AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00271_mtub_reg_300.orf -o00271_mtub_300.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 purT 300 purT #2 def 300 def #3 metS 85 metS #4 lipU 300 lipU #5 cysM2 56 cysM2 #6 pra 201 pra #7 metB 31 metB #8 metE 300 metE #9 mIHF 300 mIHF #10 gmk 134 gmk #11 Rv1390 65 hypothetical protein Rv1390 #12 metK 127 metK #13 fmt 196 fmt #14 metH 225 metH #15 sahH 104 sahH #16 Rv3252c 108 hypothetical protein Rv3252c #17 Rv3253c 90 hypothetical protein Rv3253c #18 metC 282 metC #19 Rv3404c 117 hypothetical protein Rv3404c #20 Rv3405c 61 hypothetical protein Rv3405c Motif number 1 TTCGTGACGACCCAGCCACGCAGCGC 1 7 0 CCCAGCCACG 0.846955 -294 CAGGGTTCGTCGCTGCCGCGAGCCAGGCGA 1 76 1 CGCTGCCGCG 0.855023 -225 TAGGTATGCGCCCAGTCGCCTGGCTCGCGG 1 91 0 CCCAGTCGCC 0.908154 -210 ATACCTATTCGGGTGGCGGCAACCATGTCG 1 114 1 GGGTGGCGGC 0.880248 -187 ACTTGGCCTACGTAGGCGCTTCTTCGGCGA 2 23 1 CGTAGGCGCT 0.813946 -278 GAATATTGAACCACGCCAGGAACCGTCGGG 2 51 1 CCACGCCAGG 0.908629 -250 CAGGATTACCGCCCGACGGTTCCTGGCGTG 2 62 0 GCCCGACGGT 0.854863 -239 TCGGCCGACTCGCGGGCAGGATTACCGCCC 2 78 0 CGCGGGCAGG 0.900139 -223 TCGGGTGCAAGCAAGTCGGCCGACTCGCGG 2 93 0 GCAAGTCGGC 0.720774 -208 CGCCGCGATCGGCAGTCGGGTGCAAGCAAG 2 108 0 GGCAGTCGGG 0.790012 -193 GCCGATCGCGGCGCGCCGGCTCATGCTCCG 2 125 1 GCGCGCCGGC 0.932644 -176 CCACACGACGGCTGGCCGGCATGTCGCGTC 2 169 0 GCTGGCCGGC 0.503765 -132 CGGCGATGATGCCCGCCGCCCCGCGGCGCG 2 207 1 GCCCGCCGCC 0.524092 -94 GCCCGCCGCCCCGCGGCGCGCCTAAGCCGA 2 217 1 CCGCGGCGCG 0.970686 -84 GGCGGGCTGAGGAGGCGGGCAATCGGCTTA 2 239 0 GGAGGCGGGC 0.64755 -62 CGCCTCCTCAGCCCGCCGCCTCGCGGCGCG 2 252 1 GCCCGCCGCC 0.524092 -49 CGGCGCGTATCGTCGGCGCGCTTAAGCTAG 2 275 1 CGTCGGCGCG 0.964787 -26 GCTCCGGAACCCCTGGCGCCG 3 2 0 CCCTGGCGCC 0.980546 -84 CCAGGGGTTCCGGAGCGGGCGGTGGATCTC 3 16 1 CGGAGCGGGC 0.708089 -70 ATCTCGTCTGGCTGGGCGGTCGGAGCTCAC 3 41 1 GCTGGGCGGT 0.869205 -45 GAGCCAGAGGCTCAGCCGCTTCGTCACATG 4 71 1 CTCAGCCGCT 0.570066 -230 TGTCATTTCGCCGCGCGACGTGTTGAAGGC 4 175 1 CCGCGCGACG 0.532946 -126 TTGCGATCAGCGACGGCGCCCCGGTGGAGG 4 228 1 CGACGGCGCC 0.980654 -73 GGCACACGCGCTCCGTCGGCATCCCG 5 7 0 CTCCGTCGGC 0.76345 -50 AGCGCGTGTGCCTGGCCGGCAGGCGCCTGA 5 25 1 CCTGGCCGGC 0.515732 -32 CGTTCATCGTCTCAGGCGCCTGCCGGCCAG 5 36 0 CTCAGGCGCC 0.840887 -21 TCGCGCAGGCAGGCGCGCCGCAATTTA 6 8 1 GGCAGGCGCG 0.945723 -194 AAACAATTACGGCAGGCGGCCAGTGCCGCA 6 48 1 GGCAGGCGGC 0.967456 -154 CCGCACAGGTCGTGGGCACTGACCCATTGG 6 73 1 CGTGGGCACT 0.646377 -129 GTGAGATGAGCCACGGGGCCCAATGGGTCA 6 92 0 CCACGGGGCC 0.919121 -110 TCACCGGAACGCCCGGCGGTGAGATGAGCC 6 110 0 GCCCGGCGGT 0.96856 -92 CGGACGGTCGGGTGGGCAGTGCAGTCCCGG 7 12 0 GGTGGGCAGT 0.547433 -20 TTGTCTACTTCCAAGACGGCGGTCGTTCCT 8 52 0 CCAAGACGGC 0.843596 -249 TGCTCCTACTGGCCGTCGCTTCCCAGTCGT 8 94 0 GGCCGTCGCT 0.770283 -207 CAGGCTCGCACCCGGTGGGTGCTCCTACTG 8 113 0 CCCGGTGGGT 0.52887 -188 CGTCCGGCACGGCTGGCAGGTCTTCGGACT 8 145 0 GGCTGGCAGG 0.817481 -156 TGCCAGCCGTGCCGGACGCGCCGCGCCCGG 8 157 1 GCCGGACGCG 0.756208 -144 GACGCGCCGCGCCCGGCGGCTCATCGCCTC 8 171 1 GCCCGGCGGC 0.967264 -130 AACGCCCATTCCACGAGGCGATGAGCCGCC 8 185 0 CCACGAGGCG 0.612809 -116 GCTGCGCGTCCGCGGGCGGTGAACCACCCG 8 263 1 CGCGGGCGGT 0.966371 -38 TCAGCTGTTTGCCAGCCACTGCCCAGTC 9 9 0 GCCAGCCACT 0.63893 -292 GTTGACGCAACCATGGCGCGACACGCGCGA 9 169 1 CCATGGCGCG 0.936186 -132 CGCGAGTGATCCCCGGCACTGCGAGTTGCG 9 212 1 CCCCGGCACT 0.91531 -89 CTGCGAGTTGCGACGCCACCTGCCGCCACC 9 230 1 CGACGCCACC 0.906833 -71 CTCAACCGGTCGACGACGGCCGACGACTGG 9 258 0 CGACGACGGC 0.923471 -43 CCCCGCCGGCCGACGATGCG 10 1 1 CCCCGCCGGC 0.528345 -134 CGCCGGCCGACGATGCGGGCCGGAAGGCCT 10 14 1 CGATGCGGGC 0.752976 -121 TGTGAGCTGGCCCTGTCAGGCCGCCTCTCC 10 70 0 CCCTGTCAGG 0.648871 -65 CGGGTTCCCCCCACGGGGCGTTCGGCCTGA 10 102 0 CCACGGGGCG 0.892534 -33 TGGCGCTCCTGGGCGGGTTCCCCCCAC 10 118 0 CCTGGGCGGG 0.929665 -17 ATTTAGCTTTCCAAGCCGCTCTACGCCGCC 11 32 1 CCAAGCCGCT 0.850571 -34 AGCCGCTCTACGCCGCCAGGAGAAATTTCA 11 45 1 CGCCGCCAGG 0.541119 -21 CGGGTCCGGCGGCCGGTTCTGTACGGG 12 8 1 GGCGGCCGGT 0.749858 -120 CTGTACGGGTCCTGGACAGGTGCTGGACGA 12 29 1 CCTGGACAGG 0.577448 -99 ACTTCGACATCGTTGTCGCGGGCACGGCGG 13 45 1 CGTTGTCGCG 0.630247 -152 GTTGTCGCGGGCACGGCGGGAGCCTGGGCA 13 56 1 GCACGGCGGG 0.968833 -141 ACGGCGGGAGCCTGGGCAGTAGCGTGCCTT 13 68 1 CCTGGGCAGT 0.743657 -129 CGGTGGGTACGCAAGGCACGCTACTGCCCA 13 80 0 GCAAGGCACG 0.670062 -117 GCCCACGCCACGTCGGCGGCGCTTCTTAGA 13 169 1 CGTCGGCGGC 0.978678 -28 TCGTCGCCCGGGTGGACGCCGTAGGCTGAC 14 14 0 GGTGGACGCC 0.722244 -212 TCGCTACTAGCCGGGCCGCCTCAGACGACG 14 57 0 CCGGGCCGCC 0.874357 -169 GTCGCGCTGAGGTGGGCACGTTGTGTGCCT 14 99 1 GGTGGGCACG 0.703776 -127 GTGACCGATGCGACGTCGCGGTACCTGGCA 14 156 1 CGACGTCGCG 0.864509 -70 GTTGACAGCGCTCTGCCAGGTACCGCGACG 14 169 0 CTCTGCCAGG 0.464231 -57 TTTCCTCAGTCGTTGACAGCGCTCTGCCAG 14 180 0 CGTTGACAGC 0.426902 -46 CGGGGCTGACCGACGGCGGCTACAGTGACT 15 15 1 CGACGGCGGC 0.98443 -90 TCACAGGGATCCGAGCGGGCTACTTAGCCT 15 59 0 CCGAGCGGGC 0.754958 -46 ACTAGCTTCGCCGCGTATTTACAAA 16 6 1 CTTCGCCGCG 0.757372 -103 TACTCTGCGAGGATGACGGGTCGCGTAGGG 17 29 0 GGATGACGGG 0.592528 -62 CGCTAGGGGCCCGCGCGGGCTGCTAGTAAT 18 26 0 CCGCGCGGGC 0.865128 -257 CGCGCGGGCCCCTAGCGGCCGGTAAAGGGC 18 39 1 CCTAGCGGCC 0.727069 -244 CAAAGCACAACTCCGGCGGTCTCAACTGGC 18 67 0 CTCCGGCGGT 0.842694 -216 GAAGCCTAGCGCATGGCAGCTACTCAGTGC 18 102 0 GCATGGCAGC 0.754169 -181 CGGGGCTTGACGCTGGCGCTCATGACCGAC 18 134 0 CGCTGGCGCT 0.919636 -149 GCCCCGGCTTGCTGGCCGGCAACCCTCCAA 18 158 1 GCTGGCCGGC 0.503765 -125 TGGTCATCACCCGGGGCACCCCACCGCGGT 18 187 0 CCGGGGCACC 0.869554 -96 GCGCTTGCCGCGCAGCCGGCGATGGCTACT 18 222 0 CGCAGCCGGC 0.900405 -61 CGCGGGTCCGCCATGACGGGCCCCTGACCA 18 249 1 CCATGACGGG 0.777172 -34 CGGACGGCCACGCTGGGGCCAGCGCAGGGA 19 17 0 CGCTGGGGCC 0.875797 -101 GACTCGCCCCCGCCAGCCTGCCCAGCG 19 101 0 CCCCGCCAGC 0.57004 -17 CATTCATTGAGGACGCCAGCA 20 2 0 GGACGCCAGC 0.86432 -60 ********** Masking position 5 Map Score: 116.819 Number of sites scoring better than the average of aligned sites = 126457 Number in coding regions = 119158 Number in noncoding regions = 7299 Number of orfs with sites within 600 bp upstream = 1687 Fraction of orfs with sites within 600 bp upstream = 0.27096 Motif number 2 GACGAACCCTGCGCGGACCGGACAGCTTCGG 1 56 0 GCGCGACCGG 0.675824 -245 GGTCCGCGCAGGGTTCGTCGCTGCCGCGAGC 1 68 1 GGGTTGTCGC 0.548062 -233 GCGAGCCAGGCGACTGGGCGCATACCTATTC 1 93 1 CGACTGGCGC 0.850947 -208 CATACCTATTCGGGTGGCGGCAACCATGTCG 1 113 1 CGGGTGCGGC 0.886818 -188 TTTGCTATGAGGAGGTGGGGGCAACTGAGTG 1 199 0 GGAGGGGGGG 0.645647 -102 GGCAGGATTACCGCCCGACGGTTCCTGGCGT 2 63 0 CCGCCGACGG 0.540186 -238 GTAATCCTGCCCGCGAGTCGGCCGACTTGCT 2 83 1 CCGCGGTCGG 0.97007 -218 GCGCCGCGATCGGCAGTCGGGTGCAAGCAAG 2 108 0 CGGCATCGGG 0.583269 -193 GAGCATGAGCCGGCGCGCCGCGATCGGCAGT 2 122 0 CGGCGGCCGC 0.991828 -179 AACCACACGACGGCTGGCCGGCATGTCGCGT 2 170 0 CGGCTGCCGG 0.976402 -131 CTTAGGCGCGCCGCGGGGCGGCGGGCATCAT 2 212 0 CCGCGGGCGG 0.876901 -89 CTGAGGAGGCGGGCAATCGGCTTAGGCGCGC 2 232 0 GGGCATCGGC 0.741493 -69 ACGATACGCGCCGCGAGGCGGCGGGCTGAGG 2 257 0 CCGCGGGCGG 0.876901 -44 TTAAGCGCGCCGACGATACGCGCCGCGAGGC 2 269 0 CGACGTACGC 0.737883 -32 GAGATCCACCGCCCGCTCCGGAACCCCTGGC 3 15 0 GCCCGTCCGG 0.590859 -71 GTCTGGCTGGGCGGTCGGAGCTCACCCGCAC 3 46 1 GCGGTGGAGC 0.451836 -40 AGCTAAGTTCGCGGGGTTGGCTGAGCCAGAG 4 49 1 GCGGGTTGGC 0.730736 -252 TGACAACTCTGGGTGAGCCGGATACCTTACT 4 149 0 GGGTGGCCGG 0.899832 -152 GCCTTCAACACGTCGCGCGGCGAAATGACAA 4 174 0 CGTCGGCGGC 0.667759 -127 CGATCAGCGACGGCGCCCCGGTGGAGGTCGT 4 231 1 CGGCGCCCGG 0.808463 -70 AAGTCTTGTTGCGCGATTAGCTGCGCTGGCG 4 274 1 GCGCGTTAGC 0.752064 -27 TGCCGACGGAGCGCGTGTGCCTGGCCGGCAG 5 16 1 GCGCGGTGCC 0.744146 -41 ATCGTCTCAGGCGCCTGCCGGCCAGGCACAC 5 30 0 GCGCCGCCGG 0.58844 -27 TCGCGCAGGCAGGCGCGCCGCAATTTAGTTC 6 11 1 AGGCGGCCGC 0.885073 -191 GACCTGTGCGGCACTGGCCGCCTGCCGTAAT 6 53 0 GCACTGCCGC 0.932966 -149 GTGAGATGAGCCACGGGGCCCAATGGGTCAG 6 91 0 CCACGGGCCC 0.578183 -111 TCTCACCGCCGGGCGTTCCGGTGAATCCGGT 6 116 1 GGGCGTCCGG 0.983573 -86 CGGACGGTCGGGTGGGCAGTGC 7 20 0 GGACGTCGGG 0.869962 -12 GCAGGTCTTCGGACTCGCAGGCTCGCACCCG 8 129 0 GGACTGCAGG 0.600617 -172 GCGTCCGGCACGGCTGGCAGGTCTTCGGACT 8 145 0 CGGCTGCAGG 0.848923 -156 ATGAGCCGCCGGGCGCGGCGCGTCCGGCACG 8 164 0 GGGCGGGCGC 0.967767 -137 TTCCACGAGGCGATGAGCCGCCGGGCGCGGC 8 176 0 CGATGGCCGC 0.687816 -125 CTCGTGGAATGGGCGTTTGGCCGTGCCTGTT 8 198 1 GGGCGTTGGC 0.937018 -103 CACCGCCCGCGGACGCGCAGCCGATCCGATT 8 253 0 GGACGGCAGC 0.888958 -48 TGCTGAGCACCCGCGTTTGGGGCACTAGCAG 9 79 1 CCGCGTTGGG 0.842039 -222 CGCGTTTGGGGCACTAGCAGCCACGATGATC 9 90 1 GCACTGCAGC 0.633579 -211 GCGACCTATCGCGCGTGTCGCGCCATGGTTG 9 176 0 GCGCGGTCGC 0.984369 -125 CGACGGCCGACGACTGGTGGCGGCAGGTGGC 9 244 0 CGACTGTGGC 0.650672 -57 TGGATTTCGGCTTTCCGGACCTGCTCAA 9 283 0 CGGCTTCCGG 0.941224 -18 CCCCGCCGGCCGACGATGCGGGCCGGAAGGC 10 11 1 CGACGTGCGG 0.818325 -124 CCCCCGTATGCGGGGGTACGCCCACCACAGG 10 41 0 CGGGGTACGC 0.773484 -94 CCCCGCATACGGGGGAGAGGCGGCCTGACAG 10 57 1 GGGGGGAGGC 0.848564 -78 TCCCCCCACGGGGCGTTCGGCCTGAATTGTG 10 96 0 GGGCGTCGGC 0.980811 -39 GCGCTCCTGGGCGGGTTCCCCCCACGGGGCG 10 112 0 GCGGGTCCCC 0.596378 -23 GCTTTCCAAGCCGCTCTACGCCGCCAGGAGA 11 37 1 CCGCTTACGC 0.747157 -29 CGGGTCCGGCGGCCGGTTCTGTACGG 12 6 1 CCGGCGCCGG 0.45896 -122 TCGTTGTCGCGGGCACGGCGGGAGCCTGGGC 13 54 1 GGGCAGGCGG 0.700115 -143 TCTAACTATCGCGCGTGTCGGAATTGTGGCC 13 141 1 GCGCGGTCGG 0.97669 -56 CATCGTCGCCCGGGTGGACGCCGTAGGCTGA 14 15 0 CGGGTGACGC 0.735106 -211 CAGACGACGTGCACGGTTCGCATCGTCGCCC 14 35 0 GCACGTTCGC 0.832656 -191 TGAGGCGGCCCGGCTAGTAGCGATGGCCACG 14 64 1 CGGCTGTAGC 0.717378 -162 TGGCTCATGAGGAGGTTTGGCAT 16 96 1 GGAGGTTGGC 0.427963 -13 CTAGCAGCCCGCGCGGGCCCCTAGCGGCCGG 18 30 1 GCGCGGCCCC 0.884126 -253 CAGCAAGCCGGGGCTTGACGCTGGCGCTCAT 18 141 0 GGGCTGACGC 0.936124 -142 AACCCTCCAACCGCGGTGGGGTGCCCCGGGT 18 178 1 CCGCGTGGGG 0.877686 -105 TGGCGGACCCGCGCTTGCCGCGCAGCCGGCG 18 231 0 GCGCTGCCGC 0.94492 -52 TGATGTCCCTGCGCTGGCCCCAGCGTGGCCG 19 12 1 GCGCTGCCCC 0.821242 -106 AGCTGGTGTTGGGGGCTCCGCTGATGGGCGC 19 73 1 GGGGGTCCGC 0.956348 -45 CTCCGCTGATGGGCGCTGGGCAGGCTGGCGG 19 88 1 GGGCGTGGGC 0.952858 -30 ***** ***** Masking position 10 Map Score: 91.8456 Number of sites scoring better than the average of aligned sites = 55399 Number in coding regions = 51323 Number in noncoding regions = 4076 Number of orfs with sites within 600 bp upstream = 1408 Fraction of orfs with sites within 600 bp upstream = 0.226148 Motif number 3 ATTCTCCTTTGCCGAAGCTGTCCGGTCCGC 1 45 1 GCCGAAGCTG 0.25838 -256 ACGAACCCTGCGCGGACCGGACAGCTTCGG 1 56 0 CGCGGACCGG 0.918768 -245 CAGGGTTCGTCGCTGCCGCGAGCCAGGCGA 1 76 1 CGCTGCCGCG 0.635048 -225 CGGCAACCATGTCGGAGCCGGATGGATGGC 1 130 1 GTCGGAGCCG 0.896396 -171 CCGAGCGAGAGGGTGAGCTG 1 291 1 GGGTGAGCTG 0.67451 -10 CTGCCGATCGCGGCGCGCCGGCTCATGCTC 2 123 1 CGGCGCGCCG 0.417743 -178 CGCGACATGCCGGCCAGCCGTCGTGTGGTT 2 171 1 CGGCCAGCCG 0.33547 -130 GTGGTTCACACCCGGCGATGATGCCCGCCG 2 195 1 CCCGGCGATG 0.911334 -106 TCGGCTTAGGCGCGCCGCGGGGCGGCGGGC 2 217 0 CGCGCCGCGG 0.950551 -84 GCCTCCTCAGCCCGCCGCCTCGCGGCGCGT 2 253 1 CCCGCCGCCT 0.535819 -48 CCCGCCGCCTCGCGGCGCGTATCGTCGGCG 2 263 1 CGCGGCGCGT 0.454781 -38 CTAGCTTAAGCGCGCCGACGATACGCGCCG 2 275 0 CGCGCCGACG 0.940595 -26 CTCCGGAACCCCTGGCGCCG 3 1 0 CCTGGCGCCG 0.523261 -85 GGGTTCCGGAGCGGGCGGTGGATCTCGTCT 3 20 1 GCGGGCGGTG 0.702219 -66 GATCTCGTCTGGCTGGGCGGTCGGAGCTCA 3 40 1 GGCTGGGCGG 0.49974 -46 CTGAGCCAGAGGCTCAGCCGCTTCGTCACA 4 69 1 GGCTCAGCCG 0.898228 -232 TGACAACTCTGGGTGAGCCGGATACCTTAC 4 150 0 GGGTGAGCCG 0.818975 -151 CGACCTCCACCGGGGCGCCGTCGCTGATCG 4 231 0 CGGGGCGCCG 0.651444 -70 TTGCGCGATTAGCTGCGCTGGCGTCACGA 4 282 1 AGCTGCGCTG 0.220977 -19 CAGGCACACGCGCTCCGTCGGCATCCCG 5 9 0 CGCTCCGTCG 0.472774 -48 TCAGGCGCCTGCCGGCCAGGCACACGCGCT 5 25 0 GCCGGCCAGG 0.862127 -32 GCCGGCAGGCGCCTGAGACGATGAACGC 5 39 1 GCCTGAGACG 0.766804 -18 ACTAAATTGCGGCGCGCCTGCCTGCGCGA 6 10 0 GGCGCGCCTG 0.592119 -192 GGCGGCCAGTGCCGCACAGGTCGTGGGCAC 6 62 1 GCCGCACAGG 0.683475 -140 CACCGGAACGCCCGGCGGTGAGATGAGCCA 6 109 0 CCCGGCGGTG 0.876832 -93 CCGGGACTGTCCCGCAGCGGTATGCAGGAA 8 27 1 CCCGCAGCGG 0.929784 -274 GACTCGCAGGCTCGCACCCGGTGGGTGCTC 8 119 0 CTCGCACCCG 0.808049 -182 TGCCAGCCGTGCCGGACGCGCCGCGCCCGG 8 157 1 GCCGGACGCG 0.838237 -144 CGATGAGCCGCCGGGCGCGGCGCGTCCGGC 8 167 0 CCGGGCGCGG 0.721677 -134 TTCCACGAGGCGATGAGCCGCCGGGCGCGG 8 177 0 CGATGAGCCG 0.367958 -124 CGCCCGCGGACGCGCAGCCGATCCGATTGA 8 251 0 CGCGCAGCCG 0.96879 -50 CTGCGCGTCCGCGGGCGGTGAACCACCCGT 8 264 1 GCGGGCGGTG 0.702219 -37 CTCGAGTGCTCTCTCAGCTGTTTGCCAGCC 9 22 0 CTCTCAGCTG 0.471762 -279 TGGGTTGCACCGCGGAGATGTCGGCGAAAA 9 126 1 CGCGGAGATG 0.850155 -175 GCGAGTGATCCCCGGCACTGCGAGTTGCGA 9 213 1 CCCGGCACTG 0.418166 -88 ACGACTGGTGGCGGCAGGTGGCGTCGCAAC 9 236 0 GCGGCAGGTG 0.448515 -65 ATTTCGGCTTTCCGGACCTGCTCAACCGGT 9 278 0 TCCGGACCTG 0.228344 -23 CCCCGCCGGCCGACGATGCGGGCCG 10 6 1 CCGGCCGACG 0.835674 -129 GTCAGGCCGCCTCTCCCCCGTATGCGGGGG 10 56 0 CTCTCCCCCG 0.715833 -79 GGGAGAGGCGGCCTGACAGGGCCAGCTCAC 10 69 1 GCCTGACAGG 0.499894 -66 GTGGGGGGAACCCGCCCAGGAGCGCCA 10 118 1 CCCGCCCAGG 0.814714 -17 AGAACCGGCCGCCGGACCCG 12 1 0 GCCGGACCCG 0.963884 -127 CAGCACCTGTCCAGGACCCGTACAGAACCG 12 24 0 CCAGGACCCG 0.539558 -104 AAGGGATCGTCCAGCACCTGTCCAGGACCC 12 35 0 CCAGCACCTG 0.264829 -93 ACATCGTTGTCGCGGGCACGGCGGGAGCCT 13 51 1 CGCGGGCACG 0.525059 -146 TGTCGGAATTGTGGCCCACGCCACGTCGGC 13 156 1 GTGGCCCACG 0.405458 -41 TCTAAGAAGCGCCGCCGACGTGGCGTGGGC 13 169 0 GCCGCCGACG 0.932277 -28 GGACGCCGTAGGCTGACCAG 14 1 0 GGCTGACCAG 0.364703 -225 CGGCGTCCACCCGGGCGACGATGCGAACCG 14 23 1 CCGGGCGACG 0.867349 -203 CGTCGTCTGAGGCGGCCCGGCTAGTAGCGA 14 57 1 GGCGGCCCGG 0.952067 -169 CGCTTTGTCGCGCTGAGGTGGGCACGTTGT 14 93 1 CGCTGAGGTG 0.561537 -133 TTGTGTGCCTGCCTCAGCTGAGACTCTTGT 14 119 1 GCCTCAGCTG 0.790949 -107 TGAGACTCTTGTGGCAGCTGTGACCGATGC 14 137 1 GTGGCAGCTG 0.475604 -89 GTTGACAGCGCTCTGCCAGGTACCGCGACG 14 169 0 CTCTGCCAGG 0.313679 -57 AGTCACTGTAGCCGCCGTCGGTCAGCCCCG 15 15 0 GCCGCCGTCG 0.713349 -90 CTTCTTTGGGGGCTCACAGGGATCCGAGCG 15 72 0 GGCTCACAGG 0.416449 -33 TTTGTAAATACGCGGCGAAGCTAGT 16 6 0 CGCGGCGAAG 0.608487 -103 GTACTGGGTACTCTGCGAGGATGACGGGTC 17 37 0 CTCTGCGAGG 0.406293 -54 CCGGCCGCTAGGGGCCCGCGCGGGCTGCTA 18 31 0 GGGGCCCGCG 0.700942 -252 AGTTGAGACCGCCGGAGTTGTGCTTTGAGT 18 70 1 GCCGGAGTTG 0.468172 -213 AACCGCGGTGGGGTGCCCCGGGTGATGACC 18 186 1 GGGTGCCCCG 0.852816 -97 CCGCGCTTGCCGCGCAGCCGGCGATGGCTA 18 224 0 CGCGCAGCCG 0.96879 -59 GGCCCGTCATGGCGGACCCGCGCTTGCCGC 18 241 0 GGCGGACCCG 0.966094 -42 TCCGCCATGACGGGCCCCTGACCAGACGGG 18 255 1 CGGGCCCCTG 0.827557 -28 CTGATGTCCCTGCGCTGGCCCCAGCGT 19 8 1 CCCTGCGCTG 0.922816 -110 ACGCATACCGGACGGCCACGCTGGGGCCAG 19 25 0 GACGGCCACG 0.27459 -93 TCCGGTATGCGTCGGCCCTGAAGTAGGGTG 19 43 1 GTCGGCCCTG 0.836903 -75 CCCTGAAGTAGGGTGAGCTGGTGTTGGGGG 19 58 1 GGGTGAGCTG 0.67451 -60 TGGTGTTGGGGGCTCCGCTGATGGGCGCTG 19 76 1 GGCTCCGCTG 0.886811 -42 GCCCCCGCCAGCCTGCCCAGCGCCCATCAG 19 93 0 GCCTGCCCAG 0.510077 -25 GACTCGCCCCCGCCAGCCTGCC 19 106 0 CTCGCCCCCG 0.871837 -12 ********** Masking position 10 Map Score: 95.3721 Number of sites scoring better than the average of aligned sites = 109655 Number in coding regions = 103251 Number in noncoding regions = 6404 Number of orfs with sites within 600 bp upstream = 1605 Fraction of orfs with sites within 600 bp upstream = 0.25779 Motif number 4 TCTTTCGTGACGACCCAGCCACGCAGCGC 1 9 0 CGACCCGCCA 0.843263 -292 CGGCAGCGACGAACCCTGCGCGGACCGGACA 1 63 0 GAACCCGCGC 0.964082 -238 TCGCTGCCGCGAGCCAGGCGACTGGGCGCAT 1 85 1 GAGCCAGCGA 0.668856 -216 ACAAATAATTGAGCCGAGCAACGACCGAGCG 1 267 1 GAGCCGGCAA 0.844953 -34 AGCCGAGCAACGACCGAGCGAGAGGGTGAGC 1 278 1 CGACCGGCGA 0.929604 -23 GGCGAATATTGAACCACGCCAGGAACCGTCG 2 48 1 GAACCAGCCA 0.423232 -253 CTCCGAGTGTGAATCCTGCGACGCGACATGC 2 150 1 GAATCCGCGA 0.629883 -151 CGTGTGGTTCACACCCGGCGATGATGCCCGC 2 192 1 ACACCCGCGA 0.678861 -109 ATGATGCCCGCCGCCCCGCGGCGCGCCTAAG 2 212 1 CCGCCCGCGG 0.852501 -89 CCCGCCTCCTCAGCCCGCCGCCTCGCGGCGC 2 250 1 CAGCCCCCGC 0.889093 -51 CAGACGAGATCCACCGCCCGCTCCGGAACCC 3 20 0 CCACCGCCGC 0.884275 -66 TGAGCTCCGACCGCCCAGCCAGACGAGATCC 3 39 0 CCGCCCGCCA 0.936925 -47 GGTCGGAGCTCACCCGCACACAATAGGGTGG 3 58 1 CACCCGACAC 0.152491 -28 CTGGCTCAGCCAACCCCGCGAACTTAGCTTG 4 47 0 CAACCCGCGA 0.983353 -254 GGGCATGACTGCACCCAGTAAGGTATCCGGC 4 133 1 GCACCCGTAA 0.162516 -168 AGTTGTCATTTCGCCGCGCGACGTGTTGAAG 4 172 1 TCGCCGGCGA 0.55445 -129 TCGTGACGCCAGCGCAGCTAATCGC 4 286 0 GACGCCGCGC 0.647607 -15 GCTCATCTCACCGCCGGGCGTTCCGGTGAAT 6 111 1 CCGCCGGCGT 0.550572 -91 CCACCGGGTGCGAGCCTGCGAGTCCGAAGAC 8 125 1 CGAGCCGCGA 0.702035 -176 AGGCGATGAGCCGCCGGGCGCGGCGCGTCCG 8 169 0 CCGCCGGCGC 0.537052 -132 GCACACCGATGCACCCGGCAACAGGCACGGC 8 217 0 GCACCCGCAA 0.904288 -84 GGGCGGTGAACCACCCGTCGATCGAAGGACA 8 276 1 CCACCCTCGA 0.748205 -25 CTCCGCGGTGCAACCCAACAAGGATCATCGT 9 112 0 CAACCCACAA 0.403291 -189 TGCGTCAACGCAACCCTGCCAATTTTCGCCG 9 147 0 CAACCCGCCA 0.946115 -154 ACCATGGCGCGACACGCGCGATAGGTCGCCC 9 178 1 GACACGGCGA 0.395003 -123 CGGACCTGCTCAACCGGTCGACGACGGCCGA 9 265 0 CAACCGTCGA 0.676421 -36 CCCCGCCGGCCGACGATGCGGGC 10 3 1 CCGCCGCCGA 0.874199 -132 CCCGTGGGGGGAACCCGCCCAGGAGCGCCA 10 115 1 GAACCCCCCA 0.739094 -20 GACCCGTACAGAACCGGCCGCCGGACCCG 12 9 0 GAACCGCCGC 0.827945 -119 TCAGCTCGTCCAATCGAGCAAGGGATCGTCC 12 53 0 CAATCGGCAA 0.308989 -75 GCCCAGGCTCCCGCCGTGCCCGCGACAACGA 13 54 0 CCGCCGGCCC 0.877603 -143 CCACAATTCCGACACGCGCGATAGTTAGAGG 13 139 0 GACACGGCGA 0.395003 -58 CTACGGCGTCCACCCGGGCGACGATGCGAAC 14 20 1 CACCCGGCGA 0.95773 -206 GCGACGATGCGAACCGTGCACGTCGTCTGAG 14 37 1 GAACCGGCAC 0.8221 -189 CGCCGTCGGTCAGCCCCGCAGG 15 2 0 CAGCCCGCAG 0.607635 -103 CAGATTACTAGCAGCCCGCGCGGGCCCCTAG 18 23 1 GCAGCCGCGC 0.783563 -260 TGCTGGCCGGCAACCCTCCAACCGCGGTGGG 18 167 1 CAACCCCCAA 0.774382 -116 TCACCCGGGGCACCCCACCGCGGTTGGAGGG 18 180 0 CACCCCCCGC 0.841501 -103 CGCTTGCCGCGCAGCCGGCGATGGCTACTCA 18 220 0 GCAGCCGCGA 0.83571 -63 GACTCGCCCCCGCCAGCCTGCCCAG 19 103 0 CGCCCCGCCA 0.738835 -15 ****** **** Masking position 5 Map Score: 49.0438 Number of sites scoring better than the average of aligned sites = 16398 Number in coding regions = 15156 Number in noncoding regions = 1242 Number of orfs with sites within 600 bp upstream = 817 Fraction of orfs with sites within 600 bp upstream = 0.131224 Motif number 5 TCGGATGGCTTGGGTTATCAGGTCACTCAG 1 176 1 TGGGTTATCA 0.203002 -125 ACCGAGCGAGAGGGTGAGCTG 1 290 1 AGGGTGAGCT 0.866844 -11 CTATTGTGTGCGGGTGAGCTCCGACCGCCC 3 54 0 CGGGTGAGCT 0.967202 -32 TTCGCGGGGTTGGCTGAGCCAGAGGCTCAG 4 56 1 TGGCTGAGCC 0.873782 -245 TGTGACGAAGCGGCTGAGCCTCTGGCTCAG 4 69 0 CGGCTGAGCC 0.917692 -232 ATGACAACTCTGGGTGAGCCGGATACCTTA 4 151 0 TGGGTGAGCC 0.976551 -150 ACGACCTCCACCGGGGCGCCGTCGCTGATC 4 232 0 CCGGGGCGCC 0.797422 -69 CAGCTGAACTAGGGTGAACTAGGCGGGACT 6 160 0 AGGGTGAACT 0.28381 -42 CGGACGGTCGGGTGGGCAGTGCAGTCCC 7 14 0 CGGGTGGGCA 0.817099 -18 TCGCACCCGGTGGGTGCTCCTACTGGCCGT 8 108 0 TGGGTGCTCC 0.971689 -193 CGATAGCTCTCGAGTGCTCTCTCAGCTGTT 9 30 0 CGAGTGCTCT 0.719976 -271 GCCCCAAACGCGGGTGCTCAGCATCATCGG 9 72 0 CGGGTGCTCA 0.946434 -229 CGCCCAACCGCGAGTGATCCCCGGCACTGC 9 204 1 CGAGTGATCC 0.732477 -97 CCCGTATGCGGGGGTACGCCCACCACAGGC 10 40 0 GGGGTACGCC 0.751371 -95 CTGTATCCGGTGGGTACGCAAGGCACGCTA 13 87 0 TGGGTACGCA 0.822033 -110 CACGCCACGTCGGCGGCGCTTCTTAGACTG 13 172 1 CGGCGGCGCT 0.836684 -25 CATCCTTCTTTGGGGGCTCACAGGGATCCG 15 76 0 TGGGGGCTCA 0.842903 -29 CGCACAGTACTGGGTACTCTGCGAGGATGA 17 43 0 TGGGTACTCT 0.709586 -48 GCGGCAAGCGCGGGTCCGCCATGACGGGCC 18 241 1 CGGGTCCGCC 0.91328 -42 GCCCTGAAGTAGGGTGAGCTGGTGTTGGGG 19 57 1 AGGGTGAGCT 0.866844 -61 GAGCTGGTGTTGGGGGCTCCGCTGATGGGC 19 72 1 TGGGGGCTCC 0.943827 -46 AACCATTCATTGAGGACGCCAGCA 20 5 0 TGAGGACGCC 0.428094 -57 ********** Masking position 9 Map Score: 21.6289 Number of sites scoring better than the average of aligned sites = 6647 Number in coding regions = 6128 Number in noncoding regions = 519 Number of orfs with sites within 600 bp upstream = 409 Fraction of orfs with sites within 600 bp upstream = 0.0656923 Motif number 6 CAGCTCACCCTCTCGCTCGGTCGTTGCT 1 283 0 CCACCTTGCC 0.946832 -18 GCTTGCACCCGACTGCCGATCGCGGCGCGCCGGCT 2 111 1 GCTCCGTGCG 0.773392 -190 GTGTGAACCACACGACGGCTGGCCGGCATGTCGCG 2 171 0 CCGCGGTGCG 0.873382 -130 CCGCCCGCTCCGGAACCCCTGGCGCCG 3 3 0 CGACCCTGCC 0.868908 -83 TCAGACTCTTTGGCTGTGGCACCTAA 4 2 1 CGATCTTGCG 0.564611 -299 GACGAAGCGGCTGAGCCTCTGGCTCAGCCAACCCC 4 61 0 CGACCTTGCC 0.963698 -240 ATCCGGTCCTCAGGTACTGTAGTCCCGCCTAGTTC 6 140 1 CGGACTTGTC 0.711605 -62 TGGTGAGAATCCGGGACTGTCCCGCAGCGGTATGC 8 17 1 CGGACTTCCC 0.783898 -284 CAGCGGTATGCAGGAACGACCGCCGTCTTGGAAGT 8 41 1 CGGACGCGCG 0.932672 -260 GGTCTTCGGACTCGCAGGCTCGCACCCGGTGGGTG 8 122 0 CCGAGGTGCC 0.7371 -179 GACCTGCCAGCCGTGCCGGACGCGCCGCGCCCGGC 8 153 1 CGTCCGAGCC 0.72205 -148 CCGGACGCGCCGCGCCCGGCGGCTCATCGCCTCGT 8 168 1 CCGCCGCGCC 0.963995 -133 GGGCGTTTGGCCGTGCCTGTTGCCGGGTGCATCGG 8 208 1 CGTCCTTGCG 0.971234 -93 GGATCGGCTGCGCGTCCGCGGGCGGTGAACCACCC 8 257 1 CCGCCGGGCG 0.875425 -44 TCGGACATTGCCCTGACGATAGCTCTCGAGTGCTC 9 41 0 CCTACGTGCC 0.906101 -260 CTCGCGGTTGGGCGACCTATCGCGCGTGTCGCGCC 9 183 0 GCGCCTTGCC 0.912093 -118 ACGCCCACCACAGGCCTTCCGGCCCGCATCGTCGG 10 20 0 CGGCTTCGCC 0.579514 -115 CGGGTCCGGCGGCCGGTTCTGTACG 12 1 1 CGGCCGCGCG 0.973563 -127 TAGTGTATTCCTCTAACTATCGCGCGTGTCGGAAT 13 130 1 CCTACTTGCC 0.902051 -67 CCTGCCTCAGCTGAGACTCTTGTGGCAGCTGTGAC 14 126 1 CGAACTTGTG 0.36007 -100 TACGCTCTTGCAGTCACTGTAGCCGCCGTCGGTCA 15 21 0 CGTACTTGCG 0.926852 -84 GCACCCGTCCTCTCGCACTCGTTGTGAC 17 73 0 CCGCCTTGCC 0.986334 -18 AGCAGCCCGCGCGGGCCCCTAGCGGCCGGTAAAGG 18 32 1 GGGCCCTGCG 0.780697 -251 GCGGTCTCAACTGGCCCTTTACCGGCCGCTAGGGG 18 47 0 CGGCCTTCCG 0.903695 -236 ATGACTACATCGGTTACTGTAGCCGG 20 46 1 CGTACTTGCG 0.926852 -16 * ** *** * ** * Masking position 13 Map Score: 30.4122 Number of sites scoring better than the average of aligned sites = 10432 Number in coding regions = 9791 Number in noncoding regions = 641 Number of orfs with sites within 600 bp upstream = 521 Fraction of orfs with sites within 600 bp upstream = 0.0836813 Motif number 7 TCCGGTCCGCGCAGGGTTCGTCGCTGCCGCGAGC 1 65 1 GCAGGTGTGC 0.753109 -236 ACAGGCAGATGTGAGCGGAGTTGCGAAAATAGAC 1 235 1 GTGGCGGTGC 0.883247 -66 GAATATTGAACCACGCCAGGAACCGTCGGGCGGT 2 51 1 CCAGCAGACC 0.603797 -250 CGGCTGGCCGGCATGTCGCGTCGCAGGATTCACA 2 157 0 GCAGTGGTGC 0.98255 -144 ATCGGCTTAGGCGCGCCGCGGGGCGGCGGGCATC 2 214 0 GCGGCGGGGC 0.780232 -87 CGCGGCGCGCCTAAGCCGATTGCCCGCCTCCTCA 2 228 1 CTAGCGTTCC 0.276899 -73 GTCCGATACAGCATGTGACGAAGCGGCTGAGCCT 4 78 0 GCAGTAGAGC 0.771359 -223 TAGACTCGAGGCACGCAAGTTTGCGATCAGCGAC 4 208 1 GCAGCATTGC 0.794822 -93 CGAGTCTGGTCCAAGTCTTGTTGCGCGATTAGCT 4 262 1 CCAGTTGTGC 0.935974 -39 CCACGATGATCCTTGTTGGGTTGCACCGCGGAGA 9 110 1 CCTGTGGTGC 0.919655 -191 GGCGCGACACGCGCGATAGGTCGCCCAACCGCGA 9 183 1 GCGGAAGTGC 0.558675 -118 ACTGGTGGCGGCAGGTGGCGTCGCAACTCGCAGT 9 229 0 GCAGTGGTGC 0.982585 -72 CTCCTGAGAAGTAAGTGATGTGGCTGCGAACTTC 13 16 1 GTAGTAGTGC 0.858001 -181 GAATTGTGGCCCACGCCACGTCGGCGGCGCTTCT 13 161 1 CCAGCAGTGG 0.756443 -36 GACGTGCACGGTTCGCATCGTCGCCCGGGTGGAC 14 27 0 GTTGCTGTGC 0.555005 -199 GTAGCGATGGCCACGCTTTGTCGCGCTGAGGTGG 14 80 1 CCAGCTGTGC 0.966311 -146 GCTGAGGTGGGCACGTTGTGTGCCTGCCTCAGCT 14 104 1 GCAGTGGTCC 0.928555 -122 CAGCTGTGACCGATGCGACGTCGCGGTACCTGGC 14 151 1 CGAGCAGTGC 0.812475 -75 AAGAGCGTACCTAGGCTAAGTAGCCCGCTCGGAT 15 47 1 CTAGCAGTGC 0.922175 -58 TGTCAAATCCCAACGTGGTGTGGCTCATGAGGAG 16 76 1 CAAGTGGTGC 0.748893 -33 GACCCGTCATCCTCGCAGAGTACCCAGTACTGTG 17 37 1 CCTGCGGTCC 0.837991 -54 CGGGTGATGACCAGGTTGAGTAGCCATCGCCGGC 18 204 1 CCAGTGGTGC 0.982585 -79 *** ** * ** ** Masking position 5 Map Score: 23.0161 Number of sites scoring better than the average of aligned sites = 4230 Number in coding regions = 3824 Number in noncoding regions = 406 Number of orfs with sites within 600 bp upstream = 342 Fraction of orfs with sites within 600 bp upstream = 0.0549309 Motif number 8 CTGCGTGGCTGGGTCGTCACGAAAGACACG 1 14 1 GGGTCGTCAC 0.596371 -287 CATCATCGCCGGGTGTGAACCACACGACGG 2 188 0 GGGTGTGAAC 0.518513 -113 CGCCGCGGGGCGGCGGGCATCATCGCCGGG 2 205 0 CGGCGGGCAT 0.838802 -96 CCAGACTCGACGACCTCCACCGGGGCGCCG 4 241 0 CGACCTCCAC 0.914941 -60 TCCGGGACTGCACTGCCCACCCG 7 4 1 GGGACTGCAC 0.63643 -28 GACTGGGAAGCGACGGCCAGTAGGAGCACC 8 96 1 CGACGGCCAG 0.755482 -205 GGGCGCGGCGCGTCCGGCACGGCTGGCAGG 8 155 0 CGTCCGGCAC 0.796311 -146 CCGGGTGCATCGGTGTGCACCTCAATCGGA 8 230 1 CGGTGTGCAC 0.960968 -71 GCGACGCCACCTGCCGCCACCAGTCGTCGG 9 239 1 CTGCCGCCAC 0.784827 -62 ATACTGTATCCGGTGGGTACGCAAGGCACG 13 90 0 CGGTGGGTAC 0.887256 -107 GGTCAGCCTACGGCGTCCACCCGGGCGACG 14 13 1 CGGCGTCCAC 0.985359 -213 CCGCCTCAGACGACGTGCACGGTTCGCATC 14 42 0 CGACGTGCAC 0.935243 -184 GCTACTAGCCGGGCCGCCTCAGACGACGTG 14 55 0 GGGCCGCCTC 0.736456 -171 CGGCTAGTAGCGATGGCCACGCTTTGTCGC 14 74 1 CGATGGCCAC 0.959359 -152 TGTCGCGCTGAGGTGGGCACGTTGTGTGCC 14 98 1 AGGTGGGCAC 0.781985 -128 GGCTGACCGACGGCGGCTACAGTGACTGCA 15 18 1 CGGCGGCTAC 0.955579 -87 GGGAGTCCACATCAGATTAC 18 1 1 GGGAGTCCAC 0.814409 -282 ACAACTCCGGCGGTCTCAACTGGCCCTTTA 18 61 0 CGGTCTCAAC 0.63087 -222 GCGCAGCCGGCGATGGCTACTCAACCTGGT 18 213 0 CGATGGCTAC 0.759191 -70 GACGCATACCGGACGGCCACGCTGGGGCCA 19 26 0 GGACGGCCAC 0.956828 -92 ********** Masking position 9 Map Score: 19.7241 Number of sites scoring better than the average of aligned sites = 16655 Number in coding regions = 15719 Number in noncoding regions = 936 Number of orfs with sites within 600 bp upstream = 642 Fraction of orfs with sites within 600 bp upstream = 0.103116 Motif number 9 TACCGCCCGACGGTTCCTGGCGTGGTTCAA 2 56 0 CGGTTCCTGG 0.72292 -245 ATCCGGTCCTCAGGTACTGTAGTCCCGCCT 6 140 1 CAGGTACTGT 0.875057 -62 TCCGGGACTGCACTGCCCACC 7 2 1 CCGGGACTGC 0.98239 -30 TGGTGAGAATCCGGGACTGTCCCGCAGCGG 8 17 1 CCGGGACTGT 0.963166 -284 AAGACGGCGGTCGTTCCTGCATACCGCTGC 8 40 0 TCGTTCCTGC 0.565831 -261 TCGTTGAGACCAGTGCTTGTCTACTTCCAA 8 68 0 CAGTGCTTGT 0.18739 -233 CGCGGCGCGTCCGGCACGGCTGGCAGGTCT 8 152 0 CCGGCACGGC 0.826984 -149 GGGCGTTTGGCCGTGCCTGTTGCCGGGTGC 8 208 1 CCGTGCCTGT 0.942364 -93 CGAGTGATCCCCGGCACTGCGAGTTGCGAC 9 214 1 CCGGCACTGC 0.950317 -87 TTTCGGCTTTCCGGACCTGCTCAACCGGTC 9 277 0 CCGGACCTGC 0.918522 -24 GGCGGCCTGACAGGGCCAGCTCACAATTCA 10 75 1 CAGGGCCAGC 0.747441 -60 CGGGTCCGGCGGCCGGTTCT 12 1 1 CGGGTCCGGC 0.891865 -127 GGTCCGGCGGCCGGTTCTGTACGGGTCCTG 12 13 1 CCGGTTCTGT 0.755122 -115 CGGTTCTGTACGGGTCCTGGACAGGTGCTG 12 24 1 CGGGTCCTGG 0.875242 -104 CAGGCTCCCGCCGTGCCCGCGACAACGATG 13 52 0 CCGTGCCCGC 0.90228 -145 AGCGCTCTGCCAGGTACCGCGACGTCGCAT 14 163 0 CAGGTACCGC 0.798887 -63 ACGGCGGCTACAGTGACTGCAAGAGCGTAC 15 27 1 CAGTGACTGC 0.880636 -78 CGCAGAGTACCCAGTACTGTGCGGTCACAA 17 50 1 CCAGTACTGT 0.48948 -41 ATGACTACATCGGTTACTGTAGCCGG 20 46 1 CGGTTACTGT 0.768216 -16 ********** Masking position 9 Map Score: 16.4739 Number of sites scoring better than the average of aligned sites = 9154 Number in coding regions = 8628 Number in noncoding regions = 526 Number of orfs with sites within 600 bp upstream = 397 Fraction of orfs with sites within 600 bp upstream = 0.0637649 Motif number 10 TGCGTGGCTGGGTCGTCACGAAAGACACGG 1 15 1 GGTCGTCACG 0.891867 -286 ATGGCTAAGCGGTCATCAAGTTCGGATGGC 1 155 1 GGTCATCAAG 0.525595 -146 CGCCGCGATCGGCAGTCGGGTGCAAGCAAG 2 108 0 GGCAGTCGGG 0.812185 -193 CCCCGGTGGAGGTCGTCGAGTCTGGTCCAA 4 246 1 GGTCGTCGAG 0.9384 -55 GCGTGTGCCTGGCCGGCAGGCGCCTGAGAC 5 28 1 GGCCGGCAGG 0.953436 -29 CGGTGAATCCGGTCCTCAGGTACTGTAGTC 6 134 1 GGTCCTCAGG 0.960442 -68 GCTGTCCTTCGATCGACGGGTGGTTCACCG 8 279 0 GATCGACGGG 0.67855 -22 ACTCGAGAGCTATCGTCAGGGCAATGTCCG 9 45 1 TATCGTCAGG 0.662763 -256 CCGCATCGTCGGCCGGCGGGG 10 2 0 GGCCGGCGGG 0.956867 -133 GCCCACCACAGGCCTTCCGGCCCGCATCGT 10 23 0 GGCCTTCCGG 0.881784 -112 TCCCCCCACGGGGCGTTCGGCCTGAATTGT 10 97 0 GGGCGTTCGG 0.699689 -38 TCGAGCAAGGGATCGTCCAGCACCTGTCCA 12 41 0 GATCGTCCAG 0.816665 -87 AGCCGAATTATATCCTCAGGCATCAATCTC 12 82 0 TATCCTCAGG 0.380894 -46 GGCGTGGTCCTTCGGGTTCCCTACG 17 6 1 GGTCCTTCGG 0.777649 -85 GCCCCAGCGTGGCCGTCCGGTATGCGTCGG 19 28 1 GGCCGTCCGG 0.989547 -90 ********** Masking position 10 Map Score: 10.036 Number of sites scoring better than the average of aligned sites = 6121 Number in coding regions = 5691 Number in noncoding regions = 430 Number of orfs with sites within 600 bp upstream = 372 Fraction of orfs with sites within 600 bp upstream = 0.0597494 Motif number 11 TACGAATGACTTGGCCTACGTAGGCGCTTC 2 15 1 TTGGCCTACG 0.825267 -286 GGCAGGATTACCGCCCGACGGTTCCTGGCG 2 64 0 CCGCCCGACG 0.951044 -237 TGCCCGCGAGTCGGCCGACTTGCTTGCACC 2 90 1 TCGGCCGACT 0.85745 -211 CGCGCCGCGATCGGCAGTCGGGTGCAAGCA 2 110 0 TCGGCAGTCG 0.60677 -191 ACTCGGAGCATGAGCCGGCGCGCCGCGATC 2 128 0 TGAGCCGGCG 0.703822 -173 AGGCGGGCAATCGGCTTAGGCGCGCCGCGG 2 227 0 TCGGCTTAGG 0.0988993 -74 CTAGCTTAAGCGCGCCGACGATACGCGCCG 2 275 0 CGCGCCGACG 0.846536 -26 ACAAACAATTACGGCAGGCGGCCAGTGCCG 6 46 1 ACGGCAGGCG 0.620102 -156 ATTCACCGGAACGCCCGGCGGTGAGATGAG 6 112 0 ACGCCCGGCG 0.725577 -90 GTATGCAGGAACGACCGCCGTCTTGGAAGT 8 46 1 ACGACCGCCG 0.630903 -255 GGTGCTCCTACTGGCCGTCGCTTCCCAGTC 8 96 0 CTGGCCGTCG 0.794017 -205 CACGAGGCGATGAGCCGCCGGGCGCGGCGC 8 174 0 TGAGCCGCCG 0.703822 -127 GTGCTGTCCTTCGATCGACGGGTGGTTCAC 8 281 0 TCGATCGACG 0.447216 -20 CCGGTCGACGACGGCCGACGACTGGTGGCG 9 253 0 ACGGCCGACG 0.988383 -48 ACCTGCTCAACCGGTCGACGACGGCCGACG 9 263 0 CCGGTCGACG 0.926249 -38 CCCCGCCGGCCGACGATGCGGGCCG 10 6 1 CCGGCCGACG 0.994708 -129 CCGTACAGAACCGGCCGCCGGACCCG 12 7 0 CCGGCCGCCG 0.98261 -121 TGTCGGAATTGTGGCCCACGCCACGTCGGC 13 156 1 GTGGCCCACG 0.353 -41 TCTAAGAAGCGCCGCCGACGTGGCGTGGGC 13 169 0 GCCGCCGACG 0.873308 -28 CTGGTCAGCCTACGGCGTCCACCC 14 5 1 TCAGCCTACG 0.846129 -221 CGGCGTCCACCCGGGCGACGATGCGAACCG 14 23 1 CCGGGCGACG 0.913461 -203 CCGGGCCGCCTCAGACGACGTGCACGGTTC 14 47 0 TCAGACGACG 0.551283 -179 GCAAGGATAGTCGGCCTATGAAATTTCCTC 14 203 0 TCGGCCTATG 0.526531 -23 AGCGGGCTACTTAGCCTAGGTACGCTCTTG 15 46 0 TTAGCCTAGG 0.0769791 -59 ACCCTACTTCAGGGCCGACGCATACCGGAC 19 42 0 AGGGCCGACG 0.954 -76 ********** Masking position 10 Map Score: 23.4214 Number of sites scoring better than the average of aligned sites = 19777 Number in coding regions = 18640 Number in noncoding regions = 1137 Number of orfs with sites within 600 bp upstream = 727 Fraction of orfs with sites within 600 bp upstream = 0.116768 Motif number 12 CGGCAAAGGAGAATCCGTGTCTTTCGTGACGA 1 27 0 GAACCGTGCT 0.91441 -274 GCGTTCCGGTGAATCCGGTCCTCAGGTACTGT 6 128 1 GAACCGGTCT 0.982288 -74 CTAGGGTGAACTAGGCGGGACTACAGTACCTG 6 150 0 CTAGCGGGCT 0.835707 -52 AACCTGGTGAGAATCCGGGACTGTCCCGCAGC 8 13 1 GAACCGGGCT 0.990907 -288 CCCAGTCGTTGAGACCAGTGCTTGTCTACTTC 8 71 0 GAGCCAGTCT 0.842243 -230 CGGGTCCGGCGGCCGGTTCTGTACGGGTCC 12 9 1 GCGCCGGTCT 0.908367 -119 GCCATCGCTACTAGCCGGGCCGCCTCAGACGA 14 59 0 CTACCGGGCG 0.890809 -167 TCCTCGCAGAGTACCCAGTACTGTGCGGTCAC 17 46 1 GTACCAGTCT 0.871934 -45 TGCCGGCCAGCAAGCCGGGGCTTGACGCTGGC 18 147 0 CAACCGGGCT 0.982504 -136 *** ***** ** Masking position 6 Map Score: 2.94682 Number of sites scoring better than the average of aligned sites = 843 Number in coding regions = 772 Number in noncoding regions = 71 Number of orfs with sites within 600 bp upstream = 67 Fraction of orfs with sites within 600 bp upstream = 0.0107613 Motif number 13 CGTGACGACCCAGCCACGCAGCGC 1 2 0 CACACGAGCG 0.674088 -299 GCCCAGTCGCCTGGCTCGCGGCAGCGACGAACC 1 79 0 CTCTCGGGCA 0.66537 -222 GTGGCGGCAACCATGTCGGAGCCGGATGGATGG 1 126 1 CCGTCGAGCC 0.961112 -175 GTTGCCCCCACCTCCTCATAGCAAAAGTACACA 1 205 1 CCCTCAAGCA 0.95355 -96 AGCAAGTCGGCCGACTCGCGGGCAGGATTACCG 2 81 0 CCCTCGGGGC 0.864596 -220 TCGCAGGATTCACACTCGGAGCATGAGCCGGCG 2 138 0 CACTCGAGCA 0.908693 -163 CCTCAGCCCGCCGCCTCGCGGCGCGTATCGTCG 2 257 1 CCCTCGGGCG 0.976772 -44 GCCCCGTGGCTCATCTCACCGCCGGGCGTTCCG 6 103 1 TCCTCACGCC 0.702481 -99 TTCGGACTCGCAGGCTCGCACCCGGTGGGTGCT 8 120 0 CACTCGACCC 0.673799 -181 GCCGCGCCCGGCGGCTCATCGCCTCGTGGAATG 8 176 1 GCCTCACGCC 0.777752 -125 TCACCGCCCGCGGACGCGCAGCCGATCCGATTG 8 252 0 CGCGCGAGCC 0.691033 -49 CTGAGGCGGCCCGGCTAGTAGCGATGGCCACGC 14 63 1 CCCTAGAGCG 0.795541 -163 CACAACGTGCCCACCTCAGCGCGACAAAGCGTG 14 91 0 CCCTCACGCG 0.955917 -135 CTGCCAGGTACCGCGACGTCGCATCGGTCACAG 14 154 0 CCGACGCGCA 0.537134 -72 GGCTAAGTAGCCCGCTCGGATCCCTGTGAGCCC 15 60 1 CCCTCGATCC 0.900595 -45 CTACTCAGTGCCAACTCAAAGCACAACTCCGGC 18 80 0 CCCTCAAGCA 0.95355 -203 GCGCTCATGACCGACTCGAAGCCTAGCGCATGG 18 116 0 CCCTCGAGCC 0.994557 -167 CCCCCGCCAGCCTGCCCAGCGCCCATCAGCGGA 19 89 0 CCCCCACGCC 0.865945 -29 ** **** **** Masking position 7 Map Score: 14.8789 Number of sites scoring better than the average of aligned sites = 5752 Number in coding regions = 5268 Number in noncoding regions = 484 Number of orfs with sites within 600 bp upstream = 407 Fraction of orfs with sites within 600 bp upstream = 0.065371 Motif number 14 ********** No masking Map Score: 1.06464e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 GTGAGCGGAGTTGCGAAAATAGACAAATAATT 1 245 1 TGCGAAAATG 0.876728 -56 GGCGCTTCTTCGGCGAATATTGAACCACGCCA 2 37 1 CGCGAATATG 0.963061 -264 TCAGCCAACCCCGCGAACTTAGCTTGACAGTC 4 41 0 CGCGAACTTG 0.980247 -260 GCGGAGATGTCGGCGAAAATTGGCAGGGTTGC 9 137 1 CGCGAAAATG 0.978711 -164 AGTGATGTGGCTGCGAACTTCGACATCGTTGT 13 29 1 CGCGAACTTG 0.980247 -168 TGTAAATACGCGGCGAAGCTAGT 16 2 0 CGCGAAGCTG 0.957745 -107 * ******** * Masking position 6 Map Score: 1.13526 Number of sites scoring better than the average of aligned sites = 175 Number in coding regions = 153 Number in noncoding regions = 22 Number of orfs with sites within 600 bp upstream = 27 Fraction of orfs with sites within 600 bp upstream = 0.00433665