AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00251_mtub_reg_100.orf -o00251_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 gabD2 25 gabD2 #2 Rv0235c 34 hypothetical protein Rv0235c #3 Rv0236c 300 hypothetical protein Rv0236c #4 aspC 30 aspC #5 Rv0338c 108 hypothetical protein Rv0338c #6 Rv0807 300 hypothetical protein Rv0807 #7 purF 86 purF #8 Rv0858c 156 hypothetical protein Rv0858c #9 fdxC 212 fdxC #10 Rv1178 32 hypothetical protein Rv1178 #11 rocA 84 rocA #12 Rv1335 21 hypothetical protein Rv1335 #13 gabD1 300 gabD1 #14 bfrA 300 bfrA #15 Rv1877 84 hypothetical protein Rv1877 #16 glnA3 54 glnA3 #17 glnA1 300 glnA1 #18 glnA2 94 glnA2 #19 Rv2223c 61 hypothetical protein Rv2223c #20 Rv2224c 300 hypothetical protein Rv2224c #21 gabT 166 gabT #22 PE_PGRS 206 PE_PGRS #23 Rv2854 36 hypothetical protein Rv2854 #24 glnA4 159 glnA4 #25 Rv2993c 275 hypothetical protein Rv2993c #26 lat 50 lat #27 Rv3291c 30 hypothetical protein Rv3291c #28 phyA 28 phyA #29 idsA 22 idsA #30 gadB 37 gadB #31 Rv3435c 221 hypothetical protein Rv3435c #32 glmS 21 glmS #33 fadD3 47 fadD3 #34 gltB 300 gltB Motif number 1 ********** No masking Map Score: -1.26737e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 2 AGAAGCGTGGGCCTGGCCCCCCAACC 3 7 0 GCCTGGCCCC 0.97583 -294 CATCGGTGGCTCCTCGACGGCTGTGGGTGC 3 64 0 TCCTCGACGG 0.761146 -237 CACCACGCTTGCGGCGGCGGGCGCGACGAT 3 100 0 GCGGCGGCGG 0.513391 -201 CTGTTGCTGGGCGCGGCCGCGATCTTCGGA 3 136 1 GCGCGGCCGC 0.928806 -165 CGCGATCTTCGGAGTGACCCTGATGGTGCA 3 153 1 GGAGTGACCC 0.502358 -148 TCGCCCCCGGGGAGTGGCGGTTTCTTGTCC 3 186 0 GGAGTGGCGG 0.905479 -115 TGATGACGACGGATCGCCCCCGGGGAGTGG 3 199 0 GGATCGCCCC 0.918064 -102 GCCTCAGCCTGCGGCGCCCGGGTCGCGGGG 3 265 0 GCGGCGCCCG 0.517779 -36 CTGCGACCCGGAGGCCGCCTCAGCCTGC 3 283 0 CGGAGGCCGC 0.592621 -18 CACAGATCGCGGGTCGGCGCAGGTTGACCG 6 61 1 GGGTCGGCGC 0.528515 -240 CAGGTTGACCGCGCTGGCGCGGGGTCCATA 6 80 1 GCGCTGGCGC 0.896122 -221 AAGAGTTATCGCCTTGACCGCACAATTCTG 6 110 0 GCCTTGACCG 0.896986 -191 ACTTGACATGGCGCGGCCGCAACAACCAGG 6 182 0 GCGCGGCCGC 0.928806 -119 CCCAGTCTCAGCAGCGGCGCTTGGCCGCCA 6 245 1 GCAGCGGCGC 0.84886 -56 TGGTGTGTGAGGGTGGCGCCGGGGTGCCCG 7 35 1 GGGTGGCGCC 0.59475 -52 GGGTGGCGCCGGGGTGCCCGACACGTAAGC 7 45 1 GGGGTGCCCG 0.955241 -42 GACGTCTGCACCGCCGAATTCGGCTTA 7 70 0 GCACCGCCGA 0.85177 -17 AACAGGTTGGCCGGGGGCCCTGTTAGGGTG 8 82 0 CCGGGGGCCC 0.696608 -75 CGGGCGACGATGCGCGCCGCAGCGATACCT 8 121 0 TGCGCGCCGC 0.649034 -36 GCGGCGCGCATCGTCGCCCGGATAGGCTCG 8 131 1 TCGTCGCCCG 0.703356 -26 CGCCCGGATAGGCTCGACCGCC 8 145 1 GGCTCGACCG 0.860963 -12 CATTGCCTCAGCAGGGCCCGGAGGAAGCCT 9 132 1 GCAGGGCCCG 0.963027 -81 CCCGGAGGAAGCCTTGGCGAGGTGGACAGC 9 148 1 GCCTTGGCGA 0.848716 -65 GCCGGCTGGGGGCAGCACCCGCT 10 4 1 GGCTGGGGGC 0.585619 -29 GGGCAGCACCCGCTCGCGGCGGA 10 20 1 CGCTCGCGGC 0.350736 -13 CATTTGCGATGCCTGGGCGGGGATGCTGGC 11 61 1 GCCTGGGCGG 0.984996 -24 CATGAACATCGCGAGGCCGGTTCTTCGTGG 13 15 1 GCGAGGCCGG 0.947957 -286 GGATCCCAAGGGACTGCCGGAAGCGAATTT 13 55 1 GGACTGCCGG 0.944629 -246 CGAATCTCTCGCGACGCCCCAAGCGGCGCA 13 88 0 GCGACGCCCC 0.767983 -213 TCCAGCCAGGGGATTGCCGAATCTCTCGCG 13 105 0 GGATTGCCGA 0.749209 -196 CAGGGCGTAGGCGCTGCGGCGTGCACGGCT 13 149 1 GCGCTGCGGC 0.622441 -152 CGGCGTGCACGGCTTGGCCCCACAACCCGT 13 165 1 GGCTTGGCCC 0.894304 -136 GCATTCTCGACGAATGCCGGGTTCTTCTTG 13 211 0 CGAATGCCGG 0.426546 -90 AGCAGATGCTGCGTCGGCGAACGATCAAGC 14 26 1 GCGTCGGCGA 0.587322 -275 CTTGGACTTTGCGCCGGCGAGACGCGCCGA 14 118 1 GCGCCGGCGA 0.511936 -183 GTTTGTTGCGGCGTCGGCGCGTCTCGCCGG 14 131 0 GCGTCGGCGC 0.515866 -170 CAGCGAGTACGGGTCGGCGCAGGGTTTGTT 14 154 0 GGGTCGGCGC 0.528515 -147 ACAGCACGTTTGCGTGCCGCGTCTCAATCT 14 188 0 TGCGTGCCGC 0.795817 -113 GTGCGCTCCAGCCCTGCCCACCTGGCGCGG 14 245 1 GCCCTGCCCA 0.831606 -56 GAGCTTGTCAGCGGCGCCCGGAGTGGTATC 15 31 0 GCGGCGCCCG 0.517779 -54 GAACAGCGATGGGAGGGCGGAT 15 73 1 GGGAGGGCGG 0.85018 -12 CGATGCTTGCCGCGCGTAGCCGC 16 4 1 TGCTTGCCGC 0.813643 -51 TGCTTGCCGCGCGTAGCCGCGCGAGCTGAT 16 14 1 GCGTAGCCGC 0.606853 -41 TGGCTCCGATGGGGCGCCGGCTGGCGGCTC 17 13 0 GGGGCGCCGG 0.522864 -288 CAAGACGCTGGGCTTGCCGGACACCGGACC 17 51 0 GGCTTGCCGG 0.984319 -250 CAAGCCCAGCGTCTTGCCGGGATAGTCGGG 17 65 1 GTCTTGCCGG 0.840408 -236 GACGGCGAAATCGCCGCCCGACTATCCCGG 17 81 0 TCGCCGCCCG 0.586126 -220 CGTAACCGGTGGCATGCCGAACGGGAACCT 17 131 0 GGCATGCCGA 0.538389 -170 ATCTTGCCGACCATGGCCCCACAATAGGGC 17 161 1 CCATGGCCCC 0.775077 -140 ACGCCGGGTCTCCCCGGCCCTATTGTGGGG 17 177 0 TCCCCGGCCC 0.579505 -124 CCGGCGTCAGTGGTGGGCGGCACGGTCAGT 17 200 1 TGGTGGGCGG 0.83897 -101 CGGCTCCATAGCGTCGGCCGCGGATACAGT 17 268 1 GCGTCGGCCG 0.611117 -33 GCCCGCAAGGGGAGTGCGCGGTGAGT 18 7 0 GGAGTGCGCG 0.407155 -88 CTCCCCTTGCGGGCCGCCCCGCAACGCTTC 18 23 1 GGGCCGCCCC 0.506621 -72 TGTTACCGATGCCCGGCCAGAAGCGTTGCG 18 42 0 GCCCGGCCAG 0.685398 -53 TTCGTCGAAGGGGTGGACGGCATCGGGGAT 20 17 1 GGGTGGACGG 0.932649 -284 TGCACCTTGGCCATCGCCCGAGGGCGATCC 20 43 0 CCATCGCCCG 0.8825 -258 CACCATGCCGGCGTGGACGGGGTGCCAGCG 20 71 1 GCGTGGACGG 0.950484 -230 GGGCGCGTCGGCCTCGGCGGTGCACAACTG 20 115 0 GCCTCGGCGG 0.882007 -186 GGCCGACGCGCCCGTGCCGGATCCGGTCGA 20 132 1 CCCGTGCCGG 0.947018 -169 GTGCCGGATCCGGTCGACGGGTCGGTGTCT 20 145 1 CGGTCGACGG 0.486568 -156 ACGGGTCGGTGTCTTGCCCGGATCTGTTAC 20 161 1 GTCTTGCCCG 0.744028 -140 GACGTATGGGGGATGGCCGACGAGTTCGCC 20 193 1 GGATGGCCGA 0.820836 -108 AGCAGTCCTGCCATCGCCGATGGCGAACTC 20 214 0 CCATCGCCGA 0.646559 -87 AGGACTGCTGGCAGCGGCCGGTTAGTCGGC 20 235 1 GCAGCGGCCG 0.920633 -66 CCAGCGGCCACCGTCGGCCGACTAACCGGC 20 251 0 CCGTCGGCCG 0.532909 -50 GTTACCAGGTGCGCGGCCCGCGGGTAGGCC 21 50 0 GCGCGGCCCG 0.972581 -117 CGGCCTGCCAGACTGGACGGGCACACTGGA 21 82 0 GACTGGACGG 0.651168 -85 CGTCCAGTCTGGCAGGCCGGAAACATCGGT 21 93 1 GGCAGGCCGG 0.932682 -74 CTCCTCACCCGGCTCGCCGGTTCACATCGC 21 142 0 GGCTCGCCGG 0.914883 -25 GGATAACCTGGGAGCGGCGCAGCCAAGGAA 22 26 0 GGAGCGGCGC 0.854491 -181 GACGTCCGCCTCCTGGGCCAGTAACCCTGT 22 75 1 TCCTGGGCCA 0.384093 -132 GTAACCCTGTGCAGCGCGGGGCAGCCAACC 22 95 1 GCAGCGCGGG 0.749763 -112 CAATGTGCGTCCCTGGCCGCCATAGAATCC 22 148 1 CCCTGGCCGC 0.942499 -59 AGAAGAACCGGACTGGGCGGATAGTGCGGA 22 175 0 GACTGGGCGG 0.837026 -32 CGAAAGAACATGATGGGCGCTGGTGCCCAT 24 35 0 TGATGGGCGC 0.53046 -125 CTTTCGCGTCTACTCGCCGGCTCCGGCGGT 24 59 1 TACTCGCCGG 0.638451 -101 CGGGCACCGCGAACCGCCGGAGCCGGCGAG 24 71 0 GAACCGCCGG 0.78365 -89 CCGGCGGTTCGCGGTGCCCGCGACAGCCAG 24 81 1 GCGGTGCCCG 0.958228 -79 ATCTATAGGCTCCGGGCCCACATGCTGGCT 24 105 0 TCCGGGCCCA 0.547459 -55 TCCTCCCACACCATGGCCGCTAGTCAACCA 24 134 0 CCATGGCCGC 0.861901 -26 ACCATCGGGCCCCGTGCCGGGTGACTGTGC 25 23 0 CCCGTGCCGG 0.947018 -253 GTGAGGGCCCGCAGCGCCCGGCAGGGTCTG 25 51 1 GCAGCGCCCG 0.950286 -225 CGGCAGGGTCTGATTGCCGGGCTCCTCATC 25 69 1 TGATTGCCGG 0.752238 -207 TCCTCATCGGGCCGTGCCGGCCCGAATCGT 25 91 1 GCCGTGCCGG 0.986597 -185 CCGGCCCGAATCGTCGCCCGGCAGGGTCTG 25 107 1 TCGTCGCCCG 0.703356 -169 CGGCAGGGTCTGATTGCCGGGCTCCTCATC 25 125 1 TGATTGCCGG 0.752238 -151 TCCTCATCGGGCCGTGCCGGCCCGAATCGT 25 147 1 GCCGTGCCGG 0.986597 -129 GCTTAGCCGGGCCCTGCCGGGCGACGATTC 25 170 0 GCCCTGCCGG 0.98502 -106 CGAATCGCCAGCCCGGACGGTGTCGCTTTT 25 220 1 GCCCGGACGG 0.946191 -56 GCTTTTGCCAGCATCGACGGCGAGCTGGGC 25 244 1 GCATCGACGG 0.909491 -32 CTCACTCGGCTCGCCCAGCTCGCCGTC 25 259 0 GGCTCGCCCA 0.863738 -17 TATCGCAACGGCAGTGCCGC 27 1 0 GCAGTGCCGC 0.941564 -30 CACGGTACGGGACCTGGCGGCCCAAGACAC 31 22 1 GACCTGGCGG 0.711774 -200 CGCGATCCACGTGGCGACCGCGGAGACGTT 31 56 1 GTGGCGACCG 0.361688 -166 GTTGGGTGCGGAGTTGACGGCGATGATCAC 31 83 1 GAGTTGACGG 0.519101 -139 ACAATCACGTGGCCTGGCGGTGGCATCCGC 31 140 1 GGCCTGGCGG 0.95541 -82 GCGGTGGCATCCGCTGACGGAGGGGTCCCG 31 156 1 CCGCTGACGG 0.681505 -66 AAATTGTAACCGCGGGACCCCTCCGTCAGC 31 168 0 CGCGGGACCC 0.486225 -54 GGTTACAATTTCCGGGCCGGAACGCACAAG 31 187 1 TCCGGGCCGG 0.943994 -35 CGTAGCTGCCGCGTGGCCAGCAACCGACCG 34 24 0 GCGTGGCCAG 0.723602 -277 GGCAGCTACGGTGCCGCCGGCTGACGAGTT 34 44 1 GTGCCGCCGG 0.763976 -257 CAGCAGTGAACGCTTGGCCCTGGAATCGGA 34 134 0 CGCTTGGCCC 0.656586 -167 GTTCACTGCTGCACGGACGAAGCCCCGACC 34 153 1 GCACGGACGA 0.457174 -148 CACGGACGAAGCCCCGACCGGATCACGCCC 34 164 1 GCCCCGACCG 0.738202 -137 GGATCACGCCCGCTTGACGGACAGCCTATC 34 183 1 CGCTTGACGG 0.705831 -118 GACCGAAGGGGTCTTGCCCGCTACCTCCGG 34 218 1 GTCTTGCCCG 0.744028 -83 TTGCGGATTCGACGGGGCCGCACCCGGAGG 34 241 0 GACGGGGCCG 0.717604 -60 CAGACTTTCTGCGCGGCCGCCTTTGCGGAT 34 263 0 GCGCGGCCGC 0.928806 -38 ********** Masking position 6 Map Score: 170.55 Number of sites scoring better than the average of aligned sites = 90325 Number in coding regions = 84590 Number in noncoding regions = 5735 Number of orfs with sites within 600 bp upstream = 1598 Fraction of orfs with sites within 600 bp upstream = 0.256666 Motif number 3 TTAGCAGAAGCGTGGGCCTGGCCCCCCAAC 3 12 0 CGTGGGCCTG 0.764353 -289 ACCACGCTTGCGGCGGCGGGCGCGACGATC 3 99 0 CGGCGGCGGG 0.994052 -202 TGTTGCTGGGCGCGGCCGCGATCTTCGGAG 3 137 1 CGCGGCCGCG 0.485 -164 TGTCCTGCTGCACCATCAGGGTCACTCCGA 3 161 0 CACCATCAGG 0.281191 -140 GACGACGGATCGCCCCCGGGGAGTGGCGGT 3 195 0 CGCCCCCGGG 0.961987 -106 GGTTACCGTACTCGACCCGGTTGAGCACTG 3 227 0 CTCGACCCGG 0.363633 -74 CCTCAGCCTGCGGCGCCCGGGTCGCGGGGC 3 264 0 CGGCGCCCGG 0.985257 -37 CCGGAGGCCGCCTCAGCCTGCGGCGCCCGG 3 274 0 CCTCAGCCTG 0.72094 -27 CAGGCTGAGGCGGCCTCCGGGTCGCAG 3 284 1 CGGCCTCCGG 0.943769 -17 ATGGACCCCGCGCCAGCGCGGTCAACCTGC 6 79 0 CGCCAGCGCG 0.825749 -222 GATCTAAGAACATCGGCCGGAAACCTGGTT 6 159 1 CATCGGCCGG 0.850549 -142 GTTGTTGCGGCCGCGCCATGTCAAGTTCAG 6 186 1 CCGCGCCATG 0.749468 -115 GGCGCTTGGCCGCCATCTGGATGGATCCAC 6 260 1 CGCCATCTGG 0.802956 -41 TGTGTGAGGGTGGCGCCGGGGTGCCCGACA 7 38 1 TGGCGCCGGG 0.74498 -49 AATTCGGCTTACGTGTCGGGCACCCCGGCG 7 51 0 ACGTGTCGGG 0.373752 -36 CGGCGCGCATCGTCGCCCGGATAGGCTCGA 8 132 1 CGTCGCCCGG 0.985592 -25 AAGGCTTCCTCCGGGCCCTGCTGAGGCAAT 9 133 0 CCGGGCCCTG 0.494242 -80 CCACACATAGCGGTATCTGGAAGACATGTT 9 181 1 CGGTATCTGG 0.473261 -32 CGGGTGCTGCCCCCAGCCGGC 10 2 0 CCCCAGCCGG 0.959434 -31 TCCGCCGCGAGCGGGTGCTGCCCCC 10 18 0 CGCGAGCGGG 0.787241 -15 ATTTGCGATGCCTGGGCGGGGATGCTGGCA 11 62 1 CCTGGGCGGG 0.632928 -23 CACGAAGAACCGGCCTCGCGATGTTCATGT 13 14 0 CGGCCTCGCG 0.615028 -287 CTTCGTGGTAACGTGCCGGGATCCCAAGGG 13 37 1 ACGTGCCGGG 0.553606 -264 TTCGGCAATCCCCTGGCTGGAGGATCCCGT 13 114 1 CCCTGGCTGG 0.657394 -187 GGCGTAGGCGCTGCGGCGTGCACGGCTTGG 13 152 1 CTGCGGCGTG 0.51452 -149 TAACAATGACCCGCGGCTTGGACTTTGCGC 14 102 1 CCGCGGCTTG 0.701973 -199 TTGGACTTTGCGCCGGCGAGACGCGCCGAC 14 119 1 CGCCGGCGAG 0.689497 -182 TTTGTTGCGGCGTCGGCGCGTCTCGCCGGC 14 130 0 CGTCGGCGCG 0.86049 -171 GAGTACGGGTCGGCGCAGGGTTTGTTGCGG 14 150 0 CGGCGCAGGG 0.728988 -151 TGGAGCGCACCGGTGTCGGGCTCGTCTTGG 14 225 0 CGGTGTCGGG 0.936297 -76 TCGTGGCGAACCGCGCCAGGTGGGCAGGGC 14 255 0 CCGCGCCAGG 0.913494 -46 AGCTTGTCAGCGGCGCCCGGAGTGGTATCG 15 30 0 CGGCGCCCGG 0.985257 -55 CAGAGCCGCCAGCCGGCGCCCCATCG 17 7 1 CGCCAGCCGG 0.980471 -294 CCAGCCGGCGCCCCATCGGAGCCAGCGAAC 17 19 1 CCCCATCGGA 0.569645 -282 TTGCCGGACACCGGACCGGGTTCGCTGGCT 17 38 0 CCGGACCGGG 0.503064 -263 ACGGCGAAATCGCCGCCCGACTATCCCGGC 17 80 0 CGCCGCCCGA 0.894271 -221 GCGATTTCGCCGTCATCGGGCAGACCCGAT 17 97 1 CGTCATCGGG 0.947399 -204 AGATCGTAACCGGTGGCATGCCGAACGGGA 17 135 0 CGGTGGCATG 0.390302 -166 TTTACTGTATCCGCGGCCGACGCTATGGAG 17 271 0 CCGCGGCCGA 0.875949 -30 AAGGGGTGGACGGCATCGGGGATCGCCCTC 20 24 1 CGGCATCGGG 0.978069 -277 CATCGGGGATCGCCCTCGGGCGATGGCCAA 20 37 1 CGCCCTCGGG 0.935077 -264 ACCCCGTCCACGCCGGCATGGTGCACCTTG 20 64 0 CGCCGGCATG 0.743847 -237 CCGAGGCCGACGCGCCCGTGCCGGATCCGG 20 128 1 CGCGCCCGTG 0.500066 -173 CGCGCCCGTGCCGGATCCGGTCGACGGGTC 20 138 1 CCGGATCCGG 0.495761 -163 GGACTGCTGGCAGCGGCCGGTTAGTCGGCC 20 236 1 CAGCGGCCGG 0.934599 -65 CAGCGGCCACCGTCGGCCGACTAACCGGCC 20 250 0 CGTCGGCCGA 0.800754 -51 ATTGCGATCACGGTGCCAGGCCTACCCGCG 21 32 1 CGGTGCCAGG 0.82727 -135 AGATCCTCCTCACCCGGCTCGCCGGTT 21 150 0 CCTCACCCGG 0.945223 -17 TTGGCTGCGCCGCTCCCAGGTTATCCCGAC 22 30 1 CGCTCCCAGG 0.400815 -177 TCGTGTTAACACCCGTCGGGATAACCTGGG 22 44 0 ACCCGTCGGG 0.730274 -163 AGGAGGCGGACGTCATCGTGTTAACACCCG 22 59 0 CGTCATCGTG 0.712064 -148 ACGATGACGTCCGCCTCCTGGGCCAGTAAC 22 70 1 CCGCCTCCTG 0.617577 -137 GCACTATCCGCCCAGTCCGGTTCTTCTTGG 22 178 1 CCCAGTCCGG 0.433509 -29 CCGCGAACCGCCGGAGCCGGCGAGTAGACG 24 65 0 CCGGAGCCGG 0.532661 -95 CCATCGGGCCCCGTGCCGGGTGACTGTGCC 25 22 0 CCGTGCCGGG 0.749969 -254 TGCGGGCCCTCACCATCGGGCCCCGTGCCG 25 34 0 CACCATCGGG 0.735787 -242 GGCAATCAGACCCTGCCGGGCGCTGCGGGC 25 57 0 CCCTGCCGGG 0.71993 -219 TTGCCGGGCTCCTCATCGGGCCGTGCCGGC 25 82 1 CCTCATCGGG 0.920776 -194 CGGCCCGAATCGTCGCCCGGCAGGGTCTGA 25 108 1 CGTCGCCCGG 0.985592 -168 TTGCCGGGCTCCTCATCGGGCCGTGCCGGC 25 138 1 CCTCATCGGG 0.920776 -138 CGGCCCGAATCGTCGCCCGGCAGGGCCCGG 25 164 1 CGTCGCCCGG 0.985592 -112 ATGAGCTTAGCCGGGCCCTGCCGGGCGACG 25 174 0 CCGGGCCCTG 0.494242 -102 GCAAAAGCGACACCGTCCGGGCTGGCGATT 25 222 0 CACCGTCCGG 0.845147 -54 GCTCACGGTACGGGACCTGGCGGCCCAAGA 31 19 1 CGGGACCTGG 0.804942 -203 CGCACAATCACGTGGCCTGGCGGTGGCATC 31 137 1 CGTGGCCTGG 0.798133 -85 GGGACCCCTCCGTCAGCGGATGCCACCGCC 31 155 0 CGTCAGCGGA 0.661909 -67 GTTACAATTTCCGGGCCGGAACGCACAAGT 31 188 1 CCGGGCCGGA 0.607233 -34 GGAACGCACAAGTGGGCGGGTAGCGAG 31 205 1 AGTGGGCGGG 0.594503 -17 AATACTAACTCGTCAGCCGGCGGCACCGTA 34 50 0 CGTCAGCCGG 0.965732 -251 GTCAAGCGGGCGTGATCCGGTCGGGGCTTC 34 171 0 CGTGATCCGG 0.765965 -130 CCGCACCCGGAGGTAGCGGGCAAGACCCCT 34 224 0 AGGTAGCGGG 0.405144 -77 TTCGACGGGGCCGCACCCGGAGGTAGCGGG 34 234 0 CCGCACCCGG 0.926812 -67 ********** Masking position 7 Map Score: 111.779 Number of sites scoring better than the average of aligned sites = 46135 Number in coding regions = 43062 Number in noncoding regions = 3073 Number of orfs with sites within 600 bp upstream = 1303 Fraction of orfs with sites within 600 bp upstream = 0.209284 Motif number 4 CACCGATGAACCGGATCGTCGCGCCCGCCG 3 86 1 CCGGATCGTC 0.951146 -215 CCGAAGATCGCGGCCGCGCCCAGCAACAGA 3 135 0 CGGCCGCGCC 0.936116 -166 ACTGATGACGACGGATCGCCCCCGGGGAGT 3 201 0 ACGGATCGCC 0.560729 -100 CTGGTTGTTGCGGCCGCGCCATGTCAAGTT 6 183 1 CGGCCGCGCC 0.936116 -118 GCTTACGTGTCGGGCACCCCGGCGCCACCC 7 45 0 CGGGCACCCC 0.684648 -42 GGCGGTCGAGCCTATCCGGGCG 8 145 0 CGGTCGAGCC 0.59567 -12 GCATAGCAATCCGGCTTGCCGTCTATGCTG 9 16 0 CCGGCTTGCC 0.965341 -197 GGGCTGCTGTCCACCTCGCCAAGGCTTCCT 9 153 0 CCACCTCGCC 0.802483 -60 CCTCCAGCCAGGGGATTGCCGAATCTCTCG 13 107 0 GGGGATTGCC 0.710779 -194 CCTGGCTGAACGGGATCCTCCAGCCAGGGG 13 123 0 CGGGATCCTC 0.860329 -178 CGGCGTCGGCGCGTCTCGCCGGCGCAAAGT 14 123 0 GCGTCTCGCC 0.893824 -178 GCACCGGTGTCGGGCTCGTCTTGGGCTGAT 14 219 0 CGGGCTCGTC 0.988933 -82 GAGCCGCCAGCCGGCGCCCCATCGGAGCCA 17 13 1 CCGGCGCCCC 0.917979 -288 GGCAAGACGCTGGGCTTGCCGGACACCGGA 17 53 0 TGGGCTTGCC 0.542253 -248 AGCGTCTTGCCGGGATAGTCGGGCGGCGAT 17 72 1 CGGGATAGTC 0.62036 -229 CCGATGACGGCGAAATCGCCGCCCGACTAT 17 86 0 CGAAATCGCC 0.705284 -215 CCACCGGTTACGATCTTGCCGACCATGGCC 17 149 1 CGATCTTGCC 0.686943 -152 CACTGACGCCGGGTCTCCCCGGCCCTATTG 17 182 0 GGGTCTCCCC 0.691061 -119 GCTATGGAGCCGATATTGCCCGTCAGTCAA 17 250 0 CGATATTGCC 0.41654 -51 AATATCGGCTCCATAGCGTCGGCCGCGGAT 17 263 1 CCATAGCGTC 0.282784 -38 GGACGGCATCGGGGATCGCCCTCGGGCGAT 20 31 1 GGGGATCGCC 0.909222 -270 GGATCCGGCACGGGCGCGTCGGCCTCGGCG 20 126 0 CGGGCGCGTC 0.971672 -175 GGGCAAGACACCGACCCGTCGACCGGATCC 20 150 0 CCGACCCGTC 0.646445 -151 TCGCCGATGGCGAACTCGTCGGCCATCCCC 20 201 0 CGAACTCGTC 0.761636 -100 ACCGATGTTTCCGGCCTGCCAGACTGGACG 21 93 0 CCGGCCTGCC 0.790912 -74 TCCTCCTCACCCGGCTCGCCGGTTCACATC 21 144 0 CCGGCTCGCC 0.992793 -23 GTCTGATTGCCGGGCTCCTCATCGGGCCGT 25 76 1 CGGGCTCCTC 0.949828 -200 CCGTGCCGGCCCGAATCGTCGCCCGGCAGG 25 102 1 CCGAATCGTC 0.814133 -174 GTCTGATTGCCGGGCTCCTCATCGGGCCGT 25 132 1 CGGGCTCCTC 0.949828 -144 CCGTGCCGGCCCGAATCGTCGCCCGGCAGG 25 158 1 CCGAATCGTC 0.814133 -118 CTCGGCTCGCCCAGCTCGCCGTCGATGCTG 25 252 0 CCAGCTCGCC 0.95632 -24 CAGCAACCGACCGTATCGTCACATGC 34 7 0 CCGTATCGTC 0.866 -294 GCCCTGGAATCGGACTCGACAAGTCGTAAA 34 118 0 CGGACTCGAC 0.647943 -183 AAGACCCCTTCGGTCTTGTCGATAGGCTGT 34 203 0 CGGTCTTGTC 0.857094 -98 AAGACCGAAGGGGTCTTGCCCGCTACCTCC 34 216 1 GGGTCTTGCC 0.717603 -85 ********** Masking position 10 Map Score: 50.964 Number of sites scoring better than the average of aligned sites = 17741 Number in coding regions = 16467 Number in noncoding regions = 1274 Number of orfs with sites within 600 bp upstream = 732 Fraction of orfs with sites within 600 bp upstream = 0.117571 Motif number 5 GTGGGCCTGGCCCCCCAACC 3 1 0 CCCCCCAACC 0.933519 -300 TAGCCTCTCAAGCCGCACCCACAGCCGTCG 3 50 1 AGCCGCACCC 0.826175 -251 ACCGGATCGTCGCGCCCGCCGCCGCAAGCG 3 95 1 CGCGCCCGCC 0.845502 -206 CGCGGCCGCGCCCAGCAACAGACCAACCAC 3 127 0 CCCAGCAACA 0.0614829 -174 TGTTGCTGGGCGCGGCCGCGATCTTCGGAG 3 137 1 CGCGGCCGCG 0.444983 -164 CCGTAGCTAGCCCCGCGACCCGGGCGCCGC 3 255 1 CCCCGCGACC 0.920119 -46 ACCCGGAGGCCGCCTCAGCCTGCGGCGCCC 3 276 0 CGCCTCAGCC 0.798193 -25 GTATGGACCCCGCGCCAGCGCGGTCAACCT 6 81 0 CGCGCCAGCG 0.905134 -220 CTTGACATGGCGCGGCCGCAACAACCAGGT 6 181 0 CGCGGCCGCA 0.562199 -120 GGCGGCCAAGCGCCGCTGCTGAGACTGGGA 6 244 0 CGCCGCTGCT 0.393707 -57 CACACACCATAGCCGCAGCTCAGCACGCCG 7 14 0 AGCCGCAGCT 0.507323 -73 TGTCGGGCACCCCGGCGCCACCCTCACACA 7 38 0 CCCGGCGCCA 0.711282 -49 TAGGTCCCGTACCGGCACCCTAACAGGGCC 8 67 1 ACCGGCACCC 0.840871 -90 AACAGGGCCCCCGGCCAACCTGTTGGTTGG 8 88 1 CCGGCCAACC 0.889998 -69 CGACGATGCGCGCCGCAGCGATACCTTGCC 8 117 0 CGCCGCAGCG 0.729155 -40 TCGAGCCTATCCGGGCGACGATGCGCGCCG 8 132 0 CCGGGCGACG 0.58385 -25 CCGGGCAGCATAGACGGCAA 9 1 1 CCGGGCAGCA 0.890597 -212 GGCAGCATAGACGGCAAGCCGGATTGCTAT 9 14 1 ACGGCAAGCC 0.149056 -199 AGCGGGTGCTGCCCCCAGCCGGC 10 4 0 GCCCCCAGCC 0.796298 -29 GCCAGCATCCCCGCCCAGGCATCGCAAATG 11 61 0 CCGCCCAGGC 0.671553 -24 ACGCCCCAAGCGGCGCAACCAAATTCGCTT 13 75 0 CGGCGCAACC 0.927349 -226 CCGAATCTCTCGCGACGCCCCAAGCGGCGC 13 89 0 CGCGACGCCC 0.683947 -212 AAGCCGTGCACGCCGCAGCGCCTACGCCCT 13 150 0 CGCCGCAGCG 0.729155 -151 CACGGCTTGGCCCCACAACCCGTATTGATG 13 172 1 CCCCACAACC 0.772107 -129 CATCAGCAAACCCCCAGCAGATGCTGCGT 14 10 1 ACCCCCAGCA 0.554319 -291 GATCGTTCGCCGACGCAGCATCTGCTGGGG 14 22 0 CGACGCAGCA 0.16421 -279 CCTAACAATGACCCGCGGCTTGGACTTTGC 14 100 1 ACCCGCGGCT 0.368731 -201 GACGCGCCGACGCCGCAACAAACCCTGCGC 14 138 1 CGCCGCAACA 0.744882 -163 TAGATTGAGACGCGGCACGCAAACGTGCTG 14 187 1 CGCGGCACGC 0.629779 -114 CCAAGACGAGCCCGACACCGGTGCGCTCCA 14 225 1 CCCGACACCG 0.517176 -76 GACACCGGTGCGCTCCAGCCCTGCCCACCT 14 238 1 CGCTCCAGCC 0.714737 -63 CGCTCCAGCCCTGCCCACCTGGCGCGGTTC 14 248 1 CTGCCCACCT 0.177804 -53 CGCGGTTCGCCACGACAGCCTTATATCCCA 14 270 1 CACGACAGCC 0.217348 -31 AGAGCTTGTCAGCGGCGCCCGGAGTGGTAT 15 32 0 AGCGGCGCCC 0.669384 -53 ATCCGCCCTCCCATCGCTGTTC 15 73 0 CCGCCCTCCC 0.567195 -12 CGCGGCTACGCGCGGCAAGCATCG 16 5 0 CGCGGCAAGC 0.515407 -50 GCGAGCTGATCCGCGCTGCAGAATGACTGC 16 34 1 CCGCGCTGCA 0.448624 -21 CAGAGCCGCCAGCCGGCGCCCCAT 17 5 1 GCCGCCAGCC 0.783963 -296 GGTCCGGTGTCCGGCAAGCCCAGCGTCTTG 17 51 1 CCGGCAAGCC 0.541197 -250 GGCGAAATCGCCGCCCGACTATCCCGGCAA 17 78 0 CCGCCCGACT 0.264549 -223 GACGCCGGGTCTCCCCGGCCCTATTGTGGG 17 178 0 CTCCCCGGCC 0.839824 -123 ACTGACCGTGCCGCCCACCACTGACGCCGG 17 200 0 CCGCCCACCA 0.667367 -101 TCAGTAACGTCTGCGCAACACGGGGTTGAC 17 225 1 CTGCGCAACA 0.274885 -76 CCTTTACTGTATCCGCGGCCGACGCTATGG 17 273 0 ATCCGCGGCC 0.56755 -28 ACTCACCGCGCACTCCCCTTGCGGG 18 6 1 CCGCGCACTC 0.456061 -89 TTGCGGGCCGCCCCGCAACGCTTCTGGCCG 18 29 1 CCCCGCAACG 0.832576 -66 CGTGTTACCGATGCCCGGCCAGAAGCGTTG 18 44 0 ATGCCCGGCC 0.326159 -51 ATCCCCGATGCCGTCCACCCCTTCGACGAA 20 17 0 CCGTCCACCC 0.410588 -284 ACGGGGTGCCAGCGCCAACCTGATGTCGCA 20 87 1 AGCGCCAACC 0.626895 -214 AGTTGTGCACCGCCGAGGCCGACGCGCCCG 20 116 1 CGCCGAGGCC 0.579954 -185 ACCCGAGATCCTGGCCAGCGGCCACCGTCG 20 265 0 CTGGCCAGCG 0.565056 -36 TACCCGCGGGCCGCGCACCTGGTAACAGTC 21 54 1 CCGCGCACCT 0.667222 -113 ACCGATGTTTCCGGCCTGCCAGACTGGACG 21 93 0 CCGGCCTGCC 0.759165 -74 GCGATGTGAACCGGCGAGCCGGGTGAGGAG 21 142 1 CCGGCGAGCC 0.587535 -25 AGATCCTCCTCACCCGGCTCGCCGG 21 152 0 CTCCTCACCC 0.242434 -15 AACCTGGGAGCGGCGCAGCCAAGGAAGGAA 22 22 0 CGGCGCAGCC 0.970981 -185 CTGTGCAGCGCGGGGCAGCCAACCCAAGAC 22 101 1 CGGGGCAGCC 0.977682 -106 AAGACAATTACCCCGAAGCCCACAATGTGC 22 126 1 CCCCGAAGCC 0.775441 -81 TCCGCACTATCCGCCCAGTCCGGTTCTTCT 22 175 1 CCGCCCAGTC 0.56316 -32 AAAGAACATGATGGGCACCAGCGCCCATCA 24 25 1 ATGGGCACCA 0.0780015 -135 CACCGCGAACCGCCGGAGCCGGCGAGTAGA 24 67 0 CGCCGGAGCC 0.770783 -93 TCGCGGTGCCCGCGACAGCCAGCATGTGGG 24 89 1 CGCGACAGCC 0.919854 -71 GATGGTGAGGGCCCGCAGCGCCCGGCAGGG 25 47 1 GCCCGCAGCG 0.530173 -229 CGATGAGGAGCCCGGCAATCAGACCCTGCC 25 70 0 CCCGGCAATC 0.435593 -206 CGATTCGGGCCGGCACGGCCCGATGAGGAG 25 90 0 CGGCACGGCC 0.789711 -186 TCAGACCCTGCCGGGCGACGATTCGGGCCG 25 108 0 CCGGGCGACG 0.58385 -168 CGATGAGGAGCCCGGCAATCAGACCCTGCC 25 126 0 CCCGGCAATC 0.435593 -150 CGATTCGGGCCGGCACGGCCCGATGAGGAG 25 146 0 CGGCACGGCC 0.789711 -130 CCGGGCCCTGCCGGGCGACGATTCGGGCCG 25 164 0 CCGGGCGACG 0.58385 -112 TATCGGTCGAATCGCCAGCCCGGACGGTGT 25 213 1 ATCGCCAGCC 0.596066 -63 GCGGCACTGCCGTTGCGATAG 27 2 1 CGGCACTGCC 0.416195 -29 CGGTACGGGACCTGGCGGCCCAAGACACTC 31 24 1 CCTGGCGGCC 0.418882 -198 TCGCCGTCAACTCCGCACCCAACGTCTCCG 31 76 0 CTCCGCACCC 0.874501 -146 CACGTGATTGTGCGACAGCCGCCATCTTCC 31 121 0 TGCGACAGCC 0.127294 -101 AGCGGATGCCACCGCCAGGCCACGTGATTG 31 141 0 ACCGCCAGGC 0.311783 -81 AAATTGTAACCGCGGGACCCCTCCGTCAGC 31 168 0 CGCGGGACCC 0.562926 -54 TTGCTGGCCACGCGGCAGCTACGGTGCCGC 34 31 1 CGCGGCAGCT 0.857782 -270 CCAATACTAACTCGTCAGCCGGCGGCACCG 34 52 0 CTCGTCAGCC 0.434948 -249 GGGGCTTCGTCCGTGCAGCAGTGAACGCTT 34 149 0 CCGTGCAGCA 0.30187 -152 GCACGGACGAAGCCCCGACCGGATCACGCC 34 163 1 AGCCCCGACC 0.469949 -138 CGCCCGCTTGACGGACAGCCTATCGACAAG 34 189 1 ACGGACAGCC 0.54934 -112 GATTCGACGGGGCCGCACCCGGAGGTAGCG 34 236 0 GGCCGCACCC 0.639853 -65 AGACTTTCTGCGCGGCCGCCTTTGCGGATT 34 262 0 CGCGGCCGCC 0.811035 -39 ********** Masking position 6 Map Score: 90.4783 Number of sites scoring better than the average of aligned sites = 57690 Number in coding regions = 53953 Number in noncoding regions = 3737 Number of orfs with sites within 600 bp upstream = 1419 Fraction of orfs with sites within 600 bp upstream = 0.227915 Motif number 6 CAGCCGTCGAGGAGCCACCGATGAACCGGA 3 71 1 GGAGCCACCG 0.972831 -230 GCCTCAGCCTGCGGCGCCCGGGTCGCGGGG 3 265 0 GCGGCGCCCG 0.963375 -36 GCAGGCTGAGGCGGCCTCCGGGTCGCAG 3 283 1 GCGGCCTCCG 0.971731 -18 CCATCTGGATGGATCCACCGATTCTTGAGA 6 272 1 GGATCCACCG 0.873703 -29 CGCCCGGATAGGCTCGACCGCC 8 145 1 GGCTCGACCG 0.583007 -12 CCTCGCCAAGGCTTCCTCCGGGCCCTGCTG 9 140 0 GCTTCCTCCG 0.876728 -73 GCGAGCGGGTGCTGCCCCCAGCCGGC 10 7 0 GCTGCCCCCA 0.836236 -26 TCCGCCGCGAGCGGGTGCTGCCC 10 20 0 GCCGCGAGCG 0.825531 -13 TGGCTGAACGGGATCCTCCAGCCAGGGGAT 13 121 0 GGATCCTCCA 0.166453 -180 AACCCGTATTGATGCCACCTGAACAAGAAG 13 188 1 GATGCCACCT 0.328242 -113 GAGCTTGTCAGCGGCGCCCGGAGTGGTATC 15 31 0 GCGGCGCCCG 0.963375 -54 GCGCCCCATCGGAGCCAGCGAACCCGGTCC 17 26 1 GGAGCCAGCG 0.945112 -275 TCCCGTTCGGCATGCCACCGGTTACGATCT 17 135 1 CATGCCACCG 0.394763 -166 GCGTGGACGGGGTGCCAGCGCCAACCTGAT 20 81 1 GGTGCCAGCG 0.971188 -220 CTAACCGGCCGCTGCCAGCAGTCCTGCCAT 20 230 0 GCTGCCAGCA 0.77345 -71 ATCCTGGCCAGCGGCCACCGTCGGCCGACT 20 258 0 GCGGCCACCG 0.988869 -43 AATGCTGCCAGAGCAGACCCGAG 20 288 0 GCTGCCAGAG 0.696794 -13 TACCAGGTGCGCGGCCCGCGGGTAGGCCTG 21 48 0 GCGGCCCGCG 0.968484 -119 GGATTCTATGGCGGCCAGGGACGCACATTG 22 148 0 GCGGCCAGGG 0.643327 -59 GCGAACCGCCGGAGCCGGCGAGTAGACGCG 24 63 0 GGAGCCGGCG 0.790458 -97 GGCGGTTCGCGGTGCCCGCGACAGCCAGCA 24 83 1 GGTGCCCGCG 0.960387 -77 CCACCCATGCTGGCACAGTCACCCGGCA 25 9 1 GCTGGCACAG 0.15851 -267 GTGAGGGCCCGCAGCGCCCGGCAGGGTCTG 25 51 1 GCAGCGCCCG 0.935394 -225 CCGGGCTGGCGATTCGACCGATACGCATTT 25 206 0 GATTCGACCG 0.56971 -70 CGCGATCCACGTGGCGACCGCGGAGACGTT 31 56 1 GTGGCGACCG 0.660413 -166 TCCGTCAGCGGATGCCACCGCCAGGCCACG 31 147 0 GATGCCACCG 0.943011 -75 GCTGACGGAGGGGTCCCGCGGTTACAATTT 31 168 1 GGGTCCCGCG 0.813853 -54 TGCTTTGTTAGGAGCGTCCG 33 38 1 GGAGCGTCCG 0.851569 -10 CGGCAGCTACGGTGCCGCCGGCTGACGAGT 34 43 1 GGTGCCGCCG 0.938861 -258 TCCGGTCGGGGCTTCGTCCGTGCAGCAGTG 34 156 0 GCTTCGTCCG 0.746546 -145 GGTCTTGCCCGCTACCTCCGGGTGCGGCCC 34 227 1 GCTACCTCCG 0.560351 -74 ********** Masking position 5 Map Score: 43.929 Number of sites scoring better than the average of aligned sites = 18226 Number in coding regions = 17301 Number in noncoding regions = 925 Number of orfs with sites within 600 bp upstream = 613 Fraction of orfs with sites within 600 bp upstream = 0.0984581 Motif number 7 GAGGCGGCCTCCGGGTCGCAG 3 290 1 CCGGGTCGCA 0.884559 -11 GCCGCAACAACCAGGTTTCCGGCCGATGTT 6 167 0 CCAGGTTTCC 0.392331 -134 ACCTTAGGGTCTCAAGAATCGGTG 6 287 0 TAGGGTCTCA 0.822219 -14 TTCGCCGACGCAGCATCTGCTGGGGGTTTG 14 17 0 CAGCATCTGC 0.666368 -284 CGTTTGCGTGCCGCGTCTCAATCTAGTGCA 14 182 0 CCGCGTCTCA 0.9225 -119 AACCTGGTTATCGGGTCTGCCCGATGACGG 17 106 0 TCGGGTCTGC 0.974332 -195 ATTGTGGGGCCATGGTCGGCAAGATCGTAA 17 156 0 CATGGTCGGC 0.754761 -145 ACCACTGACGCCGGGTCTCCCCGGCCCTAT 17 184 0 CCGGGTCTCC 0.985374 -117 GCACGGTCAGTAACGTCTGCGCAACACGGG 17 219 1 TAACGTCTGC 0.722224 -82 ATCGGCTCCATAGCGTCGGCCGCGGATACA 17 266 1 TAGCGTCGGC 0.848668 -35 GGCCAGGATCTCGGGTCTGCTCTGGCAGCA 20 279 1 TCGGGTCTGC 0.974332 -22 TCATGTTCTTTCGCGTCTACTCGCCGGCTC 24 52 1 TCGCGTCTAC 0.6683 -108 CAGCGCCCGGCAGGGTCTGATTGCCGGGCT 25 62 1 CAGGGTCTGA 0.947621 -214 CGTCGCCCGGCAGGGTCTGATTGCCGGGCT 25 118 1 CAGGGTCTGA 0.947621 -158 ACTCCGCACCCAACGTCTCCGCGGTCGCCA 31 67 0 CAACGTCTCC 0.821883 -155 GCTGCACTACCCTGGTCTGCT 32 11 1 CCTGGTCTGC 0.926771 -11 ********** Masking position 6 Map Score: 14.6986 Number of sites scoring better than the average of aligned sites = 4486 Number in coding regions = 4152 Number in noncoding regions = 334 Number of orfs with sites within 600 bp upstream = 249 Fraction of orfs with sites within 600 bp upstream = 0.0399936 Motif number 8 GTCCTGCTGCACCATCAGGGTCACTCCGAA 3 160 0 ACCATCAGGG 0.286124 -141 AGCTAGCCCCGCGACCCGGGCGCCGCAGGC 3 259 1 GCGACCCGGG 0.892502 -42 TCACGATTTGGCACCTGACAGC 4 3 1 ACGATTTGGC 0.301989 -28 CTCACAGATCGCGGGTCGGCGCAGGTTGAC 6 59 1 GCGGGTCGGC 0.601492 -242 CGGGTTGTATGCGAGCCCAGTTCCGAACTG 6 213 0 GCGAGCCCAG 0.900985 -88 AATTCGGCTTACGTGTCGGGCACCCCGGCG 7 51 0 ACGTGTCGGG 0.658369 -36 TAGTTGCATAGCAATCCGGCTTGCCGTCTA 9 21 0 GCAATCCGGC 0.735831 -192 GATCCTACTAGCAAGTCCGCCAGATCTTGT 11 18 1 GCAAGTCCGC 0.79037 -67 CATGAACATCGCGAGGCCGGTTCTTCGTGG 13 15 1 GCGAGGCCGG 0.918037 -286 GCAGTCCCTTGGGATCCCGGCACGTTACCA 13 42 0 GGGATCCCGG 0.912292 -259 AGGCGCTGCGGCGTGCACGGCTTGGCCCCA 13 157 1 GCGTGCACGG 0.743305 -144 ATCTAGTGCAGCGAGTACGGGTCGGCGCAG 14 162 0 GCGAGTACGG 0.905254 -139 TCAGCCCAAGACGAGCCCGACACCGGTGCG 14 220 1 ACGAGCCCGA 0.711507 -81 CAGAGCCGCCAGCCGGCGCCCCATCGG 17 8 1 GCCAGCCGGC 0.842359 -293 ATCGGAGCCAGCGAACCCGGTCCGGTGTCC 17 33 1 GCGAACCCGG 0.886161 -268 CCGGTGTCCGGCAAGCCCAGCGTCTTGCCG 17 54 1 GCAAGCCCAG 0.488415 -247 TCGCCGCCCGACTATCCCGGCAAGACGCTG 17 71 0 ACTATCCCGG 0.448196 -230 TAGTCGGGCGGCGATTTCGCCGTCATCGGG 17 87 1 GCGATTTCGC 0.641104 -214 TCGCCCGAGGGCGATCCCCGATGCCGTCCA 20 30 0 GCGATCCCCG 0.740891 -271 TCCGGCACGGGCGCGTCGGCCTCGGCGGTG 20 123 0 GCGCGTCGGC 0.626169 -178 GGGATGGCCGACGAGTTCGCCATCGGCGAT 20 202 1 ACGAGTTCGC 0.616676 -99 GCCGCTGGCCAGGATCTCGGGTCTGCTCTG 20 273 1 AGGATCTCGG 0.322414 -28 TATTGGTATTGCGATCACGGTGCCAGGCCT 21 25 1 GCGATCACGG 0.909668 -142 ATGTGAACCGGCGAGCCGGGTGAGGAGGAT 21 145 1 GCGAGCCGGG 0.991684 -22 CGCGAGTAGGCGCAAAAGAAC 24 2 1 GCGAGTAGGC 0.765313 -158 CGGCCCGATGAGGAGCCCGGCAATCAGACC 25 75 0 AGGAGCCCGG 0.904432 -201 CTGCCGGGCGACGATTCGGGCCGGCACGGC 25 101 0 ACGATTCGGG 0.864443 -175 CGGCCCGATGAGGAGCCCGGCAATCAGACC 25 131 0 AGGAGCCCGG 0.904432 -145 CTGCCGGGCGACGATTCGGGCCGGCACGGC 25 157 0 ACGATTCGGG 0.864443 -119 CGGTCGAATCGCCAGCCCGGACGGTGTCGC 25 216 1 GCCAGCCCGG 0.965687 -60 AGCATCGACGGCGAGCTGGGCGAGCCGAGT 25 253 1 GCGAGCTGGG 0.932206 -23 TCCTGCCAGTCCGCAACAAGCCCG 30 5 1 GCCAGTCCGC 0.836465 -33 CCAGTCCGCAACAAGCCCGGAAAGGATCCG 30 16 1 ACAAGCCCGG 0.877317 -22 GCCCACTTGTGCGTTCCGGCCCGGAAATTG 31 192 0 GCGTTCCGGC 0.74898 -30 ********** Masking position 9 Map Score: 39.4485 Number of sites scoring better than the average of aligned sites = 16392 Number in coding regions = 15180 Number in noncoding regions = 1212 Number of orfs with sites within 600 bp upstream = 734 Fraction of orfs with sites within 600 bp upstream = 0.117893 Motif number 9 CAAGCCGCACCCACAGCCGTCGAGGAGCCACC 3 58 1 CCCAGCGTCG 0.532793 -243 GCGCCCGCCGCCGCAAGCGTGGTGGTTGGTCT 3 106 1 CCCAACGTGG 0.923072 -195 GGCGATCCGTCGTCATCAGTGCTCAACCGGGT 3 211 1 CGCATAGTGC 0.261353 -90 GACACGTAAGCCGAATTCGGCGGTGCAGACGT 7 64 1 CCAATCGGCG 0.392862 -23 TCCACAAATTCCACAAAAGGGGGTTTGGATCC 8 24 1 CCCAAAGGGG 0.925411 -133 CGTACCGGCACCCTAACAGGGCCCCCGGCCAA 8 74 1 CCTAAAGGGC 0.748357 -83 GGCGGTCGAGCCTATCCGGGCGACGATGCGC 8 136 0 GCTATCGGGC 0.31542 -21 GAACGCATTGCCTCAGCAGGGCCCGGAGGAAG 9 127 1 CCCAGAGGGC 0.881622 -86 GCGGGTGCTGCCCCCAGCCGGC 10 1 0 CCCCACCGGC 0.846181 -32 TCCGCCGCGAGCGGGTGCTGCCCCCA 10 17 0 CCCGACGGGT 0.336491 -16 TCTCGCGACGCCCCAAGCGGCGCAACCAAATT 13 80 0 CCCAACGGCG 0.96381 -221 GAGACGCGGCACGCAAACGTGCTGTTATCAGC 14 193 1 ACCAACGTGC 0.714429 -108 ATCGGAGAATCCTCAAGCGGGCA 15 2 0 CCCAACGGGC 0.993817 -83 CAGAGCCGCCAGCCGGCGCCCCATCGG 17 6 1 CCCCACCGGC 0.846528 -295 GGCGATTTCGCCGTCATCGGGCAGACCCGATA 17 96 1 CCTCACGGGC 0.836321 -205 GACCATGGCCCCACAATAGGGCCGGGGAGACC 17 169 1 CCCAAAGGGC 0.971148 -132 ACCGCGCACTCCCCTTGCGGGCCGCCCCGCAA 18 15 1 CCCTTCGGGC 0.857133 -80 ACGTCCGGTAACAGATCCGGGCAAGACACCGA 20 166 0 ACGATCGGGC 0.552612 -135 GTCGGCCATCCCCCATACGTCCGGTAACAGAT 20 182 0 CCCATCGTCC 0.903202 -119 ACGATGACGTCCGCCTCCTGGGCCAGTAACCC 22 70 1 CCCCTCTGGG 0.640685 -137 GGCTCCGGGCCCACATGCTGGCTGTCGCGGGC 24 96 0 CCCATCTGGC 0.927009 -64 GCACTTCCTCCCACACCATGGCCGCTAGTCAA 24 137 0 CCCACATGGC 0.315533 -23 CCACCCATGCTGGCACAGTCACCC 25 3 1 ACCATCTGGC 0.50565 -273 CTGCGGGCCCTCACCATCGGGCCCCGTGCCGG 25 33 0 TCCCACGGGC 0.650486 -243 TTGCCGGGCTCCTCATCGGGCCGTGCCGGCCC 25 82 1 CCCATGGGCC 0.833263 -194 GCCGTGCCGGCCCGAATCGTCGCCCGGCAGGG 25 101 1 CCGAACGTCG 0.417202 -175 TTGCCGGGCTCCTCATCGGGCCGTGCCGGCCC 25 138 1 CCCATGGGCC 0.833263 -138 GCCGTGCCGGCCCGAATCGTCGCCCGGCAGGG 25 157 1 CCGAACGTCG 0.417202 -119 TCCTGCCAGTCCGCAACAAGCCCGGAAAGGAT 30 11 1 CCCAAAAGCC 0.337955 -27 ATAGGCTGTCCGTCAAGCGGGCGTGATCCGGT 34 180 0 CGCAACGGGC 0.925875 -121 ** *** ***** Masking position 2 Map Score: 20.0207 Number of sites scoring better than the average of aligned sites = 8814 Number in coding regions = 7986 Number in noncoding regions = 828 Number of orfs with sites within 600 bp upstream = 556 Fraction of orfs with sites within 600 bp upstream = 0.0893029 Motif number 10 ACGCTTGCGGCGGCGGGCGCGACGATCCGGTTCA 3 92 0 CGGCGGCACG 0.509381 -209 GCCCGGGTCGCGGGGCTAGCTACGGTTACCGTAC 3 246 0 CGGGCTCACG 0.894403 -55 GCTAGCCCCGCGACCCGGGCGCCGCAGGCTGAGG 3 260 1 CGACCGCCCG 0.793821 -41 GACATCTGTGCGACTTTCGCCGCGAGAAAGGCTG 5 28 0 CGACTTCGCG 0.937055 -81 TTCCGGCGTGCTGAGCTGCGGCTATGGTGT 7 7 1 CGTGTGCGCG 0.950618 -80 AGGGTGGCGCCGGGGTGCCCGACACGTAAGCCGA 7 44 1 CGGGTGCACA 0.838018 -43 ATCCGGGCGACGATGCGCGCCGCAGCGATACCTT 8 120 0 CGATCGCGCA 0.612852 -37 GGCGGTCGAGCCTATCCGGGCGACGATGCG 8 137 0 CGAGCTCGGG 0.679411 -20 GAAGCCTTGGCGAGGTGGACAGCAGCCCACACAT 9 155 1 CGAGTGCGCA 0.928976 -58 GTAGGCGCTGCGGCGTGCACGGCTTGGCCCCACA 13 155 1 CGGCTGCGCT 0.85801 -146 TGGTGACCAAAGGCATTCTCGACGAATGCCGGGT 13 219 0 AGGCTTCACG 0.508315 -82 ATAAGGCTGTCGTGGCGAACCGCGCCAGGTGGGC 14 260 0 CGTGCGCGCG 0.876586 -41 AGTCGATGCTAGAGCTTGTCAGCGGCGCCCGGAG 15 38 0 AGAGTTCGCG 0.77925 -47 GCTCTAGCATCGACTCGAACAGCGATGGGAGGGC 15 57 1 CGACCGCGCG 0.985626 -28 CGATGCTTGCCGCGCGTAGCCGCG 16 1 1 CGATCTCGCG 0.710208 -54 CGTAGCCGCGCGAGCTGATCCGCGCTGCAGAATG 16 25 1 CGAGTGCGCG 0.986236 -30 GTCCGGTGTCCGGCAAGCCCAGCGTCTTGCCGGG 17 52 1 CGGCAGCGCG 0.894661 -249 TCTTGCCGGGATAGTCGGGCGGCGATTTCGCCGT 17 76 1 ATAGCGCGCG 0.323932 -225 ACCCGGCGTCAGTGGTGGGCGGCACGGTCAGTAA 17 198 1 AGTGTGCGCA 0.380021 -103 AGAAGCGTTGCGGGGCGGCCCGCAAGGGGAGTGC 18 20 0 CGGGCGCGCA 0.969657 -75 GGTTCGTCGAAGGGGTGGACGGCATCGGGGATCG 20 15 1 AGGGTGCGCA 0.810871 -286 TGCACCATGCCGGCGTGGACGGGGTGCCAGCGCC 20 69 1 CGGCTGCGGG 0.888852 -232 CGGACGTATGGGGGATGGCCGACGAGTTCGCCAT 20 191 1 GGGGTGCACG 0.604477 -110 ATCACGGTGCCAGGCCTACCCGCGGGCCGCGCAC 21 38 1 CAGGCTCGCG 0.593709 -129 GTCAGCAGATAGGCTTTACCAGCGATGTGAACCG 21 121 1 AGGCTTCGCG 0.830244 -46 CTCACTCGGCTCGCCCAGCTCGCCGTCGAT 25 256 0 CGGCCGCGCT 0.89603 -20 TCGAGGTGGCTCACGGTACGGGACC 31 2 1 CGAGTGTACG 0.301406 -220 CCAAGACACTCGACGCGATCCACGTGGCGACCGC 31 43 1 CGACCGCACG 0.931612 -179 ACGTTGGGTGCGGAGTTGACGGCGATGATCACCT 31 81 1 CGGATTCGCG 0.667691 -141 **** ** * *** Masking position 10 Map Score: 36.3477 Number of sites scoring better than the average of aligned sites = 23057 Number in coding regions = 21783 Number in noncoding regions = 1274 Number of orfs with sites within 600 bp upstream = 767 Fraction of orfs with sites within 600 bp upstream = 0.123193 Motif number 11 TGGAATTTGCTGTCAGGTGCCAAATCGT 4 13 0 GCTGTCAGGT 0.857659 -18 AAGTCGCACAGATGTCAGGATGAGCAGGTT 5 46 1 GATGTCAGGA 0.888946 -63 TGGCGGACTTGCTAGTAGGATCGGACAAC 11 10 0 GCTAGTAGGA 0.827863 -75 GGGCGGGGATGCTGGCAGGC 11 75 1 GCTGGCAGGC 0.99176 -10 CGCCATCGGCGATGGCAGGACTGCTGGCAG 20 219 1 GATGGCAGGA 0.97599 -82 TGCGCGGCCCGCGGGTAGGCCTGGCACCGT 21 41 0 GCGGGTAGGC 0.848329 -126 GCCCGTCCAGTCTGGCAGGCCGGAAACATC 21 90 1 TCTGGCAGGC 0.931316 -77 GACGCTATGATAGCAGGATTTACGGAAT 26 33 0 GATAGCAGGA 0.888945 -18 CTTGTTGCGGACTGGCAGGA 30 1 0 ACTGGCAGGA 0.932661 -37 ********** Masking position 7 Map Score: 5.45371 Number of sites scoring better than the average of aligned sites = 1462 Number in coding regions = 1339 Number in noncoding regions = 123 Number of orfs with sites within 600 bp upstream = 140 Fraction of orfs with sites within 600 bp upstream = 0.0224863 Motif number 12 AGTGGCGGTTTCTTGTCCTGCTGCACCATCA 3 173 0 TCTTGTCTGC 0.703059 -128 GTCGATTTCCTGTTCCACAAATTCCACA 8 8 1 TCCTGTCCAC 0.789751 -149 CAAGACTAGGTCCCGTACCGGCACCCTAACA 8 61 1 TCCCGTCCGG 0.979828 -96 GGCTGGAGGATCCCGTTCAGCCAGGGCGTAG 13 128 1 TCCCGTCAGC 0.982849 -173 GCCGGGTTCTTCTTGTTCAGGTGGCATCAAT 13 195 0 TCTTGTCAGG 0.838702 -106 CGCGTCTCAATCTAGTGCAGCGAGTACGGGT 14 170 0 TCTAGTCAGC 0.671461 -131 ATAACCAGGTTCCCGTTCGGCATGCCACCGG 17 125 1 TCCCGTCGGC 0.94633 -176 AGGCCGACGCGCCCGTGCCGGATCCGGTCGA 20 131 1 GCCCGTCCGG 0.938821 -170 AGACCCGAGATCCTGGCCAGCGGCCACCGTC 20 266 0 TCCTGGCAGC 0.905536 -35 AGTCCAGTGTGCCCGTCCAGTCTGGCAGGCC 21 80 1 GCCCGTCAGT 0.736085 -87 GGGCCAGTAACCCTGTGCAGCGCGGGGCAGC 22 89 1 CCCTGTCAGC 0.918575 -118 CGCGTTCAGATCTTGTGCCGC 23 1 0 TCTTGTCCGC 0.95496 -36 CACCATCGGGCCCCGTGCCGGGTGACTGTGC 25 23 0 CCCCGTCCGG 0.938821 -253 GGCCGCCAGGTCCCGTACCGTGAGCCACCTC 31 13 0 TCCCGTCCGT 0.942571 -209 GCGTCGAGTGTCTTGGGCCGCCAGGTCCCGT 31 28 0 TCTTGGCCGC 0.850567 -194 ****** **** Masking position 5 Map Score: 16.5873 Number of sites scoring better than the average of aligned sites = 1666 Number in coding regions = 1547 Number in noncoding regions = 119 Number of orfs with sites within 600 bp upstream = 126 Fraction of orfs with sites within 600 bp upstream = 0.0202377 Motif number 13 CGTGGTGGTTGGTCTGTTGCTGGGCGCGGC 3 123 1 GGTCTGTTGC 0.727225 -178 CGACCGGTAGGTTAGGACAGCCTTT 5 6 1 GGTAGGTTAG 0.948757 -103 GAGGCAATGCGTTCGGTTACTGATACTAGA 9 111 0 GTTCGGTTAC 0.883325 -102 GCGGGTCATTGTTAGGTTAGACTCCACTAA 14 86 0 GTTAGGTTAG 0.803427 -215 CCGGTCGACGGGTCGGTGTCTTGCCCGGAT 20 154 1 GGTCGGTGTC 0.911728 -147 TGCTGGCAGCGGCCGGTTAGTCGGCCGACG 20 240 1 GGCCGGTTAG 0.895072 -61 CGGACGGTTGGTTCCTTCCTT 22 2 1 GGACGGTTGG 0.916636 -205 TCGCCAGCCCGGACGGTGTCGCTTTTGCCA 25 224 1 GGACGGTGTC 0.719317 -52 ATCTTCCTGTGGTAGGTGATCATCGCCGTC 31 98 0 GGTAGGTGAT 0.66394 -124 GCAAGTGCTTGGTAGGTTAGCCTACAGGGC 33 11 0 GGTAGGTTAG 0.948757 -37 GTGACGATACGGTCGGTTGCTGGCCACGCG 34 15 1 GGTCGGTTGC 0.973792 -286 CTGCTGAAGGGTTAGGTGGGT 34 290 1 GTTAGGTGGG 0.784613 -11 ********** Masking position 7 Map Score: 6.2696 Number of sites scoring better than the average of aligned sites = 2188 Number in coding regions = 2027 Number in noncoding regions = 161 Number of orfs with sites within 600 bp upstream = 168 Fraction of orfs with sites within 600 bp upstream = 0.0269836 Motif number 14 CCGGGGAGTGGCGGTTTCTTGTCCTGCTGC 3 180 0 GCGGTTTCTT 0.808212 -121 CCGCGCTGGCGCGGGGTCCATACAGAATTG 6 88 1 GCGGGGTCCA 0.805236 -213 ATCGCTAGATCTGGTGTCTTGCAAGAGTTA 6 132 0 CTGGTGTCTT 0.512536 -169 TCGACGAATGCCGGGTTCTTCTTGTTCAGG 13 205 0 CCGGGTTCTT 0.769311 -96 CCGCATATTAGTGGAGTCTAGCCTAAGCTG 14 55 1 GTGGAGTCTA 0.910539 -246 AAGCTGATTAGTGGAGTCTAACCTAACAAT 14 79 1 GTGGAGTCTA 0.910539 -222 GGCGGATAGTGCGGATTCTATGGCGGCCAG 22 160 0 GCGGATTCTA 0.954274 -47 GCATGTGGGCCCGGAGCCTATAGATGGTTG 24 110 1 CCGGAGCCTA 0.91025 -50 GGCCGGAGACTATCGCAACGGC 27 19 0 CCGGAGACTA 0.867671 -12 GGCGGATCCTTTCCGGGCTTG 30 27 0 GCGGATCCTT 0.866933 -11 CGTGGCGACCGCGGAGACGTTGGGTGCGGA 31 65 1 GCGGAGACGT 0.78133 -157 GGCCGCCTTTGCGGATTCGACGGGGCCGCA 34 249 0 GCGGATTCGA 0.888962 -52 ********** Masking position 8 Map Score: 3.34405 Number of sites scoring better than the average of aligned sites = 1372 Number in coding regions = 1242 Number in noncoding regions = 130 Number of orfs with sites within 600 bp upstream = 129 Fraction of orfs with sites within 600 bp upstream = 0.0207196 Motif number 15 GGCCGTTACTCCTTGGACACG 2 24 0 GCCGTTACTC 0.821555 -11 CGGCGGGCGCGACGATCCGGTTCATCGGTG 3 86 0 GACGATCCGG 0.651717 -215 CAGGTTTCCGGCCGATGTTCTTAGATCGCT 6 156 0 GCCGATGTTC 0.398268 -145 GCGGCCAAGCGCCGCTGCTGAGACTGGGAT 6 243 0 GCCGCTGCTG 0.810993 -58 CTGTTAGGGTGCCGGTACGGGACCTAGTCT 8 63 0 GCCGGTACGG 0.941593 -94 CTATCCGGGCGACGATGCGCGCCGCAGCGA 8 126 0 GACGATGCGC 0.969719 -31 ACTGATACTAGACGTTGCACATACACGTCG 9 93 0 GACGTTGCAC 0.752021 -120 AGCCGTGCACGCCGCAGCGCCTACGCCCTG 13 149 0 GCCGCAGCGC 0.770221 -152 CCAATCGCAGGCCGATACTCTGTGCCCTAG 13 250 1 GCCGATACTC 0.86654 -51 CCGCGGCTTGGACTTTGCGCCGGCGAGACG 14 112 1 GACTTTGCGC 0.591631 -189 CGAGCCCGACACCGGTGCGCTCCAGCCCTG 14 231 1 ACCGGTGCGC 0.905554 -70 GTGTTGCGCAGACGTTACTGACCGTGCCGC 17 216 0 GACGTTACTG 0.516963 -85 CCCGGCCAGAAGCGTTGCGGGGCGGCCCGC 18 31 0 AGCGTTGCGG 0.452748 -64 AAACCGTGTTACCGATGCCCGGCCAGAAGC 18 48 0 ACCGATGCCC 0.477683 -47 CGTCGGCCTCGGCGGTGCACAACTGCGACA 20 110 0 GGCGGTGCAC 0.601675 -191 CACCGCCGAGGCCGACGCGCCCGTGCCGGA 20 123 1 GCCGACGCGC 0.89046 -178 CACCCGGCTCGCCGGTTCACATCGCTGGTA 21 137 0 GCCGGTTCAC 0.600854 -30 CCTGCCGGGCGACGATTCGGGCCGGCACGG 25 102 0 GACGATTCGG 0.761341 -174 CCTGCCGGGCGACGATTCGGGCCGGCACGG 25 158 0 GACGATTCGG 0.761341 -118 TGGCGATTCGACCGATACGCATTTGGATGA 25 200 0 ACCGATACGC 0.798604 -76 GCGGCACTGCCGTTGCGATAGTCTCCGG 27 9 1 GCCGTTGCGA 0.781636 -22 CAATTTCCGGGCCGGAACGCACAAGTGGGC 31 192 1 GCCGGAACGC 0.729605 -30 GCATGTGACGATACGGTCGGTTGCTG 34 7 1 GACGATACGG 0.875702 -294 CTGCGCGGCCGCCTTTGCGGATTCGACGGG 34 255 0 GCCTTTGCGG 0.723306 -46 ********** Masking position 3 Map Score: 14.8051 Number of sites scoring better than the average of aligned sites = 14588 Number in coding regions = 13640 Number in noncoding regions = 948 Number of orfs with sites within 600 bp upstream = 671 Fraction of orfs with sites within 600 bp upstream = 0.107774