGACGAGTGGGACAC 8 36 1 AAGCCCGACG 0.463673 -60 CACAGAAAGCCGCCCGGGCGCCAACTCACG 9 156 1 CGCCCGGGCG 0.4994 -116 CGCTGGGCGTCAGCCGGACGGTATGGTGCC 9 208 0 CAGCCGGACG 0.962753 -64 CCCCGGCCTTCGGCCTGGCGATGCCGGCGC 10 66 1 CGGCCTGGCG 0.874249 -126 CCGGACCGTATGGCCGGGCCGCGC 12 5 0 TGGCCGGGCC 0.90016 -38 CAGAGTGTCACAGCCGGACCGTATGGCCGG 12 18 0 CAGCCGGACC 0.982579 -25 GCCGCTACACCGTCCTGACCGATGCACCAG 14 91 1 CGTCCTGACC 0.864537 -111 TCCGACCGCCCAGCCAGACGAGATCCACCG 16 42 1 CAGCCAGACG 0.851586 -44 CAATCGGTTGTAGCCTGACGACT 18 4 0 TAGCCTGACG 0.811977 -137 GGCCCGGGCGTAGCCCGACGACGATGCACG 18 94 0 TAGCCCGACG 0.665247 -47 CGTCGGGCTACGCCCGGGCCGATCGGCGTA 18 104 1 CGCCCGGGCC 0.809046 -37 CACGAGCGACCGCGCGGACGCCGCGGCACA 19 67 0 CGCGCGGACG 0.816162 -158 CAATCGAAAACGCCCTGACCCTGATCCTCG 19 145 1 CGCCCTGACC 0.976271 -80 TGCAACCAGTCGCCCAAACCGTAGCAAGGA 21 39 1 CGCCCAAACC 0.406357 -225 CCTGTCACTGCGCCCGGAGCGACACACATC 21 141 0 CGCCCGGAGC 0.757887 -123 CCTGTTAGCACAGGCTGCCCTAATTTTAGT 24 70 0 CAGGCTGCCC 0.421908 -29 GACCCACCCACGGCCGGACGGTCCGCGGAC 25 156 0 CGGCCGGACG 0.576285 -145 CTAGTAAATGTAGCCTAACCTACTTAATGG 25 279 0 TAGCCTAACC 0.285988 -22 TCATACAATTCGCCGGGACGCGCAATCCCC 31 67 1 CGCCGGGACG 0.50919 -234 GCAGCGACCGACGCCGGACCCAGCCACGGG 31 108 1 ACGCCGGACC 0.568695 -193 AGGTATGCACCAGCCTGACCCCGGGAATGT 31 156 1 CAGCCTGACC 0.970042 -145 GCCAGCGCGGCGGCCGGGCGGTGACCGGGC 31 253 0 CGGCCGGGCG 0.508905 -48 CTAGGCCTGTCGCCCGAACCACTGTGCGAG 33 108 0 CGCCCGAACC 0.8547 -46 TGTGTAACGGCGCCCTGTCGGGTAGCCAAC 34 22 1 CGCCCTGTCG 0.707432 -54 ********** Masking position 5 Map Score: 41.7971 Number of sites scoring better than the average of aligned sites = 11040 Number in coding regions = 10369 Number in noncoding regions = 671 Number of orfs with sites within 600 bp upstream = 489 Fraction of orfs with sites within 600 bp upstream = 0.0785416 Motif number 10 AGTCCCATGCCACTGTGCTGGCGCCGGTGAC 3 41 0 CACTGTGCGG 0.974299 -260 CCTCGGCCGCCGGCGTGCCGCTACGTGATAG 7 32 1 CGGCGTGCGC 0.929239 -31 TGCCGAGCGACACTGTGCCGGTTCGGTGATG 9 85 1 CACTGTGCGG 0.974299 -187 CCGCGAAACCCGCTGTGAAGGTGGGTTATCC 10 139 0 CGCTGTGAGG 0.91304 -53 TCGGTCAGGACGGTGTAGCGGCCTTGCGGAT 14 82 0 CGGTGTAGGG 0.602845 -120 CGGCTCCGGTCTCCGTCCCGGGGGGTGTTGC 15 87 0 CTCCGTCCGG 0.69363 -29 TGAGCAACTCCGGCGCGCGGGTGTTATGGGC 17 23 0 CGGCGCGCGG 0.970266 -185 GCTTTTTGTTCGCTGTGTAGGTGGTTGAGTG 17 123 1 CGCTGTGTGG 0.91304 -85 GATAGCGTCGCGGTGTGCCGCGGCGTCCGCG 19 54 1 CGGTGTGCGC 0.850323 -171 CGATTGCGCGCATCGTGGCGGGTTTGAGGGC 19 120 0 CATCGTGGGG 0.541844 -105 CCGTCCACCGTACGGGAGAATGGGTC 19 209 0 CACCGTACGG 0.94943 -16 TCAATTTAGACGCTGTGCCGGCGGATACGGG 23 15 1 CGCTGTGCGG 0.99174 -54 TGGGTCCTGTCGCCGCCCCGGCTGGTGCCAT 25 180 1 CGCCGCCCGG 0.915145 -121 GTGTCCGGTGCGCCGTACGCGATCGGCAACC 27 28 1 CGCCGTACCG 0.871563 -107 GGGGGTCCTCCACCATGCTGGAGCC 28 63 1 CACCATGCGG 0.777021 -15 TGTTGAAGGTCACTGTGACGGCCCGAAGCCC 31 207 1 CACTGTGAGG 0.768256 -94 ACCGCCCGGCCGCCGCGCTGGCGGCCCCGTA 31 261 1 CGCCGCGCGG 0.986808 -40 CTCCATGATCCGTCGTACGGGGCCGCCAGCG 31 276 0 CGTCGTACGG 0.85576 -25 ATCGGTGTGTCGGCGTACTGGGGGCACCTCC 32 53 0 CGGCGTACGG 0.962879 -63 TCGCCCGAACCACTGTGCGAGCAGCATGCCA 33 98 0 CACTGTGCAG 0.613316 -56 TGTGTAACGGCGCCCTGTCGGGTAGCCAACC 34 22 1 CGCCCTGTGG 0.588559 -54 TAGCCAACCCCGGCGTGCCCGAGGCGTGCCA 34 44 1 CGGCGTGCCG 0.932504 -32 ******** ** Masking position 1 Map Score: 35.2976 Number of sites scoring better than the average of aligned sites = 8536 Number in coding regions = 8022 Number in noncoding regions = 514 Number of orfs with sites within 600 bp upstream = 393 Fraction of orfs with sites within 600 bp upstream = 0.0631224 Motif number 11 ACCCCGGGCCATTCGTCGTCTTGTCGAGGT 1 37 0 ATTCGTCGTC 0.897096 -57 CAATTCGTCGCCGCAGGTGCAG 3 3 1 ATTCGTCGCC 0.909899 -298 GTGTATCTCGACTCGTCGTCAGATGTTACC 6 39 0 ACTCGTCGTC 0.93201 -81 ATCTGCACGGCATCGGCGGCGTCAAGTGCG 10 93 0 CATCGGCGGC 0.954199 -99 TTATCCCGAGCATCGCCGGCATATCTGCAC 10 115 0 CATCGCCGGC 0.885997 -77 GCGCGGCGTGCATCGTCGTCGGGCTACGCC 18 88 1 CATCGTCGTC 0.988294 -53 TCGTGGAGCGACTCGGCGCCCTCAAACCCG 19 103 1 ACTCGGCGCC 0.88909 -122 TGACCCTGATCCTCGGCCTCCCGACGGGAC 19 160 1 CCTCGGCCTC 0.883856 -65 CTTTGCTCTGCATCGTCGCCGGCGCGGGTC 26 27 0 CATCGTCGCC 0.989879 -147 CTTTGCTCTGCATCGTCGCCGGCGCGGGTC 26 80 0 CATCGTCGCC 0.989879 -94 CTTTGCTCTGCATCGTCGCCGGCGCGGGTC 26 133 0 CATCGTCGCC 0.989879 -41 CATCGTCCTCTCTGGATTCG 30 28 0 CATCGTCCTC 0.960109 -10 ACCCCCACCTCATCGTGCTCTCCCTTCGTC 33 41 1 CATCGTGCTC 0.684685 -113 CGTGCTCTCCCTTCGTCGTCGCCCGCGCAG 33 54 1 CTTCGTCGTC 0.971122 -100 ********** Masking position 3 Map Score: 26.4184 Number of sites scoring better than the average of aligned sites = 2854 Number in coding regions = 2648 Number in noncoding regions = 206 Number of orfs with sites within 600 bp upstream = 173 Fraction of orfs with sites within 600 bp upstream = 0.0277867 Motif number 12 CTGCGAGCAGCGCCATGATCGAGTACGCGG 9 118 1 CGCCATGATC 0.84073 -154 AGGATCACTACGCTTGGAGCCC 11 3 0 CGCTTGGAGC 0.892613 -75 CGCTCCGGAACCCCTGGCGCCG 16 74 1 CCCCTGGCGC 0.951218 -12 TGTTATGGGCCGCTCGGCGCGC 17 3 0 CGCTCGGCGC 0.907715 -205 GATTGCCCGACTCCTTGCGCGCCGCTTCGC 18 29 1 CTCCTTGCGC 0.956279 -112 CCTTGCGCGCCGCTTCGCGGCTGGGGGTGC 18 41 1 CGCTTCGCGG 0.670704 -100 CTGGGGGTGCCCCCATGCGCGCCGTTTGCG 18 61 1 CCCCATGCGC 0.909618 -80 GTCGCCGCCTCGCCGCGCTCAGGTCCCGTC 19 182 0 CGCCGCGCTC 0.867995 -43 CCTGTCACTGCGCCCGGAGCGACACACATC 21 141 0 CGCCCGGAGC 0.852279 -123 TTCTGTTGACTCCTCGATCGATCGTCGGT 21 245 0 CTCCTCGATC 0.748378 -19 TCCTCCCCATCGCTTTGCTCTGCATCGTCG 26 39 0 CGCTTTGCTC 0.950416 -135 TCCTCCCCATCGCTTTGCTCTGCATCGTCG 26 92 0 CGCTTTGCTC 0.950416 -82 TCCTCCCCATCGCTTTGCTCTGCATCGTCG 26 145 0 CGCTTTGCTC 0.950416 -29 GGAACGCTACCGCCACGCTCGGATAGGCCT 27 102 1 CGCCACGCTC 0.947322 -33 GATAGGCCTACCCTTGGCTCTC 27 123 1 CCCTTGGCTC 0.832496 -12 CTTTCTAGAACTCTATGGGC 29 1 0 CTCTATGGGC 0.456438 -30 CTCGCTCCATGATCCGTCGTACGG 31 287 0 CTCCATGATC 0.605562 -14 GGCCGCCACTCCTTGCGCGAGGGTCCGC 32 98 0 CTCCTTGCGC 0.956279 -18 GAGTCTGGCACGCCTCGGGCACGCCGGGGT 34 50 0 CGCCTCGGGC 0.924748 -26 ********** Masking position 7 Map Score: 23.947 Number of sites scoring better than the average of aligned sites = 4416 Number in coding regions = 4022 Number in noncoding regions = 394 Number of orfs with sites within 600 bp upstream = 292 Fraction of orfs with sites within 600 bp upstream = 0.0469001 Motif number 13 ACGACTGCCGGCAGGGTCAGGCGGTA 2 7 1 GCCGGCAGGG 0.84867 -30 TCAGGCGGTAGCCTGTCACG 2 27 1 GCCTGTCACG 0.826978 -10 CTGTGCTGGCGCCGGTGACGCCTACCGCTG 3 30 0 GCCGGTGACG 0.951434 -271 CGCGACCACCGACCGTCGCGCGCCAGCAGG 3 274 0 GACCGTCGCG 0.709765 -27 CGCGACGGTCGGTGGTCGCGCTAGCGT 3 284 1 GGTGGTCGCG 0.765872 -17 GCCTGATTCTGCTGGTCGGGATATTGCGTT 6 97 0 GCTGGTCGGG 0.649629 -23 CGCGGCCGTTCGCCGAGGCTGTAG 8 5 1 GCCGTTCGCC 0.639484 -91 CGTCAAGTGCGCCGGCATCGCCAGGCCGAA 10 74 0 GCCGGCATCG 0.737725 -118 CAAGCTATCGGATGGTCGCGGCAGGAGGCA 14 177 0 GATGGTCGCG 0.731512 -25 GGAGACCGGAGCCGGTCACGGA 15 104 1 GCCGGTCACG 0.982715 -12 TCGATCACAAGACGGTAACGAACCGGCCAA 17 57 0 GACGGTAACG 0.786882 -151 CCCCATGCGCGCCGTTTGCGCGGCGTGCAT 18 71 1 GCCGTTTGCG 0.715755 -70 CACTCCGGCCACCTGTCGCGCCCTCAGAAG 19 13 1 ACCTGTCGCG 0.361608 -212 AGGTGTAGCTGCCGATAGCGTCGCGGTGTG 19 41 1 GCCGATAGCG 0.895818 -184 CTGTCACTGCGCCCGGAGCGACACACATCC 21 140 0 GCCCGGAGCG 0.671793 -124 TGGCCTATCACACGGTCGCGCACCGGGTGC 21 198 0 CACGGTCGCG 0.532608 -66 AGGCTACTCGGCCGCCAGCGCACGGCTGGG 22 26 0 GCCGCCAGCG 0.933246 -27 TAACAGGGGGGCTGGTAGCGCAGGTGCGTG 24 21 1 GCTGGTAGCG 0.931507 -78 GCCGGTGCTCGCCGGTTACCATGCCCGCCA 25 82 0 GCCGGTTACC 0.526706 -219 CGCAGGCAGAGGCGGTCGCGGCCGGTGCTC 25 102 0 GGCGGTCGCG 0.964814 -199 ATTGACCCGCGCCGGCGACGATGCAGAGCA 26 24 1 GCCGGCGACG 0.915091 -150 AGTGACCCGCGCCGGCGACGATGCAGAGCA 26 77 1 GCCGGCGACG 0.915091 -97 AGTGACCCGCGCCGGCGACGATGCAGAGCA 26 130 1 GCCGGCGACG 0.915091 -44 ACCGCGGGTTGCCGATCGCGTACGGCGCAC 27 35 0 GCCGATCGCG 0.937256 -100 ATCCGAGCGTGGCGGTAGCGTTCCCTAGAC 27 96 0 GGCGGTAGCG 0.948399 -39 GTCGTACGGGGCCGCCAGCGCGGCGGCCGG 31 266 0 GCCGCCAGCG 0.933246 -35 GTCTCCCCTTGCCGCGAGCGCGCGTGTTCC 32 13 1 GCCGCGAGCG 0.810205 -103 GGGGGTCCCTGCCGCTTGCGGGGGAGAGCG 33 17 0 GCCGCTTGCG 0.881683 -137 GACATCCTAGGCCTGTCGCCCGAACCACTG 33 114 0 GCCTGTCGCC 0.695901 -40 GCGTGACCGGGCCAGTAGCGCCCGACCCGA 38 33 0 GCCAGTAGCG 0.817379 -40 ********** Masking position 9 Map Score: 48.3589 Number of sites scoring better than the average of aligned sites = 17477 Number in coding regions = 16463 Number in noncoding regions = 1014 Number of orfs with sites within 600 bp upstream = 730 Fraction of orfs with sites within 600 bp upstream = 0.11725 Motif number 14 AACCGCCCACCGGCCTGGGGGTTTACCAGA 3 243 0 CGGCCTGGGG 0.540966 -58 ACAGCCTCGGCGAACGGCCGCG 8 3 0 CGAACGGCCG 0.770888 -93 CTCCGGTCTCCGTCCCGGGGGGTGTTGCTG 15 85 0 CGTCCCGGGG 0.954002 -31 GCAACTCCGGCGCGCGGGTGTTATGGGCCG 17 21 0 CGCGCGGGTG 0.844599 -187 AAGACGGTAACGAACCGGCCAATGTTGAGC 17 49 0 CGAACCGGCC 0.624832 -159 GTCTTGTGATCGAACGGGTGGGGCCTCTAG 17 74 1 CGAACGGGTG 0.915772 -134 GCAAACGGCGCGCATGGGGGCACCCCCAGC 18 60 0 CGCATGGGGG 0.787428 -81 CCGTCCACCGTACGGGAGAATGGGTCGC 19 207 0 CGTACGGGAG 0.882857 -18 CACACGGTCGCGCACCGGGTGCGGAACCCA 21 190 0 CGCACCGGGT 0.673447 -74 CGGCCGCCAGCGCACGGCTGGGCAGACGGG 22 18 0 CGCACGGCTG 0.7337 -35 GCAGCCTGTGCTAACAGGGGAGGGTTT 24 82 1 CTAACAGGGG 0.385049 -17 TTGCCGATCGCGTACGGCGCACCGGACACA 27 27 0 CGTACGGCGC 0.825795 -108 GGGGATTGCGCGTCCCGGCGAATTGTATGA 31 67 0 CGTCCCGGCG 0.843765 -234 GCTGCCGTGACGAACCGGGGCTTCGGGCCG 31 225 0 CGAACCGGGG 0.968056 -76 CATGATCCGTCGTACGGGGCCGCCAGCGCG 31 274 0 CGTACGGGGC 0.960093 -27 GCACCTCCCGCTTGCGGGGGAACACGCGCG 32 31 0 CTTGCGGGGG 0.856777 -85 GGTGTGTCGGCGTACTGGGGGCACCTCCCG 32 51 0 CGTACTGGGG 0.935461 -65 GTCCCTGCCGCTTGCGGGGGAGAGCGGCGC 33 13 0 CTTGCGGGGG 0.856777 -141 CCCGGTCACGCCTACGAGGGGACTTCGCCG 38 52 1 CCTACGAGGG 0.283737 -21 ********** Masking position 1 Map Score: 14.293 Number of sites scoring better than the average of aligned sites = 4016 Number in coding regions = 3620 Number in noncoding regions = 396 Number of orfs with sites within 600 bp upstream = 322 Fraction of orfs with sites within 600 bp upstream = 0.0517186 Motif number 15 GAATGACGAACTACGAGGCTGGGACCTTGCTG 3 113 0 CTAGAGGTGG 0.653626 -188 GCGAAACCCGCTGTGAAGGTGGGTTATCCCGA 10 136 0 CTGGAAGTGG 0.985868 -56 TGATGAGAGTCGGAGAAGTTGGGAGCGGTAG 14 10 0 CGGGAAGTGG 0.980264 -192 TTTTTGTTCGCTGTGTAGGTGGTTGAGTGTTG 17 125 1 CTGGTAGTGG 0.962315 -83 ATCGGCGTATCTGGGAAGATGGTTCG 18 125 1 CTGGAAGTGG 0.985868 -16 GCGGGGACATCGGTGCAGTCGGCCGTCCTTGC 21 62 0 CGGGCAGCGG 0.923627 -202 CAGCGCACGGCTGGGCAGACGGGGTCAAGC 22 9 0 CTGGCAGCGG 0.944394 -44 CAGGTGCGTGGTTCGAAGATAGGGTAACCACT 24 41 1 GTTGAAGTAG 0.513821 -58 CAAAACCTTGCTTTGTAGCTAGCCAGTAAACG 25 15 1 CTTGTAGTAG 0.591315 -286 ATTCGTGGTTGGTGGAAGCTGG 30 1 0 GGTGAAGTGG 0.813185 -37 *** **** *** Masking position 5 Map Score: 3.23572 Number of sites scoring better than the average of aligned sites = 1011 Number in coding regions = 934 Number in noncoding regions = 77 Number of orfs with sites within 600 bp upstream = 80 Fraction of orfs with sites within 600 bp upstream = 0.0128493