AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00251_mtub_reg_300.orf -o00251_mtub_300.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 gabD2 25 gabD2 #2 Rv0235c 34 hypothetical protein Rv0235c #3 Rv0236c 300 hypothetical protein Rv0236c #4 aspC 30 aspC #5 Rv0338c 108 hypothetical protein Rv0338c #6 Rv0339c 185 hypothetical protein Rv0339c #7 Rv0807 300 hypothetical protein Rv0807 #8 purF 86 purF #9 Rv0858c 156 hypothetical protein Rv0858c #10 fdxC 212 fdxC #11 Rv1178 32 hypothetical protein Rv1178 #12 rocA 84 rocA #13 Rv1335 21 hypothetical protein Rv1335 #14 gabD1 300 gabD1 #15 bfrA 300 bfrA #16 Rv1877 84 hypothetical protein Rv1877 #17 glnA3 54 glnA3 #18 glnA1 300 glnA1 #19 glnA2 94 glnA2 #20 Rv2223c 61 hypothetical protein Rv2223c #21 Rv2224c 300 hypothetical protein Rv2224c #22 gabT 166 gabT #23 PE_PGRS 206 PE_PGRS #24 Rv2854 36 hypothetical protein Rv2854 #25 glnA4 159 glnA4 #26 map 41 map #27 Rv2862c 300 hypothetical protein Rv2862c #28 Rv2993c 275 hypothetical protein Rv2993c #29 lat 50 lat #30 Rv3291c 30 hypothetical protein Rv3291c #31 phyA 28 phyA #32 idsA 22 idsA #33 gadB 37 gadB #34 Rv3435c 221 hypothetical protein Rv3435c #35 glmS 21 glmS #36 fadD3 47 fadD3 #37 gltB 300 gltB Motif number 1 AGAAGCGTGGGCCTGGCCCCCCAACC 3 7 0 GCCTGGCCCC 0.799878 -294 ACCACGCTTGCGGCGGCGGGCGCGACGATC 3 99 0 CGGCGGCGGG 0.987338 -202 CTGTTGCTGGGCGCGGCCGCGATCTTCGGA 3 136 1 GCGCGGCCGC 0.931799 -165 AACCGCCACTCCCCGGGGGCGATCCGTCGT 3 194 1 CCCCGGGGGC 0.518401 -107 ACCGTAGCTAGCCCCGCGACCCGGGCGCCG 3 254 1 GCCCCGCGAC 0.621229 -47 CCTCAGCCTGCGGCGCCCGGGTCGCGGGGC 3 264 0 CGGCGCCCGG 0.975 -37 CTGCGACCCGGAGGCCGCCTCAGCCTGC 3 283 0 CGGAGGCCGC 0.96427 -18 GCACCGAACACGGACGCGGCCTCAACCGAT 6 60 0 CGGACGCGGC 0.928782 -126 GTGTTCGGTGCGGAACCCGCCGGCCCCGGG 6 79 1 CGGAACCCGC 0.585593 -107 GAACCCGCCGGCCCCGGGGCGCCGTTAGGG 6 91 1 GCCCCGGGGC 0.494658 -95 CGCCGTTAGGGGATGGCCGCATTAGGGGAA 6 110 1 GGATGGCCGC 0.74505 -76 GGGAAATGCGGGGCTGCGGGACGGGCTGGG 6 135 1 GGGCTGCGGG 0.958263 -51 GCTGCGGGACGGGCTGGGGCTATGGTGAGG 6 147 1 GGGCTGGGGC 0.922186 -39 GGCTGGTCGGCGGCGGCTCCCTCACCA 6 169 0 CGGCGGCGGC 0.989922 -17 CACAGATCGCGGGTCGGCGCAGGTTGACCG 7 61 1 GGGTCGGCGC 0.908319 -240 TGTATGGACCCCGCGCCAGCGCGGTCAACC 7 82 0 CCGCGCCAGC 0.952094 -219 GCAACAACCAGGTTTCCGGCCGATGTTCTT 7 164 0 GGTTTCCGGC 0.689364 -137 ACTTGACATGGCGCGGCCGCAACAACCAGG 7 182 0 GCGCGGCCGC 0.931799 -119 CGGGTTGTATGCGAGCCCAGTTCCGAACTG 7 213 0 GCGAGCCCAG 0.622501 -88 CAGCAGCGGCGCTTGGCCGCCATCTGGATG 7 253 1 GCTTGGCCGC 0.824287 -48 TGGTGTGTGAGGGTGGCGCCGGGGTGCCCG 8 35 1 GGGTGGCGCC 0.927248 -52 AGACTAGGTCCCGTACCGGCACCCTAACAG 9 63 1 CCGTACCGGC 0.839698 -94 CCAACAGGTTGGCCGGGGGCCCTGTTAGGG 9 84 0 GGCCGGGGGC 0.651544 -73 GCGACGATGCGCGCCGCAGCGATACCTTGC 9 118 0 GCGCCGCAGC 0.876055 -39 CGGCGCGCATCGTCGCCCGGATAGGCTCGA 9 132 1 CGTCGCCCGG 0.821278 -25 GCCTCAGCAGGGCCCGGAGGAAGCCTTGGC 10 136 1 GGCCCGGAGG 0.540968 -77 GCCGGCTGGGGGCAGCACCCGCT 11 4 1 GGCTGGGGGC 0.961505 -29 GGGCAGCACCCGCTCGCGGCGGA 11 20 1 CGCTCGCGGC 0.955399 -13 CATTTGCGATGCCTGGGCGGGGATGCTGGC 12 61 1 GCCTGGGCGG 0.843082 -24 GCCTGCCAGCATCCCCGCCC 12 75 0 GCCTGCCAGC 0.936205 -10 ACCGTTCCGAGAAAGGCCAGC 13 2 1 CCGTTCCGAG 0.575483 -20 CATGAACATCGCGAGGCCGGTTCTTCGTGG 14 15 1 GCGAGGCCGG 0.949084 -286 GCAGTCCCTTGGGATCCCGGCACGTTACCA 14 42 0 GGGATCCCGG 0.852152 -259 CAACCAAATTCGCTTCCGGCAGTCCCTTGG 14 60 0 CGCTTCCGGC 0.946458 -241 TTGGTTGCGCCGCTTGGGGCGTCGCGAGAG 14 83 1 CGCTTGGGGC 0.848202 -218 CAGGGCGTAGGCGCTGCGGCGTGCACGGCT 14 149 1 GCGCTGCGGC 0.963905 -152 TGATCGTTCGCCGACGCAGCATCTGCTGGG 15 23 0 CCGACGCAGC 0.669689 -278 TTGGACTTTGCGCCGGCGAGACGCGCCGAC 15 119 1 CGCCGGCGAG 0.796973 -182 GTTTGTTGCGGCGTCGGCGCGTCTCGCCGG 15 131 0 GCGTCGGCGC 0.848706 -170 CAGCGAGTACGGGTCGGCGCAGGGTTTGTT 15 154 0 GGGTCGGCGC 0.908319 -147 CAGCACGTTTGCGTGCCGCGTCTCAATCTA 15 187 0 GCGTGCCGCG 0.903155 -114 TGGAGCGCACCGGTGTCGGGCTCGTCTTGG 15 225 0 CGGTGTCGGG 0.593502 -76 CGACACCGGTGCGCTCCAGCCCTGCCCACC 15 237 1 GCGCTCCAGC 0.856912 -64 TCGTGGCGAACCGCGCCAGGTGGGCAGGGC 15 255 0 CCGCGCCAGG 0.939044 -46 AGCTTGTCAGCGGCGCCCGGAGTGGTATCG 16 30 0 CGGCGCCCGG 0.975 -55 GAACAGCGATGGGAGGGCGGAT 16 73 1 GGGAGGGCGG 0.889527 -12 GCGCGGCTACGCGCGGCAAGCATCG 17 6 0 GCGCGGCAAG 0.547925 -49 CCGCGCGTAGCCGCGCGAGCTGATCCGCGC 17 20 1 CCGCGCGAGC 0.567299 -35 GGCTCCGATGGGGCGCCGGCTGGCGGCTCT 18 12 0 GGGCGCCGGC 0.983751 -289 GGCGCCCCATCGGAGCCAGCGAACCCGGTC 18 25 1 CGGAGCCAGC 0.902893 -276 CAAGACGCTGGGCTTGCCGGACACCGGACC 18 51 0 GGCTTGCCGG 0.886543 -250 CCCACAATAGGGCCGGGGAGACCCGGCGTC 18 178 1 GGCCGGGGAG 0.629954 -123 ACGTTACTGACCGTGCCGCCCACCACTGAC 18 205 0 CCGTGCCGCC 0.918741 -96 GGCTCCATAGCGTCGGCCGCGGATACAGTA 18 269 1 CGTCGGCCGC 0.841555 -32 CCGCGCACTCCCCTTGCGGGCCGCCCCGCA 19 16 1 CCCTTGCGGG 0.898745 -79 CCGGCCAGAAGCGTTGCGGGGCGGCCCGCA 19 30 0 GCGTTGCGGG 0.946324 -65 TGTTACCGATGCCCGGCCAGAAGCGTTGCG 19 42 0 GCCCGGCCAG 0.710221 -53 AGGGGTGGACGGCATCGGGGATCGCCCTCG 21 25 1 GGCATCGGGG 0.661619 -276 ATCGGGGATCGCCCTCGGGCGATGGCCAAG 21 38 1 GCCCTCGGGC 0.79847 -263 GGCACCCCGTCCACGCCGGCATGGTGCACC 21 67 0 CCACGCCGGC 0.814978 -234 GGCGTGGACGGGGTGCCAGCGCCAACCTGA 21 80 1 GGGTGCCAGC 0.968089 -221 GGGCGCGTCGGCCTCGGCGGTGCACAACTG 21 115 0 GCCTCGGCGG 0.730882 -186 ACCCGTCGACCGGATCCGGCACGGGCGCGT 21 137 0 CGGATCCGGC 0.91496 -164 ACTAACCGGCCGCTGCCAGCAGTCCTGCCA 21 231 0 CGCTGCCAGC 0.938556 -70 AGTCGGCCGACGGTGGCCGCTGGCCAGGAT 21 258 1 CGGTGGCCGC 0.987178 -43 ATTGCGATCACGGTGCCAGGCCTACCCGCG 22 32 1 CGGTGCCAGG 0.950452 -135 ACCAGGTGCGCGGCCCGCGGGTAGGCCTGG 22 47 0 CGGCCCGCGG 0.559972 -120 CGTCCAGTCTGGCAGGCCGGAAACATCGGT 22 93 1 GGCAGGCCGG 0.927559 -74 ATGTGAACCGGCGAGCCGGGTGAGGAGGAT 22 145 1 GCGAGCCGGG 0.971602 -22 TTGGCTGCGCCGCTCCCAGGTTATCCCGAC 23 30 1 CGCTCCCAGG 0.775782 -177 GTCTTGGGTTGGCTGCCCCGCGCTGCACAG 23 101 0 GGCTGCCCCG 0.806316 -106 GCACATTGTGGGCTTCGGGGTAATTGTCTT 23 126 0 GGCTTCGGGG 0.848134 -81 CAATGTGCGTCCCTGGCCGCCATAGAATCC 23 148 1 CCCTGGCCGC 0.973502 -59 AGAACATGATGGGCACCAGCGCCCATCATG 25 27 1 GGGCACCAGC 0.589795 -133 CGCGAACCGCCGGAGCCGGCGAGTAGACGC 25 64 0 CGGAGCCGGC 0.980496 -96 CGGCGGTTCGCGGTGCCCGCGACAGCCAGC 25 82 1 CGGTGCCCGC 0.98933 -78 ACCATCTATAGGCTCCGGGCCCACATGCTG 25 108 0 GGCTCCGGGC 0.904123 -52 TCCTCCCACACCATGGCCGCTAGTCAACCA 25 134 0 CCATGGCCGC 0.68311 -26 CAAATTTTGGCCGCGCCCGGCTA 26 4 0 CCGCGCCCGG 0.883354 -38 AATTCCTGGGCGGTGCGCAGGGGACGTTGT 27 68 1 CGGTGCGCAG 0.652158 -233 GACATCTGCTGGGCTGCGGCTTGCTGCCGG 27 149 1 GGGCTGCGGC 0.969501 -152 AGAGCGGGAGGCGTTCCGGCAGCAAGCCGC 27 164 0 GCGTTCCGGC 0.967303 -137 CCATCGGGCCCCGTGCCGGGTGACTGTGCC 28 22 0 CCGTGCCGGG 0.98824 -254 CCCTGCCGGGCGCTGCGGGCCCTCACCATC 28 47 0 CGCTGCGGGC 0.955516 -229 GGCAATCAGACCCTGCCGGGCGCTGCGGGC 28 57 0 CCCTGCCGGG 0.979814 -219 CCTCATCGGGCCGTGCCGGCCCGAATCGTC 28 92 1 CCGTGCCGGC 0.991279 -184 GGCAATCAGACCCTGCCGGGCGACGATTCG 28 113 0 CCCTGCCGGG 0.979814 -163 CCTCATCGGGCCGTGCCGGCCCGAATCGTC 28 148 1 CCGTGCCGGC 0.991279 -128 CTTAGCCGGGCCCTGCCGGGCGACGATTCG 28 169 0 CCCTGCCGGG 0.979814 -107 AAAAGCGACACCGTCCGGGCTGGCGATTCG 28 220 0 CCGTCCGGGC 0.868549 -56 GGCGAGCTGGGCGAGCCGAGTGAG 28 262 1 GCGAGCCGAG 0.717463 -14 GGCGGATCCTTTCCGGGCTTGTTGCGG 33 21 0 CCTTTCCGGG 0.541749 -17 GAGTGTCTTGGGCCGCCAGGTCCCGTACCG 34 24 0 GGCCGCCAGG 0.931062 -198 GATCCACGTGGCGACCGCGGAGACGTTGGG 34 59 1 GCGACCGCGG 0.640483 -163 CGGAGACGTTGGGTGCGGAGTTGACGGCGA 34 76 1 GGGTGCGGAG 0.767329 -146 ACAATCACGTGGCCTGGCGGTGGCATCCGC 34 140 1 GGCCTGGCGG 0.762889 -82 GCTGACGGAGGGGTCCCGCGGTTACAATTT 34 168 1 GGGTCCCGCG 0.777709 -54 GCCCACTTGTGCGTTCCGGCCCGGAAATTG 34 192 0 GCGTTCCGGC 0.967303 -30 CTCGCTACCCGCCCACTTGTGC 34 210 0 CGCTACCCGC 0.698948 -12 TCGGTTGCTGGCCACGCGGCAGCTACGGTG 37 27 1 GCCACGCGGC 0.878085 -274 GCGGCAGCTACGGTGCCGCCGGCTGACGAG 37 42 1 CGGTGCCGCC 0.931104 -259 GGGCGTGATCCGGTCGGGGCTTCGTCCGTG 37 164 0 CGGTCGGGGC 0.93223 -137 CGCACCCGGAGGTAGCGGGCAAGACCCCTT 37 223 0 GGTAGCGGGC 0.580154 -78 CGCTACCTCCGGGTGCGGCCCCGTCGAATC 37 236 1 GGGTGCGGCC 0.842424 -65 CAGACTTTCTGCGCGGCCGCCTTTGCGGAT 37 263 0 GCGCGGCCGC 0.931799 -38 ********** Masking position 9 Map Score: 181.064 Number of sites scoring better than the average of aligned sites = 105145 Number in coding regions = 98709 Number in noncoding regions = 6436 Number of orfs with sites within 600 bp upstream = 1635 Fraction of orfs with sites within 600 bp upstream = 0.262608 Motif number 2 ********** No masking Map Score: 4.90518e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 3 GGTTGGGGGGCCAGGCCCACGCTTCTGC 3 9 1 GGCCAGGCCC 0.865309 -292 TCAAGCCGCACCCACAGCCGTCGAGGAGCC 3 57 1 CCCACAGCCG 0.812101 -244 GATCGTCGCGCCCGCCGCCGCAAGCGTGGT 3 99 1 CCCGCCGCCG 0.985233 -202 CGAAGATCGCGGCCGCGCCCAGCAACAGAC 3 134 0 GGCCGCGCCC 0.987684 -167 ACAAGAAACCGCCACTCCCCGGGGGCGATC 3 188 1 GCCACTCCCC 0.587074 -113 CCGTAGCTAGCCCCGCGACCCGGGCGCCGC 3 255 1 CCCCGCGACC 0.624405 -46 CCGCGACCCGGGCGCCGCAGGCTGAGGCGG 3 267 1 GGCGCCGCAG 0.965715 -34 CCGCCTCCTTGCCCCACCCCCGTTAGTCCC 6 14 1 GCCCCACCCC 0.881026 -172 TATCGGTTGAGGCCGCGTCCGTGTTCGGTG 6 59 1 GGCCGCGTCC 0.423273 -127 TGCGGAACCCGCCGGCCCCGGGGCGCCGTT 6 87 1 GCCGGCCCCG 0.977519 -99 CCCCTAATGCGGCCATCCCCTAACGGCGCC 6 108 0 GGCCATCCCC 0.785936 -78 CATAGCCCCAGCCCGTCCCGCAGCCCCGCA 6 141 0 GCCCGTCCCG 0.96655 -45 TGGTGAGGGAGCCGCCGCCGACCAGCC 6 169 1 GCCGCCGCCG 0.991069 -17 GGTCAACCTGCGCCGACCCGCGATCTGTGA 7 60 0 CGCCGACCCG 0.930203 -241 TCTGTATGGACCCCGCGCCAGCGCGGTCAA 7 84 0 CCCCGCGCCA 0.95099 -217 TGGTTGTTGCGGCCGCGCCATGTCAAGTTC 7 184 1 GGCCGCGCCA 0.972021 -117 TCGCATACAACCCGATCCCAGTCTCAGCAG 7 229 1 CCCGATCCCA 0.429098 -72 GCGGCCAAGCGCCGCTGCTGAGACTGGGAT 7 243 0 GCCGCTGCTG 0.837965 -58 ACACACCATAGCCGCAGCTCAGCACGCCGG 8 13 0 GCCGCAGCTC 0.631397 -74 TGTCGGGCACCCCGGCGCCACCCTCACACA 8 38 0 CCCGGCGCCA 0.944083 -49 GCGCCGGGGTGCCCGACACGTAAGCCGAAT 8 50 1 GCCCGACACG 0.426271 -37 AGCCGAATTCGGCGGTGCAGACGTC 8 72 1 GGCGGTGCAG 0.954648 -15 CCTAACAGGGCCCCCGGCCAACCTGTTGGT 9 85 1 CCCCCGGCCA 0.821725 -72 GGCGACGATGCGCGCCGCAGCGATACCTTG 9 119 0 CGCGCCGCAG 0.944246 -38 GCTTCCTCCGGGCCCTGCTGAGGCAATGCG 10 130 0 GGCCCTGCTG 0.864837 -83 GCGGGTGCTGCCCCCAGCCGGC 11 3 0 CCCCCAGCCG 0.969318 -30 CTGCCAGCATCCCCGCCCAGGCATCGCAAA 12 63 0 CCCCGCCCAG 0.876318 -22 ACATGAACATCGCGAGGCCGGTTCTTCGTG 14 14 1 CGCGAGGCCG 0.878567 -287 CCGAATCTCTCGCGACGCCCCAAGCGGCGC 14 89 0 CGCGACGCCC 0.916267 -212 CGAGAGATTCGGCAATCCCCTGGCTGGAGG 14 107 1 GGCAATCCCC 0.334391 -194 CCAAGCCGTGCACGCCGCAGCGCCTACGCC 14 152 0 CACGCCGCAG 0.717253 -149 CGGGTTGTGGGGCCAAGCCGTGCACGCCGC 14 164 0 GGCCAAGCCG 0.948892 -137 CATCAGCAAACCCCCAGCAGATGCTGCGTC 15 11 1 CCCCCAGCAG 0.881646 -290 TTGATCGTTCGCCGACGCAGCATCTGCTGG 15 24 0 GCCGACGCAG 0.895708 -277 CCGGCGCAAAGTCCAAGCCGCGGGTCATTG 15 105 0 GTCCAAGCCG 0.588854 -196 GGCGCGTCTCGCCGGCGCAAAGTCCAAGCC 15 116 0 GCCGGCGCAA 0.868785 -185 GGCGAGACGCGCCGACGCCGCAACAAACCC 15 133 1 GCCGACGCCG 0.973278 -168 ACAAACCCTGCGCCGACCCGTACTCGCTGC 15 155 1 CGCCGACCCG 0.930203 -146 CCGACCCGTACTCGCTGCACTAGATTGAGA 15 167 1 CTCGCTGCAC 0.259887 -134 ACTAGATTGAGACGCGGCACGCAAACGTGC 15 185 1 GACGCGGCAC 0.375828 -116 GCTGTTATCAGCCCAAGACGAGCCCGACAC 15 213 1 GCCCAAGACG 0.383607 -88 GCGCCAGGTGGGCAGGGCTGGAGCGCACCG 15 243 0 GGCAGGGCTG 0.375301 -58 TACCACTCCGGGCGCCGCTGACAAGCTCTA 16 33 1 GGCGCCGCTG 0.905916 -52 ATCCGCCCTCCCATCGCTGTTCG 16 72 0 CGCCCTCCCA 0.739121 -13 CGCGCGGCTACGCGCGGCAAGCATCG 17 7 0 CGCGCGGCAA 0.504472 -48 CGAGCTGATCCGCGCTGCAGAATGACTGCC 17 35 1 CGCGCTGCAG 0.907344 -20 AGAGCCGCCAGCCGGCGCCCCATCGGAGCC 18 12 1 GCCGGCGCCC 0.985221 -289 GCCGTCATCGGGCAGACCCGATAACCAGGT 18 105 1 GGCAGACCCG 0.752009 -196 AGACGTTACTGACCGTGCCGCCCACCACTG 18 207 0 GACCGTGCCG 0.938899 -94 TGTATCCGCGGCCGACGCTATGGAGCCGAT 18 266 0 GCCGACGCTA 0.364991 -35 ACTCACCGCGCACTCCCCTTGCG 19 4 1 CACCGCGCAC 0.636574 -91 TCCCCTTGCGGGCCGCCCCGCAACGCTTCT 19 24 1 GGCCGCCCCG 0.981576 -71 TGTTACCGATGCCCGGCCAGAAGCGTTGCG 19 42 0 GCCCGGCCAG 0.783453 -53 GAGGGCGATCCCCGATGCCGTCCACCCCTT 21 24 0 CCCGATGCCG 0.926807 -277 CTGGCACCCCGTCCACGCCGGCATGGTGCA 21 69 0 GTCCACGCCG 0.776584 -232 TGGACGGGGTGCCAGCGCCAACCTGATGTC 21 84 1 GCCAGCGCCA 0.815329 -217 CGTCGGCCTCGGCGGTGCACAACTGCGACA 21 110 0 GGCGGTGCAC 0.907279 -191 AGGCCGACGCGCCCGTGCCGGATCCGGTCG 21 131 1 GCCCGTGCCG 0.989616 -170 CCGGGCAAGACACCGACCCGTCGACCGGAT 21 152 0 CACCGACCCG 0.666237 -149 CGAACTCGTCGGCCATCCCCCATACGTCCG 21 191 0 GGCCATCCCC 0.785936 -110 CGACTAACCGGCCGCTGCCAGCAGTCCTGC 21 233 0 GCCGCTGCCA 0.926262 -68 AATGCTGCCAGAGCAGACCCGAGATC 21 285 0 GCCAGAGCAG 0.686586 -16 GTATTGCGATCACGGTGCCAGGCCTACCCG 22 30 1 CACGGTGCCA 0.611501 -137 CCTACCCGCGGGCCGCGCACCTGGTAACAG 22 52 1 GGCCGCGCAC 0.951076 -115 AGTCCAGTGTGCCCGTCCAGTCTGGCAGGC 22 80 1 GCCCGTCCAG 0.872014 -87 ACCTGGGAGCGGCGCAGCCAAGGAAGGAAC 23 21 0 GGCGCAGCCA 0.905979 -186 GGGTTGGCTGCCCCGCGCTGCACAGGGTTA 23 96 0 CCCCGCGCTG 0.888747 -111 AGACAATTACCCCGAAGCCCACAATGTGCG 23 127 1 CCCGAAGCCC 0.807476 -80 ACCGCGAACCGCCGGAGCCGGCGAGTAGAC 25 66 0 GCCGGAGCCG 0.983358 -94 TCCGGCGGTTCGCGGTGCCCGCGACAGCCA 25 80 1 CGCGGTGCCC 0.961413 -80 CATCTATAGGCTCCGGGCCCACATGCTGGC 25 106 0 CTCCGGGCCC 0.540085 -54 GGCAAATTTTGGCCGCGCCCGGCTA 26 6 0 GGCCGCGCCC 0.987684 -36 TGTCTCGTCGGGCCGTGACGCAAAGAACTC 27 34 1 GGCCGTGACG 0.787304 -267 ACGTCCCCTGCGCACCGCCCAGGAATTGCG 27 65 0 CGCACCGCCC 0.839995 -236 AGCCCCGCTTGACGCAGCCAGTTACTGAGG 27 119 1 GACGCAGCCA 0.590706 -182 CCGGCAGCAAGCCGCAGCCCAGCAGATGTC 27 149 0 GCCGCAGCCC 0.95506 -152 ACTTCGCCTACCCCCCGCAACTTACCGCTG 27 242 0 CCCCCCGCAA 0.779734 -59 CACCATCGGGCCCCGTGCCGGGTGACTGTG 28 24 0 CCCCGTGCCG 0.982847 -252 GACCCTGCCGGGCGCTGCGGGCCCTCACCA 28 49 0 GGCGCTGCGG 0.565364 -227 CCGGCAATCAGACCCTGCCGGGCGCTGCGG 28 59 0 GACCCTGCCG 0.922419 -217 CTCCTCATCGGGCCGTGCCGGCCCGAATCG 28 90 1 GGCCGTGCCG 0.990296 -186 CCGGCAATCAGACCCTGCCGGGCGACGATT 28 115 0 GACCCTGCCG 0.922419 -161 CTCCTCATCGGGCCGTGCCGGCCCGAATCG 28 146 1 GGCCGTGCCG 0.990296 -130 AGCTTAGCCGGGCCCTGCCGGGCGACGATT 28 171 0 GGCCCTGCCG 0.987544 -105 TCGGTCGAATCGCCAGCCCGGACGGTGTCG 28 215 1 CGCCAGCCCG 0.715967 -61 TCACTCGGCTCGCCCAGCTCGCCGTCGATG 28 255 0 CGCCCAGCTC 0.560304 -21 CTATCGCAACGGCAGTGCCGC 30 2 0 GGCAGTGCCG 0.933496 -29 TACGGGACCTGGCGGCCCAAGACACTCGAC 34 27 1 GGCGGCCCAA 0.683651 -195 AGACACTCGACGCGATCCACGTGGCGACCG 34 46 1 CGCGATCCAC 0.311767 -176 ACGTGGCGACCGCGGAGACGTTGGGTGCGG 34 64 1 CGCGGAGACG 0.579867 -158 GTCAGCGGATGCCACCGCCAGGCCACGTGA 34 144 0 GCCACCGCCA 0.773547 -78 GGTTGCTGGCCACGCGGCAGCTACGGTGCC 37 29 1 CACGCGGCAG 0.437832 -272 CTCGTCAGCCGGCGGCACCGTAGCTGCCGC 37 42 0 GGCGGCACCG 0.628785 -259 TCGGGGCTTCGTCCGTGCAGCAGTGAACGC 37 151 0 GTCCGTGCAG 0.651111 -150 ATTCGACGGGGCCGCACCCGGAGGTAGCGG 37 235 0 GCCGCACCCG 0.93271 -66 CCGCAAAGGCGGCCGCGCAGAAAGTCTGCT 37 265 1 GGCCGCGCAG 0.976643 -36 ********** Masking position 3 Map Score: 160.591 Number of sites scoring better than the average of aligned sites = 69731 Number in coding regions = 65678 Number in noncoding regions = 4053 Number of orfs with sites within 600 bp upstream = 1430 Fraction of orfs with sites within 600 bp upstream = 0.229682 Motif number 4 GTTCGTCGGGAGCTAATCGGCCCGT 1 6 0 GGGATAACGG 0.16664 -20 GTTCATCGGTGGCTCCTCGACGGCTGTGGGTGC 3 64 0 GGCTTCGCGG 0.951516 -237 CCACCGATGAACCGGATCGTCGCGCCCGCCGCC 3 85 1 ACCGTCGCGC 0.938902 -216 ACTCCCCGGGGGCGATCCGTCGTCATCAGTGCT 3 201 1 GGCGCCGCGT 0.573913 -100 GCCTGCGGCGCCCGGGTCGCGGGGCTAGCTACG 3 256 0 CCCGTCGGGG 0.824975 -45 GAACACGGACGCGGCCTCAACCGATAGCATCGT 6 52 0 GCGGTCACCG 0.330765 -134 TAACGGCGCCCCGGGGCCGGCGGGTTCCGCACC 6 85 0 CCGGCCGCGG 0.989124 -101 GGGCGCCGTTAGGGGATGGCCGCATTAGGGGAA 6 107 1 AGGGTGGCGC 0.751063 -79 GGCTGGTCGGCGGCGGCTCCCTC 6 173 0 GGCTTCGCGG 0.951705 -13 TCTCACAGATCGCGGGTCGGCGCAGGTTGACCG 7 58 1 CGCGTCGCGC 0.988387 -243 CTGTATGGACCCCGCGCCAGCGCGGTCAACCTG 7 80 0 CCCGCCACGC 0.889756 -221 TCTCAGCAGCGGCGCTTGGCCGCCATCTGGATG 7 250 1 GGCGTGGCGC 0.902724 -51 TTACGTGTCGGGCACCCCGGCGCCACCCTCACA 8 40 0 GGCACCGCGC 0.827786 -47 GACACGTAAGCCGAATTCGGCGGTGCAGACGTC 8 64 1 CCGATCGCGG 0.945055 -23 TGCCCAACCAACAGGTTGGCCGGGGGCCCTGTT 9 88 0 ACAGTGGCGG 0.312737 -69 ATCGCTGCGGCGCGCATCGTCGCCCGGATAGGC 9 125 1 CGCGTCGCGC 0.98837 -32 CCGGGCAGCATAGACGGCAAGCCGGAT 10 5 1 GCAGTAGCGG 0.442339 -208 CCGTTCAGCCAGGGCGTAGGCGCTGCGGCGTGC 14 140 1 AGGGTAGCGC 0.65186 -161 TGGGGCCAAGCCGTGCACGCCGCAGCGCCTACG 14 154 0 CCGTACGCGC 0.339253 -147 GCGGCTTGATCGTTCGCCGACGCAGCATCTGCT 15 26 0 CGTTCCGCGC 0.349916 -275 GCGGCGTCGGCGCGTCTCGCCGGCGCAAAGTCC 15 121 0 CGCGTCGCGG 0.993838 -180 GCCCACCTGGCGCGGTTCGCCACGACAGCCTTA 15 260 1 CGCGTCGCAC 0.652576 -41 TCGATGCTAGAGCTTGTCAGCGGCGCCCGGAGT 16 37 0 AGCTTCACGG 0.50914 -48 CGATGCTTGCCGCGCGTAGCCGCGCGAGCTGAT 17 11 1 CGCGTAGCGC 0.902332 -44 GCCGCCAGCCGGCGCCCCATCGGAGCCAGCGAA 18 15 1 GGCGCCACGG 0.916355 -286 GGACACCGGACCGGGTTCGCTGGCTCCGATGGG 18 30 0 CCGGTCGTGG 0.617373 -271 CAGCGTCTTGCCGGGATAGTCGGGCGGCGATTT 18 71 1 CCGGTAGCGG 0.938852 -230 CCCGATGACGGCGAAATCGCCGCCCGACTATCC 18 84 0 GCGATCGCGC 0.835074 -217 GTTCCCGTTCGGCATGCCACCGGTTACGATCTT 18 133 1 GGCACCACGG 0.585846 -168 CCACTGACGCCGGGTCTCCCCGGCCCTATTGTG 18 180 0 CGGGTCCCGG 0.761966 -121 TTTACTGTATCCGCGGCCGACGCTATGGAGCCG 18 268 0 CCGCCCGCGC 0.711112 -33 CGCCCCGCAACGCTTCTGGCCGGGCATCGGTAA 19 37 1 CGCTTGGCGG 0.862537 -58 GCGCCGTCACAGGTATTCGCCGGTGAGACG 20 42 1 AGGTTCGCGG 0.864552 -20 GTGCACCATGCCGGCGTGGACGGGGTGCCAGCG 21 68 1 CCGGTGGCGG 0.61766 -233 TTGTGCACCGCCGAGGCCGACGCGCCCGTGCCG 21 118 1 CCGACCGCGC 0.864084 -183 CGGGCAAGACACCGACCCGTCGACCGGATCCGG 21 148 0 ACCGCCGCGA 0.422628 -153 ATCGCCGATGGCGAACTCGTCGGCCATCCCCCA 21 199 0 GCGATCGCGG 0.909618 -102 GCTGGCAGCGGCCGGTTAGTCGGCCGACGGTGG 21 241 1 GCCGTAGCGG 0.908812 -60 TCCTGGCCAGCGGCCACCGTCGGCCGACTAACC 21 254 0 CGGCCCGCGG 0.850772 -47 TTACCAGGTGCGCGGCCCGCGGGTAGGCCTGGC 22 46 0 CGCGCCGGGG 0.807282 -121 TTCCGGCCTGCCAGACTGGACGGGCACACTGGA 22 82 0 CCAGTGGCGG 0.685796 -85 GTCTGGCAGGCCGGAAACATCGGTCAGCAGATA 22 99 1 CCGGACACGG 0.495242 -68 ATCCTCCTCACCCGGCTCGCCGGTTCACATCGC 22 142 0 CCCGTCGCGG 0.992354 -25 CCAAGAAGAACCGGACTGGGCGGATAGTGCGGA 23 175 0 CCGGTGGCGG 0.961254 -32 CGCGAGTAGGCGCAAAAGAACAT 25 1 1 CGCGTAGCGC 0.908076 -159 CGCCGGAGCCGGCGAGTAGACGCGAAAGAACAT 25 54 0 GGCGTAGCGC 0.852597 -106 TCGCGGGCACCGCGAACCGCCGGAGCCGGCGAG 25 71 0 CGCGCCGCGG 0.992163 -89 AGGTTCTGCCCCTGTCTCGTCGGGCCGTGACGC 27 22 1 CCTGTCGCGG 0.862233 -279 AAGAGCGGGAGGCGTTCCGGCAGCAAGCCGCAG 27 162 0 GGCGCCGCAG 0.620508 -139 GAACGCCTCCCGCTCTTCGTCGGAAAGGATTAC 27 178 1 CGCTTCGCGG 0.970989 -123 CTAAACTGCTAGGTTTTCGGCGGCCTTTCAACA 27 211 1 AGGTTCGCGG 0.86455 -90 GGTAAGTTGCGGGGGGTAGGCGAAGTTCGCCGT 27 246 1 GGGGTAGCGA 0.251326 -55 GAGTTCTGGCACGGCTTCAACGGCGAACTTCGC 27 265 0 ACGGTCACGG 0.802252 -36 GCGCTGCGGGCCCTCACCATCGGGCCCCGTGCC 28 35 0 CCCTCCACGG 0.762667 -241 GGCAATCAGACCCTGCCGGGCGCTGCGGGCCCT 28 54 0 CCCTCGGCGC 0.671106 -222 CTGATTGCCGGGCTCCTCATCGGGCCGTGCCGG 28 78 1 GGCTTCACGG 0.744352 -198 GCCGTGCCGGCCCGAATCGTCGCCCGGCAGGGT 28 101 1 CCCGTCGCGC 0.986613 -175 CTGATTGCCGGGCTCCTCATCGGGCCGTGCCGG 28 134 1 GGCTTCACGG 0.744352 -142 GCCGTGCCGGCCCGAATCGTCGCCCGGCAGGGC 28 157 1 CCCGTCGCGC 0.986613 -119 TGAGCTTAGCCGGGCCCTGCCGGGCGACGATTC 28 170 0 CGGGCTGCGG 0.761981 -106 CGTCCGGGCTGGCGATTCGACCGATACGCATTT 28 206 0 GGCGTCGCCG 0.831501 -70 GTCGCTTTTGCCAGCATCGACGGCGAGCTGGGC 28 241 1 CCAGTCGCGG 0.92073 -35 GCTCACGGTACGGGACCTGGCGGCCCAAGACAC 34 19 1 CGGGCTGCGG 0.768235 -203 TTCCTGTGGTAGGTGATCATCGCCGTCAACTCC 34 92 0 AGGTTCACGC 0.321469 -130 CCTCCGTCAGCGGATGCCACCGCCAGGCCACGT 34 146 0 CGGACCACGC 0.522671 -76 GCATGTGACGATACGGTCGGTTGCTGGCCA 37 8 1 ACGACGGCGG 0.333927 -293 CGCGGCAGCTACGGTGCCGCCGGCTGACGAGTT 37 41 1 ACGGCCGCGG 0.951811 -260 TGATCCGGTCGGGGCTTCGTCCGTGCAGCAGTG 37 156 0 GGGGTCGCCG 0.815471 -145 GGCCGCCTTTGCGGATTCGACGGGGCCGCACCC 37 246 0 GCGGTCGCGG 0.987109 -55 **** *** *** Masking position 11 Map Score: 124.742 Number of sites scoring better than the average of aligned sites = 43797 Number in coding regions = 41221 Number in noncoding regions = 2576 Number of orfs with sites within 600 bp upstream = 1169 Fraction of orfs with sites within 600 bp upstream = 0.187761 Motif number 5 GGCTGTGGGTGCGGCTTGAGAGGCTAGAGGCAAC 3 42 0 GCGTTGAGGC 0.826043 -259 CCGCCGCAAGCGTGGTGGTTGGTCTGTTGCTGGG 3 113 1 CGGTGGGGTC 0.800129 -188 TCGGAGTGACCCTGATGGTGCAGCAGGACAAGAA 3 161 1 CCGTGGCAGC 0.697344 -140 CCTGCGGCGCCCGGGTCGCGGGGCTAGCTACGGT 3 254 0 CCGTCGGGGC 0.879746 -47 AGGGGAAATGCGGGGCTGCGGGACGGGCTGGGGC 6 133 1 CGGCTGGGAC 0.855826 -53 GCGGCCAAGCGCCGCTGCTGAGACTGGGATCGGG 7 239 0 GCGTGCAGAC 0.295306 -62 TTCCGGCGTGCTGAGCTGCGGCTATG 8 3 1 CCGGTGGAGC 0.784788 -84 GAGGGTGGCGCCGGGGTGCCCGACACGTAAGCCG 8 43 1 CCGGTGCGAC 0.758075 -44 CCCCGGCCAACCTGTTGGTTGGGCAAGGTATCGC 9 96 1 CCGTGGGGGC 0.991595 -61 AGACGGCAAGCCGGATTGCTATGCAACTAGGTGC 10 22 1 CCGTTGATGC 0.588279 -191 TCCGCCGCGAGCGGGTGCTGCCCCCAGCCGG 11 12 0 CGGGGGCTGC 0.534352 -21 GCCAAACATTTGCGATGCCTGGGCGGGGATGCTG 12 55 1 TGGTGCGGGC 0.887588 -30 CGTAGGCGCTGCGGCGTGCACGGCTTGGCCCCAC 14 154 1 GCGGTGCGGC 0.798337 -147 TGGCATCAATACGGGTTGTGGGGCCAAGCCGTGC 14 171 0 ACGTTGGGGC 0.868654 -130 CGAAGAAATGCGGGTGTCTAGGGCACAGAGTATC 14 263 0 CGGGTCGGGC 0.97057 -38 CTAACAATGACCCGCGGCTTGGACTTTGCGCCGG 15 101 1 CCGGGCGGAC 0.843341 -200 GCGGCGTCGGCGCGTCTCGCCGGCGCAAAGTCCA 15 120 0 CGGCTCCGGC 0.873778 -181 ACCGGTGTCGGGCTCGTCTTGGGCTGATAACAGC 15 213 0 GGTGTCGGGC 0.320594 -88 CGTGGCGAACCGCGCCAGGTGGGCAGGGCTGGAG 15 250 0 CGGCAGGGGC 0.73583 -51 CGACTCGAACAGCGATGGGAGGGCGGAT 16 67 1 AGGTGGGGGC 0.864319 -18 GGACACCGGACCGGGTTCGCTGGCTCCGATGGGG 18 29 0 CCGTTCTGGC 0.750363 -272 GGCAAGACGCTGGGCTTGCCGGACACCGGACCGG 18 49 0 TGGTTGGGAC 0.688664 -252 AGCGTCTTGCCGGGATAGTCGGGCGGCGATTTCG 18 72 1 CGGTAGGGGC 0.893436 -229 GACCCGATAACCAGGTTCCCGTTCGGCATGCCAC 18 119 1 CCGTTCGTTC 0.122381 -182 GTCTCCCCGGCCCTATTGTGGGGCCATGGTCGGC 18 166 0 CCTTTGGGGC 0.894699 -135 GGAGACCCGGCGTCAGTGGTGGGCGGCACGGTCA 18 194 1 CGCGTGGGGC 0.607425 -107 CAGTCAACCCCGTGTTGCGCAGACGTTACTGACC 18 223 0 CGGTGCAGAC 0.670157 -78 GCCCCGCAACGCTTCTGGCCGGGCATCGGTAACA 19 38 1 GCTTGGGGGC 0.627898 -57 CCGGCGTGGACGGGGTGCCAGCGCCAACCTGATG 21 78 1 CGGTGCGCGC 0.632029 -223 GTTCGCCATCGGCGATGGCAGGACTGCTGGCAGC 21 216 1 GGGTGGGGAC 0.780207 -85 TGGACTGTTACCAGGTGCGCGGCCCGCGGGTAGG 22 52 0 CCGTGCGGCC 0.662206 -115 GTGTGCCCGTCCAGTCTGGCAGGCCGGAAACATC 22 86 1 CCGCTGAGGC 0.888155 -81 CACGATGACGTCCGCCTCCTGGGCCAGTAACCCT 23 69 1 TCGCTCGGGC 0.731437 -138 GGCGGATAGTGCGGATTCTATGGCGGCCAGGGAC 23 156 0 GCGTTCTGGC 0.373896 -51 AGGGGCAGAACCTGATTGGCAGGC 27 1 0 CCGTTGAGGC 0.959843 -300 AAAGAACTCGCGCAATTCCTGGGCGGTGCGCAGG 27 55 1 CGATTCGGGC 0.666479 -246 CGCTGTGCCTCGAGCTGCCTGAGCCCCGCTTGAC 27 98 1 CGGTGCGAGC 0.79222 -203 CGCAACTTACCGCTGTTGAAAGGCCGCCGAAAAC 27 223 0 CGTTTGAGGC 0.623788 -78 AGCGGTAAGTTGCGGGGGGTAGGCGAAGTTCGCC 27 243 1 TGGGGGAGGC 0.595754 -58 GAGTTCTGGCACGGCTTCAACGGCGAACTTCGCC 27 264 0 ACGTTCCGGC 0.548068 -37 CGGCACGGGGCCCGATGGTGAGGGCCCGCAGCGC 28 34 1 CCGTGGAGGG 0.352743 -242 CCCGGCAGGGTCTGATTGCCGGGCTCCTCATCGG 28 67 1 TCGTTGGGGC 0.935921 -209 GGCGACGATTCGGGCCGGCACGGCCCGATGAGGA 28 91 0 CGGCGGCGGC 0.925005 -185 CCCGGCAGGGTCTGATTGCCGGGCTCCTCATCGG 28 123 1 TCGTTGGGGC 0.935921 -153 GGCGACGATTCGGGCCGGCACGGCCCGATGAGGA 28 147 0 CGGCGGCGGC 0.925005 -129 GCATCGACGGCGAGCTGGGCGAGCCGAGTGAG 28 254 1 CGGTGGGAGC 0.871682 -22 ACTGCCGTTGCGATAGTCTCCGGCC 30 16 1 CGTGTCCGGC 0.436927 -15 TGACCAACACCGTAGTTGGAGGACGGC 31 12 1 CGATTGGGAC 0.358885 -17 TGGATCGCGTCGAGTGTCTTGGGCCGCCAGGTCC 34 31 0 CGGGTCGGGC 0.97057 -191 CGCCAGGCCACGTGATTGTGCGACAGCCGCCATC 34 125 0 CGGTTGCGAC 0.853745 -97 TATGACAAAACCCGCTTGACATGCCAACTTTCCC 37 80 0 CCGTTGATGC 0.588276 -221 ACTTGTCGAGTCCGATTCCAGGGCCAAGCGTTCA 37 124 1 TCGTTCGGGC 0.891276 -177 CCGGATCACGCCCGCTTGACGGACAGCCTATCGA 37 181 1 CCGTTGGGAC 0.948848 -120 ** * *** **** Masking position 14 Map Score: 65.869 Number of sites scoring better than the average of aligned sites = 18416 Number in coding regions = 17144 Number in noncoding regions = 1272 Number of orfs with sites within 600 bp upstream = 782 Fraction of orfs with sites within 600 bp upstream = 0.125602 Motif number 6 GGCTGTGGGTGCGGCTTGAGAGGCTAGAGG 3 46 0 GCGGCTTGAG 0.889315 -255 GACCAACCACCACGCTTGCGGCGGCGGGCG 3 107 0 CACGCTTGCG 0.337499 -194 CCGTACTCGACCCGGTTGAGCACTGATGAC 3 222 0 CCCGGTTGAG 0.669048 -79 CCTGCGGCGCCCGGGTCGCGGGGCTAGCTA 3 258 0 CCGGGTCGCG 0.902307 -43 TACCCGCCTCCTTGCCCCACCCCCGT 6 7 1 CCTCCTTGCC 0.29503 -179 TCACCGCCTTGGGAACTCAGGGA 7 4 1 CCGCCTTGGG 0.897869 -297 CTCACAGATCGCGGGTCGGCGCAGGTTGAC 7 59 1 GCGGGTCGGC 0.839233 -242 GCGGGTCGGCGCAGGTTGACCGCGCTGGCG 7 69 1 GCAGGTTGAC 0.328858 -232 GCAAGAGTTATCGCCTTGACCGCACAATTC 7 112 0 TCGCCTTGAC 0.446347 -189 TCTCAGCAGCGGCGCTTGGCCGCCATCTGG 7 250 1 GGCGCTTGGC 0.533922 -51 TAGCCGCAGCTCAGCACGCCGGAA 8 5 0 TCAGCACGCC 0.3829 -82 GCATAGCAATCCGGCTTGCCGTCTATGCTG 10 16 0 CCGGCTTGCC 0.979455 -197 GGGCTGCTGTCCACCTCGCCAAGGCTTCCT 10 153 0 CCACCTCGCC 0.798909 -60 GCCGGCTGGGGGCAGCACCCG 11 2 1 CCGGCTGGGG 0.896654 -31 GGGGGCAGCACCCGCTCGCGGCGGA 11 18 1 CCCGCTCGCG 0.972615 -15 CACGAAGAACCGGCCTCGCGATGTTCATGT 14 14 0 CGGCCTCGCG 0.455057 -287 ATTTGGTTGCGCCGCTTGGGGCGTCGCGAG 14 81 1 GCCGCTTGGG 0.934856 -220 TGCGGCGTGCACGGCTTGGCCCCACAACCC 14 163 1 ACGGCTTGGC 0.547196 -138 CCACTAATATGCGGCTTGATCGTTCGCCGA 15 39 0 GCGGCTTGAT 0.338904 -262 ACAATGACCCGCGGCTTGGACTTTGCGCCG 15 104 1 GCGGCTTGGA 0.412075 -197 CCAGCCCTGCCCACCTGGCGCGGTTCGCCA 15 252 1 CCACCTGGCG 0.411266 -49 TGCCCGCTTGAGGATTCTCCGA 16 3 1 CCCGCTTGAG 0.914243 -82 GCAGCGCGGATCAGCTCGCGCGGCTACGCG 17 23 0 TCAGCTCGCG 0.71321 -32 CGATGGGGCGCCGGCTGGCGGCTCTG 18 7 0 CCGGCTGGCG 0.909997 -294 GGCAAGCCCAGCGTCTTGCCGGGATAGTCG 18 63 1 GCGTCTTGCC 0.347289 -238 CGGCGAAATCGCCGCCCGACTATCCCGGCA 18 79 0 GCCGCCCGAC 0.52848 -222 AGGTTCCCGTTCGGCATGCCACCGGTTACG 18 131 1 TCGGCATGCC 0.653717 -170 CACCGCGCACTCCCCTTGCGGGCCGCCCCG 19 14 1 TCCCCTTGCG 0.587126 -81 CGAGGGCGATCCCCGATGCCGTCCACCCCT 21 25 0 CCCCGATGCC 0.264259 -276 CATCGGGGATCGCCCTCGGGCGATGGCCAA 21 37 1 CGCCCTCGGG 0.346427 -264 CCGGCATGGTGCACCTTGGCCATCGCCCGA 21 52 0 GCACCTTGGC 0.612335 -249 AACTGCGACATCAGGTTGGCGCTGGCACCC 21 90 0 TCAGGTTGGC 0.283722 -211 TCGACCGGATCCGGCACGGGCGCGTCGGCC 21 132 0 CCGGCACGGG 0.898245 -169 CCGTGCCGGATCCGGTCGACGGGTCGGTGT 21 143 1 TCCGGTCGAC 0.350273 -158 GCCGACGGTGGCCGCTGGCCAGGATCTCGG 21 263 1 GCCGCTGGCC 0.831642 -38 TACCAGGTGCGCGGCCCGCGGGTAGGCCTG 22 48 0 GCGGCCCGCG 0.78236 -119 ACCGATGTTTCCGGCCTGCCAGACTGGACG 22 93 0 CCGGCCTGCC 0.863239 -74 TCCTCCTCACCCGGCTCGCCGGTTCACATC 22 144 0 CCGGCTCGCC 0.982901 -23 CGTCTACTCGCCGGCTCCGGCGGTTCGCGG 25 65 1 CCGGCTCCGG 0.497793 -95 CGGGGCTCAGGCAGCTCGAGGCACAGCGAC 27 96 0 GCAGCTCGAG 0.725336 -205 CTGCCTGAGCCCCGCTTGACGCAGCCAGTT 27 112 1 CCCGCTTGAC 0.926376 -189 CTGCTGGGCTGCGGCTTGCTGCCGGAACGC 27 154 1 GCGGCTTGCT 0.590125 -147 GGTGACTGTGCCAGCATGGGTGG 28 4 0 CCAGCATGGG 0.666368 -272 GCACAGTCACCCGGCACGGGGCCCGATGGT 28 23 1 CCGGCACGGG 0.898245 -253 ACGATTCGGGCCGGCACGGCCCGATGAGGA 28 91 0 CCGGCACGGC 0.912469 -185 ACGATTCGGGCCGGCACGGCCCGATGAGGA 28 147 0 CCGGCACGGC 0.912469 -129 CTCGGCTCGCCCAGCTCGCCGTCGATGCTG 28 252 0 CCAGCTCGCC 0.940008 -24 CACCGTAGCTGCCGCGTGGCCAGCAACCGA 37 27 0 GCCGCGTGGC 0.453508 -274 TATGACAAAACCCGCTTGACATGCCAACTT 37 84 0 CCCGCTTGAC 0.926376 -217 GCGGGCGTGATCCGGTCGGGGCTTCGTCCG 37 166 0 TCCGGTCGGG 0.523749 -135 CCGGATCACGCCCGCTTGACGGACAGCCTA 37 181 1 CCCGCTTGAC 0.926376 -120 ********** Masking position 8 Map Score: 58.8477 Number of sites scoring better than the average of aligned sites = 25844 Number in coding regions = 23984 Number in noncoding regions = 1860 Number of orfs with sites within 600 bp upstream = 1018 Fraction of orfs with sites within 600 bp upstream = 0.163508 Motif number 7 AGGAGCCACCGATGAACCGGATCGTCGCGC 3 80 1 GATGAACCGG 0.870874 -221 TTGGTCTGTTGCTGGGCGCGGCCGCGATCT 3 131 1 GCTGGGCGCG 0.673099 -170 CAGATGTCAGGATGAGCAGGTTATGCAGGG 5 54 1 GATGAGCAGG 0.891028 -55 GCTAACACGGGACTAACGGGGGTGGGGCAA 6 22 0 GACTAACGGG 0.75126 -164 GGGGCTGCGGGACGGGCTGGGGCTATGGTG 6 144 1 GACGGGCTGG 0.674501 -42 CAACCAACAGGTTGGCCGGGGGCCCTGTTA 9 87 0 GTTGGCCGGG 0.714914 -70 ATTTGCGATGCCTGGGCGGGGATGCTGGCA 12 62 1 CCTGGGCGGG 0.65399 -23 ACGTTACCACGAAGAACCGGCCTCGCGATG 14 21 0 GAAGAACCGG 0.764027 -280 CTACGCCCTGGCTGAACGGGATCCTCCAGC 14 129 0 GCTGAACGGG 0.922162 -172 CATTCTCGACGAATGCCGGGTTCTTCTTGT 14 210 0 GAATGCCGGG 0.847132 -91 AACCGCGCCAGGTGGGCAGGGCTGGAGCGC 15 247 0 GGTGGGCAGG 0.809806 -54 CTCGAACAGCGATGGGAGGGCGGAT 16 70 1 GATGGGAGGG 0.574486 -15 GTCTTGCCGGGATAGTCGGGCGGCGATTTC 18 75 1 GATAGTCGGG 0.296566 -226 GGGCAGACCCGATAACCAGGTTCCCGTTCG 18 114 1 GATAACCAGG 0.421618 -187 CCGGTGGCATGCCGAACGGGAACCTGGTTA 18 126 0 GCCGAACGGG 0.901431 -175 ATAGGGCCGGGGAGACCCGGCGTCAGTGGT 18 184 1 GGAGACCCGG 0.597145 -117 ACACGGGGTTGACTGACGGGCAATATCGGC 18 242 1 GACTGACGGG 0.846929 -59 ACCGTCGGCCGACTAACCGGCCGCTGCCAG 21 242 0 GACTAACCGG 0.631595 -59 GACGGTGGCCGCTGGCCAGGATCTCGGGTC 21 266 1 GCTGGCCAGG 0.90446 -35 ATACCAATACGAAAGACGGGTTG 22 4 0 GAAAGACGGG 0.589896 -163 GATGTGAACCGGCGAGCCGGGTGAGGAGGA 22 144 1 GGCGAGCCGG 0.786341 -23 GTAACCCTGTGCAGCGCGGGGCAGCCAACC 23 95 1 GCAGCGCGGG 0.642032 -112 TACCTCCCAAGAAGAACCGGACTGGGCGGA 23 184 0 GAAGAACCGG 0.764027 -23 CCCGCTAGCTTAGCCGGGCAAATTTTG 26 25 0 GCTTAGCCGG 0.846317 -17 GGCAGAACCTGATTGGCAGGC 27 2 0 GATTGGCAGG 0.831435 -299 CCTTTCCGACGAAGAGCGGGAGGCGTTCCG 27 176 0 GAAGAGCGGG 0.934144 -125 GGCAGGGTCTGATTGCCGGGCTCCTCATCG 28 70 1 GATTGCCGGG 0.920276 -206 GGCAGGGTCTGATTGCCGGGCTCCTCATCG 28 126 1 GATTGCCGGG 0.920276 -150 ATTTGGATGAGCTTAGCCGGGCCCTGCCGG 28 180 0 GCTTAGCCGG 0.846317 -96 CGGTCGAATCGCCAGCCCGGACGGTGTCGC 28 216 1 GCCAGCCCGG 0.678296 -60 TCGACGGCGAGCTGGGCGAGCCGAGTGAG 28 257 1 GCTGGGCGAG 0.581477 -19 GCTTGTTGCGGACTGGCAGGA 33 2 0 GACTGGCAGG 0.791998 -36 AGCAGACCAGGGTAGTGCAGC 35 11 0 GCAGACCAGG 0.717085 -11 ********** Masking position 10 Map Score: 29.8842 Number of sites scoring better than the average of aligned sites = 14037 Number in coding regions = 13056 Number in noncoding regions = 981 Number of orfs with sites within 600 bp upstream = 674 Fraction of orfs with sites within 600 bp upstream = 0.108256 Motif number 8 CCTCGACGGCTGTGGGTGCGGCTTGAGAGGC 3 52 0 TGTGGTGCGG 0.774699 -249 TTGGTCTGTTGCTGGGCGCGGCCGCGATCTT 3 131 1 GCTGGCGCGG 0.94903 -170 CCGCGTCCGTGTTCGGTGCGGAACCCGCCGG 6 71 1 GTTGGTGCGG 0.989799 -115 CCGGAAACCTGGTTGTTGCGGCCGCGCCATG 7 175 1 GGTGTTGCGG 0.970798 -126 CGGCCAACCTGTTGGTTGGGCAAGGTATCGC 9 99 1 GTTGTTGGGC 0.465571 -58 TGGTTGCGCCGCTTGGGGCGTCGCGAGAGAT 14 84 1 GCTGGGGCGT 0.814658 -217 TCGGCGCAGGGTTTGTTGCGGCGTCGGCGCG 15 140 0 GTTGTTGCGG 0.981508 -161 TGGCAGGACTGCTGGCAGCGGCCGGTTAGTC 21 231 1 GCTGCAGCGG 0.857255 -70 GTCGGGATAACCTGGGAGCGGCGCAGCCAAG 23 29 0 CCTGGAGCGG 0.776094 -178 AATTGCGCGAGTTCTTTGCGTCACGGCCCGA 27 41 0 GTTTTTGCGT 0.398428 -260 TTCAACAGCGGTAAGTTGCGGGGGGTAGGCG 27 237 1 GTAGTTGCGG 0.895487 -64 TCCTTTCCGGGCTTGTTGCGGACTGGCAGGA 33 11 0 GCTGTTGCGG 0.981847 -27 CCGCGGAGACGTTGGGTGCGGAGTTGACGGC 34 73 1 GTTGGTGCGG 0.989799 -149 CACTTGCTTTGTTAGGAGCGTCCG 36 34 1 GTTGGAGCGT 0.90544 -14 GGCCGCACCCGGAGGTAGCGGGCAAGACCCC 37 225 0 GGAGTAGCGG 0.691681 -76 CTGCTGAAGGGTTAGGTGGGT 37 290 1 GTTGGTGGGT 0.779494 -11 *** ******* Masking position 8 Map Score: 14.169 Number of sites scoring better than the average of aligned sites = 2715 Number in coding regions = 2520 Number in noncoding regions = 195 Number of orfs with sites within 600 bp upstream = 170 Fraction of orfs with sites within 600 bp upstream = 0.0273049 Motif number 9 CCGCATTAGGGGAAATGCGGGGCTGCGGGACGG 6 126 1 GAATGGGGGC 0.928311 -60 CCCAGGCATCGCAAATGTTTGGCCGATCAGACA 12 45 0 GAATGTTGGC 0.897417 -40 CGCCGACGCAGCATCTGCTGGGGGTTTGCTGAT 15 12 0 GACTGTGGGG 0.897353 -289 CCTATTGTGGGGCCATGGTCGGCAAGATCGTAA 18 156 0 GCATGTCGGC 0.849526 -145 GAGACCCGGCGTCAGTGGTGGGCGGCACGGTCA 18 195 1 GCGTGTGGGC 0.942643 -106 GGCCAGGGACGCACATTGTGGGCTTCGGGGTAA 23 133 0 GAATTTGGGC 0.897357 -74 AGGCGCAAAAGAACATGATGGGCACCAGCGCCC 25 18 1 GAATGTGGGC 0.985922 -142 AGACGCGAAAGAACATGATGGGCGCTGGTGCCC 25 37 0 GAATGTGGGC 0.985922 -123 GCTTAGCCGGGCAAATTTTGGCCGCGCCCGGCT 26 12 0 GAATTTGGCC 0.42359 -30 GACAGGGGCAGAACCTGATTGGCAGGC 27 5 0 GACTGTTGGC 0.923547 -296 AAGAACTCGCGCAATTCCTGGGCGGTGCGCAGG 27 56 1 GATTCTGGGC 0.568934 -245 TTACTGAGGGACATCTGCTGGGCTGCGGCTTGC 27 140 1 AACTGTGGGC 0.855039 -161 CCGGCAATCAGACCCTGCCGGGCGCTGCGGGCC 28 56 0 GCCTGCGGGC 0.975175 -220 CCGGCAATCAGACCCTGCCGGGCGACGATTCGG 28 112 0 GCCTGCGGGC 0.975175 -164 AGCTTAGCCGGGCCCTGCCGGGCGACGATTCGG 28 168 0 GCCTGCGGGC 0.974792 -108 * * *** ***** Masking position 6 Map Score: 18.4354 Number of sites scoring better than the average of aligned sites = 1153 Number in coding regions = 1056 Number in noncoding regions = 97 Number of orfs with sites within 600 bp upstream = 80 Fraction of orfs with sites within 600 bp upstream = 0.0128493 Motif number 10 GATCGTCGCGCCCGCCGCCGCAAGCGTGGTGG 3 99 1 CCGCGCCGCA 0.423953 -202 CGGATCGCCCCCGGGGAGTGGCGGTTTCTTGT 3 188 0 CCGGAGTGGC 0.777147 -113 CCTGCGCCGACCCGCGATCTGTGAGATTCTTT 7 52 0 CCGCATCTGT 0.700817 -249 TTCCGGCGTGCTGAGCTGCGGCTA 8 3 1 CCGCTGCTGA 0.639084 -84 CCGGGCAGCATAGACGGCAAGC 10 1 1 CCGGAGCATA 0.672055 -212 GCCGGCTGGGGGCAGCACCCGCT 11 2 1 CCGCGGGGGC 0.941575 -31 GGGGGCAGCACCCGCTCGCGGCGGA 11 18 1 CCGCCGCGGC 0.832576 -15 GCATCCCCGCCCAGGCATCGCAAATGTTTGGC 12 55 0 CCGGATCGCA 0.825655 -30 GCCTGCCAGCATCCCCGCCCAGG 12 72 0 CCGCAGCATC 0.807229 -13 ACGGGATCCTCCAGCCAGGGGATTGCCGAATC 14 112 0 CCGCAGGGGA 0.97488 -189 CAAGAAGAACCCGGCATTCGTCGAGAATGCCT 14 211 1 CCGCTTCGTC 0.406662 -90 AGAGTATCGGCCTGCGATTGGTGACCAAAGGC 14 239 0 CCGCATTGGT 0.547186 -62 GTCAGCGGCGCCCGGAGTGGTATCGGAGAATC 16 23 0 CCGGGTGGTA 0.375554 -62 ATCGACTCGAACAGCGATGGGAGGGCGGAT 16 65 1 ACGCATGGGA 0.306757 -20 CGCGCGTAGCCGCGCGAGCTGATCCGCGCTGC 17 21 1 CGGCAGCTGA 0.407883 -34 CGATGGGGCGCCGGCTGGCGGCTCTG 18 5 0 CCGCGGCGGC 0.971394 -296 GGTCCGGTGTCCGGCAAGCCCAGCGTCTTGCC 18 51 1 CCGCAGCCCA 0.737332 -250 GCCGGGGAGACCCGGCGTCAGTGGTGGGCGGC 18 189 1 CCGGGTCAGT 0.427013 -112 TGCGGGGCGGCCCGCAAGGGGAGTGCGCGGTG 19 14 0 CCGCAGGGGA 0.974879 -81 ACGCTTCTGGCCGGGCATCGGTAACACGGTTT 19 46 1 CCGGATCGGT 0.853346 -49 TGCCAGCAGTCCTGCCATCGCCGATGGCGAAC 21 216 0 CCGCATCGCC 0.90636 -85 CTAACCGGCCGCTGCCAGCAGTCCTGCCATCG 21 228 0 GCGCAGCAGT 0.202367 -73 ACCCGAGATCCTGGCCAGCGGCCACCGTCGGC 21 263 0 CTGCAGCGGC 0.702388 -38 ATAGGCTTTACCAGCGATGTGAACCGGCGAGC 22 129 1 CCGCATGTGA 0.750543 -38 GTCGGGATAACCTGGGAGCGGCGCAGCCAAGG 23 28 0 CCGGAGCGGC 0.975444 -179 GGTTACTGGCCCAGGAGGCGGACGTCATCGTG 23 69 0 CCGGGGCGGA 0.957148 -138 ACCGCCGGAGCCGGCGAGTAGACGCGAAAGAA 25 57 0 CCGCAGTAGA 0.718461 -103 CCCGCTAGCTTAGCCGGGCAAA 26 30 0 CCGCAGCTTA 0.756559 -12 GATGAGGAGCCCGGCAATCAGACCCTGCCGGG 28 67 0 CCGCATCAGA 0.930226 -209 GCAATCAGACCCTGCCGGGCGACGATTCGGGC 28 110 0 CCGCGGGCGA 0.681283 -166 GATGAGGAGCCCGGCAATCAGACCCTGCCGGG 28 123 0 CCGCATCAGA 0.930226 -153 CGAATCGTCGCCCGGCAGGGCCCGGCTAAGCT 28 169 1 CCGGAGGGCC 0.75908 -107 TTCCGTAAATCCTGCTATCATAGCGTC 29 34 1 CCGCATCATA 0.689771 -17 AACGCTTGGCCCTGGAATCGGACTCGACAAGT 37 124 0 CCGGATCGGA 0.954874 -177 ** ** ****** Masking position 4 Map Score: 36.1142 Number of sites scoring better than the average of aligned sites = 12373 Number in coding regions = 11402 Number in noncoding regions = 971 Number of orfs with sites within 600 bp upstream = 649 Fraction of orfs with sites within 600 bp upstream = 0.10424 Motif number 11 CGCCCGGGTCGCGGGGCTAGCTACGGTTAC 3 251 0 GCGGGGCTAG 0.658381 -50 TAACGGCGCCCCGGGGCCGGCGGGTTCCGC 6 88 0 CCGGGGCCGG 0.767278 -98 TAGGGGAAATGCGGGGCTGCGGGACGGGCT 6 132 1 GCGGGGCTGC 0.993545 -54 GGCTGGTCGGCGGCGGCTCCC 6 175 0 GCTGGTCGGC 0.868001 -11 CTCACAGATCGCGGGTCGGCGCAGGTTGAC 7 59 1 GCGGGTCGGC 0.916339 -242 CAGCAGCGGCGCTTGGCCGCCATCTGGATG 7 253 1 GCTTGGCCGC 0.736111 -48 TTCCGGCGTGCTGAGCTGCGGCTATGGTG 8 10 1 GCTGAGCTGC 0.804291 -77 TGAGGGTGGCGCCGGGGTGCCCGACACGTA 8 42 1 GCCGGGGTGC 0.796022 -45 TACCGCTATGTGTGGGCTGCTGTCCACCTC 10 166 0 TGTGGGCTGC 0.911222 -47 GCCGGCTGGGGGCAGCACCCGCTCGC 11 7 1 TGGGGGCAGC 0.525967 -26 CGATGCCTGGGCGGGGATGCTGGCAGGC 12 67 1 GCGGGGATGC 0.884363 -18 CGCCAGGTGGGCAGGGCTGGAGCGCACCGG 15 242 0 GCAGGGCTGG 0.863776 -59 CCGGCAAGACGCTGGGCTTGCCGGACACCG 18 55 0 GCTGGGCTTG 0.734689 -246 AACCTGGTTATCGGGTCTGCCCGATGACGG 18 106 0 TCGGGTCTGC 0.904659 -195 CGGCGTCAGTGGTGGGCGGCACGGTCAGTA 18 201 1 GGTGGGCGGC 0.92648 -100 CAGAAGCGTTGCGGGGCGGCCCGCAAGGGG 19 25 0 GCGGGGCGGC 0.98053 -70 ATCGGCGATGGCAGGACTGCTGGCAGCGGC 21 223 1 GCAGGACTGC 0.50972 -78 GGCCAGGATCTCGGGTCTGCTCTGGCAGCA 21 279 1 TCGGGTCTGC 0.904659 -22 TTGGTTCCTTCCTTGGCTGCGCCGCTCCCA 23 18 1 CCTTGGCTGC 0.735839 -189 AATTGTCTTGGGTTGGCTGCCCCGCGCTGC 23 105 0 GGTTGGCTGC 0.753117 -102 GGACGCACATTGTGGGCTTCGGGGTAATTG 23 130 0 TGTGGGCTTC 0.47311 -77 AGGGACATCTGCTGGGCTGCGGCTTGCTGC 27 146 1 GCTGGGCTGC 0.992609 -155 CAGACCCTGCCGGGCGCTGCGGGCCCTCAC 28 51 0 CGGGCGCTGC 0.42217 -225 GGGTCTGATTGCCGGGCTCCTCATCGGGCC 28 74 1 GCCGGGCTCC 0.893037 -202 GGGTCTGATTGCCGGGCTCCTCATCGGGCC 28 130 1 GCCGGGCTCC 0.893037 -146 AGCGACACCGTCCGGGCTGGCGATTCGACC 28 217 0 TCCGGGCTGG 0.832961 -59 GCTGCACTACCCTGGTCTGCT 35 11 1 CCTGGTCTGC 0.834545 -11 CGTGATCCGGTCGGGGCTTCGTCCGTGCAG 37 161 0 TCGGGGCTTC 0.8554 -140 TGCGGATTCGACGGGGCCGCACCCGGAGGT 37 240 0 ACGGGGCCGC 0.747324 -61 ********** Masking position 7 Map Score: 40.0127 Number of sites scoring better than the average of aligned sites = 8255 Number in coding regions = 7692 Number in noncoding regions = 563 Number of orfs with sites within 600 bp upstream = 443 Fraction of orfs with sites within 600 bp upstream = 0.0711532 Motif number 12 AAAGGCTGTCCTAACCTACCGGTCG 5 5 0 CTAACTACCG 0.718072 -104 GGGCCGGCGGGTTCCGCACCGAACACGGACG 6 74 0 GTTCCCACCG 0.781241 -112 TCGGCGGCGGCTCCCTCACCATAGCCCCAGC 6 159 0 CTCCCCACCA 0.982919 -27 CGGCGCCACCCTCACACACCATAGCCGCAGC 8 25 0 CTCACCACCA 0.954838 -62 TCAAGACTAGGTCCCGTACCGGCACCCTAAC 9 60 1 GTCCCTACCG 0.96447 -97 CTTGAGGATTCTCCGATACCACTCCGGGCGC 16 17 1 CTCCGTACCA 0.833547 -68 CGCACTTCCTCCCACACCATGGCCGCTAG 25 141 0 CTCCCCACCA 0.982919 -19 GGGCGCTGCGGGCCCTCACCATCGGGCCCCG 28 39 0 GGCCCCACCA 0.880032 -237 GGGCCGCCAGGTCCCGTACCGTGAGCCACCT 34 14 0 GTCCCTACCG 0.96447 -208 GACGGCGATGATCACCTACCACAGGAAGATG 34 98 1 ATCACTACCA 0.671433 -124 GCCCTGTAGGCTAACCTACCAAGCACTTGCT 36 11 1 CTAACTACCA 0.731435 -37 ***** ***** Masking position 8 Map Score: 7.00023 Number of sites scoring better than the average of aligned sites = 898 Number in coding regions = 833 Number in noncoding regions = 65 Number of orfs with sites within 600 bp upstream = 62 Fraction of orfs with sites within 600 bp upstream = 0.00995824 Motif number 13 GTGCGGAACCCGCCGGCCCCGGGGCGCCGTTA 6 86 1 CCCGGCCCGG 0.953388 -100 GGCCCCGGGGCGCCGTTAGGGGATGGCCGCAT 6 100 1 CCCGTTAGGG 0.909879 -86 TCACCGCCTTGGGAACTCAGGGA 7 2 1 CCCGCCTTGG 0.502311 -299 CCCGTACCGGCACCCTAACAGGGCCCCCGGCC 9 72 1 CCCCTAACGG 0.872307 -85 TCCGCCGCGAGCGGGTGCTGCCCC 11 19 0 CCCGCGAGGG 0.841889 -14 TCTCTCGCGACGCCCCAAGCGGCGCAACCAAA 14 82 0 CCCCCAAGGG 0.718578 -219 GGCTGGAGCGCACCGGTGTCGGGCTCGTCTTG 15 226 0 CCCGGTGTGG 0.698824 -75 GCTTGCCGGACACCGGACCGGGTTCGCTGGCT 18 38 0 CCCGGACCGG 0.899117 -263 GCGGCGATTTCGCCGTCATCGGGCAGACCCGA 18 94 1 CCCGTCATGG 0.965267 -207 CGGGGAGACCCGGCGTCAGTGGTGGGCGGCAC 18 191 1 CGCGTCAGGG 0.895955 -110 GATCATTTCGCGCCGTCACAGGTATTCGCCGG 20 33 1 CCCGTCACGG 0.987465 -29 CATCGGGGATCGCCCTCGGGCGATGGCCAAGG 21 37 1 CCCCTCGGCG 0.537758 -264 ACGGGCGCGTCGGCCTCGGCGGTGCACAACTG 21 115 0 CGCCTCGGGG 0.615886 -186 CGTCGACCGGATCCGGCACGGGCGCGTCGGCC 21 132 0 ACCGGCACGG 0.642778 -169 GGCCAGCGGCCACCGTCGGCCGACTAACCGGC 21 251 0 CCCGTCGGCG 0.932795 -50 GTAGGCCTGGCACCGTGATCGCAATACCAATA 22 25 0 CCCGTGATGC 0.430065 -142 GGGTTACTGGCCCAGGAGGCGGACGTCATCGT 23 70 0 CCAGGAGGGG 0.605199 -137 CACCGCGAACCGCCGGAGCCGGCGAGTAGACG 25 65 0 CCCGGAGCGG 0.958325 -95 GCAGATGTCCCTCAGTAACTGGCTGCGTCAAG 27 126 0 CCAGTAACGG 0.759122 -175 CCCATGCTGGCACAGTCACCCGGCACGGGGCC 28 14 1 CCAGTCACCG 0.531725 -262 GCAAAAGCGACACCGTCCGGGCTGGCGATTCG 28 220 0 CCCGTCCGGC 0.846935 -56 CTGACCAACACCGTAGTTGGAGGACGGC 31 9 1 CCCGTAGTGG 0.92674 -20 CGCGGGACCCCTCCGTCAGCGGATGCCACCGC 34 156 0 CCCGTCAGGG 0.988598 -66 CAGCCGGCGGCACCGTAGCTGCCGCGTGGCCA 37 35 0 CCCGTAGCGC 0.843241 -266 * ******* ** Masking position 1 Map Score: 24.0765 Number of sites scoring better than the average of aligned sites = 10558 Number in coding regions = 9867 Number in noncoding regions = 691 Number of orfs with sites within 600 bp upstream = 469 Fraction of orfs with sites within 600 bp upstream = 0.0753293 Motif number 14 CCCGTTAGTCCCGTGTTAGCACGATGCTAT 6 32 1 CCGTGTTAGC 0.962205 -154 GAGGCCGCGTCCGTGTTCGGTGCGGAACCC 6 67 1 CCGTGTTCGG 0.960077 -119 TGTATGCGAGCCCAGTTCCGAACTGAACTT 7 208 0 CCCAGTTCCG 0.28667 -93 TGGCCGGGGGCCCTGTTAGGGTGCCGGTAC 9 75 0 CCCTGTTAGG 0.784077 -82 TGCATATTGACCGTGTACGCCGACGCATGT 10 53 1 CCGTGTACGC 0.967115 -160 TGGGGCCAAGCCGTGCACGCCGCAGCGCCT 14 157 0 CCGTGCACGC 0.8583 -144 GGACACCGGACCGGGTTCGCTGGCTCCGAT 18 33 0 CCGGGTTCGC 0.930058 -268 TCAGTCAACCCCGTGTTGCGCAGACGTTAC 18 228 0 CCGTGTTGCG 0.882378 -73 TCTGTTAAAACCGTGTTACCGATGCCCGGC 19 55 0 CCGTGTTACC 0.888525 -40 AGGCCTGGCACCGTGATCGCAATACCAATA 22 25 0 CCGTGATCGC 0.916013 -142 CCTCATCGGGCCGTGCCGGCCCGAATCGTC 28 92 1 CCGTGCCGGC 0.921103 -184 CCTCATCGGGCCGTGCCGGCCCGAATCGTC 28 148 1 CCGTGCCGGC 0.921103 -128 GCCCTGTAGGCTAACCTACCA 36 2 1 CCCTGTAGGC 0.867374 -46 ********** Masking position 2 Map Score: 10.9617 Number of sites scoring better than the average of aligned sites = 2266 Number in coding regions = 2113 Number in noncoding regions = 153 Number of orfs with sites within 600 bp upstream = 157 Fraction of orfs with sites within 600 bp upstream = 0.0252168 Motif number 15 GTAACCGTAGCTAGCCCCGCGACCCGGGCG 3 251 1 CTAGCCCCGC 0.838645 -50 GCCGCCTCAGCCTGCGGCGCCCGGGTCGCG 3 268 0 CCTGCGGCGC 0.909893 -33 ATCTGTGCGACTTTCGCCGCGAGAAAGGCT 5 29 0 CTTTCGCCGC 0.731492 -80 AGCCCGTCCCGCAGCCCCGCATTTCCCCTA 6 132 0 GCAGCCCCGC 0.917362 -54 GCGCGGTCAACCTGCGCCGACCCGCGATCT 7 64 0 CCTGCGCCGA 0.943953 -237 AGATGGCGGCCAAGCGCCGCTGCTGAGACT 7 248 0 CAAGCGCCGC 0.785148 -53 CACCATAGCCGCAGCTCAGCACGCCGGAA 8 10 0 GCAGCTCAGC 0.437453 -77 GCAAGGTATCGCTGCGGCGCGCATCGTCGC 9 118 1 GCTGCGGCGC 0.880691 -39 AGCGAATTTGGTTGCGCCGCTTGGGGCGTC 14 76 1 GTTGCGCCGC 0.947545 -225 CGCAACAAACCCTGCGCCGACCCGTACTCG 15 151 1 CCTGCGCCGA 0.943953 -150 GCGTCTCAATCTAGTGCAGCGAGTACGGGT 15 170 0 CTAGTGCAGC 0.679379 -131 GATACCACTCCGGGCGCCGCTGACAAGCTC 16 31 1 CGGGCGCCGC 0.668469 -54 CGCGGATCAGCTCGCGCGGCTACGCGCGGC 17 19 0 CTCGCGCGGC 0.584345 -36 TCAACCCCGTGTTGCGCAGACGTTACTGAC 18 224 0 GTTGCGCAGA 0.698465 -77 TGATGTCGCAGTTGTGCACCGCCGAGGCCG 21 107 1 GTTGTGCACC 0.243902 -194 AGCAGTCCTGCCATCGCCGATGGCGAACTC 21 214 0 CCATCGCCGA 0.344099 -87 ACTGTTACCAGGTGCGCGGCCCGCGGGTAG 22 53 0 GGTGCGCGGC 0.506198 -114 TCCTTCCTTGGCTGCGCCGCTCCCAGGTTA 23 23 1 GCTGCGCCGC 0.544477 -184 GGCCAGTAACCCTGTGCAGCGCGGGGCAGC 23 90 1 CCTGTGCAGC 0.896815 -117 TCTTGGGTTGGCTGCCCCGCGCTGCACAGG 23 100 0 GCTGCCCCGC 0.785233 -107 GCGTTCAGATCTTGTGCCGC 24 1 0 CTTGTGCCGC 0.917917 -36 GACAACGTCCCCTGCGCACCGCCCAGGAAT 27 69 0 CCTGCGCACC 0.744264 -232 GGACGTTGTCGCTGTGCCTCGAGCTGCCTG 27 89 1 GCTGTGCCTC 0.460502 -212 GCAGCAAGCCGCAGCCCAGCAGATGTCCCT 27 146 0 GCAGCCCAGC 0.751694 -155 TATCGCAACGGCAGTGCCGC 30 1 0 GCAGTGCCGC 0.937596 -30 CGTCGAGTGTCTTGGGCCGCCAGGTCCCGT 34 28 0 CTTGGGCCGC 0.748089 -194 GCAGACCAGGGTAGTGCAGC 35 1 0 GTAGTGCAGC 0.679324 -21 CGCAAAGGCGGCCGCGCAGAAAGTCTGCTG 37 266 1 GCCGCGCAGA 0.480558 -35 ********** Masking position 4 Map Score: 38.1995 Number of sites scoring better than the average of aligned sites = 17292 Number in coding regions = 16203 Number in noncoding regions = 1089 Number of orfs with sites within 600 bp upstream = 656 Fraction of orfs with sites within 600 bp upstream = 0.105365