AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00240_mtub_reg_100.orf -o00240_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 dnaN 300 dnaN #2 gca 281 gca #3 gmhA 73 gmhA #4 Rv0232 134 hypothetical protein Rv0232 #5 pcp 48 pcp #6 Rv0320 71 hypothetical protein Rv0320 #7 dcd 31 dcd #8 umpA 80 umpA #9 Rv0383c 140 hypothetical protein Rv0383c #10 Rv0569 134 hypothetical protein Rv0569 #11 nrdZ 25 nrdZ #12 rpoB 300 rpoB #13 rpoC 44 rpoC #14 Rv1543 227 hypothetical protein Rv1543 #15 Rv1545 21 hypothetical protein Rv1545 #16 Rv1546 48 hypothetical protein Rv1546 #17 dnaE1 67 dnaE1 #18 polA 103 polA #19 pyrG 139 pyrG #20 Rv1707 300 hypothetical protein Rv1707 #21 nrdF 224 nrdF #22 pyrD 300 pyrD #23 ndkA 42 ndkA #24 valS 87 valS #25 Rv2449c 89 hypothetical protein Rv2449c #26 Rv2450c 81 hypothetical protein Rv2450c #27 dut 25 dut #28 thyA 164 thyA #29 gpsI 300 gpsI #30 nrdG 130 nrdG #31 nrdE 65 nrdE #32 nrdI 34 nrdI #33 nrdH 300 nrdH #34 tmk 96 tmk #35 sahH 104 sahH #36 deoD 64 deoD #37 upp 104 upp #38 cdd 236 cdd #39 dnaE2 191 dnaE2 #40 truA 67 truA #41 rplQ 31 rplQ #42 rpoA 151 rpoA #43 Rv3644c 85 hypothetical protein Rv3644c #44 dnaQ 251 dnaQ #45 dnaZX 89 dnaZX #46 Rv3722c 300 hypothetical protein Rv3722c #47 Rv3908 300 hypothetical protein Rv3908 #48 sigM 34 sigM #49 trxB2 93 trxB2 Motif number 1 CGAGCCAGTTATGCGGGTGGTATCCAGCGA 1 98 0 ATGCGGGTGG 0.467172 -203 TGACCCGCCACGACGGCCGCAACAGCAGTC 1 194 0 CGACGGCCGC 0.946227 -107 TCCCCACGCTAGCGGGGCGCTAGCCACGGG 1 251 1 AGCGGGGCGC 0.962041 -50 TTTGACGAGCCGCGGCCTCGCTGCAAACAT 2 109 1 CGCGGCCTCG 0.536225 -173 CAAACATTGAAGCCCGCACGTCTGGGTTTG 2 132 1 AGCCCGCACG 0.543347 -150 CGCGCGCCAGATCGGGGAGCGCCCTCGTTG 2 170 0 ATCGGGGAGC 0.621517 -112 CACCTCGTTGCGCGCGCCAGATCGGGGAGC 2 180 0 CGCGCGCCAG 0.596339 -102 GCGCGCAACGAGGTGCGCACTATCCATTCG 2 195 1 AGGTGCGCAC 0.477009 -87 CTTGATGCTCAGGCCGGTGCGGTTTGTCGA 2 240 1 AGGCCGGTGC 0.813703 -42 TGCGCCGCGTCGAGATCGACGC 4 3 1 CGCCGCGTCG 0.538462 -132 CTCGCACTTTCGCGCGCTGGTGTCAATCTC 4 47 1 CGCGCGCTGG 0.944164 -88 GTGTCAATCTCGACGCCAGCCTTGACCGTG 4 66 1 CGACGCCAGC 0.714782 -69 ACGAGCGTATCTGTCGCCGCACGCTGGC 7 9 0 CTGTCGCCGC 0.72656 -23 GCGACAGATACGCTCGTCGG 7 22 1 CGCTCGTCGG 0.778258 -10 GCGGTGGCCTCGGGCGTGACATCCGCGGTC 8 11 0 CGGGCGTGAC 0.753725 -70 CTTCTCCTCACGCCGCCACGCGGGAGGCCG 8 59 0 CGCCGCCACG 0.781758 -22 AGGAATCGCACTGCGCGGACCTCACGCGTG 9 38 0 CTGCGCGGAC 0.632756 -103 TCCTCGTCTGCTCGGCGTGGAAGGTGACTG 9 64 1 CTCGGCGTGG 0.660082 -77 TTAGCCTATCCGCTGGCGGCCCGGAACCGA 9 115 0 CGCTGGCGGC 0.981325 -26 GGGGTCGCCCAGCGGGTCCCGAGGGGACTT 10 30 1 AGCGGGTCCC 0.604654 -105 AGGCCACCAGCGCCGGTGGCCAAAAGTCCC 10 53 0 CGCCGGTGGC 0.96264 -82 CCCGGCGCAACGGCGGGAGGGCAGTAGGCC 10 78 0 CGGCGGGAGG 0.968177 -57 CCCGCCGTTGCGCCGGGTGCGTGCACGATT 10 91 1 CGCCGGGTGC 0.984812 -44 CCCCGGATATCGGCGCTAGCTGGCGATCTC 12 14 0 CGGCGCTAGC 0.718984 -287 TTGGACGTTGCGCTGGCTACTTCCTGCCCA 12 90 1 CGCTGGCTAC 0.893086 -211 GTGGCGGGTGAGGTGGGCAGGAAGTAGCCA 12 103 0 AGGTGGGCAG 0.658422 -198 ACAAAATTATCGCGGCGAACGGGCCCGTGG 12 226 1 CGCGGCGAAC 0.871021 -75 CTTAGAGGAGCGGTGCCCACGGGCCCGTTC 12 242 0 CGGTGCCCAC 0.807363 -59 AGTCCACTACCGGCCGGTGCGGCGACCAAG 14 127 0 CGGCCGGTGC 0.958292 -101 CAGGCCGGAACGCCCCTCACA 15 2 0 CGCCCCTCAC 0.587502 -20 GGCGACGAAGCGGGCCGTGCGCTATGGCCC 16 12 0 CGGGCCGTGC 0.874464 -37 ATGAGACTAGCGCCGGCGACGAAGCGGGCC 16 26 0 CGCCGGCGAC 0.976982 -23 CGAACGGTGTCGGTCCTCGGTCATAGACTG 17 40 1 CGGTCCTCGG 0.446661 -28 CAGCCTACCGAGCCCGGGCGTAAAACTGAA 18 16 1 AGCCCGGGCG 0.721072 -88 ACGTGGAATGCGGGCGCAGGTGCCAGCAGA 18 58 0 CGGGCGCAGG 0.92543 -46 GGCGCCTCACCGCGGGGAACACGCCCTAAC 19 17 0 CGCGGGGAAC 0.954537 -123 TCTGGCCTTGCTGGGCCTGCCGACCCACGG 19 67 0 CTGGGCCTGC 0.642448 -73 CTGTTCTTGACGCTGCCAAGATTTCTCTGG 19 92 0 CGCTGCCAAG 0.638206 -48 ACCTCCGTGAAGACGGGCAGGGCTGTTCTT 19 114 0 AGACGGGCAG 0.48034 -26 CTGCTATCCGCGATGGCACCAAACGTCGTT 20 16 0 CGATGGCACC 0.523323 -285 TACATGGGCTCGCTCGCAGCGTTCAAGCTT 20 52 0 CGCTCGCAGC 0.918316 -249 GGTACCAAACCGATCGGTGGGCCAACTTGC 20 90 1 CGATCGGTGG 0.563348 -211 ATCGTCCAGGCGACGGTGGCCTGAGCGGCA 20 159 1 CGACGGTGGC 0.785854 -142 CCGGCACTCCCTGCGGCAACCATGCCGCAA 20 210 0 CTGCGGCAAC 0.670626 -91 CCCAACCCGCAGCGGGCCAGGTTGCCGACC 20 247 0 AGCGGGCCAG 0.841228 -54 CGCTGTTGGCCGGTGCGTACGCTCCTGTGG 21 174 0 CGGTGCGTAC 0.687469 -51 GGCGCGGCGGACCTGGTTGCCT 22 3 1 CGCGGCGGAC 0.937565 -298 TCGGAATCCCAGCCGGTAGGCAACCAGGTC 22 20 0 AGCCGGTAGG 0.589704 -281 CTGGTCACTTCTGGCGGTAGGCGCAATGGC 22 74 0 CTGGCGGTAG 0.36757 -227 CTCGATGGACAGCCGGGTGGACGCGCTGAC 22 105 0 AGCCGGGTGG 0.893372 -196 GGCCGAATACCGCGGCTGGGAGCTAGCACG 22 134 1 CGCGGCTGGG 0.841467 -167 GCCTCTATACCGACGGCAGCAGGCGGGTAT 22 169 1 CGACGGCAGC 0.886255 -132 CAAGAAATCTCGCTGGGCAGACGCAGAGGC 22 209 1 CGCTGGGCAG 0.932573 -92 AGAGGCGAACCGCCGGCCAGACCAGCCGCA 22 233 1 CGCCGGCCAG 0.7215 -68 AGAGCCACAGCTGCGGCTGGTCTGGCCGGC 22 244 0 CTGCGGCTGG 0.800147 -57 GCGGTCTGCGCGCGGGCTGGCCCCGGCCTT 22 275 0 CGCGGGCTGG 0.972134 -26 ATCCGGGCGGTTTCGGGCGC 24 1 1 ATCCGGGCGG 0.727872 -87 ATCGGCGGCAGGGTGAGGGCTG 24 76 0 CGGCGGCAGG 0.963736 -12 TTTGCGTCTGCTCGCGCACCCCGGAGTAGC 25 61 1 CTCGCGCACC 0.559559 -29 GGCATGGGTTAGCTGCCAGGTGCATTCGAG 26 19 0 AGCTGCCAGG 0.485261 -63 TTTCGCGGTGCGCGCGCGCCAAAGCCAACC 26 53 0 CGCGCGCGCC 0.930037 -29 CAAGGGTAGTCTGTGGCCCC 27 16 1 CTGTGGCCCC 0.645619 -10 CGTTGTACTCCTGTGGCGCGGATCTGGGTG 28 17 1 CTGTGGCGCG 0.5512 -148 AGCGCGGCGAAGCCGGGCACAGCGAGTCGA 28 55 0 AGCCGGGCAC 0.905332 -110 CGCTTGCGATCGCCCGCTGGGTTTGTTTGG 28 81 1 CGCCCGCTGG 0.946576 -84 CGGCGAGTCGCTGCGGCGGCTTCGCCGCGC 28 111 1 CTGCGGCGGC 0.92986 -54 GCCGCGCTTGCGATCGCCGCTAGGCTGACC 28 134 1 CGATCGCCGC 0.783378 -31 ACACGCGGTTCTGCGCGTACCGCACCATTT 29 46 0 CTGCGCGTAC 0.43685 -255 CGCCCGATACAGGCCGGGGGTGCTCCCTTG 29 104 0 AGGCCGGGGG 0.869068 -197 CGGCCTGTATCGGGCGGTCCTCGGTAGTGG 29 118 1 CGGGCGGTCC 0.877171 -183 AGATCCGGAGAGCCCGGCAGCCACTACCGA 29 138 0 AGCCCGGCAG 0.75862 -163 CTCTCCGGATCTGGGGCAGGTCGGCCGCTT 29 156 1 CTGGGGCAGG 0.785754 -145 TAATCCAGAGAGGCCGCACGGACGTC 29 285 1 AGGCCGCACG 0.45971 -16 AAGAGGCGTGCGCGCCGGAGG 31 2 0 CGCGCCGGAG 0.493648 -64 TAGTCCGTTTCGCCCGGCCCCCCAGAGTAA 31 30 0 CGCCCGGCCC 0.939812 -36 GGTGGCACCTAGGGGGTGGCACGGAGAAGA 33 50 0 AGGGGGTGGC 0.767476 -251 CACTACACCTAGGGGGTGGCACCTAGGGGG 33 64 0 AGGGGGTGGC 0.767476 -237 AACCTGGGATCTGCCGGTACTCGAAAACAC 33 91 0 CTGCCGGTAC 0.544291 -210 AAGTTCATCGCGCCCCGTGGATCTGGTGAG 33 129 0 CGCCCCGTGG 0.868334 -172 CTGGCGATGCCGATGCCGGGAAGTTCATCG 33 149 0 CGATGCCGGG 0.620655 -152 TGCGTCTGCTCGCGGGTGGGAGGCAC 34 7 0 CGCGGGTGGG 0.942858 -90 GCGGCCCTGTCGGTGGCGGCGCGAGCAGAC 34 74 0 CGGTGGCGGC 0.974076 -23 CGCCACCGACAGGGCCGCGCC 34 86 1 AGGGCCGCGC 0.742838 -11 CCTGCGGGGCTGACCGACGGCGGC 35 5 1 CGGGGCTGAC 0.665156 -100 CGGGGCTGACCGACGGCGGCTACAGTGACT 35 15 1 CGACGGCGGC 0.947493 -90 CAGGGATCCGAGCGGGCTACTTAGCCTAGG 35 56 0 AGCGGGCTAC 0.783019 -49 CTGAGCCGCTCGCCGGGGAGCGGGTGCTCG 36 30 0 CGCCGGGGAG 0.678343 -35 ACTGGGCGAGCTTAACTGAGC 36 54 0 CTGGGCGAGC 0.665225 -11 CGGGGTTGACCGGTCGCGCGGATGGACGCA 37 27 1 CGGTCGCGCG 0.777577 -78 ACAGGGTCCGAGGTGGCCGCCGCCCGCGCG 38 28 1 AGGTGGCCGC 0.874432 -209 ACAACCGTCTCGCGCGGGCGGCGGCCACCT 38 38 0 CGCGCGGGCG 0.499244 -199 TGTTCGACACCGCGGGCAACCTGGCCAAGT 38 140 0 CGCGGGCAAC 0.948288 -97 CCCCGCTCGTCGATGGGCCGACTAAGAAAA 38 210 0 CGATGGGCCG 0.655354 -27 CGCAAAACGACGGTGGGGACTTGTC 39 6 0 CGGTGGGGAC 0.938648 -186 ACACTTATACCTGGGGTCGCAAAACGACGG 39 23 0 CTGGGGTCGC 0.712488 -169 GCTTCCGGTGCGGTCCGGCGGACACTTATA 39 44 0 CGGTCCGGCG 0.565124 -148 CCGCCCAGCTCGGCGGCCCGTTGCTCCACC 39 170 0 CGGCGGCCCG 0.54483 -22 CGGGCCGCCGAGCTGGGCGGAA 39 180 1 AGCTGGGCGG 0.883445 -12 GAACCGATTTCGCGGGCTGGGCTGCACAA 40 49 1 CGCGGGCTGG 0.972134 -19 ACCCAACCCTCGGGGGGCGCCGCCCCCCGA 42 11 1 CGGGGGGCGC 0.989611 -141 TTGGGGGGTACTCGGGGGGCGGCGCCCCCC 42 22 0 CTCGGGGGGC 0.952394 -130 ACCCAACCCTCGGGGGGCGCCGCCCCCCGA 42 51 1 CGGGGGGCGC 0.989611 -101 GGTGGGGGTACTCGGGGGGCGGCGCCCCCC 42 62 0 CTCGGGGGGC 0.952394 -90 GCGGCGCCCCCGAGGGTGGGGGTACTCGGG 42 76 0 CGAGGGTGGG 0.701586 -76 TGGGGGCACTCGGGGGCGGCGCCCCCGAGG 42 91 0 CGGGGGCGGC 0.988413 -61 CATATGACGTCTGTGGGGGCACTCGGGGGC 42 104 0 CTGTGGGGGC 0.862933 -48 TGATCGGTATCTGTCGGCGCGGATAGCTAC 43 55 1 CTGTCGGCGC 0.752614 -31 GCCGAGCTTGCGATCGCCCGTAAACTGCCC 44 13 0 CGATCGCCCG 0.448598 -239 GGCGATCGCAAGCTCGGCGCTTGTCGCCGG 44 25 1 AGCTCGGCGC 0.84676 -227 CGGCGCTTGTCGCCGGGTGCGGCGGGTCGC 44 39 1 CGCCGGGTGC 0.984812 -213 CTGAATCCAACGCGGGCGACCCGCCGCACC 44 54 0 CGCGGGCGAC 0.975856 -198 GGCGATCGCAAGCTCGGCGCTTGTCGCCGG 44 84 1 AGCTCGGCGC 0.84676 -168 CGGCGCTTGTCGCCGGGTGCGGCGGGTCGC 44 98 1 CGCCGGGTGC 0.984812 -154 CTGAATCCAACGCGGGCGACCCGCCGCACC 44 113 0 CGCGGGCGAC 0.975856 -139 GGCGATCGCAAGCTCGGCGCTTGTCGCCGG 44 143 1 AGCTCGGCGC 0.84676 -109 CGGCGCTTGTCGCCGGGTGCGGCGGGTCGC 44 157 1 CGCCGGGTGC 0.984812 -95 AAAACCCGGACGCGGGCGACCCGCCGCACC 44 172 0 CGCGGGCGAC 0.975856 -80 CAGGTGATGTCGCTCGGACGTGTCATCCTC 44 227 1 CGCTCGGACG 0.748209 -25 GGCGTGATTTCGGCGCGCGGGTTCCCGCTC 45 11 0 CGGCGCGCGG 0.944666 -79 TCACATTCGACGCTGCGAACACACTCGTCG 45 47 1 CGCTGCGAAC 0.748192 -43 GGACGGACTCAGCGGGCTACCATATGCTGC 46 14 0 AGCGGGCTAC 0.783019 -287 TGGGCTGGAACGCCCGGGACGGACTCAGCG 46 30 0 CGCCCGGGAC 0.958138 -271 ACAGGATAGACGCCGCGCGGGGTCCACCGT 46 72 0 CGCCGCGCGG 0.956149 -229 ATCCTGTGAACTCCCCCAGGGCTGGAAGGC 46 95 1 CTCCCCCAGG 0.464442 -206 CTGTCGGGTGCGCGGGGTCCCCTTCAGCCG 46 143 1 CGCGGGGTCC 0.952911 -158 CGCGACAAACAGCCGGCGACAATATTAAGA 47 59 1 AGCCGGCGAC 0.895458 -242 CGACAAGACGCGACCGCACCCAAGGATTCT 47 86 0 CGACCGCACC 0.567457 -215 GCAAATCGTGCGCCCCCGACACAGCGACTT 47 127 1 CGCCCCCGAC 0.870534 -174 ATAGATGTGACTGGCGCGACTCAATTGGTC 47 162 1 CTGGCGCGAC 0.685232 -139 AATTGGTCAGCGCGGGTCGCCTGCACCGCC 47 184 1 CGCGGGTCGC 0.959484 -117 TGGGCGAGGGAGCGGGGCGGTGCAGGCGAC 47 199 0 AGCGGGGCGG 0.945121 -102 TCCTGGCCGACGATGGGCGCTCAGACGGCG 47 238 1 CGATGGGCGC 0.893108 -63 ATGGGCGCTCAGACGGCGAGTACATCGGGA 47 250 1 AGACGGCGAG 0.452825 -51 CGGGAACACCCGCCCGTACCAGCTACTATC 47 275 1 CGCCCGTACC 0.651958 -26 CCGGGCCGGGCACGGCCAGCC 48 2 1 CGGGCCGGGC 0.939623 -33 TGTCGCTCGCCTGCGGGAACAGCAGTGCCT 49 24 1 CTGCGGGAAC 0.699808 -70 ********** Masking position 2 Map Score: 163.888 Number of sites scoring better than the average of aligned sites = 139034 Number in coding regions = 130051 Number in noncoding regions = 8983 Number of orfs with sites within 600 bp upstream = 1815 Fraction of orfs with sites within 600 bp upstream = 0.291519 Motif number 2 TGACCCGCCACGACGGCCGCAACAGCAGTC 1 194 0 CGACGGCCGC 0.911467 -107 ATTCGTCGTTGGCAGTCCCCACGCTAGCGG 1 236 1 GGCAGTCCCC 0.668563 -65 GCTAGCGGGGCGCTAGCCACGGGATCGAAC 1 258 1 CGCTAGCCAC 0.317854 -43 CGCGCTCATCCGGAGCACACGGCGGA 2 7 0 CGGAGCACAC 0.671428 -275 TACACAACGAGGGCGCTCCCCGATCTGGCG 2 166 1 GGGCGCTCCC 0.507692 -116 CTCCCCGATCTGGCGCGCGCAACGAGGTGC 2 181 1 TGGCGCGCGC 0.906972 -101 GCGTATCTGTCGCCGCACGCTGGC 7 5 0 CGCCGCACGC 0.978995 -27 CCACGCGGGAGGCCGATCACATGCGGCGTC 8 44 0 GGCCGATCAC 0.469834 -37 CCAGCTGGGGTATCCGCATGGGGTCGC 10 8 1 GGGTATCCGC 0.75014 -127 GGGACCCGCTGGGCGACCCCATGCGGATAC 10 20 0 GGGCGACCCC 0.93433 -115 AAAGTCCCCTCGGGACCCGCTGGGCGACCC 10 31 0 CGGGACCCGC 0.943191 -104 CTTAGAGGAGCGGTGCCCACGGGCCCGTTC 12 242 0 CGGTGCCCAC 0.913481 -59 CAGGCCGGAACGCCCCTCACA 15 7 0 CGGAACGCCC 0.80861 -15 CGACGAAGCGGGCCGTGCGCTATGGCCCG 16 10 0 GGCCGTGCGC 0.884843 -39 ACACACTTTGCGACACGCCCGAACGGTGTC 17 21 1 CGACACGCCC 0.808992 -47 CTGCTGGCACCTGCGCCCGCATTCCACGTC 18 59 1 CTGCGCCCGC 0.727994 -45 CCTCACCGCGGGGAACACGCCCTAACGCGG 19 13 0 GGGAACACGC 0.805171 -127 TTCCGTGGGTCGGCAGGCCCAGCAAGGCCA 19 65 1 CGGCAGGCCC 0.917418 -75 CCCGTCTTCACGGAGGTCGCTCA 19 127 1 CGGAGGTCGC 0.756754 -13 TGAACGCTGCGAGCGAGCCCATGTAGAGCG 20 57 1 GAGCGAGCCC 0.620526 -244 TACACGCTCGCGATAGCCGCTGTGAGCCCA 20 122 0 CGATAGCCGC 0.491528 -179 GACGATGATCGGCTACACGCTCGCGATAGC 20 135 0 GGCTACACGC 0.781452 -166 CCAGACTTACCGGCACTCCCTGCGGCAACC 20 219 0 CGGCACTCCC 0.91074 -82 CCGTATGCGCGGTGATCGCTGTTTGTAAT 21 10 1 CGGTGATCGC 0.856453 -215 GCTACAGTGCTGGTGCACGCCATGAAAGAC 21 87 1 TGGTGCACGC 0.672201 -138 ACGCCCACAGGAGCGTACGCACCGGCCAAC 21 170 1 GAGCGTACGC 0.368097 -55 GTAGGCGCAATGGCGCCCACTCGTACTCGT 22 58 0 TGGCGCCCAC 0.696646 -243 TCACTTCTGGCGGTAGGCGCAATGGCGCCC 22 70 0 CGGTAGGCGC 0.810275 -231 ATGGACAGCCGGGTGGACGCGCTGACCCTG 22 101 0 GGGTGGACGC 0.886008 -200 AAATCTCGCTGGGCAGACGCAGAGGCGAAC 22 213 1 GGGCAGACGC 0.884281 -88 CAGACGCAGAGGCGAACCGCCGGCCAGACC 22 226 1 GGCGAACCGC 0.670952 -75 TCTGCGCGCGGGCTGGCCCCGGCCTTCAGA 22 271 0 GGCTGGCCCC 0.893437 -30 CCAGCCCGCGCGCAGACCGCTATCGG 22 285 1 CGCAGACCGC 0.879444 -16 TAGAATTGATCGGTGACCGCCAGCCCTCAC 24 56 1 CGGTGACCGC 0.966287 -32 GACGCTACTCCGGGGTGCGCGAGCAGACGC 25 64 0 CGGGGTGCGC 0.793067 -26 GTTCCTTTCGCGGTGCGCGCGCGCCAAAGC 26 58 0 CGGTGCGCGC 0.976802 -24 CCCGTCGACTCGCTGTGCCCGGCTTCGCCG 28 51 1 CGCTGTGCCC 0.701652 -114 CAAACCCAGCGGGCGATCGCAAGCGCGGCG 28 76 0 GGGCGATCGC 0.940254 -89 GTCAGCCTAGCGGCGATCGCAAGCGCGGCG 28 133 0 CGGCGATCGC 0.950731 -32 ATCGCCGCTAGGCTGACCGCGTGTCAATC 28 146 1 GGCTGACCGC 0.915867 -19 GCAAATGGTGCGGTACGCGCAGAACCGCGT 29 44 1 CGGTACGCGC 0.932657 -257 CTCGCTGGAACGGCACACGCGGTTCTGCGC 29 60 0 CGGCACACGC 0.968092 -241 GCATATCCAAGGGAGCACCCCCGGCCTGTA 29 97 1 GGGAGCACCC 0.49523 -204 CAGCCACTACCGAGGACCGCCCGATACAGG 29 121 0 CGAGGACCGC 0.673365 -180 GCCCCAGATCCGGAGAGCCCGGCAGCCACT 29 143 0 CGGAGAGCCC 0.866112 -158 ATCTGGGGCAGGTCGGCCGCTTCGATCGAT 29 164 1 GGTCGGCCGC 0.81246 -137 TCTCGGGGTTCGGCGAACCCGCTGGATTGC 29 231 1 CGGCGAACCC 0.962087 -70 CGAGCGGATTCGCGACACGCAAACACAACT 30 24 1 CGCGACACGC 0.729691 -107 CCTCCGGCGCGCACGCCTCTTACT 31 5 1 CGGCGCGCAC 0.936326 -61 GACTATCACGCGCTGAACGCG 31 55 1 CGCTGAACGC 0.822972 -11 CTCTTCTCCGTGCCACCCCCTAGGTGCCAC 33 49 1 TGCCACCCCC 0.684761 -252 ACCCCCTAGGTGCCACCCCCTAGGTGTAGT 33 63 1 TGCCACCCCC 0.684761 -238 TTCGAGTACCGGCAGATCCCAGGTTCACCA 33 96 1 GGCAGATCCC 0.500989 -205 CGCAAAGGAGCGGTACGCCC 33 291 1 CGGTACGCCC 0.832723 -10 CGTCTGCTCGCGCCGCCACCGACAGGGCCG 34 73 1 CGCCGCCACC 0.482247 -24 ATCCTTCTTTGGGGGCTCACAGGGATCCGA 35 75 0 GGGGGCTCAC 0.444743 -30 TCTCATCGACGAGCACCCGCTCCCCGGCGA 36 21 1 GAGCACCCGC 0.787515 -44 TCGCGCGGATGGACGCACCCGTATCAGCCC 37 40 1 GGACGCACCC 0.837172 -65 CCCTGTATCGGGGAGATCCCGGT 38 4 0 GGGAGATCCC 0.670428 -233 CCGAGGTGGCCGCCGCCCGCGCGAGACGGT 38 35 1 CGCCGCCCGC 0.992569 -202 ATTCACCGCTGGCAAACCCCTTAAAAGCAC 38 77 1 GGCAAACCCC 0.594288 -160 AACTTGGCCAGGTTGCCCGCGGTGTCGAAC 38 139 1 GGTTGCCCGC 0.813241 -98 TCGGCAACCCCGCTCGTCGAT 38 226 0 CGGCAACCCC 0.95786 -11 CGGTGCGGTCCGGCGGACACTTATACCTGG 39 39 0 CGGCGGACAC 0.788345 -153 CCGCCCAGCTCGGCGGCCCGTTGCTCCACC 39 170 0 CGGCGGCCCG 0.476676 -22 ACTCGGGGGGCGGCGCCCCCCGAGGGTTGG 42 13 0 CGGCGCCCCC 0.835091 -139 GCCGCCCCCCGAGTACCCCCCAACCCAACC 42 29 1 GAGTACCCCC 0.477156 -123 ACTCGGGGGGCGGCGCCCCCCGAGGGTTGG 42 53 0 CGGCGCCCCC 0.835091 -99 GCCGCCCCCCGAGTACCCCCACCCTCGGGG 42 69 1 GAGTACCCCC 0.477156 -83 CACTCGGGGGCGGCGCCCCCGAGGGTGGGG 42 85 0 CGGCGCCCCC 0.835091 -67 CGCCGCCCCCGAGTGCCCCCACAGACGTCA 42 100 1 GAGTGCCCCC 0.711998 -52 TTCTTCCTTTCGACGTCCGCCATATGACGT 42 124 0 CGACGTCCGC 0.820936 -28 GGCAGTTTACGGGCGATCGCAAGCTCGGCG 44 14 1 GGGCGATCGC 0.940254 -238 CCGCACCCGGCGACAAGCGCCGAGCTTGCG 44 31 0 CGACAAGCGC 0.62843 -221 GCGGGCGACCCGCCGCACCCGGCGACAAGC 44 43 0 CGCCGCACCC 0.973408 -209 GGGTGCGGCGGGTCGCCCGCGTTGGATTCA 44 53 1 GGTCGCCCGC 0.933452 -199 GTTGGATTCAGGGCGATCGCAAGCTCGGCG 44 73 1 GGGCGATCGC 0.940254 -179 CCGCACCCGGCGACAAGCGCCGAGCTTGCG 44 90 0 CGACAAGCGC 0.62843 -162 GCGGGCGACCCGCCGCACCCGGCGACAAGC 44 102 0 CGCCGCACCC 0.973408 -150 GGGTGCGGCGGGTCGCCCGCGTTGGATTCA 44 112 1 GGTCGCCCGC 0.933452 -140 GTTGGATTCAGGGCGATCGCAAGCTCGGCG 44 132 1 GGGCGATCGC 0.940254 -120 CCGCACCCGGCGACAAGCGCCGAGCTTGCG 44 149 0 CGACAAGCGC 0.62843 -103 GCGGGCGACCCGCCGCACCCGGCGACAAGC 44 161 0 CGCCGCACCC 0.973408 -91 GGGTGCGGCGGGTCGCCCGCGTCCGGGTTT 44 171 1 GGTCGCCCGC 0.933452 -81 GAGCGGGAACCCGCGCGCCGAAAT 45 5 1 GGGAACCCGC 0.921405 -85 ATTAGACTCACGGTGGACCCCGCGCGGCGT 46 63 1 CGGTGGACCC 0.884467 -238 GTCGGGTGCGCGGGGTCCCCTTCAGCCGGG 46 145 1 CGGGGTCCCC 0.766007 -156 GACTGGACCTCGGTATACCCACGGTTTTCG 46 180 1 CGGTATACCC 0.505002 -121 GACAAGACGCGACCGCACCCAAGGATTCTT 47 85 0 GACCGCACCC 0.615504 -216 TCGCTGTGTCGGGGGCGCACGATTTGCCCA 47 124 0 GGGGGCGCAC 0.484312 -177 GGGCGGTGCAGGCGACCCGCGCTGACCAAT 47 185 0 GGCGACCCGC 0.863392 -116 TCCTGGCCGACGATGGGCGCTCAGACGGCG 47 238 1 CGATGGGCGC 0.621196 -63 CGAGTACATCGGGAACACCCGCCCGTACCA 47 266 1 GGGAACACCC 0.505734 -35 CACCCTGGCTGGCCGTGCCCGGCCCGG 48 8 0 GGCCGTGCCC 0.815425 -27 ********** Masking position 8 Map Score: 129.516 Number of sites scoring better than the average of aligned sites = 33374 Number in coding regions = 31105 Number in noncoding regions = 2269 Number of orfs with sites within 600 bp upstream = 1119 Fraction of orfs with sites within 600 bp upstream = 0.17973 Motif number 3 ATTGACCTCTGACCCACCGCGACGAGCCAG 1 120 0 GACCCACCGC 0.932341 -181 CATGACGCGTGACCCGCCACGACGGCCGCA 1 203 0 GACCCGCCAC 0.92677 -98 GTCGTTGGCAGTCCCCACGCTAGCGGGGCG 1 240 1 GTCCCCACGC 0.371532 -61 ACCGTTTGACGAGCCGCGGCCTCGCTGCAA 2 105 1 GAGCCGCGGC 0.610588 -177 CACAACGAGGGCGCTCCCCGATCTGGCGCG 2 168 1 GCGCTCCCCG 0.677955 -114 GGCGCAGCTGACGGCGGTCTTCTA 6 5 1 CAGCTGACGG 0.343252 -67 ATCACATGCGGCGTCACCGCGGTGGCCTCG 8 29 0 GCGTCACCGC 0.610956 -52 GCATGTGATCGGCCTCCCGCGTGGCGGCGT 8 50 1 GGCCTCCCGC 0.544213 -31 GCTTCTCCTCACGCCGCCACGCGGGAGGCC 8 60 0 ACGCCGCCAC 0.569 -21 TTTGTCTGACGAGCAGACGCGGAATCGCAC 9 11 1 GAGCAGACGC 0.901698 -130 GCACTGCGCGGACCTCACGCGTGCGATTCC 9 31 0 GACCTCACGC 0.784066 -110 GTGGCCTACTGCCCTCCCGCCGTTGCGCCG 10 76 1 GCCCTCCCGC 0.950455 -59 ATCGTGCACGCACCCGGCGCAACGGCGGGA 10 90 0 CACCCGGCGC 0.692698 -45 CTGCCCACCTCACCCGCCACTTGACACCGT 12 113 1 CACCCGCCAC 0.742198 -188 CCGTGTCCATCACCCCACGCCGCCATCAGG 14 197 1 CACCCCACGC 0.750601 -31 CACACTTTATGCACCGACGCTGACGTGGAA 18 80 0 GCACCGACGC 0.862428 -24 CGGGGAACACGCCCTAACGCGGGC 19 5 0 GCCCTAACGC 0.73256 -135 CATCCACGGCGCCTCACCGCGGGGAACACG 19 24 0 GCCTCACCGC 0.725065 -116 GTCAAGAACAGCCCTGCCCGTCTTCACGGA 19 111 1 GCCCTGCCCG 0.915853 -29 AATAAGGCAACCCCTGCCGCTCAGGCCACC 20 173 0 CCCCTGCCGC 0.938569 -128 AGCGAATCCGAACCCAACCCGCAGCGGGCC 20 259 0 AACCCAACCC 0.196076 -42 CCGACTGCCGGACTTGACGCCCACAGGAGC 21 154 1 GACTTGACGC 0.554907 -71 CCGGGTGGACGCGCTGACCCTGGTCACTTC 22 93 0 GCGCTGACCC 0.903148 -208 CCGTGCTAGCTCCCAGCCGCGGTATTCGGC 22 135 0 TCCCAGCCGC 0.538809 -166 AAATCTCGCTGGGCAGACGCAGAGGCGAAC 22 213 1 GGGCAGACGC 0.526291 -88 ACGCAGAGGCGAACCGCCGGCCAGACCAGC 22 229 1 GAACCGCCGG 0.703099 -72 CCGCCGGCCAGACCAGCCGCAGCTGTGGCT 22 242 1 GACCAGCCGC 0.973361 -59 GCCAGCCCGCGCGCAGACCGCTATCGG 22 284 1 GCGCAGACCG 0.744294 -17 GCCAGCCCTCACCCTGCCGCCGAT 24 74 1 ACCCTGCCGC 0.840825 -14 CGGGGTGCGCGAGCAGACGCAAAAGCTCCC 25 54 0 GAGCAGACGC 0.901698 -36 GCGTCTGCTCGCGCACCCCGGAGTAGCGTC 25 64 1 GCGCACCCCG 0.691614 -26 CGGGCACAGCGAGTCGACGGGAATACACCC 28 42 0 GAGTCGACGG 0.447826 -123 GCTGTGCCCGGCTTCGCCGCGCTTGCGATC 28 62 1 GCTTCGCCGC 0.339868 -103 CCGCCGCAGCGACTCGCCGCCAAACAAACC 28 100 0 GACTCGCCGC 0.924538 -65 AAGCGCGGCGAAGCCGCCGCAGCGACTCGC 28 113 0 AAGCCGCCGC 0.869368 -52 ATATCCAAGGGAGCACCCCCGGCCTGTATC 29 99 1 GAGCACCCCC 0.811017 -202 CGAAGCGGCCGACCTGCCCCAGATCCGGAG 29 158 0 GACCTGCCCC 0.954185 -143 CGATCGATGGCCGTAGCCGCATTCAGACCT 29 186 1 CCGTAGCCGC 0.519457 -115 AGTCCGTTTCGCCCGGCCCCCCAGAGTAAG 31 29 0 GCCCGGCCCC 0.904946 -37 TCCCACCCGCGAGCAGACGCAAAATCGCCC 34 16 1 GAGCAGACGC 0.901698 -81 GTGGCGGCGCGAGCAGACGCAAAATCGCCC 34 62 0 GAGCAGACGC 0.901698 -35 GCGTCTGCTCGCGCCGCCACCGACAGGGCC 34 72 1 GCGCCGCCAC 0.94287 -25 CCGTCGGTCAGCCCCGCAGG 35 1 0 GCCCCGCAGG 0.590242 -104 TCTCATCGACGAGCACCCGCTCCCCGGCGA 36 21 1 GAGCACCCGC 0.876043 -44 TCCGAGGTGGCCGCCGCCCGCGCGAGACGG 38 34 1 CCGCCGCCCG 0.859224 -203 AGAAAAGCCAGCCTAACCCCGGATCCACAC 38 186 0 GCCTAACCCC 0.319707 -51 GAAGCAGAAGGCCCAAACGGTTAAGAACAT 39 69 1 GCCCAAACGG 0.438386 -123 TTGTGCAGCCCAGCCCGCGAAATCGGT 40 51 0 GCCCAGCCCG 0.920603 -17 CCCTCGGGGGGCGCCGCCCCCCGAGTACCC 42 17 1 GCGCCGCCCC 0.987532 -135 CCCCGAGTACCCCCCAACCCAACCCTCGGG 42 35 1 CCCCCAACCC 0.580189 -117 CCCTCGGGGGGCGCCGCCCCCCGAGTACCC 42 57 1 GCGCCGCCCC 0.987532 -95 CCCCCCGAGTACCCCCACCCTCGGGGGCGC 42 73 1 ACCCCCACCC 0.553031 -79 ACCCTCGGGGGCGCCGCCCCCGAGTGCCCC 42 89 1 GCGCCGCCCC 0.987532 -63 GTAGCTATCCGCGCCGACAGATACCGATCA 43 55 0 GCGCCGACAG 0.620057 -31 CAACGCGGGCGACCCGCCGCACCCGGCGAC 44 47 0 GACCCGCCGC 0.992058 -205 CAACGCGGGCGACCCGCCGCACCCGGCGAC 44 106 0 GACCCGCCGC 0.992058 -146 GGACGCGGGCGACCCGCCGCACCCGGCGAC 44 165 0 GACCCGCCGC 0.992058 -87 ACTCACGGTGGACCCCGCGCGGCGTCTATC 46 68 1 GACCCCGCGC 0.73902 -233 TCTATCCTGTGAACTCCCCCAGGGCTGGAA 46 92 1 GAACTCCCCC 0.296984 -209 CCGACAGAGCCCGTTGACCCTTGCTGCCTT 46 120 0 CCGTTGACCC 0.184103 -181 GGCTGAAGGGGACCCCGCGCACCCGACAGA 46 142 0 GACCCCGCGC 0.73902 -159 GCCCTGAAGCGCCGCATAAT 46 291 0 GCCCTGAAGC 0.354557 -10 AAATCGTGCGCCCCCGACACAGCGACTTCT 47 129 1 CCCCCGACAC 0.676357 -172 CGGGTCGCCTGCACCGCCCCGCTCCCTCGC 47 196 1 GCACCGCCCC 0.913479 -105 ACATCGGGAACACCCGCCCGTACCAGCTAC 47 271 1 CACCCGCCCG 0.8216 -30 GGCTGGCCGTGCCCGGCCCGG 48 2 0 GCCCGGCCCG 0.717528 -33 GAGCGACAGCACCCAGACCCA 49 2 0 ACCCAGACCC 0.558857 -92 ********** Masking position 8 Map Score: 84.401 Number of sites scoring better than the average of aligned sites = 34084 Number in coding regions = 31670 Number in noncoding regions = 2414 Number of orfs with sites within 600 bp upstream = 1168 Fraction of orfs with sites within 600 bp upstream = 0.1876 Motif number 4 GTGGTATCCAGCGAACGATCCCCAGCGCTGTC 1 80 0 GCGAACTCCC 0.928661 -221 AACCGAGAATGCGACCAGGTCACAACCCAGTC 9 89 0 GCGACCGTCA 0.476136 -52 CTACTTCCTGCCCACCTCACCCGCCACTTGAC 12 106 1 CCCACCACCC 0.485878 -195 GTTTCGGCCGGCGAACGATCTGTCCGGATCTC 12 192 0 GCGAACTCTG 0.283497 -109 AATTATCGCGGCGAACGGGCCCGTGGGCACCG 12 230 1 GCGAACGCCC 0.988733 -71 CGTGCCAGGGGACCATGCCGGCGTTGCCTG 14 9 1 GGGACCGCCG 0.951039 -219 GAGCGTGATCGCGACCTAACCGGCAGGCAACG 14 32 0 GCGACCACCG 0.959829 -196 AGATCCCGTCGCAAACAGATCCTTGGTCGCCG 14 106 1 GCAAACATCC 0.351074 -122 GACACACTTTGCGACACGCCCGAACGGTGTCG 17 20 1 GCGACACCCG 0.690775 -48 CGGTCCAGCCTACCGAGCCCGGGCGTAAAA 18 9 1 CCTACCGCCC 0.709129 -95 CCTCACCGCGGGGAACACGCCCTAACGCGGGC 19 11 0 GGGAACGCCC 0.958382 -129 GCCGACCCACGGAAACCCACCCTAACATCCAC 19 47 0 GGAAACACCC 0.658198 -93 CTTGAACGCTGCGAGCGAGCCCATGTAGAGCG 20 55 1 GCGAGCGCCC 0.911869 -246 CATCGTCCAGGCGACGGTGGCCTGAGCGGCAG 20 158 1 GCGACGGGCC 0.636296 -143 GATGAATAAGGCAACCCCTGCCGCTCAGGCCA 20 175 0 GCAACCTGCC 0.504784 -126 ACTCCCTGCGGCAACCATGCCGCAAGAGGATG 20 203 0 GCAACCGCCG 0.966891 -98 AGTCTGGTCGGCAACCTGGCCCGCTGCGGGTT 20 242 1 GCAACCGCCC 0.988553 -59 CGAGCGAATCCGAACCCAACCCGCAGCGGGCC 20 259 0 CGAACCACCC 0.641939 -42 CAGCCGGTAGGCAACCAGGTCCGCCGCGCC 22 9 0 GCAACCGTCC 0.83826 -292 TTCTTGCGGCGCAACAATACCCGCCTGCTGCC 22 183 0 GCAACAACCC 0.88771 -118 ATGAAAGCGCCCGAAACCGCCCGGAT 24 5 0 CCGAAAGCCC 0.93343 -83 GCGAAAAGACGCAAAAGCTCCCAAATCCGGTC 25 16 1 GCAAAATCCC 0.59884 -74 GCGAGCAGACGCAAAAGCTCCCAAATCCGACC 25 44 0 GCAAAATCCC 0.59884 -46 CGACTCGCCGCCAAACAAACCCAGCGGGCGAT 28 89 0 CCAAACACCC 0.770785 -76 CGCAAGCGCGGCGAAGCCGCCGCAGCGACTCG 28 114 0 GCGAAGGCCG 0.712693 -51 ATTTGCTGGGCCGAACCGGCCCAGAACGTTCT 29 18 0 CCGAACGCCC 0.975693 -283 ATCGAAGCGGCCGACCTGCCCCAGATCCGGAG 29 158 0 CCGACCCCCC 0.874802 -143 TCGGGGTTCGGCGAACCCGCTGGATTGCGCGT 29 233 1 GCGAACGCTG 0.761396 -68 GCGTGACGACGCGAAACAGCTCAATAATCCAG 29 261 1 GCGAAAGCTC 0.767591 -40 CCGGCGAAACAGGCGAGCGGATTCG 30 4 1 GCGAAAGGCG 0.546542 -127 CCGTCATAGCGCGACCACGTCCGTCGACCTGG 33 175 0 GCGACCGTCC 0.941906 -126 GTTGAGCGGCCCGACAAGGCTCCAGATTCCCG 33 204 0 CCGACAGCTC 0.754592 -97 GCGAGCAGACGCAAAATCGCCCATTTTCATGA 34 24 1 GCAAAAGCCC 0.923448 -73 GCGAGCAGACGCAAAATCGCCCTTTTCGTCAT 34 52 0 GCAAAAGCCC 0.923448 -45 CGCGCCGCCACCGACAGGGCCGCGCC 34 81 1 CCGACAGCCG 0.921837 -16 CCCCTTTTAGGGGACCGAGCCACGATTGTTAT 37 68 1 GGGACCGCCA 0.763882 -37 GACACCGCGGGCAACCTGGCCAAGTTAAGCTC 38 133 0 GCAACCGCCA 0.829355 -104 TCGGCAACCCCGCTCGTCGATGGGC 38 222 0 GCAACCGCTC 0.883555 -15 AAGTGTCCGCCGGACCGCACCGGAAGCAGAAG 39 47 1 CGGACCACCG 0.653744 -145 GAGCCGAAGACGGACAACGCCG 40 1 0 CGGACAGCCG 0.715756 -67 TTGTGCAGCCCAGCCCGCGAAATCGG 40 52 0 GCAGCCGCCC 0.766395 -16 CGAGTACCCCCCAACCCAACCCTCGGGGGGCG 42 38 1 CCAACCACCC 0.893907 -114 CGTTCGTTTCGCGACAATTCCGTGATCTTTCG 43 22 0 GCGACATCCG 0.797702 -64 ACACGTCCGAGCGACATCACCTGGTCGCTACG 44 218 0 GCGACAACCT 0.354291 -34 GAGCGGGAACCCGCGCGCCGAAATCA 45 5 1 GGGAACGCGC 0.532756 -85 ATTCGACGCTGCGAACACACTCGTCGCCTAGG 45 51 1 GCGAACACTC 0.712465 -39 CCCCGCGCACCCGACAGAGCCCGTTGACCCTT 46 128 0 CCGACAGCCC 0.972321 -173 CCGGCTGAAGGGGACCCCGCGCACCCGACAGA 46 142 0 GGGACCGCGC 0.740552 -159 TTTCGACTCGGCGAAAGGGCCCACGGTGTCGT 46 205 1 GCGAAAGCCC 0.972107 -96 ATACCTCGTCCCGACACCGGCCAATGCGACG 47 10 0 CCGACAGGCC 0.769124 -291 GCGACAAGACGCGACCGCACCCAAGGATTCTT 47 85 0 GCGACCACCC 0.986019 -216 CCGCAGGCGAGCGACAGCACCCAGACCCA 49 8 0 GCGACAACCC 0.961058 -86 ****** **** Masking position 4 Map Score: 77.2839 Number of sites scoring better than the average of aligned sites = 12749 Number in coding regions = 11855 Number in noncoding regions = 894 Number of orfs with sites within 600 bp upstream = 642 Fraction of orfs with sites within 600 bp upstream = 0.103116 Motif number 5 CAACGACACAGCCAGCACACAGCACAATTC 2 49 0 GCCAGCACAC 0.60984 -233 TCTTTGTCCTGCCAACCTGAGGAGCAGATA 3 18 1 GCCAACCTGA 0.622038 -56 AGTGCGAGTGGGCAACACGGCAGCGTCGAT 4 25 0 GGCAACACGG 0.811009 -110 CAATCTCGACGCCAGCCTTGACCGTGATGC 4 70 1 GCCAGCCTTG 0.530537 -65 GCCAGCGTGCGGCGACAGAT 7 1 1 GCCAGCGTGC 0.601832 -31 TTCTCCTCACGCCGCCACGCGGGAGGCCGA 8 58 0 GCCGCCACGC 0.525921 -23 CCTATCCGCTGGCGGCCCGGAACCGAGAAT 9 111 0 GGCGGCCCGG 0.983838 -30 GAGGGCAGTAGGCCACCAGCGCCGGTGGCC 10 62 0 GGCCACCAGC 0.676395 -73 GTGGCCTACTGCCCTCCCGCCGTTGCGCCG 10 76 1 GCCCTCCCGC 0.528589 -59 GTCGAGATCGCCAGCTAGCGCCGATATCC 12 10 1 GCCAGCTAGC 0.494082 -291 TGAGGAATGCGCCGTCCTGCGCTATTGTTG 12 63 1 GCCGTCCTGC 0.843686 -238 GGCAGGCAACGCCGGCATGGTCCCCTGGCA 14 13 0 GCCGGCATGG 0.842033 -215 GTGCGACGTTGGCGGCAATCAGCTTGTTAC 14 76 0 GGCGGCAATC 0.302591 -152 CGGCCGGTGCGGCGACCAAGGATCTGTTTG 14 117 0 GGCGACCAAG 0.676421 -111 GGGTCATGAAGCCAACCTACTAGCACATGA 14 169 0 GCCAACCTAC 0.704459 -59 AGCTCCTGATGGCGGCGTGGGGTGATGGAC 14 201 0 GGCGGCGTGG 0.570007 -27 TGCTGGGCCTGCCGACCCACGGAAACCCAC 19 59 0 GCCGACCCAC 0.915034 -81 GCGGATAGCAGCCAGCCAAGCTTGAACGCT 20 35 1 GCCAGCCAAG 0.685424 -266 CGATCGGTGGGCCAACTTGCCATGGGCTCA 20 100 1 GCCAACTTGC 0.404586 -201 CACTCCCTGCGGCAACCATGCCGCAAGAGG 20 206 0 GGCAACCATG 0.382171 -95 AAGTCTGGTCGGCAACCTGGCCCGCTGCGG 20 241 1 GGCAACCTGG 0.903948 -60 CGAATCCGAACCCAACCCGCAGCGGGCCAG 20 257 0 CCCAACCCGC 0.751342 -44 CGAGGGCCGTCCTGCCTTGCCATGG 21 210 0 GCCGTCCTGC 0.843686 -15 CCAGCCGGTAGGCAACCAGGTCCGCCGCGC 22 12 0 GGCAACCAGG 0.903948 -289 GAGGCGAACCGCCGGCCAGACCAGCCGCAG 22 234 1 GCCGGCCAGA 0.805721 -67 GAAGGCCGGGGCCAGCCCGCGCGCAGACCG 22 274 1 GCCAGCCCGC 0.985083 -27 ATCGGTGACCGCCAGCCCTCACCCTGCCGC 24 64 1 GCCAGCCCTC 0.820888 -24 GCGCGCCAAAGCCAACCCACGGGCATGGGT 26 40 0 GCCAACCCAC 0.860038 -42 TTGACACGCGGTCAGCCTAGCGGCGATCGC 28 143 0 GTCAGCCTAG 0.169559 -22 CATTTGCTGGGCCGAACCGGCCCAGAACGT 29 21 0 GCCGAACCGG 0.594402 -280 GATCGAAGCGGCCGACCTGCCCCAGATCCG 29 161 0 GCCGACCTGC 0.970548 -140 TCGGGGTTCGGCGAACCCGCTGGATTGCGC 29 233 1 GCGAACCCGC 0.52488 -68 GCTGTTTCGCGTCGTCACGCGCAATCCAGC 29 251 0 GTCGTCACGC 0.187496 -50 GACCACGTCCGTCGACCTGGCGATGCCGAT 33 165 0 GTCGACCTGG 0.662584 -136 TCGCGCGGGCGGCGGCCACCTCGGACCCTG 38 29 0 GGCGGCCACC 0.669934 -208 CGACACCGCGGGCAACCTGGCCAAGTTAAG 38 136 0 GGCAACCTGG 0.903948 -101 ACTAAGAAAAGCCAGCCTAACCCCGGATCC 38 190 0 GCCAGCCTAA 0.230733 -47 TCGGCAACCCCGCTCGTCGATG 38 225 0 GGCAACCCCG 0.569337 -12 ATAAGTGTCCGCCGGACCGCACCGGAAGCA 39 45 1 GCCGGACCGC 0.766378 -147 CGCCCAGCTCGGCGGCCCGTTGCTCCACCC 39 169 0 GGCGGCCCGT 0.71899 -23 TTGTGCAGCCCAGCCCGCGAAATCGGTT 40 50 0 CCCAGCCCGC 0.812514 -18 CGCCGCACCCGGCGACAAGCGCCGAGCTTG 44 33 0 GGCGACAAGC 0.821115 -219 ATCCAACGCGGGCGACCCGCCGCACCCGGC 44 50 0 GGCGACCCGC 0.985268 -202 CGCCGCACCCGGCGACAAGCGCCGAGCTTG 44 92 0 GGCGACAAGC 0.821115 -160 ATCCAACGCGGGCGACCCGCCGCACCCGGC 44 109 0 GGCGACCCGC 0.985268 -143 CGCCGCACCCGGCGACAAGCGCCGAGCTTG 44 151 0 GGCGACAAGC 0.821115 -101 CCCGGACGCGGGCGACCCGCCGCACCCGGC 44 168 0 GGCGACCCGC 0.985268 -84 GGTTTTACGGGCCGACACGATGCGTAGCGA 44 196 1 GCCGACACGA 0.568101 -56 CGCAGCATATGGTAGCCCGCTGAGTCCGTC 46 13 1 GGTAGCCCGC 0.456856 -288 AGGGCTGGAAGGCAGCAAGGGTCAACGGGC 46 112 1 GGCAGCAAGG 0.705353 -189 GGGCGGTGCAGGCGACCCGCGCTGACCAAT 47 185 0 GGCGACCCGC 0.985268 -116 AGCGCCCATCGTCGGCCAGGACTTATTCGT 47 229 0 GTCGGCCAGG 0.738407 -72 GCTGGCCGTGCCCGGCCCGG 48 1 0 CCCGGCCCGG 0.828088 -34 GCCGGGCACGGCCAGCCAGGGTGAAGTGCT 48 15 1 GCCAGCCAGG 0.945004 -20 ********** Masking position 6 Map Score: 69.0686 Number of sites scoring better than the average of aligned sites = 24444 Number in coding regions = 22849 Number in noncoding regions = 1595 Number of orfs with sites within 600 bp upstream = 915 Fraction of orfs with sites within 600 bp upstream = 0.146964 Motif number 6 TCCCCGATCTGGCGCGCGCAACGAGGTGCG 2 182 1 GGCGCGCGCA 0.705325 -100 CTGCCAACCTGAGGAGCAGATAAGATTGAC 3 26 1 GAGGAGCAGA 0.573635 -48 GCTGAGCAGATTACGACAAG 6 62 0 GCTGAGCAGA 0.577787 -10 CCGACGAGCGTATCTGTCGCCG 7 20 0 GACGAGCGTA 0.359254 -12 TTTGTCTGACGAGCAGACGCGGAATCG 9 8 1 GACGAGCAGA 0.830433 -133 GAGGAATCGCACTGCGCGGACCTCACGCGT 9 39 0 ACTGCGCGGA 0.353803 -102 CACCTTCCACGCCGAGCAGACGAGGAATCG 9 60 0 GCCGAGCAGA 0.942169 -81 CTATCCGCTGGCGGCCCGGAACCGAGAATG 9 110 0 GCGGCCCGGA 0.924742 -31 AGAGCCCTTAGAGGAGCGGTGCCCACGGGC 12 248 0 GAGGAGCGGT 0.216298 -53 TGCCGCCAACGTCGCACAGATCCCGTCGCA 14 89 1 GTCGCACAGA 0.539353 -139 TCAGGCCACCGTCGCCTGGACGATGATCGG 20 153 0 GTCGCCTGGA 0.228234 -148 CGGCATGGTTGCCGCAGGGAGTGCCGGTAA 20 213 1 GCCGCAGGGA 0.403303 -88 GGGCCAGGTTGCCGACCAGACTTACCGGCA 20 234 0 GCCGACCAGA 0.818586 -67 CACCTTACTAGCCGAGCGAATCCGAACCCA 20 273 0 GCCGAGCGAA 0.768852 -28 CAGCCGGGTGGACGCGCTGACCCTGGTCAC 22 96 0 GACGCGCTGA 0.601288 -205 GAGGCGAACCGCCGGCCAGACCAGCCGCAG 22 234 1 GCCGGCCAGA 0.620291 -67 AGCGCCCGAAACCGCCCGGAT 24 2 0 ACCGCCCGGA 0.619691 -86 AGCTCCCAAATCCGACCGGATTTGGGAGCT 25 31 0 TCCGACCGGA 0.574882 -59 TTGTACTCCTGTGGCGCGGATCTGGGTGTA 28 19 1 GTGGCGCGGA 0.930781 -146 AATGGTGCGGTACGCGCAGAACCGCGTGTG 29 47 1 TACGCGCAGA 0.470741 -254 ATCCAGAGAGGCCGCACGGACGTC 29 287 1 GCCGCACGGA 0.941523 -14 CGGCGAAACAGGCGAGCGGATTCGCGACAC 30 12 1 GGCGAGCGGA 0.966674 -119 ACTCTGGGGGGCCGGGCGAAACGGACTATC 31 32 1 GCCGGGCGAA 0.530945 -34 CACCTAGGGGGTGGCACGGAGAAGAGATAC 33 45 0 GTGGCACGGA 0.596031 -256 CTCACAGGGATCCGAGCGGGCTACTTAGCC 35 60 0 TCCGAGCGGG 0.634749 -45 GCCGCTCGCCGGGGAGCGGGTGCTCGTCGA 36 26 0 GGGGAGCGGG 0.711386 -39 CCCGCTCCCCGGCGAGCGGCTCAGTTAAGC 36 36 1 GGCGAGCGGC 0.656921 -29 GGGTTGACCGGTCGCGCGGATGGACGCACC 37 29 1 GTCGCGCGGA 0.939379 -76 TCGGCCCATCGACGAGCGGGGTTGCCGA 38 219 1 GACGAGCGGG 0.866547 -18 GGGCCGCCGAGCTGGGCGGAA 39 181 1 GCTGGGCGGA 0.66096 -11 TCGGTATCTGTCGGCGCGGATAGCTACTGT 43 58 1 TCGGCGCGGA 0.737267 -28 ACCAGGTGATGTCGCTCGGACGTGTCATCC 44 225 1 GTCGCTCGGA 0.727632 -27 GCGTGATTTCGGCGCGCGGGTTCCCGCTC 45 10 0 GGCGCGCGGG 0.948967 -80 CAGGATAGACGCCGCGCGGGGTCCACCGTG 46 71 0 GCCGCGCGGG 0.917653 -230 CCGGCTGTTTGTCGCGCGGAGATGGGCACG 47 45 0 GTCGCGCGGA 0.939379 -256 GCCGACGATGGGCGCTCAGACGGCGAGTAC 47 243 1 GGCGCTCAGA 0.463777 -58 ********** Masking position 4 Map Score: 37.1662 Number of sites scoring better than the average of aligned sites = 9379 Number in coding regions = 8593 Number in noncoding regions = 786 Number of orfs with sites within 600 bp upstream = 550 Fraction of orfs with sites within 600 bp upstream = 0.0883392 Motif number 7 AGCGCTGTCTTTCCAAGAACAAACGACGAAGAAATCTC 1 51 0 TCAGACCGCG 0.894187 -250 GCGGGTCACGCGTCATGGGCATTCGTCGTTGGCAGTCC 1 216 1 CCAGGCCGCG 0.978337 -85 CCGTCGCGCTCATCCGGAGCACACGGCGGA 2 3 0 CCCGACCGCG 0.926291 -279 TCAATGTTTGCAGCGAGGCCGCGGCTCGTCAAACGGTT 2 104 0 CCGGGCGCCG 0.961394 -178 TGTATTTACACAACGAGGGCGCTCCCCGATCTGGCGCG 2 160 1 CCGGGCCCCG 0.991777 -122 CTGTGCGCTGCATCACGGTCAAGGCTGGCGTCGAGATT 4 71 0 CCAGGCGCGG 0.606159 -64 AGGAATCGCACTGCGCGGACCTCACGCGTGCGATTCCG 9 30 0 CCGGGCACCG 0.793945 -111 CTCAAATACCCGGCAATAACCATCCCCGGATATCGGCG 12 29 0 CCATACCCCG 0.933616 -272 GCGCAACGTCCAACAATAGCGCAGGACGGCGCATTCCT 12 65 0 CCATACGGCG 0.584343 -236 GGAGCGGTGCCCACGGGCCCGTTCGCCGCGATAATTTT 12 228 0 CCGGCCCGCG 0.901419 -73 CCCACGCCGCCATCAGGAGCTACCCACG 14 210 1 CCAGACCCCG 0.991305 -18 ACCCTAACATCCACGGCGCCTCACCGCGGGGAACACGC 19 23 0 CCGCGCCCCG 0.84317 -117 ATCTTGGCAGCGTCAAGAACAGCCCTGCCCGTCTTCAC 19 100 1 CCAGACCCGC 0.669027 -40 TGGGCCAACTTGCCATGGGCTCACAGCGGCTATCGCGA 20 107 1 TCAGGCCACG 0.398171 -194 GACTTGACGCCCACAGGAGCGTACGCACCGGCCAACAG 21 164 1 CCAGACCGAC 0.599915 -61 CGGCCAACAGCGGCATGACCATGGCAAGGCAGGACGGC 21 192 1 CCAGACGCAG 0.703661 -33 TAGCTCCCAGCCGCGGTATTCGGCCTCGATGGACAGCC 22 121 0 CCGTATCCCG 0.704992 -180 GGCGAACCGCCGGCCAGACCAGCCGCAGCTGTGGCTCT 22 236 1 CCCGACCGAG 0.636629 -65 ATAGCGGTCTGCGCGCGGGCTGGCCCCGGCCTTCAGAG 22 270 0 GCGGGCCCCG 0.848863 -31 GGTGCGCGCGCGCCAAAGCCAACCCACGGGCATGGGTT 26 39 0 CCAAGCCCCG 0.699289 -43 CACAGCGAGTCGACGGGAATACACCCAGATCCGCGCCA 28 30 0 CCGGATCCAG 0.698823 -135 GGCGGCTTCGCCGCGCTTGCGATCGCCGCTAGGCTGAC 28 125 1 CCGTTCCGCG 0.398007 -40 GTTCGCCGAACCCCGAGAGCTTCCCAGGAGAAAAGGTC 29 211 0 CCGGACCCGG 0.944542 -90 ATCGGGAATCTGACAGGATCTGGCAACGACTCAAGTAG 33 250 0 TCAGACCACG 0.457491 -51 CTGTCGGTGGCGGCGCGAGCAGACGCAAAATCGCCCTT 34 60 0 CCGGACCGAA 0.487421 -37 CCTGCGGGGCTGACCGACGGCGGCTACAG 35 2 1 CCGGGTCGCG 0.897931 -103 GCTACAGTGACTGCAAGAGCGTACCTAGGCTAAGTAGC 35 33 1 CCAGACCCAG 0.936395 -72 CAGCCCCCTTTTAGGGGACCGAGCCACGATTGTTATAT 37 64 1 TGGGACCCCG 0.423948 -41 TTCGCGACAATTCCGTGATCTTTCGTCGCCATTTGG 43 9 0 TCGGACCGCG 0.935148 -77 CATCGGCAACAGTAGCTATCCGCGCCGACAGATA 43 62 0 CCATACCCCG 0.934381 -24 GCCCTGAATCCAACGCGGGCGACCCGCCGCACCCGGCG 44 49 0 CCGGGCCCCC 0.962548 -203 GCCCTGAATCCAACGCGGGCGACCCGCCGCACCCGGCG 44 108 0 CCGGGCCCCC 0.962548 -144 TGTGAACGTTCGGCGTGATTTCGGCGCGCGGGTTCCCG 45 14 0 CCGGATGCCG 0.754735 -76 CTCTCTTAGCCCCCAAGAGCTAGCGGCACTACACGCAC 46 241 1 CCAGACCGCA 0.816815 -60 CGCACGCCATCAGCAGGATTATGCGGCGCTTCAGGGC 46 274 1 CCAGATCGCG 0.873388 -27 GAGATGGGCACGACGATACCTCGTCCCGACACCGGCCA 47 19 0 CCGTACTCCG 0.355015 -282 CACCTTCGAGCGACAAGACGCGACCGCACCCAAGGATT 47 88 0 CCAGAGCCCA 0.211423 -213 ACGGCGAGTACATCGGGAACACCCGCCCGTACCAGCTA 47 262 1 CCGGACCGCC 0.952284 -39 GCGTTCGTTGTCTCAAGATCTGCCCTCGCACTCGAAAG 49 60 1 TCAGACCCCG 0.932489 -34 * ** ** * ** ** Masking position 4 Map Score: 56.0294 Number of sites scoring better than the average of aligned sites = 9794 Number in coding regions = 9075 Number in noncoding regions = 719 Number of orfs with sites within 600 bp upstream = 529 Fraction of orfs with sites within 600 bp upstream = 0.0849663 Motif number 8 CGTGCGGCGACAGATACGCTCGTCGG 7 16 1 CAGATACGCT 0.409192 -16 CGAGCAGACGCGGAATCGCACGCGTGAGGT 9 20 1 CGGAATCGCA 0.888372 -121 CGAGCAGACGAGGAATCGCACTGCGCGGAC 9 48 0 AGGAATCGCA 0.369944 -93 GCTGGCGGCCCGGAACCGAGAATGCGACCA 9 104 0 CGGAACCGAG 0.85654 -37 TGCCGACCCACGGAAACCCACCCTAACATC 19 50 0 CGGAAACCCA 0.666001 -90 GGGTTGGGTTCGGATTCGCTCGGCTAGTAA 20 269 1 CGGATTCGCT 0.856385 -32 TCGGACATCTCGGAATCCCAGCCGGTAGGC 22 29 0 CGGAATCCCA 0.877558 -272 GATCAATTCTAGGAACCGCTTCACACCGGC 24 37 0 AGGAACCGCT 0.468406 -51 GGAATACACCCAGATCCGCGCCACAGGAGT 28 23 0 CAGATCCGCG 0.958657 -142 GCGGTACGCGCAGAACCGCGTGTGCCGTTC 29 53 1 CAGAACCGCG 0.954829 -248 AGCGGGTTCGCCGAACCCCGAGAGCTTCCC 29 224 0 CCGAACCCCG 0.816646 -77 AACAGGCGAGCGGATTCGCGACACGCAAAC 30 18 1 CGGATTCGCG 0.961877 -113 CAGAACCCCACTTCACCAGG 30 121 0 CAGAACCCCA 0.868224 -10 CGAGTACCGGCAGATCCCAGGTTCACCAGG 33 98 1 CAGATCCCAG 0.711653 -203 CAGGTCTCACCAGATCCACGGGGCGCGATG 33 124 1 CAGATCCACG 0.763134 -177 GACAAGGCTCCAGATTCCCGTCATAGCGCG 33 194 0 CAGATTCCCG 0.904721 -107 CAGATCCTGTCAGATTCCCGATTTCCGCAA 33 266 1 CAGATTCCCG 0.904721 -35 GTAGCCCGCTCGGATCCCTGTGAGCCCCCA 35 66 1 CGGATCCCTG 0.700358 -39 AGCCTAACCCCGGATCCACACACGATCCCG 38 177 0 CGGATCCACA 0.727149 -60 TCGCCTACGACGGAACCGATTTCGCGGGCT 40 37 1 CGGAACCGAT 0.584972 -31 TTTCGGCGCGCGGGTTCCCGCTC 45 4 0 CGGGTTCCCG 0.52487 -86 ********** Masking position 7 Map Score: 16.0804 Number of sites scoring better than the average of aligned sites = 2843 Number in coding regions = 2589 Number in noncoding regions = 254 Number of orfs with sites within 600 bp upstream = 214 Fraction of orfs with sites within 600 bp upstream = 0.034372 Motif number 9 TTCGACTGCTGTTGCGGCCGTCGTGGCGGGT 1 191 1 GTGCGGCCGT 0.767344 -110 CGCAGTGCGATTCCTCGTCTGCTCGGCGTGG 9 53 1 TTCTCGTCTG 0.113859 -88 GAGGGGACTTTTGGCCACCGGCGCTGGTGGC 10 50 1 TTGCCACCGG 0.84112 -85 TCCGGGGATGGTTATTGCCGGGTATTTGAGG 12 37 1 GTATTGCCGG 0.634107 -264 CATGCCGGCGTTGCCTGCCGGTTAGGTCGCG 14 24 1 TTCCTGCCGG 0.892642 -204 AAACAGATCCTTGGTCGCCGCACCGGCCGGT 14 118 1 TTGTCGCCGC 0.75358 -110 TGTGAGGGGCGTTCCGGCCTG 15 11 1 GTCCGGCCTG 0.598812 -11 CACGGCCCGCTTCGTCGCCGGCGCTAGTCTC 16 23 1 TTGTCGCCGG 0.971249 -26 TTGCGGCATGGTTGCCGCAGGGAGTGCCGGT 20 210 1 GTGCCGCAGG 0.899296 -91 GGCTAGTAAGGTGCTCGCCTG 20 290 1 GTCTCGCCTG 0.904937 -11 CCACAGGAGCGTACGCACCGGCCAACAGCGG 21 174 1 GTCGCACCGG 0.741553 -51 GCGGACCTGGTTGCCTACCGGCTGGGATTCC 22 17 1 TTCCTACCGG 0.42937 -284 GCGCCCACTCGTACTCGTCGGACATCTCGGA 22 45 0 GTCTCGTCGG 0.798264 -256 ACGAGTACGAGTGGGCGCCATTGCGCCTACC 22 58 1 GTGGCGCCAT 0.507251 -243 CGGCGCAACAATACCCGCCTGCTGCCGTCGG 22 178 0 ATCCCGCCTG 0.548811 -123 TTTCGGGCGCTTTCATGCCGGTGTGAAGCGG 24 21 1 TTCATGCCGG 0.305309 -67 GAATTGATCGGTGACCGCCAGCCCTCACCCT 24 58 1 GTACCGCCAG 0.684444 -30 CGGGCATGGGTTAGCTGCCAGGTGCATTCGA 26 20 0 TTGCTGCCAG 0.593145 -62 GTCCTCGGTAGTGGCTGCCGGGCTCTCCGGA 29 134 1 GTGCTGCCGG 0.973264 -167 AGTAAGAGGCGTGCGCGCCGGAGG 31 4 0 GTCGCGCCGG 0.969424 -62 CACTACTTGAGTCGTTGCCAGATCCTGTCAG 33 248 1 GTGTTGCCAG 0.738966 -53 TGCAGTCACTGTAGCCGCCGTCGGTCAGCCC 35 17 0 GTGCCGCCGT 0.973291 -88 AGGGTCCGAGGTGGCCGCCGCCCGCGCGAGA 38 30 1 GTGCCGCCGC 0.944942 -207 GCGCGAGACGGTTGTCGCCGTTGTATTCACC 38 53 1 GTGTCGCCGT 0.954631 -184 GACAAGTCCCCACCGTCGTTTTGCGA 39 6 1 GTCCCACCGT 0.716756 -186 CCAGGTATAAGTGTCCGCCGGACCGCACCGG 39 39 1 GTTCCGCCGG 0.901864 -153 TCCGTGATCTTTCGTCGCCATTTGG 43 5 0 TTGTCGCCAT 0.457046 -81 AAGCTCGGCGCTTGTCGCCGGGTGCGGCGGG 44 34 1 CTGTCGCCGG 0.949697 -218 AAGCTCGGCGCTTGTCGCCGGGTGCGGCGGG 44 93 1 CTGTCGCCGG 0.949697 -159 AAGCTCGGCGCTTGTCGCCGGGTGCGGCGGG 44 152 1 CTGTCGCCGG 0.949697 -100 GATTCTTAATATTGTCGCCGGCTGTTTGTCG 47 61 0 ATGTCGCCGG 0.893408 -240 TGTTCCCGATGTACTCGCCGTCTGAGCGCCC 47 252 0 GTCTCGCCGT 0.941675 -49 AGGCACTGCTGTTCCCGCAGGCGAGCGACAG 49 23 0 GTCCCGCAGG 0.872662 -71 ** ******** Masking position 2 Map Score: 36.5122 Number of sites scoring better than the average of aligned sites = 16851 Number in coding regions = 15962 Number in noncoding regions = 889 Number of orfs with sites within 600 bp upstream = 595 Fraction of orfs with sites within 600 bp upstream = 0.095567 Motif number 10 CGTGGCTAGCGCCCCGCTAGCGTGGGGACT 1 249 0 GCCCCGCTAG 0.803176 -52 AGCGTATCTGTCGCCGCACGCTGGC 7 6 0 TCGCCGCACG 0.935556 -26 CACCGCGGTGACGCCGCATGTGATCGGCCT 8 35 1 ACGCCGCATG 0.804993 -46 TCTCGGTTCCGGGCCGCCAGCGGATAGGCT 9 113 1 GGGCCGCCAG 0.910503 -28 TCCCCGGATATCGGCGCTAGCTGGCGATCT 12 15 0 TCGGCGCTAG 0.393989 -286 CTAAACCGCTGAGCCGCAAACTGGGCTCAG 12 152 0 GAGCCGCAAA 0.649139 -149 AACAAGCTGATTGCCGCCAACGTCGCACAG 14 78 1 TTGCCGCCAA 0.48396 -150 CCGTTCGGGCGTGTCGCAAAGTGTGTCTTC 17 17 0 GTGTCGCAAA 0.154593 -51 TGCGGCAACCATGCCGCAAGAGGATGAATA 20 199 0 ATGCCGCAAG 0.874523 -102 TGCGGCATGGTTGCCGCAGGGAGTGCCGGT 20 211 1 TTGCCGCAGG 0.798247 -90 GGGTATTGTTGCGCCGCAAGAAATCTCGCT 22 193 1 GCGCCGCAAG 0.990443 -108 CCAACACTAGATGCCGCAAGATGTATGCCC 23 18 0 ATGCCGCAAG 0.874523 -25 ACCCAGATCCGCGCCACAGGAGTACAACGG 28 16 0 GCGCCACAGG 0.631574 -149 CCGCAGCGACTCGCCGCCAAACAAACCCAG 28 97 0 TCGCCGCCAA 0.774735 -68 GCGCTTGCGATCGCCGCTAGGCTGACCGCG 28 137 1 TCGCCGCTAG 0.923799 -28 TAATCCAGAGAGGCCGCACGGACGTC 29 285 1 AGGCCGCACG 0.653433 -16 AGAGGCGTGCGCGCCGGAGG 31 1 0 GCGCCGGAGG 0.726409 -65 GCGTCTGCTCGCGCCGCCACCGACAGGGCC 34 72 1 GCGCCGCCAC 0.810497 -25 CCGTCGGTCAGCCCCGCAGG 35 1 0 GCCCCGCAGG 0.83012 -104 GAGCTTAACTGAGCCGCTCGCCGGGGAGCG 36 38 0 GAGCCGCTCG 0.663394 -27 GTAGCTATCCGCGCCGACAGATACCGATCA 43 55 0 GCGCCGACAG 0.704637 -31 CACAGGATAGACGCCGCGCGGGGTCCACCG 46 73 0 ACGCCGCGCG 0.640558 -228 CGTGCGTGTAGTGCCGCTAGCTCTTGGGGG 46 250 0 GTGCCGCTAG 0.918493 -51 GCCCTGAAGCGCCGCATAATCCTGCTGA 46 283 0 GCGCCGCATA 0.749581 -18 ********** Masking position 5 Map Score: 17.5275 Number of sites scoring better than the average of aligned sites = 8007 Number in coding regions = 7459 Number in noncoding regions = 548 Number of orfs with sites within 600 bp upstream = 445 Fraction of orfs with sites within 600 bp upstream = 0.0714745 Motif number 11 CAGCGAACGATCCCCAGCGCTGTCTTTCCA 1 74 0 TCCCCAGCGC 0.960202 -227 CTCGTTGCGCGCGCCAGATCGGGGAGCGCC 2 177 0 GCGCCAGATC 0.668334 -105 GTCGAGATTGACACCAGCGCGCGAAAGTGC 4 50 0 ACACCAGCGC 0.809652 -85 TGACCAGTGGTCACCAACGCAAGGAGGCCC 4 114 1 TCACCAACGC 0.65779 -21 AAGACCGCCGTCAGCTGCGCC 6 2 0 TCAGCTGCGC 0.596896 -70 GTGCGATTCCTCGTCTGCTCGGCGTGGAAG 9 57 1 TCGTCTGCTC 0.536542 -84 GGGCAGTAGGCCACCAGCGCCGGTGGCCAA 10 60 0 CCACCAGCGC 0.920633 -75 GTCGAGATCGCCAGCTAGCGCCGATAT 12 8 1 TCGCCAGCTA 0.706788 -293 GGGCAGGAAGTAGCCAGCGCAACGTCCAAC 12 89 0 TAGCCAGCGC 0.724376 -212 TGGACTCCATTCATCAGCTCATGTGCTAGT 14 151 1 TCATCAGCTC 0.63743 -77 GCCCGCTTCGTCGCCGGCGCTAGTCTCATG 16 27 1 TCGCCGGCGC 0.758566 -22 AGTTCTGCTGGCACCTGCGCCCGCATTCCA 18 55 1 GCACCTGCGC 0.927279 -49 CAGGCCACCGTCGCCTGGACGATGATCGGC 20 152 0 TCGCCTGGAC 0.737782 -149 TTCATGGCGTGCACCAGCACTGTAGCTTAG 21 83 0 GCACCAGCAC 0.846308 -142 CAGCGGGCGATCGCAAGCGCGGCGAAGCCG 28 70 0 TCGCAAGCGC 0.822082 -95 CTAGCGGCGATCGCAAGCGCGGCGAAGCCG 28 127 0 TCGCAAGCGC 0.822082 -38 CGGCCGACCTGCCCCAGATCCGGAGAGCCC 29 153 0 GCCCCAGATC 0.364867 -148 GAACCCCACTTCACCAGGACAACAAGCTGC 30 109 0 TCACCAGGAC 0.810361 -22 GATCCCAGGTTCACCAGGTCTCACCAGATC 33 110 1 TCACCAGGTC 0.910888 -191 TCACCAGGTCTCACCAGATCCACGGGGCGC 33 120 1 TCACCAGATC 0.770121 -181 GGCATCGGCATCGCCAGGTCGACGGACGTG 33 162 1 TCGCCAGGTC 0.933413 -139 TCATCGACGAGCACCCGCTCCCCGGCGAGC 36 23 1 GCACCCGCTC 0.59636 -42 CAGCACATCTTCACCTGCGAAACATGTTCT 39 92 0 TCACCTGCGA 0.637697 -100 CCGAGCGACATCACCTGGTCGCTACGCATC 44 214 0 TCACCTGGTC 0.830715 -38 CCTGTGAACTCCCCCAGGGCTGGAAGGCAG 46 97 1 CCCCCAGGGC 0.606809 -204 TCAGCGCGGGTCGCCTGCACCGCCCCGCTC 47 190 1 TCGCCTGCAC 0.892024 -111 GTGCTGTCGCTCGCCTGCGGGAACAGCAGT 49 20 1 TCGCCTGCGG 0.666215 -74 ********** Masking position 7 Map Score: 22.9893 Number of sites scoring better than the average of aligned sites = 8177 Number in coding regions = 7656 Number in noncoding regions = 521 Number of orfs with sites within 600 bp upstream = 405 Fraction of orfs with sites within 600 bp upstream = 0.0650498 Motif number 12 AGTCCCCACGCTAGCGGGGCGCTAGCCACGGGA 1 249 1 CAGGGGCGCT 0.939048 -52 TGTATTTACACAACGAGGGCGCTCCCCGATCTG 2 160 1 CACGGGCGCT 0.91362 -122 AACCATCCCCGGATATCGGCGCTAGCTGGCGAT 12 17 0 GATCGGCGCT 0.864434 -284 CGCTGACGTGGAATGCGGGCGCAGGTGCCAGCA 18 60 0 GATGGGCGCA 0.881277 -44 ATCCGGGCGGTTTCGGGCGCTTTCATGCCGG 24 9 1 GTTGGGCGCT 0.97064 -79 AAATCCGACCGGATTTGGGAGCTTTTGCGTCTT 25 21 0 GATGGGAGCT 0.925389 -69 AAATCCGGTCGGATTTGGGAGCTTTTGCGTCTG 25 38 1 GATGGGAGCT 0.925389 -52 GCCAAACAAACCCAGCGGGCGATCGCAAGCGCG 28 79 0 CCAGGGCGAT 0.658118 -86 TTTTCGTCATGAAAATGGGCGATTTTGCGTCTG 34 29 0 GAAGGGCGAT 0.950448 -68 ATTTTCATGACGAAAAGGGCGATTTTGCGTCTG 34 46 1 CAAGGGCGAT 0.859018 -51 CTCGGACCCTGTATCGGGGAGATCCCGGT 38 7 0 GATGGGAGAT 0.88523 -230 CCGGGCAGTTTACGGGCGATCGCAAGCTCG 44 8 1 GTTGGGCGAT 0.953616 -244 GCCCGCGTTGGATTCAGGGCGATCGCAAGCTCG 44 67 1 GTTGGGCGAT 0.953616 -185 GCCCGCGTTGGATTCAGGGCGATCGCAAGCTCG 44 126 1 GTTGGGCGAT 0.953616 -126 CGTAAAACCCGGACGCGGGCGACCCGCCGCACC 44 172 0 GACGGGCGAC 0.724204 -80 GTTGGGCGAGGGAGCGGGGCGGTGCAGGCGACC 47 198 0 GAGGGGCGGT 0.875727 -103 AGTCCTGGCCGACGATGGGCGCTCAGACGGCGA 47 236 1 GCGGGGCGCT 0.938734 -65 * ** ******* Masking position 8 Map Score: 19.2819 Number of sites scoring better than the average of aligned sites = 837 Number in coding regions = 745 Number in noncoding regions = 92 Number of orfs with sites within 600 bp upstream = 81 Fraction of orfs with sites within 600 bp upstream = 0.01301 Motif number 13 GGCGGGTCACGCGTCATGGGCATTCGTCGTT 1 215 1 GCGTCATGGC 0.296825 -86 TCATGGGCATTCGTCGTTGGCAGTCCCCACG 1 228 1 TCGTCGTGGC 0.889146 -73 TCCGCCGTGTGCTCCGGATGAG 2 2 1 CCGCCGTTGC 0.716114 -280 ACAAACCGCACCGGCCTGAGCATCAAGGAGT 2 236 0 CCGGCCTAGC 0.582832 -46 CTCTAGAAGACCGCCGTCAGCTGCGCC 6 7 0 CCGCCGTAGC 0.864384 -65 CTTAGCCTATCCGCTGGCGGCCCGGAACCGA 9 115 0 CCGCTGGGGC 0.876085 -26 CTTTTGGCCACCGGCGCTGGTGGCCTACTGC 10 57 1 CCGGCGCGGT 0.744315 -78 GATAATTTTGTCGGTTTCGGCCGGCGAACGA 12 206 0 TCGGTTTGGC 0.590847 -95 GGGGACCATGCCGGCGTTGCCTGCCGGTTAG 14 18 1 CCGGCGTGCC 0.954196 -210 CGGGATCTGTGCGACGTTGGCGGCAATCAGC 14 83 0 GCGACGTGGC 0.542464 -145 GCTCCTGATGGCGGCGTGGGGTGATGGACAC 14 199 0 GCGGCGTGGG 0.668345 -29 ACGGCCCGCTTCGTCGCCGGCGCTAGTCTCA 16 24 1 TCGTCGCGGC 0.622557 -25 GCATTCCACGTCAGCGTCGGTGCATAAAGTG 18 77 1 TCAGCGTGGT 0.201494 -27 CTCGCGATAGCCGCTGTGAGCCCATGGCAAG 20 115 0 CCGCTGTAGC 0.551855 -186 GCCGCTCAGGCCACCGTCGCCTGGACGATGA 20 157 0 CCACCGTGCC 0.511188 -144 CATGGTCATGCCGCTGTTGGCCGGTGCGTAC 21 184 0 CCGCTGTGGC 0.946576 -41 CCGGTTTGGGCATACATCTTG 23 1 1 CCGGTTTGGC 0.900323 -42 TGACGCTACTCCGGGGTGCGCGAGCAGACGC 25 64 0 CCGGGGTCGC 0.600049 -26 TGCCCGTGGGTTGGCTTTGGCGCGCGCGCAC 26 45 1 TTGGCTTGGC 0.157138 -37 CTCGCTGTGCCCGGCTTCGCCGCGCTTGCGA 28 59 1 CCGGCTTGCC 0.827037 -106 GATGAACTTCCCGGCATCGGCATCGCCAGGT 33 150 1 CCGGCATGGC 0.92855 -151 CGCGGCCCTGTCGGTGGCGGCGCGAGCAGAC 34 74 0 TCGGTGGGGC 0.715141 -23 GTCACTGTAGCCGCCGTCGGTCAGCCCCGCA 35 13 0 CCGCCGTGGT 0.864384 -92 CCGTCTCGCGCGGGCGGCGGCCACCTCGGAC 38 33 0 CGGGCGGGGC 0.750288 -204 CGGCGTTGTCCGTCTTCGGCTCGATATCGC 40 10 1 CCGTCTTGGC 0.920097 -58 GAAATCGGTTCCGTCGTAGGCGATATCGAGC 40 29 0 CCGTCGTGGC 0.980457 -39 GCGCTTGTCGCCGGGTGCGGCGGGTCGCCCG 44 41 1 CCGGGTGGGC 0.771197 -211 GCGCTTGTCGCCGGGTGCGGCGGGTCGCCCG 44 100 1 CCGGGTGGGC 0.771197 -152 GCGCTTGTCGCCGGGTGCGGCGGGTCGCCCG 44 159 1 CCGGGTGGGC 0.771197 -93 CCCGCTGAGTCCGTCCCGGGCGTTCCAGCCC 46 28 1 CCGTCCCGGC 0.504499 -273 GAGTCGAACGACACCGTGGGCCCTTTCGCCG 46 213 0 ACACCGTGGC 0.253388 -88 GTCGCATTGGCCGGTGTCGGGACGAGGTATC 47 12 1 CCGGTGTGGG 0.746991 -289 GTCTGAGCGCCCATCGTCGGCCAGGACTTAT 47 233 0 CCATCGTGGC 0.848337 -68 ACAACGAACGCCAGCGTAGGCACTGCTGTTC 49 40 0 CCAGCGTGGC 0.957823 -54 ******* *** Masking position 2 Map Score: 33.7435 Number of sites scoring better than the average of aligned sites = 21910 Number in coding regions = 20852 Number in noncoding regions = 1058 Number of orfs with sites within 600 bp upstream = 656 Fraction of orfs with sites within 600 bp upstream = 0.105365 Motif number 14 ACCTCTGACCCACCGCGACGAGCCAGTTATGCG 1 113 0 CACCGGACGC 0.760607 -188 GGATCGAACTCATCGTGAGGTGAAAGGGCGCA 1 279 1 CATCGGAGGA 0.921944 -22 GAGTCCAGTTCACCTCGAATGGATAGTGCGCAC 2 207 0 CACCTGAAGA 0.761028 -75 GCCAGCGTGCGGCGACAGATACGCT 7 3 1 CAGCGGCGGA 0.872538 -29 TCCCGCGTGGCGGCGTGAGGAGAAGCC 8 64 1 CGGCGGAGGA 0.931607 -17 AGTCACCTTCCACGCCGAGCAGACGAGGAATCG 9 60 0 CACGCGAGGA 0.758746 -81 CCACCGCGAAAAGACGCAAAAGCT 25 2 1 CACCGGAAGA 0.979736 -88 GGCGCGCGCGCACCGCGAAAGGAACAACG 26 63 1 CACCGGAAGA 0.979736 -19 CGAAGCCGGGCACAGCGAGTCGACGGGAATACA 28 45 0 CACAGGAGGA 0.954186 -120 TAGGGGGTGGCACGGAGAAGAGATACAAGATGT 33 38 0 CACGGGAAGA 0.912213 -263 CTGTCGGTGGCGGCGCGAGCAGACGCAAAATCG 34 65 0 CGGCGGAGGA 0.931607 -32 TTTGGGGGCTCACAGGGATCCGAGCGGGCTACT 35 65 0 CACAGGATGA 0.67125 -40 CGCCGGACCGCACCGGAAGCAGAAGGCCCAAAC 39 54 1 CACCGAAGGA 0.901233 -138 GCGCGGGGTCCACCGTGAGTCTAATACCTGGGC 46 55 0 CACCGGAGTA 0.901233 -246 ***** *** ** Masking position 1 Map Score: 7.82052 Number of sites scoring better than the average of aligned sites = 436 Number in coding regions = 349 Number in noncoding regions = 87 Number of orfs with sites within 600 bp upstream = 44 Fraction of orfs with sites within 600 bp upstream = 0.00706714 Motif number 15 TAGCGTGGGGACTGCCAACGACGAATGCCC 1 232 0 ACTGCCAACG 0.848692 -69 CAGATCGGGGAGCGCCCTCGTTGTGTAAAT 2 163 0 AGCGCCCTCG 0.819822 -119 GGTGGCCAAAAGTCCCCTCGGGACCCGCTG 10 39 0 AGTCCCCTCG 0.837982 -96 CTGGTGGCCTACTGCCCTCCCGCCGTTGCG 10 73 1 ACTGCCCTCC 0.502412 -62 TTAGAGGAGCGGTGCCCACGGGCCCGTTCG 12 241 0 GGTGCCCACG 0.792675 -60 CGCTCCTCTAAGGGCTCTCGTTGGTCGCAT 12 260 1 AGGGCTCTCG 0.71705 -41 CAGGCCGGAACGCCCCTCACA 15 3 0 ACGCCCCTCA 0.394466 -19 CCGAACGGTGTCGGTCCTCGGTCATAGACT 17 39 1 TCGGTCCTCG 0.448237 -29 AACGACGTTTGGTGCCATCGCGGATAGCAG 20 16 1 GGTGCCATCG 0.719018 -285 GCAAGGCAGGACGGCCCTCG 21 215 1 ACGGCCCTCG 0.981903 -10 ACTCGCTGGAACGGCACACGCGGTTCTGCG 29 61 0 ACGGCACACG 0.639328 -240 GAATGCGGCTACGGCCATCGATCGAAGCGG 29 180 0 ACGGCCATCG 0.962118 -121 TAATCCAGAGAGGCCGCACGGACGTC 29 285 1 AGGCCGCACG 0.680136 -16 CGAGCCGAAGACGGACAACGCCG 40 4 0 ACGGACAACG 0.426367 -64 CGTTGGATTCAGGGCGATCGCAAGCTCGGC 44 72 1 AGGGCGATCG 0.824963 -180 CGTTGGATTCAGGGCGATCGCAAGCTCGGC 44 131 1 AGGGCGATCG 0.824963 -121 GAAGGCAGCAAGGGTCAACGGGCTCTGTCG 46 119 1 AGGGTCAACG 0.567223 -182 ACTCGGCGAAAGGGCCCACGGTGTCGTTCG 46 210 1 AGGGCCCACG 0.974327 -91 CCCCGCTCCCTCGCCCAACGAATAAGTCCT 47 212 1 TCGCCCAACG 0.521187 -89 CGCCGTCTGAGCGCCCATCGTCGGCCAGGA 47 238 0 GCGCCCATCG 0.709889 -63 CGGGAACAGCAGTGCCTACGCTGGCGTTCG 49 37 1 AGTGCCTACG 0.441104 -57 TGTCTCAAGATCTGCCCTCGCACTCGAAAG 49 68 1 TCTGCCCTCG 0.776616 -26 ********** Masking position 9 Map Score: 15.5029 Number of sites scoring better than the average of aligned sites = 4432 Number in coding regions = 4069 Number in noncoding regions = 363 Number of orfs with sites within 600 bp upstream = 288 Fraction of orfs with sites within 600 bp upstream = 0.0462576