AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00230_mtub_reg_300.orf -o00230_mtub_300.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: nrdZ 25 nrdZ Input sequences: #1 dnaN 300 dnaN #2 fadE4 94 fadE4 #3 Rv0232 134 hypothetical protein Rv0232 #4 purA 90 purA #5 Rv0567 281 hypothetical protein Rv0567 #6 Rv0568 109 hypothetical protein Rv0568 #7 Rv0569 134 hypothetical protein Rv0569 #8 rpoB 300 rpoB #9 rpoC 44 rpoC #10 secY 160 secY #11 aldA 201 aldA #12 Rv0769 30 hypothetical protein Rv0769 #13 Rv0770 97 hypothetical protein Rv0770 #14 purB 244 purB #15 purC 50 purC #16 purQ 300 purQ #17 purL 191 purL #18 Rv0807 300 hypothetical protein Rv0807 #19 purF 86 purF #20 purM 30 purM #21 Rv0954 164 hypothetical protein Rv0954 #22 Rv0955 39 hypothetical protein Rv0955 #23 purN 115 purN #24 prsA 91 prsA #25 glmU_Rv1019 254 glmU: glmU, Rv1019: hypothetical protein Rv1019 #26 mfd 58 mfd #27 lpqU 87 lpqU #28 eno 96 eno #29 Rv1284 206 hypothetical protein Rv1284 #30 cysD 93 cysD #31 mIHF 300 mIHF #32 gmk 134 gmk #33 Rv1543 227 hypothetical protein Rv1543 #34 Rv1545 21 hypothetical protein Rv1545 #35 Rv1546 48 hypothetical protein Rv1546 #36 dnaE1 67 dnaE1 #37 Rv1615 300 hypothetical protein Rv1615 #38 pykA 107 pykA #39 polA 103 polA #40 guaB1 32 guaB1 #41 gnd 29 gnd #42 Rv1846c_Rv1847 277 Rv1846c: hypothetical protein Rv1846c, Rv1847: hypothetical protein Rv1847 #43 ureA 48 ureA #44 nrdF 224 nrdF #45 Rv1982c 300 hypothetical protein Rv1982c #46 dgt 68 dgt #47 Rv2406c 259 hypothetical protein Rv2406c #48 ndkA 42 ndkA #49 valS 87 valS #50 Rv2449c 89 hypothetical protein Rv2449c #51 Rv2450c 81 hypothetical protein Rv2450c #52 relA 30 relA #53 apt 103 apt #54 secD 109 secD #55 Rv2588c 166 hypothetical protein Rv2588c #56 gpsI 300 gpsI #57 nrdG 130 nrdG #58 Rv3049c 133 hypothetical protein Rv3049c #59 Rv3050c 127 hypothetical protein Rv3050c #60 nrdE 65 nrdE #61 nrdI 34 nrdI #62 nrdH 300 nrdH #63 deoD 64 deoD #64 cdd 236 cdd #65 dnaE2 191 dnaE2 #66 phyA 28 phyA #67 idsA 22 idsA #68 guaB2 206 guaB2 #69 rpoA 151 rpoA #70 rpsM 215 rpsM #71 rpmJ 32 rpmJ #72 infA 253 infA #73 Rv3627c 137 hypothetical protein Rv3627c #74 Rv3644c 85 hypothetical protein Rv3644c #75 dnaQ 251 dnaQ #76 dnaZX 89 dnaZX #77 Rv3722c 300 hypothetical protein Rv3722c Motif number 1 TGACCCGCCACGACGGCCGCAACAGCAGTC 1 194 0 CGACGGCCGC 0.716158 -107 TGCCCATGACGCGTGACCCGCCACGACGGC 1 207 0 GCGTGACCCG 0.507396 -94 CGATCCCGTGGCTAGCGCCCCGCTAGCGTG 1 255 0 GCTAGCGCCC 0.611351 -46 GTCACTGATGCTAGGCCGCAATCGGTGTC 2 10 1 GCTAGGCCGC 0.769753 -85 TCGGTGTCTTGCGGGGCCGCAGTGCAGTAG 2 32 1 GCGGGGCCGC 0.92225 -63 AAGAATTGGCTCCCGAGCGGTTCGGTCAAC 2 75 0 TCCCGAGCGG 0.708945 -20 GGTCTCGCAGGCTATGCCCGCTTATTGTGG 4 56 0 GCTATGCCCG 0.636977 -35 GCGGCAGGTTGCCCGAGCGGCCAATGGGAG 5 78 1 GCCCGAGCGG 0.958571 -204 CGTGGCCATGCCCGGCGCCCATGCCCGGAT 5 177 0 CCCGGCGCCC 0.763724 -105 CGCCGGGCATGGCCACGCCCGCGCGTTGGT 5 190 1 GGCCACGCCC 0.854167 -92 TTGGAGTGCGGGTGTCGCGCCGCTGTCTAC 5 242 0 GGTGTCGCGC 0.736616 -40 AATGACATGGTGGGTGGCCGACCAACGTGA 6 16 1 TGGGTGGCCG 0.512843 -94 GGGACCCGCTGGGCGACCCCATGCGGATAC 7 20 0 GGGCGACCCC 0.516057 -115 AAAGTCCCCTCGGGACCCGCTGGGCGACCC 7 31 0 CGGGACCCGC 0.753076 -104 GTGGCCTACTGCCCTCCCGCCGTTGCGCCG 7 76 1 GCCCTCCCGC 0.943918 -59 GCCCTCCCGCCGTTGCGCCGGGTGCGTGCA 7 86 1 CGTTGCGCCG 0.458157 -49 GAGATCGCCAGCTAGCGCCGATATCCGGGG 8 14 1 GCTAGCGCCG 0.780784 -287 CCAACAATAGCGCAGGACGGCGCATTCCTC 8 64 0 CGCAGGACGG 0.567071 -237 TTCCTGCCCACCTCACCCGCCACTTGACAC 8 110 1 CCTCACCCGC 0.711848 -191 CAACTAAACCGCTGAGCCGCAAACTGGGCT 8 155 0 GCTGAGCCGC 0.68738 -146 AAAATTATCGCGGCGAACGGGCCCGTGGGC 8 228 1 CGGCGAACGG 0.525129 -73 AACTCCCTTTCCCCTAACGGGTTTAGTAAT 9 23 0 CCCCTAACGG 0.482941 -22 CCCTTCGATAGCTCGCACCGTGGCGGCCCG 10 18 1 GCTCGCACCG 0.743939 -143 CTCGCACCGTGGCGGCCCGGAACGGGCCAG 10 29 1 GGCGGCCCGG 0.974738 -132 CAGCTGGTATGGACTGGCCCGTTCCGGGCC 10 42 0 GGACTGGCCC 0.468471 -119 GGACGTACGGCGTCGCGCGCCAAATCGTGT 10 82 0 CGTCGCGCGC 0.845683 -79 CTATCCTCCTGCGCAGCCCGGGGTCATCTT 10 140 0 GCGCAGCCCG 0.953056 -21 GGGGCCACGTCGCGTCGCGGACAGTCCCAT 11 73 0 CGCGTCGCGG 0.88864 -129 CGGTCAGGACGGTGTAGCGGCCTTGCGGAT 11 111 1 GGTGTAGCGG 0.690252 -91 CCGGCGCCGGCGCCGATGCAGAGCG 13 6 1 GCCGGCGCCG 0.933982 -92 GCCCCCACCTCATCGCCCCGCTCTGCATCG 13 24 0 CATCGCCCCG 0.61327 -74 GCGATGAGGTGGGGGCACGCCCCCACAAGT 13 38 1 GGGGGCACGC 0.4874 -60 GTACCCCCATCCGCTGGCGGGGGAGAGCGG 13 73 1 CCGCTGGCGG 0.927309 -25 CCGCTGGCGGGGGAGAGCGGCGCTC 13 83 1 GGGAGAGCGG 0.871263 -15 CCAGGGTATGGCGGGGCCGCGGCGTATGTG 14 15 1 GCGGGGCCGC 0.92225 -230 TAGCGACATCGCCCGGGCGGCACCGGGACC 14 106 1 GCCCGGGCGG 0.987893 -139 TCGGCAACGCCCGGTCCCGGTGCCGCCCGG 14 118 0 CCGGTCCCGG 0.500305 -127 TCGGGTGCTCCCTGGCGCCGGGACTCGTGT 14 171 1 CCTGGCGCCG 0.77998 -74 GATACCAGCACAGGGCGCCGTCGTGCGGCG 15 17 1 CAGGGCGCCG 0.616527 -34 GCCCGGCTCCTGGCGGCCGCTGTCGCCGGG 16 15 1 TGGCGGCCGC 0.841483 -286 GATCTGCCCGCCGCGCCCGGCGACAGCGGC 16 30 0 CCGCGCCCGG 0.505245 -271 CTCCTCCTCAGATCTGCCCGCCGCGCCCGG 16 40 0 GATCTGCCCG 0.540652 -261 GCATGTGATGCCCAAGGCGGAGATTCTTGA 16 92 1 CCCAAGGCGG 0.675702 -209 CACCGACAATCGCCTGGCCCTGCGGGTCAA 16 118 0 CGCCTGGCCC 0.820948 -183 TTGTCGGTGCGCTGGGGCGGCTTGGGCATC 16 139 1 GCTGGGGCGG 0.93805 -162 CAAACCTCTTGCCCTGACGCACATCTGATA 16 175 0 GCCCTGACGC 0.691661 -126 TGCGGGTCCCGGCTGATCGTCC 16 289 0 CGGGTCCCGG 0.513113 -12 CATCCTGAGCGCCCGCCCCGATGTCAGCCC 17 31 1 GCCCGCCCCG 0.974073 -161 CCGACGGATAGGTATGCCCGCGGCAAGAAC 17 80 0 GGTATGCCCG 0.647846 -112 AGGCAGTCTAGCTAGGCCCCATCGCGCTGC 17 131 0 GCTAGGCCCC 0.659278 -61 CGCGGGGTCCGGGCGAGCGGAGACATCACG 17 162 0 GGGCGAGCGG 0.530917 -30 TCCCTGAGTTCCCAAGGCGGTGA 18 4 0 CCCAAGGCGG 0.675702 -297 GGTCAACCTGCGCCGACCCGCGATCTGTGA 18 60 0 CGCCGACCCG 0.915749 -241 CAGGTTGACCGCGCTGGCGCGGGGTCCATA 18 80 1 GCGCTGGCGC 0.924452 -221 GATCTAAGAACATCGGCCGGAAACCTGGTT 18 159 1 CATCGGCCGG 0.726098 -142 ACTTGACATGGCGCGGCCGCAACAACCAGG 18 182 0 GCGCGGCCGC 0.947476 -119 TCCAGATGGCGGCCAAGCGCCGCTGCTGAG 18 251 0 GGCCAAGCGC 0.775433 -50 AGCCGCAGCTCAGCACGCCGGAA 19 4 0 CAGCACGCCG 0.521883 -83 CTTACGTGTCGGGCACCCCGGCGCCACCCT 19 44 0 GGGCACCCCG 0.942378 -43 CAAAACGCACGCGCGGTAGCCTTTAT 20 7 1 GCACGCGCGG 0.876744 -24 CACCTGCGCCGGGCAAGCGGCCGTCCAGTC 21 32 1 GGGCAAGCGG 0.899994 -133 CGTTAATGTCGCGAGCGCCGGTCGCTCCGG 21 61 1 GCGAGCGCCG 0.877854 -104 CGTTCGGGTGCCGCTGCCGGAGCGACCGGC 21 77 0 CCGCTGCCGG 0.951026 -88 TTGATCGAATCGCGTCGCCGGGAGCACAGC 21 120 1 CGCGTCGCCG 0.82736 -45 CCGGGCGTTCCCGCGTCCGGTCGC 22 5 1 GCGTTCCCGC 0.468089 -35 TCGCGCACACGCGCGACCGGACGCGGGAAC 22 17 0 GCGCGACCGG 0.539312 -23 TCTGCGGTTGGTGAGGCCGCAACTGTCTG 23 10 1 GGTGAGGCCG 0.703842 -106 AGTCGCATCCCGGCTACCCGGCGACAAATC 24 11 1 CGGCTACCCG 0.528455 -81 GTACGTAGCGCACCGCCCGGATTTGTCGCC 24 30 0 CACCGCCCGG 0.876598 -62 CGCGCTGCCCTCGCCGTTTGGGATCG 24 76 0 GCCCTCGCCG 0.944488 -16 CCTGGCGCGCGTCACCCGCG 25 1 1 CCTGGCGCGC 0.711825 -254 CGCCGGAAAACCCGACGCGGGTGACGCGCG 25 16 0 CCCGACGCGG 0.845583 -239 TGTTGATGTGGCCGGACCGGATAAAGGGCC 25 54 0 GCCGGACCGG 0.941499 -201 TATCGGTTTGCGTGGGGCCGGTGGGTAGAC 25 88 1 CGTGGGGCCG 0.827553 -167 CACAGTCAACGCTGTCGCCGTCTACCCACC 25 107 0 GCTGTCGCCG 0.776774 -148 CGGGCGGGGAAGCCGGGCCCAATGTT 26 7 1 GGGAAGCCGG 0.874152 -52 ATGATCGTGACGGAAGCCGGTATAGGTGCC 27 53 1 CGGAAGCCGG 0.783849 -35 CGTAAAGCCTGGGTTAGCGGTTCATCCTG 28 10 0 GGGTTAGCGG 0.47135 -87 TCTTGGGTTGGCTGGCCCCGACCGCTGTTA 28 41 0 GCTGGCCCCG 0.90821 -56 CGTAGCTGCTGCACGGACGGTCTTGGGTTG 28 61 0 GCACGGACGG 0.559965 -36 CCTGTCCCAATGCGACGCGGTGGTTGGGC 29 10 0 TGCGACGCGG 0.481635 -197 GGACAGGGTAGCGAGCCCGGCGATGGCGTG 29 33 1 GCGAGCCCGG 0.940529 -174 ATCAACCGGCGCGCTGGCGGCACGCCATCG 29 53 0 GCGCTGGCGG 0.963206 -154 TCCGGATCACGGGTGACCCCATCAACCGGC 29 73 0 GGGTGACCCC 0.38818 -134 ATCAGAATCGGCCCGAGCGGAACCATCCGG 29 98 0 GCCCGAGCGG 0.958571 -109 CGTGAAAACTGGGTAACCGGTTGTTAAAAT 29 129 1 GGGTAACCGG 0.516593 -78 GGCCTCCTCGGGTATCGCGGTGTGGACTTT 29 184 0 GGTATCGCGG 0.721021 -23 CGATACCCGAGGAGGCCCGC 29 197 1 GGAGGCCCGC 0.696162 -10 CAGCCCGAGCCGTCAGCCTAGG 30 3 1 GCCCGAGCCG 0.935393 -91 AGCCTAGGGCGCACTGGCGCACCGGCAGCC 30 25 1 GCACTGGCGC 0.592234 -69 CCATCTCGGCGGGCTGCCGGTGCGCCAGTG 30 36 0 GGGCTGCCGG 0.978786 -58 CGATGATGCTGAGCACCCGCGTTTGGGGCA 31 73 1 GAGCACCCGC 0.669788 -228 ACCTATCGCGCGTGTCGCGCCATGGTTGCG 31 174 0 CGTGTCGCGC 0.589726 -127 GCGATAGGTCGCCCAACCGCGAGTGATCCC 31 195 1 GCCCAACCGC 0.807194 -106 GTCGCAACTCGCAGTGCCGGGGATCACTCG 31 214 0 GCAGTGCCGG 0.667472 -87 GTTGCGACGCCACCTGCCGCCACCAGTCGT 31 236 1 CACCTGCCGC 0.548716 -65 CGTCGGCCGTCGTCGACCGGTTGAGCAGGT 31 263 1 CGTCGACCGG 0.881018 -38 CGGCCCGCATCGTCGGCCGGCGGGG 32 6 0 CGTCGGCCGG 0.956423 -129 CGGCCGACGATGCGGGCCGGAAGGCCTGTG 32 17 1 TGCGGGCCGG 0.815536 -118 GCCTGTGGTGGGCGTACCCCCGCATACGGG 32 40 1 GGCGTACCCC 0.652707 -95 TGTCAGGCCGCCTCTCCCCCGTATGCGGGG 32 57 0 CCTCTCCCCC 0.678776 -78 CCTGAATTGTGAGCTGGCCCTGTCAGGCCG 32 77 0 GAGCTGGCCC 0.580648 -58 TCACAATTCAGGCCGAACGCCCCGTGGGGG 32 95 1 GGCCGAACGC 0.673816 -40 CGCCCCGTGGGGGGAACCCGCCCAGGAGCG 32 112 1 GGGGAACCCG 0.776954 -23 ATGCCGGCGTTGCCTGCCGGTTAGGTCGCG 33 25 1 TGCCTGCCGG 0.786674 -203 TTGGTCGCCGCACCGGCCGGTAGTGGACTC 33 128 1 CACCGGCCGG 0.873001 -100 GTGTCCATCACCCCACGCCGCCATCAGGAG 33 199 1 CCCCACGCCG 0.868436 -29 CAGGCCGGAACGCCCCTCACA 34 9 0 GCCGGAACGC 0.485909 -13 GGGCCATAGCGCACGGCCCGCTTCGTCGCC 35 12 1 GCACGGCCCG 0.857969 -37 TTTGCGACACGCCCGAACGGTGTCGGTCCT 36 27 1 GCCCGAACGG 0.816677 -41 CAGTCTATGACCGAGGACCGACACCGTTCG 36 40 0 CCGAGGACCG 0.485655 -28 CTCCAATCCCGCACAGCCGCGACCAACTCG 37 20 1 GCACAGCCGC 0.543697 -281 AGCGACAGCTGCCTGACCGGCGGTTTTGTT 37 52 0 GCCTGACCGG 0.751119 -249 GCACATCGGGTGTCGCCCGGTGCAGTGACA 37 91 1 TGTCGCCCGG 0.785869 -210 GTTGTGAGGCGGGCAACCGGTGCACCTCCG 37 202 0 GGGCAACCGG 0.923109 -99 ACATGCTGAGGCGCACACGGTCGCTCGCAG 37 233 1 GCGCACACGG 0.812149 -68 ACACGGTCGCTCGCAGCCGGGCACAACGAA 37 247 1 TCGCAGCCGG 0.747738 -54 GAACACTCCTGCTCTGCCGCGCCGATGTTG 37 274 1 GCTCTGCCGC 0.876471 -27 CCGCGCCTACCCGCGGTCTGGTT 38 4 1 CGCCTACCCG 0.821591 -104 CTGGTTGGCTGGGCTGCCCGCGGTGGTGTT 38 28 1 GGGCTGCCCG 0.966476 -80 TTGACCGGTGTGCCGACCCGGCGGTGCCGG 38 56 1 TGCCGACCCG 0.652658 -52 TGCCGACCCGGCGGTGCCGGCCCTACCGCC 38 66 1 GCGGTGCCGG 0.954637 -42 GTCCAGCCTACCGAGCCCGGGCGTAAAACT 39 13 1 CCGAGCCCGG 0.884988 -91 TTGGTGCACGGGGCTCGCCCGTTGGTGTAG 42 21 0 GGGCTCGCCC 0.499834 -257 CCAAGGCACGGGGCTCGCCGATCGAGTCGA 42 47 1 GGGCTCGCCG 0.531164 -231 GTGTAATGTTTGCGAGCCGGGTGCATAGGC 42 172 1 TGCGAGCCGG 0.533293 -106 GTATCCAAACCGGCGGGCGGCCGTACCGGG 42 201 0 CGGCGGGCGG 0.933304 -77 TCTGCGATCCTGCCACGCCGCGGCAGGTTC 43 27 0 TGCCACGCCG 0.528298 -22 GCCCAAGGACCGACTGCCGGACTTGACGCC 44 145 1 CGACTGCCGG 0.695889 -80 ACCATGGCAAGGCAGGACGGCCCTCG 44 209 1 GGCAGGACGG 0.715012 -16 GTACCATCTACCTGTGGCGCTGAATATCAA 45 29 1 CCTGTGGCGC 0.583178 -272 CCGCCGAACTCGCTGACCGGCTGCACACCA 45 82 1 CGCTGACCGG 0.623 -219 GGGCAGACAGGGCATGCCGGATGGCGGCAG 45 118 0 GGCATGCCGG 0.891801 -183 CCTCACGGTCGCCGGCGCGCGACTCCAAAA 45 157 0 GCCGGCGCGC 0.903669 -144 GCTTGGTGATGGGGGAGCGGTCGGCAAGCA 45 226 0 GGGGGAGCGG 0.515367 -75 CCATCACCAAGCTCGAGCGCGAACAAATCC 45 244 1 GCTCGAGCGC 0.818091 -57 GGCTACGACCCCGCAACCGGAGTCTGAGCA 45 276 1 CCGCAACCGG 0.847146 -25 CAATTTAGACGCTGTGCCGGCGGATACGGG 46 16 1 GCTGTGCCGG 0.885243 -53 AGGGTGGTCGCCGCACGCCCGTATCCGCCG 46 33 0 CCGCACGCCC 0.669333 -36 AATCGGTCGATCGGGGCCGCTGGATCCATC 47 31 0 TCGGGGCCGC 0.708532 -229 ACAACGCCCATGTCGGCCGCATCCTCGAGG 47 85 0 TGTCGGCCGC 0.61063 -175 TCGGTAGCTGCGTAGCCCGGGCAGGAATTC 47 123 0 CGTAGCCCGG 0.810685 -137 CATCTAGCACCCGAACCCGCAGGTGCCCGG 47 156 0 CCGAACCCGC 0.612111 -104 GGCGGGAAAGCCGATACCGGAATATGCGGC 47 185 0 CCGATACCGG 0.648954 -75 CAAGGCCTCCCGCCGGTGGTGAG 47 247 0 GGCCTCCCGC 0.94867 -13 AAGATGTATGCCCAAACCGG 48 1 0 CCCAAACCGG 0.482908 -42 GGCAGGGTGAGGGCTGGCGGTCACCGATCA 49 62 0 GGGCTGGCGG 0.970012 -26 GCGTCTGCTCGCGCACCCCGGAGTAGCGTC 50 64 1 GCGCACCCCG 0.930625 -26 TGGCAGCTAACCCATGCCCGTGGGTTGGCT 51 31 1 CCCATGCCCG 0.70374 -51 GTTGGCTTTGGCGCGCGCGCACCGCGAAAG 51 54 1 GCGCGCGCGC 0.499798 -28 TCCTCTCCCAGACAGCCCGGAGCACCTGCG 53 83 0 GACAGCCCGG 0.719732 -21 CGTCGGTTCCGGTCGGCCGGTTGCCGG 54 8 0 GGTCGGCCGG 0.976767 -102 GGGGCGCGTCGCGCAAGCGGCTCGTCGGTT 54 30 0 GCGCAAGCGG 0.888623 -80 TACGTGTCGCGCCGGGGCGCGTCGCGCAAG 54 43 0 GCCGGGGCGC 0.945435 -67 CCTCCTCACCCGGCTCGCCGGTTCACATCG 55 15 1 CGGCTCGCCG 0.500293 -152 CGTCCAGTCTGGCAGGCCGGAAACATCGGT 55 65 0 GGCAGGCCGG 0.95366 -102 GTTACCAGGTGCGCGGCCCGCGGGTAGGCC 55 108 1 GCGCGGCCCG 0.966897 -59 CACGGTGCCAGGCCTACCCGCGGGCCGCGC 55 118 0 GGCCTACCCG 0.89839 -49 TATTGGTATTGCGATCACGGTGCCAGGCCT 55 133 0 GCGATCACGG 0.563182 -34 CATTTGCTGGGCCGAACCGGCCCAGAACGT 56 21 0 GCCGAACCGG 0.819873 -280 CGCGGTTCTGCGCGTACCGCACCATTTGCT 56 43 0 CGCGTACCGC 0.627619 -258 CGCTGGAACGGCACACGCGGTTCTGCGCGT 56 58 0 GCACACGCGG 0.686857 -243 ATATCCAAGGGAGCACCCCCGGCCTGTATC 56 99 1 GAGCACCCCC 0.540023 -202 GCAGCCACTACCGAGGACCGCCCGATACAG 56 122 0 CCGAGGACCG 0.485655 -179 TCCTCGGTAGTGGCTGCCGGGCTCTCCGGA 56 135 1 TGGCTGCCGG 0.828042 -166 ATCTGGGGCAGGTCGGCCGCTTCGATCGAT 56 164 1 GGTCGGCCGC 0.9489 -137 TCGATCGATGGCCGTAGCCGCATTCAGACC 56 185 1 GCCGTAGCCG 0.759686 -116 GCAATCCAGCGGGTTCGCCGAACCCCGAGA 56 231 0 GGGTTCGCCG 0.501469 -70 TGTTTCGCGTCGTCACGCGCAATCCAGCGG 56 249 0 CGTCACGCGC 0.670784 -52 AATCCAGAGAGGCCGCACGGACGTC 56 286 1 GGCCGCACGG 0.931249 -15 ACTTTCACTCTGGCGCGCCGGTG 59 4 0 TGGCGCGCCG 0.817657 -124 AAGTGGCGACGGCTTCGCGGCGTGTCGCGT 59 30 1 GGCTTCGCGG 0.745057 -98 CCTCCGGCGCGCACGCCTCTTACTCT 60 7 1 GCGCGCACGC 0.512217 -59 CTCTTACTCTGGGGGGCCGGGCGAAACGGA 60 27 1 GGGGGGCCGG 0.971017 -39 GCACCTAGGGGGTGGCACGGAGAAGAGATA 62 46 0 GGTGGCACGG 0.716999 -255 GTGAACCTGGGATCTGCCGGTACTCGAAAA 62 94 0 GATCTGCCGG 0.670359 -207 GGGAAGTTCATCGCGCCCCGTGGATCTGGT 62 132 0 TCGCGCCCCG 0.844965 -169 CCTGGCGATGCCGATGCCGGGAAGTTCATC 62 150 0 CCGATGCCGG 0.842731 -151 TCGATATGTTGAGCGGCCCGACAAGGCTCC 62 213 0 GAGCGGCCCG 0.908665 -88 GGGCGTACCGCTCCTTTGCGG 62 290 0 GGCGTACCGC 0.764127 -11 TCTCATCGACGAGCACCCGCTCCCCGGCGA 63 21 1 GAGCACCCGC 0.669788 -44 ACCCGCTCCCCGGCGAGCGGCTCAGTTAAG 63 35 1 CGGCGAGCGG 0.50457 -30 CTGTATCGGGGAGATCCCGGT 64 2 0 GAGATCCCGG 0.573208 -235 TACAGGGTCCGAGGTGGCCGCCGCCCGCGC 64 27 1 GAGGTGGCCG 0.600859 -210 CAACCGTCTCGCGCGGGCGGCGGCCACCTC 64 37 0 GCGCGGGCGG 0.951403 -200 CTATCGAACAGCTAGAGCCGGGCAATCGAG 64 106 1 GCTAGAGCCG 0.54857 -131 AACTTGGCCAGGTTGCCCGCGGTGTCGAAC 64 139 1 GGTTGCCCGC 0.611926 -98 TCGGCAACCCCGCTCGTCGATG 64 225 0 GGCAACCCCG 0.760885 -12 ATAAGTGTCCGCCGGACCGCACCGGAAGCA 65 45 1 GCCGGACCGC 0.877611 -147 GAAGCAGAAGGCCCAAACGGTTAAGAACAT 65 69 1 GCCCAAACGG 0.536118 -123 CCGCCCAGCTCGGCGGCCCGTTGCTCCACC 65 170 0 CGGCGGCCCG 0.950995 -22 GCCAGCGTGTGGTCAGCCCGACACGAAGCG 68 60 0 GGTCAGCCCG 0.86286 -147 GCGCGCCGCAGCGCTGGCCGAGAAGAACCG 68 115 0 GCGCTGGCCG 0.946822 -92 CGGCCAGCGCTGCGGCGCGCATCGTCACCG 68 125 1 TGCGGCGCGC 0.613511 -82 CGCGCATCGTCACCGGGCGGTTACGAGCCG 68 140 1 CACCGGGCGG 0.843936 -67 CGGTGGGGCCCTCCATACGCA 68 196 0 GGTGGGGCCC 0.802372 -11 CCAACCCTCGGGGGGCGCCGCCCCCCGAGT 69 13 1 GGGGGCGCCG 0.504025 -139 CCAACCCTCGGGGGGCGCCGCCCCCCGAGT 69 53 1 GGGGGCGCCG 0.504025 -99 CCCCACCCTCGGGGGCGCCGCCCCCGAGTG 69 85 1 GGGGGCGCCG 0.504025 -67 CGGACCACTACGCGGCCCGCATCGTCGCCG 70 13 0 CGCGGCCCGC 0.898101 -203 AGGAGGAGCCGGACGGCCCGACAACTAAAT 70 43 1 GGACGGCCCG 0.863644 -173 TCTCCATCGATGCCAGCCGCTCATTGGTGC 70 84 0 TGCCAGCCGC 0.512443 -132 GGGCGTGAATGAGCTGGCCCATCTCCATCG 70 105 0 GAGCTGGCCC 0.580648 -111 GCTCATTCACGCCCGGACGGAGGCCGGGCC 70 121 1 GCCCGGACGG 0.926908 -95 CCCGGACGGAGGCCGGGCCCCACACCCAAA 70 132 1 GGCCGGGCCC 0.956353 -84 TCTAACCGCTCGGCTCACCGGTGCTATTCC 72 17 1 CGGCTCACCG 0.487747 -237 AAACGCCGTAGGCCACGCGCTCACCGGAAT 72 42 0 GGCCACGCGC 0.910056 -212 CCACATTACCCGCATCGCCGTGCTCTGCGC 72 73 0 CGCATCGCCG 0.66942 -181 CGGGTAATGTGGGTTGGCGGTGCGGTGTCC 72 91 1 GGGTTGGCGG 0.786264 -163 GGTGCGGTGTCCCGTGCCGGTTTGGCGTGC 72 109 1 CCCGTGCCGG 0.912602 -145 TTTCTCGGAGCCCTTCGCGGAATTTCCACC 72 152 1 CCCTTCGCGG 0.59184 -102 GGACTACAAACGTGAGCCGGTGGTGGAAAT 72 173 0 CGTGAGCCGG 0.731551 -81 CGCCGGAATCGGGTGCACCGACAAGGAAGA 72 215 1 GGGTGCACCG 0.405372 -39 GGACGCATTGGACCTGCCCGTTGTCCCATG 73 36 0 GACCTGCCCG 0.753211 -102 TGGCAGCGTCGCCCGGCCGGTTCGGCAGAA 73 93 1 GCCCGGCCGG 0.990462 -45 CGCCGAGCTTGCGATCGCCCGTAAACTGCC 75 14 0 GCGATCGCCC 0.65841 -238 GGGCGACCCGCCGCACCCGGCGACAAGCGC 75 41 0 CCGCACCCGG 0.901344 -211 AATCCAACGCGGGCGACCCGCCGCACCCGG 75 51 0 GGGCGACCCG 0.558981 -201 CGCCGAGCTTGCGATCGCCCTGAATCCAAC 75 73 0 GCGATCGCCC 0.65841 -179 GGGCGACCCGCCGCACCCGGCGACAAGCGC 75 100 0 CCGCACCCGG 0.901344 -152 AATCCAACGCGGGCGACCCGCCGCACCCGG 75 110 0 GGGCGACCCG 0.558981 -142 CGCCGAGCTTGCGATCGCCCTGAATCCAAC 75 132 0 GCGATCGCCC 0.65841 -120 GGGCGACCCGCCGCACCCGGCGACAAGCGC 75 159 0 CCGCACCCGG 0.901344 -93 ACCCGGACGCGGGCGACCCGCCGCACCCGG 75 169 0 GGGCGACCCG 0.558981 -83 CTACGCATCGTGTCGGCCCGTAAAACCCGG 75 193 0 TGTCGGCCCG 0.672684 -59 GGCGTGATTTCGGCGCGCGGGTTCCCGCTC 76 11 0 CGGCGCGCGG 0.503041 -79 CGCAGCATATGGTAGCCCGCTGAGTCCGTC 77 13 1 GGTAGCCCGC 0.783675 -288 GGCTGGAACGCCCGGGACGGACTCAGCGGG 77 28 0 CCCGGGACGG 0.760707 -273 ACAGGATAGACGCCGCGCGGGGTCCACCGT 77 72 0 CGCCGCGCGG 0.953522 -229 GGGCTCTGTCGGGTGCGCGGGGTCCCCTTC 77 138 1 GGGTGCGCGG 0.549185 -163 TCGAACGACACCGTGGGCCCTTTCGCCGAG 77 211 0 CCGTGGGCCC 0.525402 -90 TAGCCCCCAAGAGCTAGCGGCACTACACGC 77 247 1 GAGCTAGCGG 0.653456 -54 ********** Masking position 8 Map Score: 258.472 Number of sites scoring better than the average of aligned sites = 118630 Number in coding regions = 110472 Number in noncoding regions = 8158 Number of orfs with sites within 600 bp upstream = 1734 Fraction of orfs with sites within 600 bp upstream = 0.278509 Motif number 2 CAGCGAACGATCCCCAGCGCTGTCTTTCCA 1 74 0 TCCCCAGCGC 0.797997 -227 TTGACCGAACCGCTCGGGAGCCAATTCTT 2 76 1 CGCTCGGGAG 0.69911 -19 GTAGGGTAGGTCACCGGCTGGACCACAATA 4 34 1 TCACCGGCTG 0.546519 -57 GGCGTGGCCATGCCCGGCGCCCATGCCCGG 5 179 0 TGCCCGGCGC 0.988275 -103 CCTCAGTTCACGCTCGGCGCTTTGAGCAAC 6 65 1 CGCTCGGCGC 0.991728 -45 CGCATGGGGTCGCCCAGCGGGTCCCGAGGG 7 25 1 CGCCCAGCGG 0.927731 -110 GCCAAAAGTCCCCTCGGGACCCGCTGGGCG 7 35 0 CCCTCGGGAC 0.676442 -100 GGACTTTTGGCCACCGGCGCTGGTGGCCTA 7 54 1 CCACCGGCGC 0.947277 -81 ATCGTGCACGCACCCGGCGCAACGGCGGGA 7 90 0 CACCCGGCGC 0.873385 -45 CCATCCCCGGATATCGGCGCTAGCTGGCGA 8 18 0 ATATCGGCGC 0.522484 -283 GGGCAGGAAGTAGCCAGCGCAACGTCCAAC 8 89 0 TAGCCAGCGC 0.375335 -212 CTGCCCACCTCACCCGCCACTTGACACCGT 8 113 1 CACCCGCCAC 0.592879 -188 CCGGACAGATCGTTCGCCGGCCGAAACCGA 8 197 1 CGTTCGCCGG 0.864974 -104 CCCACGGGCCCGTTCGCCGCGATAATTTTG 8 227 0 CGTTCGCCGC 0.90722 -74 AGAGGAGCGGTGCCCACGGGCCCGTTCGCC 8 239 0 TGCCCACGGG 0.575531 -62 AGCTATCGGATGGTCGCGGCAGGAGGCAAG 11 18 1 TGGTCGCGGC 0.87609 -184 CCGGCGCCGGCGCCGATGCAGAG 13 4 1 GCGCCGGCGC 0.462434 -94 TGGGGGCGTGCCCCCACCTCATCGCCCCGC 13 33 0 CCCCCACCTC 0.526968 -65 CCGCTCTCCCCCGCCAGCGGATGGGGGTAC 13 73 0 CCGCCAGCGG 0.759523 -25 CACAGCACATACGCCGCGGCCCCGCCATAC 14 20 0 ACGCCGCGGC 0.847431 -225 ATAGCGACATCGCCCGGGCGGCACCGGGAC 14 105 1 CGCCCGGGCG 0.476442 -140 ACACAGCTTACGGTCGCGGGCCTAGTAGTC 14 210 0 CGGTCGCGGG 0.932621 -35 CGCGCCAGCCTATCCGCCGCACGACGGCGC 15 31 0 TATCCGCCGC 0.521234 -20 CATTGCCCGGCTCCTGGCGGCCG 16 4 1 TGCCCGGCTC 0.928898 -297 CCGGCGACAGCGGCCGCCAGGAGCCGGGCA 16 14 0 CGGCCGCCAG 0.772007 -287 CTGGCGGCCGCTGTCGCCGGGCGCGGCGGG 16 24 1 CTGTCGCCGG 0.83071 -277 TCCTCAGATCTGCCCGCCGCGCCCGGCGAC 16 36 0 TGCCCGCCGC 0.981296 -265 ACCACCCTGGCCACCGGCGCTCCTCCTCAG 16 59 0 CCACCGGCGC 0.947277 -242 CGTCGGGCTGACATCGGGGCGGGCGCTCAG 17 35 0 ACATCGGGGC 0.645002 -157 CGGATAGGTATGCCCGCGGCAAGAACCCCG 17 76 0 TGCCCGCGGC 0.963354 -116 AGAATCTCACAGATCGCGGGTCGGCGCAGG 18 54 1 AGATCGCGGG 0.554469 -247 CGTGTCGGGCACCCCGGCGCCACCCTCACA 19 40 0 ACCCCGGCGC 0.966559 -47 ACGTAAGCCGAATTCGGCGGTGCAGACGTC 19 67 1 AATTCGGCGG 0.259039 -20 GACGGCCGCTTGCCCGGCGCAGGTGGAACA 21 27 0 TGCCCGGCGC 0.988275 -138 GCTGCCGGAGCGACCGGCGCTCGCGACATT 21 65 0 CGACCGGCGC 0.982709 -100 CGCTAGCGCACGTTCGGGTGCCGCTGCCGG 21 87 0 CGTTCGGGTG 0.444352 -78 CCGGGCGTTCCCGCGTCCGGTCGCGCG 22 8 1 TTCCCGCGTC 0.417161 -32 CCGCCCGGATTTGTCGCCGGGTAGCCGGGA 24 18 0 TTGTCGCCGG 0.621457 -74 TGGCGCGCGTCACCCGCGTCGGGTTTTCCG 25 13 1 CACCCGCGTC 0.655763 -242 CGCGTCGGGTTTTCCGGCGCCTTATCCGGC 25 27 1 TTTCCGGCGC 0.665129 -228 ATGTTGACTAACCTCGGCGCCCTAGAATGG 26 32 1 ACCTCGGCGC 0.938015 -27 TACCCCGTCGCACTCGGGGCGG 27 3 0 CACTCGGGGC 0.905198 -85 ACGCTAACAGCGGTCGGGGCCAGCCAACCC 28 37 1 CGGTCGGGGC 0.971416 -60 GCCCAACCACCGCGTCGCATTGGGAC 29 7 1 CCACCGCGTC 0.629436 -200 TGGCGGCACGCCATCGCCGGGCTCGCTACC 29 39 0 CCATCGCCGG 0.873189 -168 GTGACCCCATCAACCGGCGCGCTGGCGGCA 29 61 0 CAACCGGCGC 0.902356 -146 CGGATGGTTCCGCTCGGGCCGATTCTGATG 29 99 1 CGCTCGGGCC 0.723337 -108 TTGTTAAAATTCACCGCGGCGTCGATCTGA 29 149 1 TCACCGCGGC 0.787542 -58 ACGCAGCCCCATCTCGGCGGGCTGCCGGTG 30 44 0 ATCTCGGCGG 0.749487 -50 TCGAGAGCTATCGTCAGGGCAATGTCCGAT 31 47 1 TCGTCAGGGC 0.347426 -254 CCGCGAGTGATCCCCGGCACTGCGAGTTGC 31 211 1 TCCCCGGCAC 0.745887 -90 CCCGCATCGTCGGCCGGCGGGG 32 3 0 CGGCCGGCGG 0.581933 -132 TGGCCCTGTCAGGCCGCCTCTCCCCCGTAT 32 63 0 AGGCCGCCTC 0.742795 -72 GGGCGGGTTCCCCCCACGGGGCGTTCGGCC 32 105 0 CCCCCACGGG 0.704495 -30 AACAGATCCTTGGTCGCCGCACCGGCCGGT 33 119 1 TGGTCGCCGC 0.93382 -109 TGTCCATCACCCCACGCCGCCATCAGGAGC 33 200 1 CCCACGCCGC 0.49638 -28 GCCCGCTTCGTCGCCGGCGCTAGTCTCATG 35 27 1 TCGCCGGCGC 0.960067 -22 AACGCCCGCCTCCAATCCCGCA 37 3 1 CGCCCGCCTC 0.960044 -298 GTTCCCGAGTTGGTCGCGGCTGTGCGGGAT 37 25 0 TGGTCGCGGC 0.87609 -276 GACAGCTGCCTGACCGGCGGTTTTGTTCCC 37 49 0 TGACCGGCGG 0.930342 -252 ACACCCGATGTGCCCGGCTCTCAGCGACAG 37 74 0 TGCCCGGCTC 0.928898 -227 CATCGGGTGTCGCCCGGTGCAGTGACACAT 37 94 1 CGCCCGGTGC 0.791289 -207 ATGTGCCCGACCCTCGGTGCGCACCAATTT 37 144 1 CCCTCGGTGC 0.533267 -157 GTGCACCGGTTGCCCGCCTCACAACGACAT 37 207 1 TGCCCGCCTC 0.889417 -94 GTGTTCGTTGTGCCCGGCTGCGAGCGACCG 37 250 0 TGCCCGGCTG 0.894401 -51 GCGTTCCCAACATCGGCGCGGCAGAGCAG 37 282 0 ACATCGGCGC 0.783831 -19 CCAGCCAACCAGACCGCGGGTAGGCGCGG 38 10 0 AGACCGCGGG 0.723629 -98 CCGGTCAACACCACCGCGGGCAGCCCAGCC 38 34 0 CCACCGCGGG 0.875451 -74 AGGGCCGGCACCGCCGGGTCGGCACACCGG 38 60 0 CCGCCGGGTC 0.609496 -48 CCGATCGAGTCGACCGGGGGTCACTGCAGC 42 64 1 CGACCGGGGG 0.895627 -214 CGAGCCACAACGACCGCGGCCGAGTCCTGA 42 96 0 CGACCGCGGC 0.94956 -182 CGGGCCTATGCACCCGGCTCGCAAACATTA 42 175 0 CACCCGGCTC 0.832129 -103 CCGGTACGGCCGCCCGCCGGTTTGGATACG 42 202 1 CGCCCGCCGG 0.987373 -76 ACCGTTGAACCTGCCGCGGCGTGGCAGGAT 43 21 1 CTGCCGCGGC 0.887201 -28 TTACAAACAGCGATCACCGCGCATACGG 44 9 0 CGATCACCGC 0.584376 -216 CCGGTCAGCGAGTTCGGCGGCTAGTCGGTC 45 72 0 AGTTCGGCGG 0.688464 -229 CCGAACTCGCTGACCGGCTGCACACCAGCA 45 85 1 TGACCGGCTG 0.672276 -216 TTGTGCCTCACGGTCGCCGGCGCGCGACTC 45 162 0 CGGTCGCCGG 0.965062 -139 ACGCCCGTATCCGCCGGCACAGCGTCTAAA 46 19 0 CCGCCGGCAC 0.630261 -50 TCTGCCAGGGTGGTCGCCGCACGCCCGTAT 46 39 0 TGGTCGCCGC 0.93382 -30 CCGAATCGGTCGATCGGGGCCGCTGGATCC 47 34 0 CGATCGGGGC 0.935658 -226 GACATGGGCGTTGTCGGCGGCCGAATTCCT 47 101 1 TTGTCGGCGG 0.727351 -159 AACCCGCAGGTGCCCGGCGGTCGGTAGCTG 47 143 0 TGCCCGGCGG 0.978233 -117 GGTATCGGCTTTCCCGCCGCCCGAGTTCGC 47 197 1 TTCCCGCCGC 0.903076 -63 AACCAGCTCACCACCGGCGGGAGGCCTTG 47 241 1 CCACCGGCGG 0.65595 -19 TGCGCGACGCGCCCCGGCGCGACACGTAGG 54 45 1 GCCCCGGCGC 0.546269 -65 CACGTAGGCTCTGTCGGGGGTAGAAAACTG 54 67 1 CTGTCGGGGG 0.789615 -43 AGATCCTCCTCACCCGGCTCGCCGGTTCAC 55 11 1 CACCCGGCTC 0.832129 -156 GTGCCAGGCCTACCCGCGGGCCGCGCACCT 55 114 0 TACCCGCGGG 0.73146 -53 CGCCCGATACAGGCCGGGGGTGCTCCCTTG 56 104 0 AGGCCGGGGG 0.89616 -197 AGATCCGGAGAGCCCGGCAGCCACTACCGA 56 138 0 AGCCCGGCAG 0.674557 -163 GTCGCGAATCCGCTCGCCTGTTTCGCCGG 57 10 0 CGCTCGCCTG 0.882167 -121 ACCTTGTCGGACCCCAGGGGTAGTGTTTGA 57 68 1 ACCCCAGGGG 0.451318 -63 GCGATGTCAACGGCCGCCGCGC 58 3 0 CGGCCGCCGC 0.98867 -131 GCTTCAGTCACCCTCGCCGGCGCAAATACC 58 78 0 CCCTCGCCGG 0.966222 -56 TGAAGCGCCAAACTCGCCGCTGAACAGGAA 58 102 1 AACTCGCCGC 0.714553 -32 CGCCGCGAAGCCGTCGCCACTTTCACTCTG 59 22 0 CCGTCGCCAC 0.593079 -106 CAGTCTGCCCAGGTCAGCGCTTGCAACGCG 59 94 1 AGGTCAGCGC 0.533924 -34 CCTCCGGCGCGCACGCCTCT 60 1 1 CCTCCGGCGC 0.948106 -65 TAGTCCGTTTCGCCCGGCCCCCCAGAGTAA 60 30 0 CGCCCGGCCC 0.865072 -36 CGCGTTCAGCGCGTGATAGTCC 60 54 0 CGTTCAGCGC 0.555761 -12 TTAACTGAGCCGCTCGCCGGGGAGCGGGTG 63 34 0 CGCTCGCCGG 0.979927 -31 GGGTCCGAGGTGGCCGCCGCCCGCGCGAGA 64 31 1 TGGCCGCCGC 0.967412 -206 TAAGCTCGATTGCCCGGCTCTAGCTGTTCG 64 110 0 TGCCCGGCTC 0.928898 -127 GGACTGTTCGACACCGCGGGCAACCTGGCC 64 144 0 ACACCGCGGG 0.606445 -93 CAGGTATAAGTGTCCGCCGGACCGCACCGG 65 40 1 TGTCCGCCGG 0.818465 -152 TTCCGCCCAGCTCGGCGGCCCGTTGCTC 65 174 0 AGCTCGGCGG 0.943959 -18 CGGTTCTTCTCGGCCAGCGCTGCGGCGCGC 68 115 1 CGGCCAGCGC 0.918957 -92 GAAGCCCATCCTATCGGCTCGTAACCGCCC 68 154 0 CTATCGGCTC 0.441404 -53 ACCCAACCCTCGGGGGGCGCCGCCCC 69 7 1 CCCTCGGGGG 0.871318 -145 GGTTGGGGGGTACTCGGGGGGCGGCGCCCC 69 24 0 TACTCGGGGG 0.677847 -128 CCCAACCCAACCCTCGGGGGGCGCCGCCCC 69 47 1 CCCTCGGGGG 0.871318 -105 AGGGTGGGGGTACTCGGGGGGCGGCGCCCC 69 64 0 TACTCGGGGG 0.677847 -88 AGTACCCCCACCCTCGGGGGCGCCGCCCCC 69 80 1 CCCTCGGGGG 0.871318 -72 TCTGTGGGGGCACTCGGGGGCGGCGCCCCC 69 95 0 CACTCGGGGG 0.848503 -57 GTTGTCGGGCCGTCCGGCTCCTCCTCGGAC 70 38 0 CGTCCGGCTC 0.836708 -178 TTGCTCTAACCGCTCGGCTCACCGGTGCTA 72 13 1 CGCTCGGCTC 0.948884 -241 GTAGGCCACGCGCTCACCGGAATAGCACCG 72 35 0 CGCTCACCGG 0.793589 -219 GGAATTTCCACCACCGGCTCACGTTTGTAG 72 170 1 CCACCGGCTC 0.840143 -84 GGTGCACCCGATTCCGGCGCAGCACGTGCT 72 204 0 ATTCCGGCGC 0.557597 -50 GTGGCAGCGTCGCCCGGCCGGTTCGGCAGA 73 92 1 CGCCCGGCCG 0.544033 -46 TGATCGGTATCTGTCGGCGCGGATAGCTAC 74 55 1 CTGTCGGCGC 0.923877 -31 GGCGATCGCAAGCTCGGCGCTTGTCGCCGG 75 25 1 AGCTCGGCGC 0.962568 -227 AGCTCGGCGCTTGTCGCCGGGTGCGGCGGG 75 35 1 TTGTCGCCGG 0.621457 -217 GGCGATCGCAAGCTCGGCGCTTGTCGCCGG 75 84 1 AGCTCGGCGC 0.962568 -168 AGCTCGGCGCTTGTCGCCGGGTGCGGCGGG 75 94 1 TTGTCGCCGG 0.621457 -158 GGCGATCGCAAGCTCGGCGCTTGTCGCCGG 75 143 1 AGCTCGGCGC 0.962568 -109 AGCTCGGCGCTTGTCGCCGGGTGCGGCGGG 75 153 1 TTGTCGCCGG 0.621457 -99 TGCGGCGGGTCGCCCGCGTCCGGGTTTTAC 75 174 1 CGCCCGCGTC 0.923315 -78 GTTCGGCGTGATTTCGGCGCGCGGGTTCCC 76 15 0 ATTTCGGCGC 0.374637 -75 TGGGCTGGAACGCCCGGGACGGACTCAGCG 77 30 0 CGCCCGGGAC 0.865411 -271 CCTGTGAACTCCCCCAGGGCTGGAAGGCAG 77 97 1 CCCCCAGGGC 0.853585 -204 TCAACGGGCTCTGTCGGGTGCGCGGGGTCC 77 133 1 CTGTCGGGTG 0.378574 -168 GGGTCCCCTTCAGCCGGGGCACTGACTGGA 77 157 1 CAGCCGGGGC 0.701392 -144 ********** Masking position 5 Map Score: 193.143 Number of sites scoring better than the average of aligned sites = 54324 Number in coding regions = 50871 Number in noncoding regions = 3453 Number of orfs with sites within 600 bp upstream = 1345 Fraction of orfs with sites within 600 bp upstream = 0.21603 Motif number 3 ACCTCTGACCCACCGCGACGAGCCAGTTAT 1 116 0 CACCGCGACG 0.579483 -185 CTGTTGCGGCCGTCGTGGCGGGTCACGCGT 1 199 1 CGTCGTGGCG 0.788465 -102 CATGGGCATTCGTCGTTGGCAGTCCCCACG 1 229 1 CGTCGTTGGC 0.699865 -72 TTGGCAGTCCCCACGCTAGCGGGGCGCTAG 1 244 1 CCACGCTAGC 0.584043 -57 GGATCGAACTCATCGTGAGGTGAAAGGGCG 1 279 1 CATCGTGAGG 0.247011 -22 GCGTCGATCTCGACGCGGCGCA 3 3 0 CGACGCGGCG 0.894046 -132 GCGTCGAGATCGACGCTGCCGTGTTGCCCA 3 17 1 CGACGCTGCC 0.927502 -118 GTGTCAATCTCGACGCCAGCCTTGACCGTG 3 66 1 CGACGCCAGC 0.921555 -69 CAGTGGTCACCAACGCAAGGAGGCCCC 3 118 1 CAACGCAAGG 0.349334 -17 GACAGCTCCTCGCAACCTGCTGGGTAG 4 8 1 CCTCGCAACC 0.378443 -83 GTTGGTGCCCCAACGTCGCCTACGGTCGGT 5 214 1 CAACGTCGCC 0.830126 -68 ACTGCCCTCCCGCCGTTGCGCCGGGTGCGT 7 83 1 CGCCGTTGCG 0.771734 -52 TACTTCCTGCCCACCTCACCCGCCACTTGA 8 107 1 CCACCTCACC 0.374398 -194 CGATAGCTCGCACCGTGGCGGCCCGGAACG 10 23 1 CACCGTGGCG 0.720035 -138 CCAGGACGTACGGCGTCGCGCGCCAAATCG 10 85 0 CGGCGTCGCG 0.479491 -76 CGACGCCGTACGTCCTGGCCTGCGGGTGTT 10 97 1 CGTCCTGGCC 0.665102 -64 GTCCGCGACGCGACGTGGCCCCTGGTGCAT 11 81 1 CGACGTGGCC 0.917562 -121 GCCGCTACACCGTCCTGACCGATGCACCAG 11 102 0 CGTCCTGACC 0.352022 -100 CCGGCGCCGGCGCCGATGCAG 13 2 1 CGGCGCCGGC 0.787892 -96 CGCCGCTCTCCCCCGCCAGCGGATGGGGGT 13 75 0 CCCCGCCAGC 0.845663 -23 ACAGCACATACGCCGCGGCCCCGCCATACC 14 19 0 CGCCGCGGCC 0.929566 -226 ATCCGCCGCACGACGGCGCCCTGTGCTGGT 15 20 0 CGACGGCGCC 0.487118 -31 ACATGCACGACCACCCTGGCCACCGGCGCT 16 68 0 CCACCCTGGC 0.62906 -233 ATGCCCAAGCCGCCCCAGCGCACCGACAAT 16 138 0 CGCCCCAGCG 0.708446 -163 AGCTGGAGGTCGACGATACGGTTGATGACA 16 205 1 CGACGATACG 0.0998017 -96 TGCGCACCACCATCCTGAGCGCCCGCCCCG 17 21 1 CATCCTGAGC 0.138563 -171 TTGTCCGTGTCAACGCGGCCGCAGCGCGAT 17 111 1 CAACGCGGCC 0.907101 -81 ACGTGTCGGGCACCCCGGCGCCACCCTCAC 19 41 0 CACCCCGGCG 0.701721 -46 ATTCGATCAACCACGCTAGCGCACGTTCGG 21 100 0 CCACGCTAGC 0.584043 -65 GATCGAATCGCGTCGCCGGGAGCACAGCGT 21 122 1 CGTCGCCGGG 0.934719 -43 CCGGAAAACCCGACGCGGGTGACGCGCGCC 25 14 0 CGACGCGGGT 0.305527 -241 ACGGTGTCAACGCCGTCAGCACAGTCAACG 25 126 0 CGCCGTCAGC 0.821737 -129 CTTGAAGCTCCGTCGCCAGGACTCGAACCT 25 227 0 CGTCGCCAGG 0.808273 -28 AACTCTCCCTCGTAGGGCACCTATACC 27 71 0 CCTCGTAGGG 0.336074 -17 GCAGCAGCTACGACGCAAGGAGAACCCA 28 79 1 CGACGCAAGG 0.634544 -18 TGTCCCAATGCGACGCGGTGGTTGGGC 29 8 0 CGACGCGGTG 0.260378 -199 GGCGGCACGCCATCGCCGGGCTCGCTACCC 29 38 0 CATCGCCGGG 0.828462 -169 CTACTCAGATCGACGCCGCGGTGAATTTTA 29 153 0 CGACGCCGCG 0.967824 -54 GCGGGCCTCCTCGGGTATCGCGGTG 29 192 0 CCTCCTCGGG 0.432605 -15 TGCGCCAGTGCGCCCTAGGCTGACGGCTCG 30 16 0 CGCCCTAGGC 0.549805 -78 CTATCGCTGTCAACGCAGCCCCATCTCGGC 30 56 0 CAACGCAGCC 0.752569 -38 TGCGTCAACGCAACCCTGCCAATTTTCGCC 31 148 0 CAACCCTGCC 0.566514 -153 CTGCGAGTTGCGACGCCACCTGCCGCCACC 31 230 1 CGACGCCACC 0.924629 -71 CTCAACCGGTCGACGACGGCCGACGACTGG 31 258 0 CGACGACGGC 0.668762 -43 CCCCGCCGGCCGACGATGCG 32 1 1 CCCCGCCGGC 0.952418 -134 CCCCGCCGGCCGACGATGCGGGCCGGAAGG 32 11 1 CGACGATGCG 0.288403 -124 AGGCCGAACGCCCCGTGGGGGGAACCCGCC 32 104 1 CCCCGTGGGG 0.751423 -31 AACCGGCAGGCAACGCCGGCATGGTCCCCT 33 17 0 CAACGCCGGC 0.929963 -211 AGCGTGATCGCGACCTAACCGGCAGGCAAC 33 33 0 CGACCTAACC 0.238576 -195 GGGATCTGTGCGACGTTGGCGGCAATCAGC 33 83 0 CGACGTTGGC 0.811949 -145 GTCCATCACCCCACGCCGCCATCAGGAGCT 33 201 1 CCACGCCGCC 0.949467 -27 CGGCCCGCTTCGTCGCCGGCGCTAGTCTCA 35 25 1 CGTCGCCGGC 0.958656 -24 CGGTCAACACCACCGCGGGCAGCCCAGCCA 38 33 0 CACCGCGGGC 0.912052 -75 ACCGGTGTGCCGACCCGGCGGTGCCGGCCC 38 59 1 CGACCCGGCG 0.874126 -49 CCGGCCCTACCGCCGTCGCGACTATGCTGA 38 82 1 CGCCGTCGCG 0.922107 -26 CGCCCGCATTCCACGTCAGCGTCGGTGCAT 39 72 1 CCACGTCAGC 0.634318 -32 TGCGATCCTGCCACGCCGCGGCAGGTTCAA 43 25 0 CCACGCCGCG 0.926667 -24 TCGGCTACGACCCCGCAACCGGAGTCTGAG 45 274 1 CCCCGCAACC 0.556566 -27 CGTGCGGCGACCACCCTGGCAGACTGTGGG 46 46 1 CCACCCTGGC 0.62906 -23 CGCCCGAGTTCGCCGTAGCCTGGTGTGAAC 47 214 1 CGCCGTAGCC 0.794239 -46 TTGCGCGACGCGCCCCGGCGCGACACGTAG 54 44 1 CGCCCCGGCG 0.671532 -66 AGATCCTCCTCACCCGGCTCGCCG 55 5 1 CCTCCTCACC 0.24426 -162 TCCAAGGGAGCACCCCCGGCCTGTATCGGG 56 102 1 CACCCCCGGC 0.83006 -199 AGCTGTTTCGCGTCGTCACGCGCAATCCAG 56 252 0 CGTCGTCACG 0.6114 -49 CGGCCGTTGACATCGCTGCGGCAATCAACA 58 17 1 CATCGCTGCG 0.589953 -117 CTTCAGTCACCCTCGCCGGCGCAAATACCC 58 77 0 CCTCGCCGGC 0.906683 -57 GGCAGACTGGCCACGCCAGGCTTGGTTGAA 59 73 0 CCACGCCAGG 0.768316 -55 CCACGTCCGTCGACCTGGCGATGCCGATGC 62 163 0 CGACCTGGCG 0.712474 -138 CCGAGGTGGCCGCCGCCCGCGCGAGACGGT 64 35 1 CGCCGCCCGC 0.802197 -202 CCGTTGTATTCACCGCTGGCAAACCCCTTA 64 70 1 CACCGCTGGC 0.808335 -167 GACTGTTCGACACCGCGGGCAACCTGGCCA 64 143 0 CACCGCGGGC 0.912052 -94 CAACCCCGCTCGTCGATGGGCCGACTAAGA 64 213 0 CGTCGATGGG 0.173282 -24 CGTCGTTTTGCGACCCCAGGTATAAGTGTC 65 24 1 CGACCCCAGG 0.723408 -168 GCTGGCGCAGCCTCGTCGCGGTGTGATTGT 68 84 1 CCTCGTCGCG 0.706707 -123 TGACGATGCGCGCCGCAGCGCTGGCCGAGA 68 122 0 CGCCGCAGCG 0.842109 -85 CTGCGGCGCGCATCGTCACCGGGCGGTTAC 68 134 1 CATCGTCACC 0.419257 -73 GGGGGCGGCGCCCCCCGAGGGTTGGGT 69 8 0 CCCCCCGAGG 0.42765 -144 CCTCGGGGGGCGCCGCCCCCCGAGTACCCC 69 18 1 CGCCGCCCCC 0.808975 -134 GAGTACCCCCCAACCCAACCCTCGGGGGGC 69 39 1 CAACCCAACC 0.215615 -113 CCTCGGGGGGCGCCGCCCCCCGAGTACCCC 69 58 1 CGCCGCCCCC 0.808975 -94 CGAGTACCCCCACCCTCGGGGGCGCCGCCC 69 78 1 CACCCTCGGG 0.537032 -74 CCCTCGGGGGCGCCGCCCCCGAGTGCCCCC 69 90 1 CGCCGCCCCC 0.808975 -62 TTCTTCCTTTCGACGTCCGCCATATGACGT 69 124 0 CGACGTCCGC 0.562122 -28 ACGCGGCCCGCATCGTCGCCGAA 70 4 0 CATCGTCGCC 0.72521 -212 CCTCGGACCACTACGCGGCCCGCATCGTCG 70 16 0 CTACGCGGCC 0.344774 -200 CTGCGCAAAACGCCGTAGGCCACGCGCTCA 72 49 0 CGCCGTAGGC 0.787072 -205 ACCGGCCGGGCGACGCTGCCACGGTACCGG 73 84 0 CGACGCTGCC 0.927502 -54 GCCCTGAATCCAACGCGGGCGACCCGCCGC 75 57 0 CAACGCGGGC 0.903388 -195 GCCCTGAATCCAACGCGGGCGACCCGCCGC 75 116 0 CAACGCGGGC 0.903388 -136 CGTTCACATTCGACGCTGCGAACACACTCG 76 44 1 CGACGCTGCG 0.895926 -46 AGCAGGCTACCGACCCTAGGCGACGAGTGT 76 67 0 CGACCCTAGG 0.427301 -23 CCGCTGAGTCCGTCCCGGGCGTTCCAGCCC 77 29 1 CGTCCCGGGC 0.843562 -272 AGTCGAACGACACCGTGGGCCCTTTCGCCG 77 213 0 CACCGTGGGC 0.785828 -88 ********** Masking position 4 Map Score: 117.194 Number of sites scoring better than the average of aligned sites = 62627 Number in coding regions = 59195 Number in noncoding regions = 3432 Number of orfs with sites within 600 bp upstream = 1249 Fraction of orfs with sites within 600 bp upstream = 0.20061 Motif number 4 GCGGGTCACGCGTCATGGGCATTCGTCGTTG 1 216 1 CGTCTGGGCA 0.795172 -85 TCGACGCTGCCGTGTTGCCCACTCGCACTTT 3 26 1 CGTGTGCCCA 0.797919 -109 GCTGGTATCCGGGCATGGGCGCCGGGCATGG 5 171 1 GGGCTGGGCG 0.818262 -111 GCGCGGGCGTGGCCATGCCCGGCGCCCATGC 5 183 0 GGCCTGCCCG 0.76106 -99 TTGGAGTGCGGGTGTCGCGCCGCTGTCTACC 5 241 0 GGTGCGCGCC 0.916322 -41 CCCCTCGGGACCCGCTGGGCGACCCCATGCG 7 25 0 CCCGTGGGCG 0.618144 -110 AGGAATGCGCCGTCCTGCGCTATTGTTGGAC 8 65 1 CGTCTGCGCT 0.583188 -236 TAATTTTGTCGGTTTCGGCCGGCGAACGATC 8 204 0 GGTTCGGCCG 0.813845 -97 TAGCTCGCACCGTGGCGGCCCGGAACGGGCC 10 26 1 CGTGCGGCCC 0.915538 -135 CAGCTGGTATGGACTGGCCCGTTCCGGGCCG 10 41 0 GGACGGCCCG 0.542232 -120 GGACGTACGGCGTCGCGCGCCAAATCGTGTA 10 81 0 CGTCCGCGCC 0.950367 -80 CGACGCCGTACGTCCTGGCCTGCGGGTGTTG 10 97 1 CGTCTGGCCT 0.421913 -64 CTGGCCTGCGGGTGTTGGGCGCGTGATGCAA 10 111 1 GGTGTGGGCG 0.941992 -50 TCTATCCTCCTGCGCAGCCCGGGGTC 10 145 0 CCTCTGCGCA 0.546629 -16 GTCCGCGACGCGACGTGGCCCCTGGTGCATC 11 81 1 CGACTGGCCC 0.851418 -121 GCCGCTACACCGTCCTGACCGATGCACCAGG 11 101 0 CGTCTGACCG 0.423522 -101 GAGGGATGCGCGTTGTGCCCGTCTCATAGCG 14 80 1 CGTTTGCCCG 0.894597 -165 GCCCGGTCCCGGTGCCGCCCGGGCGATGTCG 14 109 0 GGTGCGCCCG 0.950428 -136 AGGGAGCACCCGATGTGCCCGACTCATCGCG 14 153 0 CGATTGCCCG 0.864505 -92 CACAGCTTACGGTCGCGGGCCTAGTAGTCGC 14 208 0 GGTCCGGGCC 0.882738 -37 TTGCCCGGCTCCTGGCGGCCGCTGTCGCCGG 16 13 1 CCTGCGGCCG 0.867406 -288 CAGATCTGCCCGCCGCGCCCGGCGACAGCGG 16 31 0 CGCCCGCCCG 0.886322 -270 CAAGAATCTCCGCCTTGGGCATCACATGCAC 16 90 0 CGCCTGGGCA 0.469444 -211 TCTGATATTCCGAGATGCCCAAGCCGCCCCA 16 151 0 CGAGTGCCCA 0.748002 -150 CCTCGATCACGGTGTTGGCCAACAGTGATTC 16 255 0 GGTGTGGCCA 0.608191 -46 CGCTCAGGATGGTGGTGCGCAAAATGGAACC 17 11 0 GGTGTGCGCA 0.748479 -181 GGGCTGACATCGGGGCGGGCGCTCAGGATGG 17 30 0 CGGGCGGGCG 0.922805 -162 CGACGTTTTGCGCGGGGTCCGGGC 17 178 0 CGTTTGCGCG 0.92389 -14 ATTCGGCTTACGTGTCGGGCACCCCGGCGCC 19 49 0 CGTGCGGGCA 0.846633 -38 AGAACGTGTTCCACCTGCGCCGGGCAAGCGG 21 21 1 CCACTGCGCC 0.717952 -144 TCTTCGCGCACACGCGCGACCGGACGCG 22 22 0 GCACCGCGCG 0.820715 -18 ACCCGACGCGGGTGACGCGCGCCAGG 25 6 0 GGTGCGCGCG 0.966124 -249 AACCATGGCGCGACACGCGCGATAGGTCGCC 31 177 1 CGACCGCGCG 0.973997 -124 CGCCGGCCGACGATGCGGGCCGGAAGGCCTG 32 14 1 CGATCGGGCC 0.774005 -121 CCGGAAGGCCTGTGGTGGGCGTACCCCCGCA 32 33 1 TGTGTGGGCG 0.294806 -102 TGGCGCTCCTGGGCGGGTTCCCCCC 32 120 0 GCTCTGGGCG 0.776145 -15 ACACACTTTGCGACACGCCCGAACGGTGTCG 36 21 1 CGACCGCCCG 0.963224 -47 GTGCGGGATTGGAGGCGGGCGTT 37 3 0 GGAGCGGGCG 0.941152 -298 GTTTTGTTCCCGAGTTGGTCGCGGCTGTGCG 37 29 0 CGAGTGGTCG 0.259078 -272 GGGCGACACCCGATGTGCCCGGCTCTCAGCG 37 78 0 CGATTGCCCG 0.864505 -223 GGGCACATCGGGTGTCGCCCGGTGCAGTGAC 37 89 1 GGTGCGCCCG 0.952246 -212 TGTGGCCGTGCGATGTGCCCGACCCTCGGTG 37 132 1 CGATTGCCCG 0.864505 -169 CGGAGGTGCACCGGTTGCCCGCCTCACAACG 37 202 1 CCGGTGCCCG 0.668675 -99 CAGGAGTGTTCGTTGTGCCCGGCTGCGAGCG 37 254 0 CGTTTGCCCG 0.894597 -47 TGCCCGCGGTGGTGTTGACCGGTGTGCCGAC 38 42 1 GGTGTGACCG 0.296245 -66 CCGACCCGGCGGTGCCGGCCCTACCGCCGTC 38 68 1 GGTGCGGCCC 0.850227 -40 AGTTCTGCTGGCACCTGCGCCCGCATTCCAC 39 55 1 GCACTGCGCC 0.572903 -49 TTGGTGCACGGGGCTCGCCCGTTGGTGTAGA 42 20 0 GGGCCGCCCG 0.846637 -258 GCAGCCCTCAGGACTCGGCCGCGGTCGTTGT 42 89 1 GGACCGGCCG 0.911539 -189 CCGTATGCGCGGTGATCGCTG 44 1 1 CCGTTGCGCG 0.458934 -224 TGGTCATGCCGCTGTTGGCCGGTGCGTACGC 44 182 0 GCTGTGGCCG 0.724587 -43 TCCAAAAACGCCAGCTGGGCAGACAGGGCAT 45 133 0 CCAGTGGGCA 0.423248 -168 TGGCGTTTTTGGAGTCGCGCGCCGGCGACCG 45 151 1 GGAGCGCGCG 0.955427 -150 CCATCACCAAGCTCGAGCGCGAACAAATCCT 45 244 1 GCTCAGCGCG 0.347636 -57 CTGTGCCGGCGGATACGGGCGTGCGGCGACC 46 27 1 GGATCGGGCG 0.824576 -42 GACCGATTCGGCTGATGGCCAACGAGTTTTA 47 53 1 GCTGTGGCCA 0.264524 -207 AGGATGCGGCCGACATGGGCGTTGTCGGCGG 47 90 1 CGACTGGGCG 0.955231 -170 ACCCGAACCCGCAGGTGCCCGGCGGTCGGTA 47 147 0 GCAGTGCCCG 0.726105 -113 ATCCGGGCGGTTTCGGGCGCTTTCATGCC 49 9 1 GGTTCGGGCG 0.862121 -79 GACGCTACTCCGGGGTGCGCGAGCAGACGCA 50 63 0 CGGGTGCGCG 0.924242 -27 TTGTTCCTTTCGCGGTGCGCGCGCGCCAAAG 51 59 0 CGCGTGCGCG 0.901966 -23 GCCGCTTGCGCGACGCGCCCCGGCGCGACAC 54 39 1 CGACCGCCCC 0.90961 -71 ACAGAGCCTACGTGTCGCGCCGGGGCGCGTC 54 50 0 CGTGCGCGCC 0.954086 -60 TGGACTGTTACCAGGTGCGCGGCCCGCGGGT 55 102 1 CCAGTGCGCG 0.87798 -65 AGAGTGAGAACGTTCTGGGCCGGTTCGGCCC 56 12 1 CGTTTGGGCC 0.7766 -289 CGGCACACGCGGTTCTGCGCGTACCGCACCA 56 49 0 GGTTTGCGCG 0.864767 -252 TCGAAGCGGCCGACCTGCCCCAGATCCGGAG 56 158 0 CGACTGCCCC 0.877448 -143 TGTTTCGCGTCGTCACGCGCAATCCAGCGGG 56 248 0 CGTCCGCGCA 0.872093 -53 GCGCGGCGGCCGTTGACATCGC 58 2 1 CGCGCGGCCG 0.863193 -132 CCTCCGGCGCGCACGCCTCTT 60 1 1 CCTCGGCGCG 0.497763 -65 CGTGATAGTCCGTTTCGCCCGGCCCCCCAGA 60 34 0 CGTTCGCCCG 0.917497 -32 CGCGTTCAGCGCGTGATAGTCCG 60 53 0 CGTTAGCGCG 0.581377 -13 ATACAGGGTCCGAGGTGGCCGCCGCCCGCGC 64 26 1 CGAGTGGCCG 0.941817 -211 CGGCGACAACCGTCTCGCGCGGGCGGCGGCC 64 42 0 CGTCCGCGCG 0.980338 -195 AACGGGCCGCCGAGCTGGGCGGAA 65 178 1 CGAGTGGGCG 0.944656 -14 GTTCTCGCTTCGTGTCGGGCTGACCACACGC 68 55 1 CGTGCGGGCT 0.597478 -152 CGCCCGGTGACGATGCGCGCCGCAGCGCTGG 68 128 0 CGATCGCGCC 0.821132 -79 GTACCCCCACCCTCGGGGGCGCCGCCCCCGA 69 81 1 CCTCGGGGCG 0.425122 -71 TTCGGCGACGATGCGGGCCGCGTAGTGGT 70 9 1 CGATCGGGCC 0.774005 -207 TGGCATCGATGGAGATGGGCCAGCTCATTCA 70 99 1 GGAGTGGGCC 0.824165 -117 TGGCCTACGGCGTTTTGCGCAGAGCACGGCG 72 57 1 CGTTTGCGCA 0.623985 -197 AGTCCGAGCACGTGCTGCGCCGGAATCGGGT 72 198 1 CGTGTGCGCC 0.938786 -56 CGGACGCATTGGACCTGCCCGTTGTCCCATG 73 36 0 GGACTGCCCG 0.907796 -102 CCGCACCCGGCGACAAGCGCCGAGCTTGCGA 75 30 0 CGACAGCGCC 0.557407 -222 CCGGGTGCGGCGGGTCGCCCGCGTTGGATTC 75 51 1 CGGGCGCCCG 0.917571 -201 CCGCACCCGGCGACAAGCGCCGAGCTTGCGA 75 89 0 CGACAGCGCC 0.557407 -163 CCGGGTGCGGCGGGTCGCCCGCGTTGGATTC 75 110 1 CGGGCGCCCG 0.917571 -142 CCGCACCCGGCGACAAGCGCCGAGCTTGCGA 75 148 0 CGACAGCGCC 0.557407 -104 CGTAAAACCCGGACGCGGGCGACCCGCCGCA 75 174 0 GGACCGGGCG 0.936457 -78 CGCTACGCATCGTGTCGGCCCGTAAAACCCG 75 194 0 CGTGCGGCCC 0.915538 -58 CCGCTGAGTCCGTCCCGGGCGTTCCAGCCCA 77 29 1 CGTCCGGGCG 0.971311 -272 **** ****** Masking position 7 Map Score: 149.895 Number of sites scoring better than the average of aligned sites = 22913 Number in coding regions = 21415 Number in noncoding regions = 1498 Number of orfs with sites within 600 bp upstream = 856 Fraction of orfs with sites within 600 bp upstream = 0.137488 Motif number 5 TTTGTTCTTGGAAAGACAGCGCTGGGGATC 1 66 1 GAAAGACAGC 0.332563 -235 GTCACTGATGCTAGGCCGCAATCGGTGTC 2 10 1 GCTAGGCCGC 0.721894 -85 CCTGCTAGGCGGCAGGTTGCCCGAGCGGCC 5 70 1 GGCAGGTTGC 0.824785 -212 GCCTACGGTCGGTAGACAGCGGCGCGACAC 5 231 1 GGTAGACAGC 0.635217 -51 GTCGAGATCGCCAGCTAGCGCCGATATCC 8 10 1 GCCAGCTAGC 0.392036 -291 TGGCGGGTGAGGTGGGCAGGAAGTAGCCAG 8 102 0 GGTGGGCAGG 0.633856 -199 ATGAAGTGCTGGAAGGATGCATC 8 288 1 GGAAGGATGC 0.482817 -13 CCCAACACCCGCAGGCCAGGACGTACGGCG 10 100 0 GCAGGCCAGG 0.372771 -61 CAGGAGGCAAGCCAGTCTGCTAAACATGCA 11 37 1 GCCAGTCTGC 0.604967 -165 GACCGTATCCGCAAGGCCGCTACACCGTCC 11 117 0 GCAAGGCCGC 0.799583 -85 TCGTGCGGCGGATAGGCTGGCGCG 15 37 1 GATAGGCTGG 0.619405 -14 AGCGCCGGTGGCCAGGGTGGTCGTGCATGT 16 68 1 GCCAGGGTGG 0.715643 -233 ATGGGGCCTAGCTAGACTGCCTCCGTGATG 17 139 1 GCTAGACTGC 0.792784 -53 TGCACTGGGATGCAGGCTGGTGGTGCTCAC 23 65 1 TGCAGGCTGG 0.342748 -51 CGGATTTGTCGCCGGGTAGCCGGGATGCGA 24 13 0 GCCGGGTAGC 0.557538 -79 GCCCCATCTCGGCGGGCTGCCGGTGCGCCA 30 39 0 GGCGGGCTGC 0.919745 -55 ACAGCGATAGGGAAGCCTGGTTGCATAG 30 76 1 GGAAGCCTGG 0.690889 -18 GCGAAAATTGGCAGGGTTGCGTTGACGCAA 31 149 1 GCAGGGTTGC 0.516187 -152 AAAACCGCCGGTCAGGCAGCTGTCGCTGAG 37 55 1 GTCAGGCAGC 0.68516 -246 TGTTCGTTGTGCCCGGCTGCGAGCGACCGT 37 249 0 GCCCGGCTGC 0.845753 -52 GGTCTGGTTGGCTGGGCTGCCCGCGGTGGT 38 25 1 GCTGGGCTGC 0.841778 -83 GCCCGGGCTCGGTAGGCTGGACCG 39 5 0 GGTAGGCTGG 0.897355 -99 GGGCCCAACTGAAAGGCAGGAC 41 18 1 GAAAGGCAGG 0.605628 -12 GTAATGATAGGCAAGGCTGCCCTAATTTAG 42 131 1 GCAAGGCTGC 0.962141 -147 CATGACCATGGCAAGGCAGGACGGCCCTCG 44 205 1 GCAAGGCAGG 0.917733 -20 CTGCACACCAGCAAGACTGCCGCCATCCGG 45 102 1 GCAAGACTGC 0.854228 -199 ACGCCAGCTGGGCAGACAGGGCATGCCGGA 45 127 0 GGCAGACAGG 0.77525 -174 CCCACAGTCTGCCAGGGTGGTCGCCGCACG 46 46 0 GCCAGGGTGG 0.715643 -23 TTTCCGGCCTGCCAGACTGGACGGGCACAC 55 72 1 GCCAGACTGG 0.883703 -95 GATCCGGAGAGCCCGGCAGCCACTACCGAG 56 137 0 GCCCGGCAGC 0.770966 -164 TTGAGGCCTAGCAAGGCAGCTTGTTGTCCT 57 94 1 GCAAGGCAGC 0.940556 -37 CGCTGACCTGGGCAGACTGGCCACGCCAGG 59 83 0 GGCAGACTGG 0.848915 -45 ACATAGATAAGGAAGATTGCGGTGCC 61 19 1 GGAAGATTGC 0.366143 -16 GCTTAACTTGGCCAGGTTGCCCGCGGTGTC 64 135 1 GCCAGGTTGC 0.864208 -102 TGGATCCGGGGTTAGGCTGGCTTTTCTTAG 64 189 1 GTTAGGCTGG 0.465886 -48 CGGCCGGTTCGGCAGAATGGGACCGGAAAG 73 106 1 GGCAGAATGG 0.214164 -32 AATGGGACCGGAAAGGCAGGAGAGCTC 73 121 1 GAAAGGCAGG 0.605628 -17 GCCTAGGGTCGGTAGCCTGCTGAC 76 76 1 GGTAGCCTGC 0.675257 -14 CCCCAGGGCTGGAAGGCAGCAAGGGTCAAC 77 108 1 GGAAGGCAGC 0.921969 -193 ********** Masking position 5 Map Score: 30.0819 Number of sites scoring better than the average of aligned sites = 6694 Number in coding regions = 6173 Number in noncoding regions = 521 Number of orfs with sites within 600 bp upstream = 453 Fraction of orfs with sites within 600 bp upstream = 0.0727594 Motif number 6 CTTGGAAAGACAGCGCTGGGGATCGTTCGCTG 1 72 1 CGGCTGGGGA 0.661565 -229 TGCGGGGCCGCAGTGCAGTAGCGTCACCCTCG 2 41 1 CGGCAGTAGC 0.802756 -54 TCGCACTTTCGCGCGCTGGTGTCAATCTCGAC 3 48 1 GGGCTGGTGT 0.75564 -87 CCAGCCTTGACCGTGATGCAGCGCACAGTAGA 3 81 1 CGGATGCAGC 0.614032 -54 CCAGCAGGTTGCGAGGAGCTGTC 4 2 0 GGGGAGCTGT 0.418618 -89 TTTTGGCCACCGGCGCTGGTGGCCTACTGCCC 7 58 1 CGGCTGGTGG 0.835651 -77 TGACCCCGGGCTGCGCAGGAGGATAGA 10 144 1 CGGCAGGAGG 0.82034 -17 CAGGGTATGGCGGGGCCGCGGCGTATGTGCTG 14 16 1 CGGCCGCGGC 0.641056 -229 CGACGGCGCCCTGTGCTGGTATCTCTGGT 15 8 0 CGGCTGGTAT 0.511576 -43 GCGGGCAGATCTGAGGAGGAGCGCCGGTGGCC 16 49 1 CGGGAGGAGC 0.951395 -252 CCGGTGGCCAGGGTGGTCGTGCATGTGATGCC 16 72 1 GGGGTCGTGC 0.476291 -229 GCGATTGTCGGTGCGCTGGGGCGGCTTGGGCA 16 135 1 GGGCTGGGGC 0.922778 -166 CGCGGCCGCAGCGCGATGGGGCCTAGCTAGAC 17 124 1 GGGATGGGGC 0.471344 -68 CGCAGGTTGACCGCGCTGGCGCGGGGTCCATA 18 78 1 CGGCTGGCGC 0.83443 -223 TTCCGGCGTGCTGAGCTGCGGCTATGGTGTGT 19 11 1 CGGCTGCGGC 0.951461 -76 AAGCCGAATTCGGCGGTGCAGACGTC 19 71 1 CGGGTGCAGA 0.341882 -16 GCCGCTTGCCCGGCGCAGGTGGAACACGTTCT 21 21 0 CGGCAGGTGG 0.828943 -144 CGCACTGCACCAGTGGAGGAGCC 21 152 1 CGGGAGGAGC 0.951395 -13 GAACCAAAATCAGAGGTGCTGCCGATTACACC 25 186 0 CGGGTGCTGC 0.916511 -69 CCAAGACCGTCCGTGCAGCAGCTACGACGCAA 28 65 1 CGGCAGCAGC 0.953099 -32 CGGCAGCCCGCCGAGATGGGGCTGCGTTGACA 30 47 1 CGGATGGGGC 0.743854 -47 GACTGGGCAGTGGCTGGCAAACAG 31 3 1 CGGCAGTGGC 0.789098 -298 GCCGACATCTCCGCGGTGCAACCCAACAAGGA 31 119 0 CGGGTGCAAC 0.518217 -182 TGGGGGGAACCCGCCCAGGAGCGCCA 32 119 1 CGCCAGGAGC 0.532297 -16 GGGTGTCGCCCGGTGCAGTGACACATGTGAGA 37 98 1 CGGCAGTGAC 0.280102 -203 ATGAATCTCTGAGCGGAGGTGCACCGGTTGCC 37 189 1 GGGGAGGTGC 0.864464 -112 ATCGGCGCGGCAGAGCAGGAGTGTTCGTTGTG 37 268 0 CGGCAGGAGT 0.900447 -33 GCTGGGCTGCCCGCGGTGGTGTTGACCGGTGT 38 35 1 CGGGTGGTGT 0.830105 -73 CGTGGAATGCGGGCGCAGGTGCCAGCAGAACT 39 55 0 GGGCAGGTGC 0.929318 -49 GCCGAGTCCTGAGGGCTGCAGTGACCCCCGGT 42 76 0 GGGCTGCAGT 0.594717 -202 CACTAAGCTACAGTGCTGGTGCACGCCATGAA 44 81 1 CGGCTGGTGC 0.978229 -144 GCTGCGTAGCCCGGGCAGGAATTCGGCCGCCG 47 115 0 CGGCAGGAAT 0.484691 -145 CTACCGACCGCCGGGCACCTGCGGGTTCGGGT 47 146 1 CGGCACCTGC 0.745612 -114 CCAGACAGCCCGGAGCACCTGCGACACTACGC 53 74 0 CGGCACCTGC 0.745612 -30 CCGCTCGCCGGGGAGCGGGTGCTCGTCGATGA 63 23 0 GGGCGGGTGC 0.556915 -42 TTGTTCGATACAGCGCAGTTGTTCAGCACATC 65 113 0 CGGCAGTTGT 0.491929 -79 ACTGTGGAATGTGGGGTGGAGCAACGGGCCGC 65 156 1 GGGGTGGAGC 0.863118 -36 TCTTCTCGGCCAGCGCTGCGGCGCGCATCGTC 68 119 1 CGGCTGCGGC 0.951461 -88 GCGTAGTGGTCCGAGGAGGAGCCGGACGGCCC 70 30 1 CGGGAGGAGC 0.951395 -186 TCCTCTTCCTCTGCGGAGGTATGGTCCCAGTC 70 184 0 CGGGAGGTAT 0.326262 -32 CGTTTGTAGTCCGAGCACGTGCTGCGCCGGAA 72 191 1 CGGCACGTGC 0.853368 -63 AGTCTAATACCTGGGCTGGAACGCCCGGGACG 77 39 0 CGGCTGGAAC 0.814906 -262 CGTGGGTATACCGAGGTCCAGTCAGTGCCCCG 77 171 0 CGGGTCCAGT 0.239597 -130 * * ******** Masking position 3 Map Score: 51.4094 Number of sites scoring better than the average of aligned sites = 9735 Number in coding regions = 9111 Number in noncoding regions = 624 Number of orfs with sites within 600 bp upstream = 488 Fraction of orfs with sites within 600 bp upstream = 0.078381 Motif number 7 GGGATCGTTCGCTGGATACCACCCGCATAACTG 1 90 1 GCGGATCACC 0.907177 -211 ACTTTCGCGCGCTGGTGTCAATCTCGACGCCAG 3 52 1 GCGGTGAATC 0.688123 -83 CGAAAGCTACGCAGGTTCGAATCCTGCACCTGC 5 126 1 GCGGTTAATC 0.490169 -156 GGCGCCCATGCCCGGATACCAGCTTGACCGTGG 5 161 0 CCGGATCAGC 0.628106 -121 CGGCGGGAGGGCAGTAGGCCACCAGCGCCGGTG 7 65 0 GCGTAGCACC 0.756494 -70 CGGCGAACGGGCCCGTGGGCACCGCTCCTCTAA 8 238 1 GCCGTGCACC 0.687109 -63 GTCCTGGCCTGCGGGTGTTGGGCGCGTGATGCA 10 108 1 GCGGTGGGGC 0.703975 -53 GATGGTCGCGGCAGGAGGCAAGCCAGTCTGCTA 11 26 1 GCGGAGAAGC 0.841658 -176 CTAGCGGGTTGACAGCGCAGAAAGGA 12 4 1 GCGGTTCAGC 0.972932 -27 GAGGAGGAGCGCCGGTGGCCAGGGTGGTCGTGC 16 61 1 GCGGTGCAGG 0.754306 -240 GCGGGTCGGCGCAGGTTGACCGCGCTGGCGCGG 18 69 1 GCGGTTCCGC 0.861639 -232 ACACACCATAGCCGCAGCTCAGCACGCCGGAA 19 10 0 GCGCAGCAGC 0.659597 -77 AATCGCGTCGCCGGGAGCACAGCGTCGCACTGC 21 127 1 CCGGAGCAGC 0.825896 -38 GCTCCTCAAAGCGTGTGAGCACCACCAGCCTGC 23 76 0 GCTGTGCACC 0.789182 -40 TGCTCTCTCAGCTGTTTGCCAGCCACTGCCCAG 31 13 0 GCGTTTCAGC 0.6669 -288 TGCCCCAAACGCGGGTGCTCAGCATCATCGGAC 31 70 0 GCGGTGCAGC 0.98984 -231 TCCCCCGTATGCGGGGGTACGCCCACCACAGGC 32 40 0 GCGGGGCGCC 0.745455 -95 GCGCTCCTGGGCGGGTTCCCCCCACGGGGCGTT 32 110 0 GCGGTTCCCC 0.784428 -25 GCCGGAGTACGCTGGTTTCAACCCGCAGGAGAT 42 246 1 GCGGTTAACC 0.735099 -32 AAGCTACAGTGCTGGTGCACGCCATGAAAGACC 44 85 1 GCGGTGCGCC 0.972094 -140 CGGCAGTCTTGCTGGTGTGCAGCCGGTCAGCGA 45 91 0 GCGGTGCAGC 0.897886 -210 GACAGGGCATGCCGGATGGCGGCAGTCTTGCTG 45 110 0 GCGGATCGGC 0.919928 -191 ACCCGAACCCGCAGGTGCCCGGCGGTCGGTAGC 47 145 0 GCGGTGCGGC 0.977748 -115 CCGGTGGTGAGCTGGTTCACACCAGGCTACGGC 47 225 0 GCGGTTCACC 0.96251 -35 GCGCTTTCATGCCGGTGTGAAGCGGTTCCTAGA 49 27 1 GCGGTGAAGC 0.912646 -61 CAGGGTGAGGGCTGGCGGTCACCGATCAATTCT 49 57 0 GCGGCGCACC 0.83186 -31 CACCCGGCTCGCCGGTTCACATCGCTGGTAAAG 55 21 1 GCGGTTCATC 0.899078 -146 TGGACTGTTACCAGGTGCGCGGCCCGCGGGTAG 55 102 1 CCGGTGCGGC 0.852946 -65 GGATTATTGAGCTGTTTCGCGTCGTCACGCGCA 56 258 0 GCGTTTCGTC 0.36286 -43 GCTCGCAGTATCTCATCGACGAGCACC 63 5 1 GCGTATCATC 0.318098 -60 TCGCCGGGGAGCGGGTGCTCGTCGATGAGATAC 63 18 0 GCGGTGCGTC 0.924026 -47 ATAAGTGTCCGCCGGACCGCACCGGAAGCAGAA 65 45 1 GCGGACCACC 0.628811 -147 TCGATACAGCGCAGTTGTTCAGCACATCTTCAC 65 108 0 GCGTTGCAGC 0.916335 -84 GGCTGCGCCAGCGTGTGGTCAGCCCGACACGAA 68 63 0 GCTGTGCAGC 0.865193 -144 TGAACGTTCGGCGTGATTTCGGCGCGCGGGTTC 76 17 0 GCTGATCGGC 0.444879 -73 CTCCCCCAGGGCTGGAAGGCAGCAAGGGTCAAC 77 105 1 GCGGAACAGC 0.592228 -196 ** **** **** Masking position 2 Map Score: 54.6786 Number of sites scoring better than the average of aligned sites = 5387 Number in coding regions = 5071 Number in noncoding regions = 316 Number of orfs with sites within 600 bp upstream = 250 Fraction of orfs with sites within 600 bp upstream = 0.0401542 Motif number 8 CACGACGGCCGCAACAGCAGTCGAACAACAACC 1 183 0 GCACACGTCG 0.71397 -118 GTGCAGTAGCGTCACCCTCGTCGTTGACCGAAC 2 53 1 GTCCCTGTCG 0.804691 -42 TGTGTGCTCTGTCTACCCGGTCGTTGTACCCTG 5 41 1 GTCACCGTCG 0.968409 -241 TCCTGCACCTGCCACCACGGTCAAGCTGGTATC 5 147 1 GCCCCCGTCA 0.923023 -135 TCGTTCGCCGGCCGAAACCGACAAAATTATCGC 8 206 1 GCCAACGACA 0.465987 -95 ATGTCCAAGCTATCGGATGGTCGCG 11 3 1 GTCAACATCG 0.515639 -199 GTGCTGTGGTGTCACATCCGTCACTTGCGCCTC 14 42 1 GTCCACGTCA 0.717352 -203 GGGCCTAGTAGTCGCAGTTGTCACACGAGTCCC 14 190 0 GTCCATGTCA 0.16003 -55 CCGGCTCCTGGCGGCCGCTGTCGCCGGGCGCGG 16 17 1 GCGCCCGTCG 0.941492 -284 AACCCCGGTGGCATCAGCCGTCGGGCTGACATC 17 50 0 GCACACGTCG 0.71397 -142 GCTTGTCCGTGTCAACGCGGCCGCAGCGCGATG 17 109 1 GTCACCGCCG 0.911159 -83 TGGACCCCGCGCCAGCGCGGTCAACCTGCGCCG 18 75 0 GCCGCCGTCA 0.553426 -226 GGTTGGTGAGGCCGCAACTGTCTGAGGCCTTTA 23 16 1 GCCCACGTCT 0.496956 -100 CCTGGCGCGCGTCACCCGCGTCGGGTTTTCCGG 25 11 1 GTCCCGGTCG 0.773536 -244 CGTCAGCACAGTCAACGCTGTCGCCGTCTACCC 25 110 0 GTCACCGTCG 0.968409 -145 TTTAGACGGTGTCAACGCCGTCAGCACAGTCAA 25 128 0 GTCACCGTCA 0.781278 -127 TCACATCGATGTGCAATCCGTCGTGGTGTAATC 25 162 1 GTGAACGTCG 0.655444 -93 TGGGTTTGTTGACTACCCCGTCGCACTCGGGGC 27 13 0 GACACCGTCG 0.675287 -75 TTCCGGACCTGCTCAACCGGTCGACGACGGCCG 31 266 0 GCTAACGTCG 0.355573 -35 CAAGCTGATTGCCGCCAACGTCGCACAGATCCC 33 80 1 GCCCCAGTCG 0.701307 -148 ATCCTTGGTCGCCGCACCGGCCGGTAGTGGACT 33 124 1 GCCCACGCCG 0.9318 -104 ACATGCTGAGGCGCACACGGTCGCTCGCAGCCG 37 233 1 GCGACCGTCG 0.899876 -68 CGGCACACCGGTCAACACCACCGCGGGCAGCCC 38 38 0 GTCACCACCG 0.472995 -70 CACTTTATGCACCGACGCTGACGTGGAATGCGG 39 75 0 ACCACCGACG 0.268922 -29 GTCCTTGTGTCTACACCAACGGGCGAGCCCC 42 9 1 GTCACCAACG 0.468306 -269 GTGACCCCCGGTCGACTCGATCGGCGAGCCCCG 42 55 0 GTCACCATCG 0.728454 -223 CCGGCACAGCGTCTAAATTGACGGT 46 3 0 GTCAATGACG 0.230669 -66 TTGGCCATCAGCCGAATCGGTCGATCGGGGCCG 47 42 0 GCCAACGTCG 0.957998 -218 CCAGGCTACGGCGAACTCGGGCGGCGGGAAAGC 47 204 0 GCGACCGGCG 0.708248 -56 GTTCGTCACCTCCGACCTAGAGGATAT 52 14 0 GTCCCCGACC 0.543182 -17 GGCGCGACACGTAGGCTCTGTCGGGGGTAGAAA 54 60 1 GTAGCCGTCG 0.257456 -50 GGGCAGGTCGGCCGCTTCGATCGATGGCCGTAG 56 169 1 GCCCTCATCG 0.22302 -132 TGGCGCTTCAGTCACCCTCGCCGGCGCAAATAC 58 79 0 GTCCCTGCCG 0.579557 -55 GCGGGCGGCGGCCACCTCGGACCCTGTATCGGG 64 22 0 GCCCCCGACC 0.690343 -215 GACAAGTCCCCACCGTCGTTTTGCGACC 65 6 1 GTCCCCGTCG 0.982106 -186 GCCCCCGAGTGCCCCCACAGACGTCATATGGCG 69 104 1 GCCCCCGACG 0.971253 -48 CTCGACTAGGGTGTCCACGGACGCATTGGACCT 73 51 0 GTGCCCGACG 0.738075 -87 GTCCCATTCTGCCGAACCGGCCGGGCGACGCTG 73 96 0 GCCAACGCCG 0.884139 -42 CGGGCGACCCGCCGCACCCGGCGACAAGCGCCG 75 39 0 GCCCACGGCG 0.916876 -213 CGGGCGACCCGCCGCACCCGGCGACAAGCGCCG 75 98 0 GCCCACGGCG 0.916876 -154 CGGGCGACCCGCCGCACCCGGCGACAAGCGCCG 75 157 0 GCCCACGGCG 0.916876 -95 CGGCGAAAGGGCCCACGGTGTCGTTCGACTCTC 77 213 1 GCCACGGTCG 0.781512 -88 *** ** * **** Masking position 12 Map Score: 46.7612 Number of sites scoring better than the average of aligned sites = 16249 Number in coding regions = 15566 Number in noncoding regions = 683 Number of orfs with sites within 600 bp upstream = 500 Fraction of orfs with sites within 600 bp upstream = 0.0803084 Motif number 9 GGAAAGACAGCGCTGGGGATCGTTCGCTGGAT 1 75 1 CGCTGGATCG 0.7856 -226 GCTAGCGGGGCGCTAGCCACGGGATCGAACTC 1 258 1 CGCTGCACGG 0.763325 -43 ACTGCGGCCCCGCAAGACACCGATTGCGGCCT 2 23 0 CGCAGCACCG 0.880673 -72 CGCCTACGGTCGGTAGACAGCGGCGCGACACC 5 230 1 CGGTGCAGCG 0.548732 -52 CTGGGGTATCCGCATGGGGTCGCCCAGCGGGT 7 15 1 CGCAGGGTCG 0.82432 -120 TGGCCACCGGCGCTGGTGGCCTACTGCCCTCC 7 61 1 CGCTGGGCCT 0.621526 -74 TATCGGCGCTAGCTGGCGATCTCGAC 8 5 0 AGCTGGATCT 0.0350182 -296 CCTCACCCGCCACTTGACACCGTGGTCTTAGT 8 120 1 CACTGCACCG 0.673459 -181 ATAATTTTGTCGGTTTCGGCCGGCGAACGATC 8 204 0 CGGTTGGCCG 0.582948 -97 CTTAGAGGAGCGGTGCCCACGGGCCCGTTCGC 8 240 0 CGGTCCACGG 0.364763 -61 TGGACTGGCCCGTTCCGGGCCGCCACGGTGCG 10 31 0 CGTTCGGCCG 0.578888 -130 CACGATTTGGCGCGCGACGCCGTACGTCCTGG 10 83 1 CGCGGCGCCG 0.943056 -78 CTCATCGCCCCGCTCTGCATCGGCGCCGGCGC 13 14 0 CGCTTCATCG 0.337237 -84 CTGACAGAGGCGCAAGTGACGGATGTGACACC 14 49 0 CGCAGGACGG 0.373802 -196 CGACATCGCCCGGGCGGCACCGGGACCGGGCG 14 109 1 CGGGGCACCG 0.588271 -136 GAGATACCAGCACAGGGCGCCGTCGTGCGGCG 15 15 1 CACAGCGCCG 0.45844 -36 TGCACGACCACCCTGGCCACCGGCGCTCCTCC 16 63 0 CCCTGCACCG 0.39403 -238 AAGAGGTTTGAGCTGGAGGTCGACGATACGGT 16 195 1 AGCTGGGTCG 0.771776 -106 CGGGCGTTCCCGCGTCCGGTCGCGCGTGTGCG 22 12 1 CGCGCGGTCG 0.728451 -28 CTGCCCTCGCCGTTTGGGATCGAATTGGATTA 24 66 0 CGTTGGATCG 0.29699 -26 TACCCCGTCGCACTCGGGGCGG 27 1 0 CACTGGGCGG 0.258092 -87 TTTGCTACTCAGATCGACGCCGCGGTGAATTT 29 155 0 AGATGCGCCG 0.596396 -52 CCTGCTCAACCGGTCGACGACGGCCGACGACT 31 260 0 CGGTGCGACG 0.410061 -41 CGCCGGCCGACGATGCGGGCCGGAAGGCCTGT 32 14 1 CGATCGGCCG 0.680663 -121 TGGCGCTCCTGGGCGGGTTCCCCCC 32 120 0 CGCTCGGGCG 0.749775 -15 GAATGGAGTCCACTACCGGCCGGTGCGGCGAC 33 131 0 CACTCGGCCG 0.680212 -97 CGTGGGTAGCTCCTGATGGCGGCGTGGGG 33 209 0 AGCTCGATGG 0.0686638 -19 CGCACACGGTCGCTCGCAGCCGGGCACAACGA 37 244 1 CGCTGAGCCG 0.69346 -57 CCTCAGGACTCGGCCGCGGTCGTTGTGGCTCG 42 94 1 CGGCGGGTCG 0.398051 -184 CCCGCTCGAAACCGTTGAACCTGC 43 3 1 CGCTGAACCG 0.588716 -46 ATGGTCATGCCGCTGTTGGCCGGTGCGTACGC 44 182 0 CGCTTGGCCG 0.785102 -43 TGGAGTCGCGCGCCGGCGACCGTGAGGCACAA 45 160 1 CGCCGGACCG 0.490914 -141 CCGAATCGGTCGATCGGGGCCGCTGGATCCAT 47 32 0 CGATGGGCCG 0.740882 -228 TTTAGCCTCGAGGATGCGGCCGACATGGGCGT 47 80 1 AGGAGGGCCG 0.479675 -180 CGGGCTACGCAGCTACCGACCGCCGGGCACCT 47 134 1 AGCTCGACCG 0.724053 -126 GGTGTGAACCAGCTCACCACCGGCGGGAGGCC 47 235 1 AGCTACACCG 0.094034 -25 TTCTAGGAACCGCTTCACACCGGCATGAAAGC 49 29 0 CGCTCCACCG 0.949055 -59 CTGCAGATGGCACTGGCCATCG 53 1 0 CACTGCATCG 0.40079 -103 CCGATAGGTCCGCTTCTCGTCGTGGAATTCTG 53 41 0 CGCTCCGTCG 0.930545 -63 AGCGGCTCGTCGGTTCCGGTCGGCCGGTTGCC 54 13 0 CGGTCGGTCG 0.830287 -97 CCCGGCTCGCCGGTTCACATCGCTGGTAAAGC 55 23 1 CGGTCCATCG 0.735083 -144 GAGGACCGCCCGATACAGGCCGGGGGTGCTCC 56 108 0 CGATCGGCCG 0.837012 -193 AGGTTCACGACGCGACACGCCGCGAAGCCGTC 59 37 0 CGCGCCGCCG 0.898007 -91 GCCAGGTCGACGGACGTGGTCGCGCTATGACG 62 174 1 CGGAGGGTCG 0.678603 -127 GACGAGCACCCGCTCCCCGGCGAGCGGCTCAG 63 28 1 CGCTCCGGCG 0.628274 -37 ACAGGGTCCGAGGTGGCCGCCGCCCGCGCGAG 64 28 1 AGGTGCGCCG 0.801432 -209 CCGCGCGAGACGGTTGTCGCCGTTGTATTCAC 64 51 1 CGGTGCGCCG 0.970805 -186 TCGAACAGTCCGATCGGGATCGTGTGTGGATC 64 163 1 CGATGGATCG 0.449058 -74 AAGTGTCCGCCGGACCGCACCGGAAGCAGAAG 65 47 1 CGGACCACCG 0.589477 -145 TGTGGGGTGGAGCAACGGGCCGCCGAGCTGGG 65 165 1 AGCACGGCCG 0.519203 -27 ATTGAGTTCTCGCTTCGTGTCGGGCTGACCAC 68 50 1 CGCTCTGTCG 0.250325 -157 CGCCCGGTGACGATGCGCGCCGCAGCGCTGGC 68 127 0 CGATCCGCCG 0.68724 -80 ACCCAACCCTCGGGGGGCGCCGCCCCCCGAGT 69 11 1 CGGGGCGCCG 0.830744 -141 ACCCAACCCTCGGGGGGCGCCGCCCCCCGAGT 69 51 1 CGGGGCGCCG 0.830744 -101 TTCGGCGACGATGCGGGCCGCGTAGTGGTC 70 9 1 CGATCGGCCG 0.680663 -207 CACCAATGAGCGGCTGGCATCGATGGAGATGG 70 85 1 CGGCGCATCG 0.328094 -131 ACAAGCGCCGAGCTTGCGATCGCCCGTAAACT 75 17 0 AGCTGGATCG 0.618324 -235 GCAAGCTCGGCGCTTGTCGCCGGGTGCGGCGG 75 32 1 CGCTGCGCCG 0.987252 -220 ACAAGCGCCGAGCTTGCGATCGCCCTGAATCC 75 76 0 AGCTGGATCG 0.618324 -176 GCAAGCTCGGCGCTTGTCGCCGGGTGCGGCGG 75 91 1 CGCTGCGCCG 0.987252 -161 ACAAGCGCCGAGCTTGCGATCGCCCTGAATCC 75 135 0 AGCTGGATCG 0.618324 -117 GCAAGCTCGGCGCTTGTCGCCGGGTGCGGCGG 75 150 1 CGCTGCGCCG 0.987252 -102 ATCACCTGGTCGCTACGCATCGTGTCGGCCCG 75 203 0 CGCTCCATCG 0.86089 -49 ATTAGACTCACGGTGGACCCCGCGCGGCGTCT 77 63 1 CGGTGCCCCG 0.47241 -238 CTAAGAGAGTCGAACGACACCGTGGGCCCTTT 77 218 0 CGAAGCACCG 0.494679 -83 **** * ***** Masking position 12 Map Score: 91.286 Number of sites scoring better than the average of aligned sites = 18961 Number in coding regions = 17620 Number in noncoding regions = 1341 Number of orfs with sites within 600 bp upstream = 833 Fraction of orfs with sites within 600 bp upstream = 0.133794 Motif number 10 CCGAGCGGCCAATGGGAGCGGACTGTAAATC 5 90 1 AATGGGACGG 0.75278 -192 TGAGCCGCAAACTGGGCTCAGACTAAGACCA 8 142 0 ACTGGGCCAG 0.652847 -159 CTCTTACACGATTTGGCGCGCGACGCCGTAC 10 77 1 ATTTGGCCGC 0.497634 -84 GCCTGCGGGTGTTGGGCGCGTGATGCAAGAT 10 114 1 GTTGGGCCGT 0.536322 -47 CAAGCTATCGGATGGTCGCGGCAGGAGGCAA 11 16 1 GATGGTCCGG 0.454922 -186 AGTCGGAGAAGTTGGGAGCGGTAG 11 188 1 GTTGGGACGG 0.866146 -14 CCCGGGCGGCACCGGGACCGGGCGTTGCCGA 14 117 1 ACCGGGACGG 0.818391 -128 AACTGCGACTACTAGGCCCGCGACCGTAAGC 14 204 1 ACTAGGCCGC 0.695189 -41 AGATACCAGCACAGGGCGCCGTCGTGCGGCG 15 16 1 ACAGGGCCCG 0.368989 -35 GGCCGCTGTCGCCGGGCGCGGCGGGCAGATC 16 29 1 GCCGGGCCGG 0.966616 -272 TTCTTGACCCGCAGGGCCAGGCGATTGTCGG 16 115 1 GCAGGGCAGG 0.796773 -186 ACTGAACTTGACATGGCGCGGCCGCAACAAC 18 186 0 ACATGGCCGG 0.521486 -115 TCAGTTCGGAACTGGGCTCGCATACAACCCG 18 212 1 ACTGGGCCGC 0.981165 -89 CGCTGCTGAGACTGGGATCGGGTTGTATGCG 18 230 0 ACTGGGACGG 0.943451 -71 TTCCACCTGCGCCGGGCAAGCGGCCGTCCAG 21 29 1 GCCGGGCAGC 0.762868 -136 GAGGAGCCAGACTAGGCTCGCCGT 23 102 1 ACTAGGCCGC 0.698481 -14 GTTAGTCAACATTGGGCCCGGCTTCCCCGCC 26 13 0 ATTGGGCCGG 0.960904 -46 ACCGCGTCGCATTGGGACAGGGTAGCGAGCC 29 19 1 ATTGGGAAGG 0.464698 -188 GCACGCCATCGCCGGGCTCGCTACCCTGTCC 29 33 0 GCCGGGCCGC 0.948623 -174 AGGCGGCCTGACAGGGCCAGCTCACAATTCA 32 74 1 ACAGGGCAGC 0.658044 -61 GGCGTGGGGTGATGGACACGGGTCATGAAGC 33 187 0 GATGGACCGG 0.321252 -41 TTGTTCCCGAGTTGGTCGCGGCTGTGCGGGA 37 26 0 GTTGGTCCGG 0.576929 -275 GGCGACACCCGATGTGCCCGGCTCTCAGCGA 37 77 0 GATGTGCCGG 0.440455 -224 AGGAGTGTTCGTTGTGCCCGGCTGCGAGCGA 37 253 0 GTTGTGCCGG 0.562583 -48 CCGCGCCGATGTTGGGAACGC 37 290 1 GTTGGGACGC 0.805365 -11 CTGCCTTTCAGTTGGGCCCGGCTTCG 41 6 0 GTTGGGCCGG 0.969644 -24 GCCTTGGTGCACGGGGCTCGCCCGTTGGTGT 42 23 0 ACGGGGCCGC 0.914383 -255 GCACCAAGGCACGGGGCTCGCCGATCGAGTC 42 44 1 ACGGGGCCGC 0.914383 -234 CTCCGGGCTGTCTGGGAGAGGAT 53 91 1 TCTGGGAAGG 0.158082 -13 ACCTGGGCAGACTGGCCACGCCAGGCTTGGT 59 77 0 ACTGGCCCGC 0.648342 -51 ACTGGGCGAGCTTAACTGAGC 63 54 0 ACTGGGCAGC 0.9018 -11 ATCGAGCTTAACTTGGCCAGGTTGCCCGCGG 64 130 1 ACTTGGCAGG 0.475307 -107 CATCGATGGAGATGGGCCAGCTCATTCACGC 70 102 1 GATGGGCAGC 0.684258 -114 ATCTTTGGGTGTGGGGCCCGGCCTCCGTCCG 70 134 0 GTGGGGCCGG 0.867849 -82 TCTTTTTTGGGCAGGGAACGGACTGGGACCA 70 164 1 GCAGGGACGG 0.819898 -52 AATTTTCAAAACTGGGCACGCCAAACCGGCA 72 123 0 ACTGGGCCGC 0.981072 -131 GGTTCGGCAGAATGGGACCGGAAAGGCAGGA 73 111 1 AATGGGACGG 0.75278 -27 ******* *** Masking position 5 Map Score: 38.7689 Number of sites scoring better than the average of aligned sites = 5778 Number in coding regions = 5349 Number in noncoding regions = 429 Number of orfs with sites within 600 bp upstream = 370 Fraction of orfs with sites within 600 bp upstream = 0.0594282 Motif number 11 GAAAGACAGCGCTGGGGATCGTTCGCTGGA 1 76 1 GCTGGGGATC 0.856542 -225 TGACCGAACCGCTCGGGAGCCAATTCTT 2 77 1 GCTCGGGAGC 0.726469 -18 ATCGGCGCTAGCTGGCGATCTCGAC 8 6 0 GCTGGCGATC 0.868426 -295 GGATCGGGTTGTATGCGAGCCCAGTTCCGA 18 217 0 GTATGCGAGC 0.732284 -84 TGCCCTCGCCGTTTGGGATCGAATTGGATT 24 67 0 GTTTGGGATC 0.907255 -25 TCTCTCAGCTGTTTGCCAGCCACTGCCCAG 31 13 0 GTTTGCCAGC 0.881263 -288 AGCGTGTAATGTTTGCGAGCCGGGTGCATA 42 169 1 GTTTGCGAGC 0.962536 -109 GCTAAAACTCGTTGGCCATCAGCCGAATCG 47 56 0 GTTGGCCATC 0.710911 -204 ATCCGACCGGATTTGGGAGCTTTTGCGTCT 50 22 0 ATTTGGGAGC 0.645807 -68 ATCCGGTCGGATTTGGGAGCTTTTGCGTCT 50 40 1 ATTTGGGAGC 0.645807 -50 CTTTTAAGGGGTTTGCCAGCGGTGAATACA 64 74 0 GTTTGCCAGC 0.881263 -163 CAAGCGCCGAGCTTGCGATCGCCCGTAAAC 75 18 0 GCTTGCGATC 0.951508 -234 CAAGCGCCGAGCTTGCGATCGCCCTGAATC 75 77 0 GCTTGCGATC 0.951508 -175 CAAGCGCCGAGCTTGCGATCGCCCTGAATC 75 136 0 GCTTGCGATC 0.951508 -116 ********** Masking position 8 Map Score: 12.5511 Number of sites scoring better than the average of aligned sites = 667 Number in coding regions = 567 Number in noncoding regions = 100 Number of orfs with sites within 600 bp upstream = 86 Fraction of orfs with sites within 600 bp upstream = 0.013813 Motif number 12 CCACGCTAGCGGGGCGCTAGCCACGGGATC 1 254 1 GGGGCGCTAG 0.210967 -47 TGGTCCAGCCGGTGACCTACCCTACCCAGC 4 29 0 GGTGACCTAC 0.16204 -62 GGCCATGCCCGGCGCCCATGCCCGGATACC 5 174 0 GGCGCCCATG 0.289098 -108 GTGTCGCGCCGCTGTCTACCGACCGTAGGC 5 231 0 GCTGTCTACC 0.147854 -51 GGTAGACAGCGGCGCGACACCCGCACTCCA 5 241 1 GGCGCGACAC 0.448118 -41 ACGTTGGTCGGCCACCCACCATGTCATTGC 6 14 0 GCCACCCACC 0.236832 -96 AGGCCGATTTGCCGTCCTCAGTTCACGTTG 6 38 0 GCCGTCCTCA 0.0959556 -72 CTGGTGGCCTACTGCCCTCCCGCCGTTGCG 7 73 1 ACTGCCCTCC 0.0959735 -62 TGAGGAATGCGCCGTCCTGCGCTATTGTTG 8 63 1 GCCGTCCTGC 0.212138 -238 CTGGCTACTTCCTGCCCACCTCACCCGCCA 8 102 1 CCTGCCCACC 0.17651 -199 CAAAATTATCGCGGCGAACGGGCCCGTGGG 8 227 1 GCGGCGAACG 0.234781 -74 TTAGAGGAGCGGTGCCCACGGGCCCGTTCG 8 241 0 GGTGCCCACG 0.878152 -60 TCCTTTCTGCGCTGTCAACCCGCTAG 12 7 0 GCTGTCAACC 0.460902 -24 CACTTGTGGGGGCGTGCCCCCACCTCATCG 13 39 0 GGCGTGCCCC 0.812606 -59 GAGCGCCGCTCTCCCCCGCCAGCG 13 84 0 GCCGCTCTCC 0.266027 -14 GCCCGGTCCCGGTGCCGCCCGGGCGATGTC 14 110 0 GGTGCCGCCC 0.632065 -135 ACCAGCACAGGGCGCCGTCGTGCGGCGGAT 15 20 1 GGCGCCGTCG 0.484755 -31 AGATCTGCCCGCCGCGCCCGGCGACAGCGG 16 31 0 GCCGCGCCCG 0.888083 -270 AGATGCCCAAGCCGCCCCAGCGCACCGACA 16 140 0 GCCGCCCCAG 0.698425 -161 CCGCGCCAGCGCGGTCAACCTGCGCCGACC 18 72 0 GCGGTCAACC 0.304285 -229 CGGGCACCCCGGCGCCACCCTCACACACCA 19 35 0 GGCGCCACCC 0.89647 -52 GTGGCGCCGGGGTGCCCGACACGTAAGCCG 19 47 1 GGTGCCCGAC 0.465327 -40 GCAGTGCGACGCTGTGCTCCCGGCGACGCG 21 130 0 GCTGTGCTCC 0.652007 -35 AAATCCGGGCGGTGCGCTACGTACCATGGG 24 36 1 GGTGCGCTAC 0.555847 -56 CGCGCTGCCCTCGCCGTTTGGGA 24 79 0 GCTGCCCTCG 0.803627 -13 CAACGCTGTCGCCGTCTACCCACCGGCCCC 25 101 0 GCCGTCTACC 0.269467 -154 GACTTTAGACGGTGTCAACGCCGTCAGCAC 25 134 0 GGTGTCAACG 0.328698 -121 GACTAACCTCGGCGCCCTAGAATGGCCGCA 26 37 1 GGCGCCCTAG 0.662119 -22 AGCCGGTATAGGTGCCCTACGAGGGAGAGT 27 67 1 GGTGCCCTAC 0.688413 -21 GCCGGTTGATGGGGTCACCCGTGATCCGGA 29 73 1 GGGGTCACCC 0.414497 -134 CAGCCCGAGCCGTCAGCCTAGGGCGCAC 30 9 1 GCCGTCAGCC 0.344309 -85 GCGGGCTGCCGGTGCGCCAGTGCGCCCTAG 30 28 0 GGTGCGCCAG 0.458692 -66 CTTCCCTATCGCTGTCAACGCAGCCCCATC 30 61 0 GCTGTCAACG 0.262907 -33 GTCCGATGATGCTGAGCACCCGCGTTTGGG 31 70 1 GCTGAGCACC 0.396289 -231 CGACATCTCCGCGGTGCAACCCAACAAGGA 31 119 0 GCGGTGCAAC 0.177949 -182 ACGCAACCATGGCGCGACACGCGCGATAGG 31 173 1 GGCGCGACAC 0.448118 -128 GCCTGTGGTGGGCGTACCCCCGCATACGGG 32 40 1 GGCGTACCCC 0.39303 -95 CTCCTGGGCGGGTTCCCCCCACGGGGCGTT 32 110 0 GGTTCCCCCC 0.183934 -25 CAAGCTGATTGCCGCCAACGTCGCACAGAT 33 80 1 GCCGCCAACG 0.692203 -148 GGGCACATCGGGTGTCGCCCGGTGCAGTGA 37 89 1 GGTGTCGCCC 0.367187 -212 CCCGACCCTCGGTGCGCACCAATTTGAGCC 37 149 1 GGTGCGCACC 0.496221 -152 GACATGCTGAGGCGCACACGGTCGCTCGCA 37 232 1 GGCGCACACG 0.412592 -69 GGTTGGCTGGGCTGCCCGCGGTGGTGTTGA 38 30 1 GCTGCCCGCG 0.6188 -78 TACACCAACGGGCGAGCCCCGTGCACCAAG 42 22 1 GGCGAGCCCC 0.66767 -256 CGACTCGATCGGCGAGCCCCGTGCCTTGGT 42 46 0 GGCGAGCCCC 0.66767 -232 GCCCGGTACGGCCGCCCGCCGGTTTGGATA 42 200 1 GCCGCCCGCC 0.881674 -78 GGTCTTTCATGGCGTGCACCAGCACTGTAG 44 88 0 GGCGTGCACC 0.744543 -137 GGGCATTTCGGCCGTCCTCCTTGTCATTGA 44 119 0 GCCGTCCTCC 0.875486 -106 CGAGGGCCGTCCTGCCTTGCCATGG 44 210 0 GCCGTCCTGC 0.212138 -15 TCGCTGACCGGCTGCACACCAGCAAGACTG 45 91 1 GCTGCACACC 0.338457 -210 CAGCAAGACTGCCGCCATCCGGCATGCCCT 45 110 1 GCCGCCATCC 0.796719 -191 ACGGGCGTGCGGCGACCACCCTGGCAGACT 46 41 1 GGCGACCACC 0.771548 -28 GCTACCGACCGCCGGGCACCTGCGGGTTCG 47 145 1 GCCGGGCACC 0.391333 -115 GCCGTAGCCTGGTGTGAACCAGCTCACCAC 47 225 1 GGTGTGAACC 0.396165 -35 GGTGCCCAACACTAGATGCC 48 33 0 GGTGCCCAAC 0.750741 -10 TTCCTTTCGCGGTGCGCGCGCGCCAAAGCC 51 57 0 GGTGCGCGCG 0.45858 -25 GACGCGCCCCGGCGCGACACGTAGGCTCTG 54 50 1 GGCGCGACAC 0.448118 -60 CTACCCGCGGGCCGCGCACCTGGTAACAGT 55 105 0 GCCGCGCACC 0.853768 -62 ATACAGGCCGGGGGTGCTCCCTTGGATATG 56 98 0 GGGGTGCTCC 0.562806 -203 CCTGTATCGGGCGGTCCTCGGTAGTGGCTG 56 121 1 GCGGTCCTCG 0.413798 -180 CACCGGCGCGCCAGAGTGAAAGTG 59 5 1 GGCGCGCCAG 0.643128 -123 CCTCCGGCGCGCACGCCTCTTACTC 60 6 1 GGCGCGCACG 0.863185 -60 CCACCCCCTAGGTGCCACCCCCTAGGTGTA 62 61 1 GGTGCCACCC 0.801853 -240 TCGCGCGGGCGGCGGCCACCTCGGACCCTG 64 29 0 GGCGGCCACC 0.555951 -208 TGAATACAACGGCGACAACCGTCTCGCGCG 64 52 0 GGCGACAACC 0.393057 -185 TTCTGCTTCCGGTGCGGTCCGGCGGACACT 65 48 0 GGTGCGGTCC 0.375474 -144 GCCGTCCTCCAACTACGGTG 66 19 0 GCCGTCCTCC 0.875486 -10 CCGCGACGAGGCTGCGCCAGCGTGTGGTCA 68 75 0 GCTGCGCCAG 0.381829 -132 CCAGCGCTGCGGCGCGCATCGTCACCGGGC 68 128 1 GGCGCGCATC 0.351543 -79 CGGTGGGGCCCTCCATACGCATGT 68 193 0 GGGGCCCTCC 0.867651 -14 CTCGGGGGGCGGCGCCCCCCGAGGGTTGGG 69 12 0 GGCGCCCCCC 0.913755 -140 CTCGGGGGGCGGCGCCCCCCGAGGGTTGGG 69 52 0 GGCGCCCCCC 0.913755 -100 ACTCGGGGGCGGCGCCCCCGAGGGTGGGGG 69 84 0 GGCGCCCCCG 0.949754 -68 GCTCGACTAGGGTGTCCACGGACGCATTGG 73 55 0 GGTGTCCACG 0.722169 -83 GACGCCGCGCGGGGTCCACCGTGAGTCTAA 77 64 0 GGGGTCCACC 0.728982 -237 GTTGACCCTTGCTGCCTTCCAGCCCTGGGG 77 108 0 GCTGCCTTCC 0.272275 -193 ********** Masking position 4 Map Score: 70.3163 Number of sites scoring better than the average of aligned sites = 23962 Number in coding regions = 22369 Number in noncoding regions = 1593 Number of orfs with sites within 600 bp upstream = 912 Fraction of orfs with sites within 600 bp upstream = 0.146482 Motif number 13 AGACAGAGCACACACGGCTATCTCGCGAAGGAGGGA 5 19 0 CCGCACTCGC 0.973496 -263 GGCGAACGGGCCCGTGGGCACCGCTCCTCTAAGGGC 8 239 1 CCGGACGCTC 0.491425 -62 CTGTAACCCCTTCGATAGCTCGCACCGTGGCGG 10 8 1 CCGAACTCGC 0.812548 -153 CATCTTGCATCACGCGCCCAACACCCGCAGGCCAGG 10 110 0 CCCCACACCC 0.651006 -51 TTGTGCCCGTCTCATAGCGACATCGCCCGGGCGGCA 14 92 1 CCGCAATCGC 0.946226 -153 ATGTGCCCGACTCATCGCGACAACTCGGCAACGCCC 14 136 0 CCGCAAACTC 0.913126 -109 GATGACACCACGCTTGCCGAGATCGCAGAATCACTG 16 228 1 CCCCAATCGC 0.776756 -73 GATAGGTATGCCCGCGGCAAGAACCCCGGTGGCATC 17 68 0 CCGCAAACCC 0.818824 -124 GAATTGTGCGGTCAAGGCGATAACTCTTGCAAGACA 18 112 1 GCGCAAACTC 0.729869 -189 TCGCCGTCTACCCACCGGCCCCACGCAAACCGATAC 25 87 0 CCGGCCACGC 0.579782 -168 CATCAACCGGCGCGCTGGCGGCACGCCATCGCCGGG 29 48 0 CCGGGCACGC 0.717446 -159 GGCGCACTGGCGCACCGGCAGCCCGCCGAGATGGGG 30 32 1 CCGGACCCGC 0.809744 -62 GAGGCGGCCTGACAGGGCCAGCTCACAATTCAGGCC 32 73 1 GCGCACTCAC 0.611094 -62 TCGGGCACATCGCACGGCCACAACTCTCACATGTGT 37 118 0 CCGCAAACTC 0.913126 -183 AACCTGCCGCGGCGTGGCAGGATCGCAGAGC 43 28 1 GCGCGATCGC 0.420103 -21 CGGCCGCATCCTCGAGGCTAAAACTCGTTGGCCATC 47 66 0 CCGCAAACTC 0.913126 -194 TCGGCTTTCCCGCCGCCCGAGTTCGCCGTAGCCTGG 47 201 1 CCCCATTCGC 0.306565 -59 CCACCGCGAAAAGACGCAAAAGCTCCC 50 2 1 CCGAAGACGC 0.358605 -88 CAGACCTTTTCTCCTGGGAAGCTCTCGGGGTTCGGC 56 209 1 CCGGACTCTC 0.822486 -92 CCCTCTACACTACGCAAGCACGCGGTGATAACG 68 8 1 CCGCACACGC 0.981312 -199 GTCAGCCCGACACGAAGCGAGAACTCAATTTCTGGC 68 43 0 CCGCAAACTC 0.913126 -164 CCCGAGTACCCCCCAACCCAACCCTCGGGGGGCGCC 69 36 1 CCCCACCCTC 0.538029 -116 AGGATGACACGTCCGAGCGACATCACCTGGTCGCTA 75 220 0 GCGCAATCAC 0.429478 -32 CGGGAACCCGCGCGCCGAAATCACGCCGAACGTTCA 76 14 1 CCGAACACGC 0.861055 -76 GTTCACATTCGACGCTGCGAACACACTCGTCGCCTA 76 45 1 GCGCACACAC 0.691968 -45 * * ** * ***** Masking position 3 Map Score: 17.1179 Number of sites scoring better than the average of aligned sites = 2349 Number in coding regions = 2144 Number in noncoding regions = 205 Number of orfs with sites within 600 bp upstream = 181 Fraction of orfs with sites within 600 bp upstream = 0.0290716 Motif number 14 GAGTTGCTCCCACCTGGTCTCGCAGGCTA 4 72 0 CTCACCTGGC 0.11234 -19 CACGGTCAAGCTGGTATCCGGGCATGGGCGCCG 5 162 1 CTGATCCGGC 0.744952 -120 CGCGGGCGTGGCCATGCCCGGCGCCCATGCCCG 5 180 0 GCCGCCCGGG 0.938421 -102 AGACAGCGGCGCGACACCCGCACTCCAACAATT 5 244 1 GCGACCCGCC 0.690381 -38 TTCAATCGTGCACGCACCCGGCGCAACGGCGGG 7 91 0 CACACCCGGG 0.332094 -44 CCAGCTAGCGCCGATATCCGGGGATGGTTATTG 8 21 1 CCGATCCGGG 0.946049 -280 TTTGAGGAATGCGCCGTCCTGCGCTATTGTTGG 8 61 1 GCGGTCCTGG 0.744315 -240 AGTTGCGTGCGTGAGATCCGGACAGATCGTTCG 8 180 1 GTGATCCGGC 0.770004 -121 CCTTCGATAGCTCGCACCGTGGCGGCCCGGAAC 10 19 1 CTCACCGTGC 0.18876 -142 GTATGGACTGGCCCGTTCCGGGCCGCCACGGTG 10 33 0 GCCTTCCGGC 0.779499 -128 CTATCCTCCTGCGCAGCCCGGGGTCATCTTGCA 10 137 0 GCGGCCCGGG 0.943894 -24 GTCCGATATTGCCTCATCGAGACCGTATCCGCA 11 134 0 GCCATCGAGC 0.178652 -68 GTGGGAGGTACCCCCATCCGCTGGCGGGGGAGA 13 66 1 CCCATCCGCG 0.459308 -32 CCGCGGCCCCGCCATACCCTGGGCAG 14 4 0 GCCACCCTGG 0.863842 -241 CATCGCCCGGGCGGCACCGGGACCGGGCGTTGC 14 112 1 GCGACCGGGC 0.908791 -133 CCAGCACAGGGCGCCGTCGTGCGGCGGATAGGC 15 21 1 GCGGTCGTGG 0.42354 -30 CATTGCCCGGCTCCTGGCGGCCGCTGTC 16 6 1 CCCCTCCTGC 0.333508 -295 AGATCTGCCCGCCGCGCCCGGCGACAGCGGCCG 16 28 0 GCCGCCCGGG 0.93839 -273 ACCGACAATCGCCTGGCCCTGCGGGTCAAGAAT 16 114 0 GCCGCCCTGG 0.789022 -187 CAGCTCAAACCTCTTGCCCTGACGCACATCTGA 16 177 0 CTCGCCCTGC 0.352266 -124 TGCGGGTCCCGGCTGATCGTCCAG 16 287 0 GCGTCCCGGT 0.289935 -14 ATTTTGCGCACCACCATCCTGAGCGCCCGCCCC 17 17 1 CCAATCCTGG 0.0757374 -175 AGCCGTCGGGCTGACATCGGGGCGGGCGCTCAG 17 35 0 CTGATCGGGC 0.424333 -157 GACGTTTTGCGCGGGGTCCGGGCGAGCGGAGAC 17 168 0 GCGGTCCGGC 0.93704 -24 CGGCGCTTGGCCGCCATCTGGATGGATCCACCG 18 259 1 CCGATCTGGT 0.0462584 -42 GGGCACCCCGGCGCCACCCTCACACACCATAGC 19 31 0 GCGACCCTCC 0.353807 -56 CGCTCCGGCAGCGGCACCCGAACGTGCGCTAGC 21 83 1 GCGACCCGAC 0.299367 -82 TGATCGAATCGCGTCGCCGGGAGCACAGCGTCG 21 121 1 GCGGCCGGGG 0.817583 -44 CCGGGCGTTCCCGCGTCCGGTCGCGCGTGTGC 22 10 1 CCCGTCCGGC 0.920636 -30 GCTACCCGGCGACAAATCCGGGCGGTGCGCTAC 24 23 1 GACATCCGGC 0.332623 -69 GTTTTCCGGCGCCTTATCCGGCCCTTTATCCGG 25 35 1 GCCATCCGGC 0.957623 -220 ATCGCCGGGCTCGCTACCCTGTCCCAATGCGAC 29 24 0 TCGACCCTGC 0.446015 -183 ATGGGGTCACCCGTGATCCGGATGGTTCCGCTC 29 81 1 CCGATCCGGT 0.589998 -126 GGTTGCGTCAACGCAACCCTGCCAATTTTCGCC 31 148 0 ACGACCCTGC 0.165709 -153 TGGGCGTACCCCCGCATACGGGGGAGAGGCGGC 32 48 1 CCCATACGGG 0.13529 -87 GATAATCCGAGCGTGATCGCGACCTAACCGGCA 33 39 0 GCGATCGCGC 0.214906 -189 TCACCCCACGCCGCCATCAGGAGCTACCCACG 33 206 1 CCGATCAGGG 0.18957 -22 GCAGCTGTCGCTGAGAGCCGGGCACATCGGGTG 37 70 1 CTGAGCCGGC 0.283941 -231 CACACGGTCGCTCGCAGCCGGGCACAACGAACA 37 246 1 CTCAGCCGGC 0.253848 -55 AACGACCGCGGCCGAGTCCTGAGGGCTGCAGTG 42 85 0 GCCGTCCTGG 0.713954 -193 CCGGCGGGCGGCCGTACCGGGCCTATGCACCCG 42 189 0 GCCACCGGGC 0.895254 -89 GCTCTGCGATCCTGCCACGCCGCGGC 43 33 0 CTGATCCTGC 0.417663 -16 TGCCCAAGGACCGACTGCCGGACTTGACGCCCA 44 144 1 CCGTGCCGGC 0.340236 -81 AGCAAGACTGCCGCCATCCGGCATGCCCTGTCT 45 111 1 CCGATCCGGA 0.304289 -190 ATCTTGCGTACCGAAATCTGGCCCCTGCTTGCC 45 201 1 CCGATCTGGC 0.436505 -100 CGGCTACGACCCCGCAACCGGAGTCTGAGCACC 45 275 1 CCCAACCGGG 0.565126 -26 TCGCCGCACGCCCGTATCCGCCGGCACAGCGTC 46 23 0 CCCATCCGCG 0.459313 -46 GGCCCTATCCTGACAAGCTCGATG 47 2 1 GCCATCCTGC 0.847298 -258 GTCGGTAGCTGCGTAGCCCGGGCAGGAATTCGG 47 121 0 GCGGCCCGGC 0.958706 -139 CCGGGCACCTGCGGGTTCGGGTGCTAGATGCCG 47 156 1 GCGTTCGGGG 0.455889 -104 ATCCGGGCGGTTTCGGGCGCTTTCATGCC 49 7 1 GCGTTCGGGG 0.455889 -81 TGACCGCCAGCCCTCACCCTGCCGCCGAT 49 69 1 CCCACCCTGC 0.878863 -19 CGCAAAAGCTCCCAAATCCGGTCGGATTTGGGA 50 25 1 CCCATCCGGC 0.951724 -65 GCGTCTGCTCGCGCACCCCGGAGTAGCGTCAAA 50 64 1 GCGCCCCGGG 0.757064 -26 CCGGCAACCGGCCGACCGGAACC 54 1 1 CCGAACCGGC 0.665073 -109 CAAGCGGCTCGTCGGTTCCGGTCGGCCGGTTGC 54 14 0 GTCTTCCGGC 0.321736 -96 AGATCCTCCTCACCCGGCTCGCCGGTTCA 55 7 1 TCCACCCGGT 0.149728 -160 GCCGACCTGCCCCAGATCCGGAGAGCCCGGCAG 56 148 0 CCCATCCGGG 0.937607 -153 CAGCGGGTTCGCCGAACCCCGAGAGCTTCCCAG 56 222 0 GCCACCCCGG 0.51548 -79 GCGTCGTCACGCGCAATCCAGCGGGTTCGCCGA 56 240 0 GCGATCCAGG 0.433948 -61 CTCGTCATATCCGATACCCTGGGTACTGGGTAT 58 50 1 CCGACCCTGG 0.865829 -84 GCGACCACGTCCGTCGACCTGGCGATGCCGATG 62 164 0 CCGGACCTGC 0.222188 -137 GGAATCTGGAGCCTTGTCGGGCCGCTCAACATA 62 206 1 GCCGTCGGGC 0.770861 -95 TTGAGTCGTTGCCAGATCCTGTCAGATTCCCGA 62 254 1 GCCATCCTGC 0.847289 -47 CGACGAGCACCCGCTCCCCGGCGAGCGGCTCAG 63 27 1 CCGCCCCGGG 0.731095 -38 AACAGTCCGATCGGGATCGTGTGTGGATCCGGG 64 166 1 TCGATCGTGG 0.0937419 -71 TCTGCTTCCGGTGCGGTCCGGCGGACACTTATA 65 44 0 GTGGTCCGGG 0.600998 -148 GCGGCGCGCATCGTCACCGGGCGGTTACGAGCC 68 136 1 TCGACCGGGG 0.387001 -71 ATCTTTGGGTGTGGGGCCCGGCCTCCGTCCGGG 70 132 0 GTGGCCCGGC 0.747462 -84 ATGGTCCCAGTCCGTTCCCTGCCCAAAAAAGAT 70 163 0 TCCTCCCTGC 0.102392 -53 ACGTGCTGCGCCGGAATCGGGTGCACCGACAAG 72 207 1 CCGATCGGGG 0.815681 -47 CCTAGTCGAGCCGGTACCGTGGCAGCGTCGCCC 73 74 1 CCGACCGTGC 0.680971 -64 TACCGTGGCAGCGTCGCCCGGCCGGTTCGGCAG 73 88 1 GCGGCCCGGC 0.958829 -50 CGGGCGACCCGCCGCACCCGGCGACAAGCGCCG 75 39 0 GCCACCCGGG 0.962742 -213 CGGGCGACCCGCCGCACCCGGCGACAAGCGCCG 75 98 0 GCCACCCGGG 0.962742 -154 CGGGCGACCCGCCGCACCCGGCGACAAGCGCCG 75 157 0 GCCACCCGGG 0.962742 -95 GCCCGTAAAACCCGGACGCGGGCGACCCGCCGC 75 175 0 CCCACGCGGC 0.312941 -77 AGCCCGCTGAGTCCGTCCCGGGCGTTCCAGCCC 77 26 1 GTCTCCCGGC 0.408165 -275 CGTGGGTATACCGAGGTCCAGTCAGTGCCCCGG 77 170 0 CCGGTCCAGC 0.340759 -131 *** ****** * Masking position 8 Map Score: 92.4783 Number of sites scoring better than the average of aligned sites = 17080 Number in coding regions = 15789 Number in noncoding regions = 1291 Number of orfs with sites within 600 bp upstream = 796 Fraction of orfs with sites within 600 bp upstream = 0.127851 Motif number 15 CGACTGCTGTTGCGGCCGTCGTGGCGGGTCACGC 1 193 1 TGCGGCTCGG 0.747476 -108 GCTACTGCACTGCGGCCCCGCAAGACACCGATTG 2 29 0 TGCGGCCGCG 0.940962 -66 GGCGACCCCATGCGGATACCCCAGCTGG 7 5 0 TGCGGACCCG 0.923816 -130 GCGGTCAACCTGCGCCGACCCGCGATCTGTGAGA 18 58 0 TGCGCCCCCG 0.918013 -243 CTCAGACAGTTGCGGCCTCACCAACCGCAGA 23 8 0 TGCGGCCACA 0.737034 -108 GATGCGGCCATTCTAGGGCGCCGAGG 26 43 0 TGCGGCTTCG 0.945037 -16 TGGATTTCGGCTTTCCGGACCTGCTCAAC 31 282 0 TTCGGCTCCA 0.503733 -19 TACCGGCCGGTGCGGCGACCAAGGATCTGTTTGC 33 116 0 TGCGGCCCAG 0.980212 -112 GCTTAGTGATTTCGGCTACCCATATTTTATTCTT 44 55 0 TTCGGCCCCA 0.819124 -170 TGTTGGCCGGTGCGTACGCTCCTGTGGGCGTCAA 44 167 0 TGCGTACTCG 0.389497 -58 GATACGGGCGTGCGGCGACCACCCTGGCAGACTG 46 38 1 TGCGGCCCAC 0.774221 -31 GCCTCGAGGATGCGGCCGACATGGGCGTTGTCGG 47 84 1 TGCGGCACAG 0.698218 -176 TACCGGAATATGCGGCATCTAGCACCCGAACCCG 47 167 0 TGCGGCCTAA 0.83849 -93 GCATACATCTTGCGGCATCTAGTGTTGGGCACC 48 20 1 TGCGGCCTAG 0.952197 -23 TGGGAGCTTTTGCGTCTTTTCGCGGTGG 50 5 0 TGCGTCTTCG 0.692273 -85 TGGGAGCTTTTGCGTCTGCTCGCGCACCCCGGAG 50 53 1 TGCGTCCTCG 0.909085 -37 GTTCGTCACCTCCGACCTAGAGGAT 52 16 0 TTCGTCCTCA 0.19242 -15 GACGTCCGTGCGGCCTCTCTGGATTATTGAGC 56 279 0 TGCGGCCTCG 0.987084 -22 TTGACATCGCTGCGGCAATCAACAACACTCGTCA 58 23 1 TGCGGCTCAA 0.743884 -111 CGGCCAGCGCTGCGGCGCGCATCGTCACCGGGCG 68 125 1 TGCGGCGCAG 0.774219 -82 GTACTCGGGGGGCGGCGCCCCCCGAGGGTTGGGT 69 11 0 GGCGGCCCCG 0.977943 -141 GTACTCGGGGGGCGGCGCCCCCCGAGGGTTGGGT 69 51 0 GGCGGCCCCG 0.977943 -101 GGCACTCGGGGGCGGCGCCCCCGAGGGTGGGGGT 69 83 0 GGCGGCCCCA 0.920357 -69 GGGTTGGCGGTGCGGTGTCCCGTGCCGGTTTGGC 72 101 1 TGCGGTCCCG 0.873042 -153 AGCAGGATTATGCGGCGCTTCAGGGC 77 285 1 TGCGGCTTCG 0.945037 -16 ****** *** * Masking position 4 Map Score: 30.9138 Number of sites scoring better than the average of aligned sites = 4198 Number in coding regions = 3927 Number in noncoding regions = 271 Number of orfs with sites within 600 bp upstream = 227 Fraction of orfs with sites within 600 bp upstream = 0.03646