AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00272_mtub_reg_100.orf -o00272_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 glyA2 300 glyA2 #2 aspC 30 aspC #3 Rv0338c 108 hypothetical protein Rv0338c #4 purT 300 purT #5 cysM3 202 cysM3 #6 Rv0858c 156 hypothetical protein Rv0858c #7 lipU 300 lipU #8 cysM2 56 cysM2 #9 pra 201 pra #10 metB 31 metB #11 fdxC 212 fdxC #12 Rv1178 32 hypothetical protein Rv1178 #13 Rv1335 21 hypothetical protein Rv1335 #14 cysS2 57 cysS2 #15 cysQ 90 cysQ #16 cysK 300 cysK #17 metC 282 metC #18 fadD3 47 fadD3 #19 cysS 64 cysS #20 Rv3583c 285 hypothetical protein Rv3583c #21 ponA' 300 ponA' #22 Rv3683 68 hypothetical protein Rv3683 #23 Rv3684 62 hypothetical protein Rv3684 Motif number 1 CACCGACCGTGCCTGACCGAAGGTGTAGAG 1 29 1 GCCTGACCGA 0.738943 -272 GCGCCATGATGCGACGCCGCAGACTCTCAG 1 61 1 GCGACGCCGC 0.775225 -240 GCTGGTTGCGCCCTCCCCGCTCTGTCCTGA 1 94 0 CCCTCCCCGC 0.827589 -207 CCCGGATCGCGCCGGGCTGGTTGCGCCCTC 1 109 0 GCCGGGCTGG 0.946678 -192 CATCGTTTCGGCCACGGCGAGGTCGCCAAC 1 186 0 GCCACGGCGA 0.915199 -115 AACGATGTCGCGGCCGCCGGATGCCCATTT 1 209 1 CGGCCGCCGG 0.859573 -92 CCATTTGGCCGGGCAGCCGATTGCTCCGGG 1 233 1 GGGCAGCCGA 0.942217 -68 ACACCCTTGACCGCCCCCGAGTACGCCGAA 1 264 1 CCGCCCCCGA 0.846547 -37 GCGCTGCGTGGCTGGGTCGTCACGA 4 6 1 GCGTGGCTGG 0.785133 -295 ACGAACCCTGCGCGGACCGGACAGCTTCGG 4 56 0 CGCGGACCGG 0.929094 -245 CGCCTGGCTCGCGGCAGCGACGAACCCTGC 4 75 0 GCGGCAGCGA 0.913776 -226 ACATGGTTGCCGCCACCCGAATAGGTATGC 4 112 0 CGCCACCCGA 0.906759 -189 AGCCATCCATCCGGCTCCGACATGGTTGCC 4 131 0 CCGGCTCCGA 0.714942 -170 CCGGATGGATGGCTAAGCGGTCATCAAGTT 4 147 1 GGCTAAGCGG 0.710988 -154 GAGGAGGTGGGGGCAACTGAGTGACCTGAT 4 192 0 GGGCAACTGA 0.491527 -109 GGGGTCAGCGCCAGGCGGTGGTGGCCAT 5 9 1 CGCCAGGCGG 0.962072 -194 TGGGGGTCAGCGGTCACCGGCGATGGCGAA 5 38 0 CGGTCACCGG 0.871055 -165 GAAGTCACACGCGGCACTGGATGGGGGTCA 5 59 0 GCGGCACTGG 0.902896 -144 CGTGTGACTTCCGGCCCCGATGCAGAAGCG 5 78 1 CCGGCCCCGA 0.790184 -125 AGATACTCCTGGCCAACCGGGCGCACCGCA 5 178 1 GGCCAACCGG 0.945106 -25 CACCCTAACAGGGCCCCCGGCCAACCTGTT 6 82 1 GGGCCCCCGG 0.975583 -75 GACGATGCGCGCCGCAGCGATACCTTGCCC 6 116 0 GCCGCAGCGA 0.937271 -41 GGCGGTCGAGCCTATCCGGGCGACGATGC 6 138 0 GCCTATCCGG 0.701924 -19 TTCAACACGTCGCGCGGCGAAATGACAACT 7 172 0 CGCGCGGCGA 0.96329 -129 GATCAGCGACGGCGCCCCGGTGGAGGTCGT 7 232 1 GGCGCCCCGG 0.989415 -69 GAGCGCGTGTGCCTGGCCGGCAGGCGCCTG 8 24 1 GCCTGGCCGG 0.961592 -33 CGGCGCGCCTGCCTGCGCGA 9 1 0 GCCTGCGCGA 0.776933 -201 CGCGCAGGCAGGCGCGCCGCAATTTAGTTC 9 12 1 GGCGCGCCGC 0.965557 -190 CAAACAATTACGGCAGGCGGCCAGTGCCGC 9 47 1 CGGCAGGCGG 0.924557 -155 CACGACCTGTGCGGCACTGGCCGCCTGCCG 9 57 0 GCGGCACTGG 0.902896 -145 TGACCCATTGGGCCCCGTGGCTCATCTCAC 9 92 1 GGCCCCGTGG 0.932871 -110 TTCACCGGAACGCCCGGCGGTGAGATGAGC 9 111 0 CGCCCGGCGG 0.987184 -91 GGACTGCACTGCCCACCCGACCGTCCG 10 15 1 GCCCACCCGA 0.949968 -17 CAGCATAGACGGCAAGCCGGATTGCTATGC 11 16 1 GGCAAGCCGG 0.911548 -197 GCCTCAGCAGGGCCCGGAGGAAGCCTTGGC 11 136 1 GGCCCGGAGG 0.816764 -77 AGGAAGCCTTGGCGAGGTGGACAGCAGCCC 11 153 1 GGCGAGGTGG 0.856869 -60 CGGGTGCTGCCCCCAGCCGGC 12 2 0 CCCCAGCCGG 0.955759 -31 TCCGCCGCGAGCGGGTGCTGCCCC 12 19 0 CCGCGAGCGG 0.75927 -14 CTGAGCAGCCCGCGCGCCGA 14 1 0 CGCGCGCCGA 0.977583 -57 GACTCTAAACGGCCCGGTGACTCCAGCCTT 14 32 0 GGCCCGGTGA 0.899975 -26 TTCAGTATCGCCGAGCTGAACGCAGGCAT 15 72 0 GCCGAGCTGA 0.842939 -19 TATAGGCCATGGGCCAGCGGGA 16 3 0 GGGCCAGCGG 0.959687 -298 GCTTTATCCTCCCGCGCCGCCTCGCCGTGG 16 63 1 CCCGCGCCGC 0.709943 -238 ACAACAACAGCCCACGGCGAGGCGGCGCGG 16 74 0 CCCACGGCGA 0.885347 -227 CGGCTGTACGCCGCGGGCGAACACCGATTT 16 158 0 CCGCGGGCGA 0.75256 -143 GCGGCGTACAGCCGCCGCGCACTCACGAGT 16 174 1 GCCGCCGCGC 0.892214 -127 TCAGCTGGGAGGCCAACTGGGCCTGGACCG 16 262 1 GGCCAACTGG 0.777775 -39 ATTACTAGCAGCCCGCGCGGGCCCCTAGCG 17 26 1 GCCCGCGCGG 0.96232 -257 CCCGGGGCACCCCACCGCGGTTGGAGGGTT 17 178 0 CCCACCGCGG 0.921884 -105 CGGTGGGGTGCCCCGGGTGATGACCAGGTT 17 191 1 CCCCGGGTGA 0.781594 -92 CGCGCTTGCCGCGCAGCCGGCGATGGCTAC 17 223 0 GCGCAGCCGG 0.619298 -60 GCCCGTCATGGCGGACCCGCGCTTGCCGCG 17 240 0 GCGGACCCGC 0.553017 -43 CCGCCATGACGGGCCCCTGACCAGACGGGG 17 256 1 GGGCCCCTGA 0.864483 -27 GAGCTTTCCCCGTCTGGTCAGGGGCCC 17 266 0 CCCCGTCTGG 0.649107 -17 CCTGCGGCGCGCGCGTCCGGACCAGGAGTG 19 13 0 GCGCGTCCGG 0.54836 -52 CCGGACGCGCGCGCCGCAGGTTGCAGCAAT 19 23 1 GCGCCGCAGG 0.823091 -42 CCGCGCCAAGGCCGAGCAGGAGGCATCCGA 20 11 0 GCCGAGCAGG 0.726649 -275 CCCACCGCTACCGTCGGCGGCACCTAACTA 20 73 0 CCGTCGGCGG 0.700566 -213 GGTAGCGGTGGGGACCGCGGCGTCGACCGG 20 91 1 GGGACCGCGG 0.895031 -195 GGGCTACCGCGCCGGTCCGGTCGACGCCGC 20 107 0 GCCGGTCCGG 0.901323 -179 CCTGAGAACGGGGTGCCCGGGCTACCGCGC 20 125 0 GGGTGCCCGG 0.884737 -161 GGGGCCCTAACGGGCGCCGAACAACGGTGC 20 230 0 CGGGCGCCGA 0.967151 -56 GCGGCATTTCCCCCGGCCGATCCAGACAAG 21 132 0 CCCCGGCCGA 0.966056 -169 ATTTGCGGCTGCGTCACTGGTCAGACCCCG 21 179 0 GCGTCACTGG 0.728405 -122 AAATATCGCGCCCGCCCCGATCCCGCAGTG 21 205 1 CCCGCCCCGA 0.97222 -96 CCGCCCCGATCCCGCAGTGACTCACCCGCC 21 216 1 CCCGCAGTGA 0.684896 -85 AGTGACTCACCCGCCCGCGGAAAGATTCTA 21 231 1 CCGCCCGCGG 0.502186 -70 TGGACCGAGCGGCACGGTGGAGTGACAGGA 21 262 1 GGCACGGTGG 0.802659 -39 CGCGATACAGGCCCCGCCGC 23 1 0 GCCCCGCCGC 0.925564 -62 GGATAGGCTGCGGACCGCGATACAGGCCCC 23 16 0 CGGACCGCGA 0.702151 -47 GCAGCCTATCCCGGAGCTGGACGGACAACG 23 35 1 CCGGAGCTGG 0.813501 -28 GGACGGACAACGCGATCCGG 23 53 1 CGCGATCCGG 0.807952 -10 ********** Masking position 9 Map Score: 122.642 Number of sites scoring better than the average of aligned sites = 94669 Number in coding regions = 88628 Number in noncoding regions = 6041 Number of orfs with sites within 600 bp upstream = 1601 Fraction of orfs with sites within 600 bp upstream = 0.257147 Motif number 2 AAGGTGTAGAGCGGCGCCATGATGCGACGC 1 48 1 GCGGCGCCAT 0.888726 -253 GCGCCATGATGCGACGCCGCAGACTCTCAG 1 61 1 GCGACGCCGC 0.722047 -240 GGCTGGTTGCGCCCTCCCCGCTCTGTCCTG 1 95 0 GCCCTCCCCG 0.450831 -206 AGCCCGGATCGCGCCGGGCTGGTTGCGCCC 1 111 0 GCGCCGGGCT 0.924921 -190 TGGCGACCTCGCCGTGGCCGAAACGATGTC 1 188 1 GCCGTGGCCG 0.910937 -113 TGGGCATCCGGCGGCCGCGACATCGTTTCG 1 206 0 GCGGCCGCGA 0.922065 -95 GGAGCAATCGGCTGCCCGGCCAAATGGGCA 1 230 0 GCTGCCCGGC 0.768854 -71 GCAGCCGATTGCTCCGGGAACACCCTTGAC 1 245 1 GCTCCGGGAA 0.631486 -56 CTTTGCCGAAGCTGTCCGGTCCGCGCAGGG 4 51 1 GCTGTCCGGT 0.641448 -250 AGGGTTCGTCGCTGCCGCGAGCCAGGCGAC 4 77 1 GCTGCCGCGA 0.879013 -224 GCTGCCGCGAGCCAGGCGACTGGGCGCATA 4 87 1 GCCAGGCGAC 0.80675 -214 CATGGTTGCCGCCACCCGAATAGGTATGCG 4 111 0 GCCACCCGAA 0.520532 -190 GGGGTCAGCGCCAGGCGGTGGTGGCCATT 5 10 1 GCCAGGCGGT 0.843005 -193 GCGGTCACCGGCGATGGCGAATGGCCACCA 5 29 0 GCGATGGCGA 0.779091 -174 CGTCGCTTCTGCATCGGGGCCGGAAGTCAC 5 81 0 GCATCGGGGC 0.71783 -122 TACCGGATTTGCCAGCGGCAGGTTGTTGTT 5 120 0 GCCAGCGGCA 0.787108 -83 CAAGGTGCGGTGCGCCCGGTTGGCCA 5 187 0 GCGGTGCGCC 0.9501 -16 CAACAGGTTGGCCGGGGGCCCTGTTAGGGT 6 83 0 GCCGGGGGCC 0.962568 -74 GCAAGGTATCGCTGCGGCGCGCATCGTCGC 6 118 1 GCTGCGGCGC 0.894335 -39 AGACTCTTTGGCTGTGGCACCTAAAAAAGA 7 13 1 GCTGTGGCAC 0.810475 -288 TTGTCATTTCGCCGCGCGACGTGTTGAAGG 7 174 1 GCCGCGCGAC 0.830737 -127 TTTGCGATCAGCGACGGCGCCCCGGTGGAG 7 227 1 GCGACGGCGC 0.865948 -74 GCGATTAGCTGCGCTGGCGTCACGA 7 286 1 GCGCTGGCGT 0.816207 -15 TGCCTGGCCGGCAGGCGCCTGAGACGATGA 8 33 1 GCAGGCGCCT 0.738544 -24 CGGCGCGCCTGCCTGCGCGA 9 1 0 GCCTGCGCGA 0.609486 -201 GAACTAAATTGCGGCGCGCCTGCCTGCGCG 9 12 0 GCGGCGCGCC 0.86778 -190 AACAATTACGGCAGGCGGCCAGTGCCGCAC 9 49 1 GCAGGCGGCC 0.886546 -153 GGTGAGATGAGCCACGGGGCCCAATGGGTC 9 93 0 GCCACGGGGC 0.857446 -109 TCACCGGAACGCCCGGCGGTGAGATGAGCC 9 110 0 GCCCGGCGGT 0.762883 -92 GGTGGGCAGTGCAGTCCCGGA 10 2 0 GCAGTCCCGG 0.417622 -30 CTTGGCACATGCGTCGGCGTACACGGTCAA 11 59 0 GCGTCGGCGT 0.813687 -154 CATTGCCTCAGCAGGGCCCGGAGGAAGCCT 11 132 1 GCAGGGCCCG 0.724053 -81 CCCGGAGGAAGCCTTGGCGAGGTGGACAGC 11 148 1 GCCTTGGCGA 0.592428 -65 GCCGGCTGGGGGCAGCACCCGCTC 12 5 1 GCTGGGGGCA 0.917369 -28 TCCGCCGCGAGCGGGTGCTGCCCCCA 12 17 0 GCGAGCGGGT 0.826103 -16 TCGGCGCGCGGGCTGCTCAGAAA 14 4 1 GCGCGCGGGC 0.500343 -54 CCTGCGTTCAGCTCGGCGATACTGAA 15 75 1 GCTCGGCGAT 0.436973 -16 CCCACTATAGGCCATGGGCCAGCGGGA 16 8 0 GCCATGGGCC 0.894701 -293 ATGGCCTGTTGCATGGGCCCACTATAGGCC 16 25 0 GCATGGGCCC 0.575998 -276 CCACGGCGAGGCGGCGCGGGAGGATAAAGC 16 63 0 GCGGCGCGGG 0.847702 -238 GCGCCGCCTCGCCGTGGGCTGTTGTTGTTG 16 76 1 GCCGTGGGCT 0.93678 -225 GCGGCTGTACGCCGCGGGCGAACACCGATT 16 159 0 GCCGCGGGCG 0.971716 -142 GCGGCGTACAGCCGCCGCGCACTCACGAGT 16 174 1 GCCGCCGCGC 0.510498 -127 CTGCTACGCCCAACAGTGTCGG 16 289 0 GCTACGCCCA 0.625265 -12 CTAGCAGCCCGCGCGGGCCCCTAGCGGCCG 17 30 1 GCGCGGGCCC 0.914641 -253 CGGGCCCCTAGCGGCCGGTAAAGGGCCAGT 17 43 1 GCGGCCGGTA 0.690478 -240 CTGAGTAGCTGCCATGCGCTAGGCTTCGAG 17 105 1 GCCATGCGCT 0.669913 -178 GGGGCTTGACGCTGGCGCTCATGACCGACT 17 133 0 GCTGGCGCTC 0.563857 -150 CGGCCAGCAAGCCGGGGCTTGACGCTGGCG 17 146 0 GCCGGGGCTT 0.756628 -137 GCCCCGGCTTGCTGGCCGGCAACCCTCCAA 17 158 1 GCTGGCCGGC 0.81197 -125 CCCTCCAACCGCGGTGGGGTGCCCCGGGTG 17 180 1 GCGGTGGGGT 0.947234 -103 GCGGTGGGGTGCCCCGGGTGATGACCAGGT 17 190 1 GCCCCGGGTG 0.535289 -93 AGGTTGAGTAGCCATCGCCGGCTGCGCGGC 17 216 1 GCCATCGCCG 0.552569 -67 GCCATCGCCGGCTGCGCGGCAAGCGCGGGT 17 226 1 GCTGCGCGGC 0.770342 -57 GCTGCAACCTGCGGCGCGCGCGTCCGGACC 19 20 0 GCGGCGCGCG 0.950221 -45 CAGGCACCATGCCGCGCCAAGGCCGAGCAG 20 22 0 GCCGCGCCAA 0.883001 -264 GCGGCATGGTGCCTGCGGCTCGACTATGCA 20 37 1 GCCTGCGGCT 0.617127 -249 GCCGACGGTAGCGGTGGGGACCGCGGCGTC 20 85 1 GCGGTGGGGA 0.944364 -201 CGGCGCGGTAGCCCGGGCACCCCGTTCTCA 20 123 1 GCCCGGGCAC 0.845643 -163 ATCTTCCCGCGCTATGCCCCTGACCTGCAC 20 204 1 GCTATGCCCC 0.591416 -82 GCGAGCGACGCCACACCATGCACA 21 5 1 GCGACGCCAC 0.820387 -296 GTCTGGATCGGCCGGGGGAAATGCCGCCGC 21 135 1 GCCGGGGGAA 0.925253 -166 CGGGACCGAAGCGGCGGCATTTCCCCCGGC 21 145 0 GCGGCGGCAT 0.934873 -156 GACCAGTGACGCAGCCGCAAATATCGCGCC 21 187 1 GCAGCCGCAA 0.5845 -114 CGGGATCGGGGCGGGCGCGATATTTGCGGC 21 200 0 GCGGGCGCGA 0.923819 -101 GAATCTTTCCGCGGGCGGGTGAGTCACTGC 21 229 0 GCGGGCGGGT 0.93539 -72 TCGCGCGTCTGCAGCGGCACGAGGCCGATT 22 19 0 GCAGCGGCAC 0.875802 -50 GCGGCGGGGCCTGTATCGCG 23 1 1 GCGGCGGGGC 0.51241 -62 GGCCTGTATCGCGGTCCGCAGCCTATCCCG 23 18 1 GCGGTCCGCA 0.793274 -45 TGTCCGTCCAGCTCCGGGATAGGCTGCGGA 23 32 0 GCTCCGGGAT 0.644457 -31 ********** Masking position 2 Map Score: 95.2921 Number of sites scoring better than the average of aligned sites = 79420 Number in coding regions = 74257 Number in noncoding regions = 5163 Number of orfs with sites within 600 bp upstream = 1476 Fraction of orfs with sites within 600 bp upstream = 0.23707 Motif number 3 CAGGGACGGTCGCACCGACCGTGCCTGACCGAAGGTG 1 17 1 CGCGTGCCTG 0.951373 -284 GAGTCTGCGGCGTCGCATCATGGCGCCGCTCTACACC 1 50 0 CGCTGGCGCC 0.811622 -251 CGGGGAGGGCGCAACCAGCCCGGCGCGATCCGGGCTC 1 105 1 GCCCGGCGCG 0.980316 -196 AATCGGCTGCCCGGCCAAATGGGCATCCGGCGGCCGC 1 218 0 CCCGGGCATC 0.817385 -83 CAGCTCAGTCCGGTCTGTTCGGCGTACTCGGGGGCG 1 275 0 CCCCGGCGTA 0.850137 -26 ACCTGCTCATCCTGACATCTGTGCGACTTTCGCCGCG 3 38 0 CCCGTGCGAC 0.644531 -71 CCAATTCGTAGCACTCAATGGAACCCCTGCATAACCT 3 71 0 GCCGAACCCC 0.52519 -38 CCGTGTCTTTCGTGACGACCCAGCCACGCAGCGC 4 8 0 CGCCAGCCAC 0.560383 -293 TCTCCTTTGCCGAAGCTGTCCGGTCCGCGCAGGGTTC 4 47 1 CGCCGGTCCG 0.921851 -254 GGTCCGCGCAGGGTTCGTCGCTGCCGCGAGCCAGGCG 4 68 1 GGCCTGCCGC 0.700087 -233 CTGCCGCGAGCCAGGCGACTGGGCGCATACCTATTCG 4 88 1 CCCGGGCGCA 0.935297 -213 TGACCGCTTAGCCATCCATCCGGCTCCGACATGGTTG 4 133 0 GCCCGGCTCC 0.722498 -168 TGGGTTATCAGGTCACTCAGTTGCCCCCACCTCCTCA 4 186 1 GGCTTGCCCC 0.804737 -115 TTTCGCAACTCCGCTCACATCTGCCTGTGTACTTTTG 4 226 0 CCCCTGCCTG 0.974001 -75 GGGGTCAGCGCCAGGCGGTGGTGGCCATTCGCCATCG 5 11 1 CCCGTGGCCA 0.628503 -192 GTGGCCATTCGCCATCGCCGGTGACCGCTGACCCCCA 5 31 1 GCCGTGACCG 0.802212 -172 CCGCTGACCCCCATCCAGTGCCGCGTGTGACTTCCGG 5 55 1 CCCCCGCGTG 0.63358 -148 GCAGATACTCCTGGCCAACCGGGCGCACCGCACCTTG 5 176 1 CTCGGGCGCA 0.496562 -27 TTCAAGACTAGGTCCCGTACCGGCACCCTAACAGGGC 6 59 1 GGCCGGCACC 0.645441 -98 ACCCTAACAGGGCCCCCGGCCAACCTGTTGGTTGGGC 6 83 1 GGCCAACCTG 0.231606 -74 GGTTGGGCAAGGTATCGCTGCGGCGCGCATCGTCGCC 6 112 1 GGCCGGCGCG 0.919875 -45 GGCGGTCGAGCCTATCCGGGCGACGATG 6 139 0 GCCCTATCCG 0.266826 -18 CAGCATGTGACGAAGCGGCTGAGCCTCTGGCTCAGCC 7 67 0 CGCGAGCCTC 0.842599 -234 GTCGCTGATCGCAAACTTGCGTGCCTCGAGTCTACGT 7 205 0 GCCGTGCCTC 0.950198 -96 AAGACTTGGACCAGACTCGACGACCTCCACCGGGGCG 7 244 0 CCCCGACCTC 0.827916 -57 GGGATGCCGACGGAGCGCGTGTGCCTGGCCGGCAGGC 8 12 1 CGCGTGCCTG 0.952013 -45 CTAAATTGCGGCGCGCCTGCCTGCGCGA 9 2 0 GCCCTGCGCG 0.959327 -200 TGCCCACGACCTGTGCGGCACTGGCCGCCTGCCGTAA 9 54 0 CTCCTGGCCG 0.395244 -148 GTCGTGGGCACTGACCCATTGGGCCCCGTGGCTCATC 9 81 1 CTCGGGCCCC 0.714178 -121 GTGAACTAGGCGGGACTACAGTACCTGAGGACCGGAT 9 140 0 CGCGTACCTG 0.560421 -62 TCCGGGACTGCACTGCCCACCCGACCGTC 10 3 1 CGCCTGCCCA 0.938173 -29 AATCCGGCTTGCCGTCTATGCTGCCCGG 11 2 0 GCCCTGCCCG 0.986861 -211 GACCGTGTACGCCGACGCATGTGCCAAGTGGTCGACG 11 61 1 GCCGTGCCAA 0.482149 -152 CCGAACGCATTGCCTCAGCAGGGCCCGGAGGAAGCCT 11 125 1 TGCGGGCCCG 0.72702 -88 GGACAGCAGCCCACACATAGCGGTATCTGGAAGACAT 11 171 1 CCCCGGTATC 0.326206 -42 TCCGCCGCGAGCGGGTGCTGCCCCCAGCCGGC 12 9 0 CGGCTGCCCC 0.760197 -24 GTGACTCCAGCCTTTCTGAGCAGCCCGCGCGCCGA 14 9 0 CCCCAGCCCG 0.971267 -49 GTCCTCGACTCTAAACGGCCCGGTGACTCCAG 14 36 0 CGCCGGCCCG 0.993553 -22 GAGGATAAAGCGCAGCTGTATGGCCTGTTGCATGGGC 16 37 0 CGCTGGCCTG 0.836136 -264 AACAACAGCCCACGGCGAGGCGGCGCGGGAGGATAAA 16 65 0 CACCGGCGCG 0.715078 -236 CCACAGCAATCCTCGCGCTCTTGCCCGCAAACGGGTG 16 120 1 CCCTTGCCCG 0.916825 -181 GGCGGCTGTACGCCGCGGGCGAACACCGATTTCCACC 16 153 0 CGCGAACACC 0.0811559 -148 TCTTTCTGAACGACTCGTGAGTGCGCGGCGGCTGTAC 16 179 0 CGCGTGCGCG 0.949184 -122 CGTCAGCTGGGAGGCCAACTGGGCCTGGACCGACACT 16 260 1 GACGGGCCTG 0.538378 -41 GGGCCTGGACCGACACTGTTGGGCGTAGCAG 16 280 1 CGCGGGCGTA 0.750279 -21 TGGCCCTTTACCGGCCGCTAGGGGCCCGCGCGGGCTG 17 34 0 CCCGGGGCCC 0.519421 -249 CACAACTCCGGCGGTCTCAACTGGCCCTTTACCGGCC 17 55 0 GCCCTGGCCC 0.846552 -228 AGCGTCAAGCCCCGGCTTGCTGGCCGGCAACCCTCCA 17 150 1 CCCTGGCCGG 0.578393 -133 AACCCTCCAACCGCGGTGGGGTGCCCCGGGTGATGAC 17 178 1 CCGGTGCCCC 0.812194 -105 AGTAGCCATCGCCGGCTGCGCGGCAAGCGCGGGTCCG 17 222 1 GCCCGGCAAG 0.491181 -61 TGGTCAGGGGCCCGTCATGGCGGACCCGCGCTTGCCG 17 242 0 CCCCGGACCC 0.924042 -41 CCCAATTGCTGCAACCTGCGGCGCGCGCGTCCGGACC 19 20 0 GCCGCGCGCG 0.746507 -45 GACGTGCCAGCTTACCTGCCCAATTGCTGCAA 19 43 0 GCCCTGCCCA 0.942072 -22 TCGGATGCCTCCTGCTCGGCCTTGGCGCGGCAT 20 7 1 GCCCGGCCTT 0.605374 -279 CTCGGCCTTGGCGCGGCATGGTGCCTGCGGCTCGACT 20 25 1 GCGGTGCCTG 0.517728 -261 TGCCGCCGACGGTAGCGGTGGGGACCGCGGCGTCGAC 20 81 1 GGCGGGACCG 0.846864 -205 GGGTGCCCGGGCTACCGCGCCGGTCCGGTCGACGCCG 20 108 0 GCCCGGTCCG 0.88426 -178 CCCGGGCACCCCGTTCTCAGGGGCGTCCCAGATTCGG 20 134 1 CCCGGGCGTC 0.952305 -152 AAGATTGGGGGTTGACAGACGGGCCTAGAAGTGCATC 20 172 0 GTCGGGCCTA 0.421423 -114 CCGTTGTTCGGCGCCCGTTAGGGCCCCGTGTTAGCAT 20 233 1 GCCGGGCCCC 0.763756 -53 CCCGGCCGATCCAGACAAGACGGCACGCTCGTCCCAA 21 114 0 CCCCGGCACG 0.955372 -187 CGGGGGAAATGCCGCCGCTTCGGTCCCGTTTACGGGG 21 147 1 GCCCGGTCCC 0.578224 -154 TTTGCGGCTGCGTCACTGGTCAGACCCCGTAAACGGG 21 171 0 CGCCAGACCC 0.545938 -130 GCGCCCGCCCCGATCCCGCAGTGACTCACCCGCCCGC 21 212 1 CGCGTGACTC 0.530911 -89 TGTCACTCCACCGTGCCGCTCGGTCCAATAGAATCTT 21 252 0 CCCCGGTCCA 0.803722 -49 GCCCTCCCAATCGGCCTCGTGCCGCTGC 22 2 1 CCCCGGCCTC 0.980935 -67 ** * ******* Masking position 6 Map Score: 95.2717 Number of sites scoring better than the average of aligned sites = 40826 Number in coding regions = 37947 Number in noncoding regions = 2879 Number of orfs with sites within 600 bp upstream = 1251 Fraction of orfs with sites within 600 bp upstream = 0.200932 Motif number 4 GCGTCGCATCATGGCGCCGCTCTACACCTT 1 48 0 ATGGCGCCGC 0.632263 -253 CTGAGAGTCTGCGGCGTCGCATCATGGCGC 1 61 0 GCGGCGTCGC 0.674289 -240 ACGAGCCCGGATCGCGCCGGGCTGGTTGCG 1 114 0 ATCGCGCCGG 0.670706 -187 CGACATCGTTTCGGCCACGGCGAGGTCGCC 1 189 0 TCGGCCACGG 0.412935 -112 TGCCCATTTGGCCGGGCAGCCGATTGCTCC 1 230 1 GCCGGGCAGC 0.821612 -71 AACACCCTTGACCGCCCCCGAGTACGCCGA 1 263 1 ACCGCCCCCG 0.673465 -38 TCCGGTCTGTTCGGCGTACTCGGGGGCGGT 1 273 0 TCGGCGTACT 0.155347 -28 AGCTGTCCGGTCCGCGCAGGGTTCGTCGCT 4 60 1 TCCGCGCAGG 0.941858 -241 CGAATAGGTATGCGCCCAGTCGCCTGGCTC 4 95 0 TGCGCCCAGT 0.847549 -206 GGCAACCATGTCGGAGCCGGATGGATGGCT 4 131 1 TCGGAGCCGG 0.660181 -170 CGCTTCTGCATCGGGGCCGGAAGTCACACG 5 78 0 TCGGGGCCGG 0.912396 -125 CAAGGTGCGGTGCGCCCGGTTGGCCAGGAG 5 183 0 TGCGCCCGGT 0.637328 -20 TCTTCAAGACTAGGTCCCGTACCGGCACCC 6 57 1 TAGGTCCCGT 0.285753 -100 GGGCCCTGTTAGGGTGCCGGTACGGGACCT 6 68 0 AGGGTGCCGG 0.912086 -89 GCACCCTAACAGGGCCCCCGGCCAACCTGT 6 81 1 AGGGCCCCCG 0.623734 -76 CGGGCGACGATGCGCGCCGCAGCGATACCT 6 121 0 TGCGCGCCGC 0.968421 -36 TCGGACTACAACGGCGTAGGAAGTGTTGGG 7 106 1 ACGGCGTAGG 0.509611 -195 GATACCTTACTGGGTGCAGTCATGCCCAAC 7 130 0 TGGGTGCAGT 0.765608 -171 GACCTCCACCGGGGCGCCGTCGCTGATCGC 7 230 0 GGGGCGCCGT 0.518093 -71 TCAGGCGCCTGCCGGCCAGGCACACGCGCT 8 25 0 GCCGGCCAGG 0.761174 -32 CGCGCAGGCAGGCGCGCCGCAATTTAGTTC 9 12 1 GGCGCGCCGC 0.673343 -190 AATTACGGCAGGCGGCCAGTGCCGCACAGG 9 52 1 GGCGGCCAGT 0.647676 -150 ACTGACCCATTGGGCCCCGTGGCTCATCTC 9 90 1 TGGGCCCCGT 0.918017 -112 CAAGGCTTCCTCCGGGCCCTGCTGAGGCAA 11 134 0 TCCGGGCCCT 0.732484 -79 GCCGGCTGGGGGCAGCACCCGCTCGC 12 7 1 TGGGGGCAGC 0.883568 -26 GGCTGGAGTCACCGGGCCGTTTAGAGTCGA 14 34 1 ACCGGGCCGT 0.574272 -24 GCCTGTTGCATGGGCCCACTATAGGCCATG 16 22 0 TGGGCCCACT 0.5616 -279 GCTTTATCCTCCCGCGCCGCCTCGCCGTGG 16 63 1 CCCGCGCCGC 0.508073 -238 GACTCGTGAGTGCGCGGCGGCTGTACGCCG 16 175 0 TGCGCGGCGG 0.699955 -126 CCCAACAGTGTCGGTCCAGGCCCAGTTGGC 16 273 0 TCGGTCCAGG 0.772002 -28 CCGACACTGTTGGGCGTAGCAG 16 289 1 TGGGCGTAGC 0.552093 -12 ACCGGCCGCTAGGGGCCCGCGCGGGCTGCT 17 32 0 AGGGGCCCGC 0.578553 -251 GCGGGCCCCTAGCGGCCGGTAAAGGGCCAG 17 42 1 AGCGGCCGGT 0.335121 -241 TTGGAGGGTTGCCGGCCAGCAAGCCGGGGC 17 158 0 GCCGGCCAGC 0.745607 -125 CAACCGCGGTGGGGTGCCCCGGGTGATGAC 17 185 1 GGGGTGCCCC 0.646788 -98 ACCCGCGCTTGCCGCGCAGCCGGCGATGGC 17 226 0 GCCGCGCAGC 0.891309 -57 CCGTCTGGTCAGGGGCCCGTCATGGCGGAC 17 254 0 AGGGGCCCGT 0.562979 -29 GGTCCGGACGCGCGCGCCGCAGGTTGCAGC 19 20 1 CGCGCGCCGC 0.607805 -45 CAGTAGTAGTTAGGTGCCGCCGACGGTAGC 20 67 1 TAGGTGCCGC 0.491912 -219 AGCGGTGGGGACCGCGGCGTCGACCGGACC 20 94 1 ACCGCGGCGT 0.541783 -192 TGCCCGGGCTACCGCGCCGGTCCGGTCGAC 20 112 0 ACCGCGCCGG 0.704153 -174 CCCTGAGAACGGGGTGCCCGGGCTACCGCG 20 126 0 GGGGTGCCCG 0.679388 -160 GCGCCGAACAACGGTGCAGGTCAGGGGCAT 20 217 0 ACGGTGCAGG 0.798761 -69 GCACCGTTGTTCGGCGCCCGTTAGGGCCCC 20 230 1 TCGGCGCCCG 0.85024 -56 GGCGCCCGTTAGGGCCCCGTGTTAGCATGG 20 242 1 AGGGCCCCGT 0.556359 -44 TTTTGGGACGAGCGTGCCGTCTTGTCTGGA 21 112 1 AGCGTGCCGT 0.855501 -189 TGCCGCCGCTTCGGTCCCGTTTACGGGGTC 21 156 1 TCGGTCCCGT 0.875641 -145 CACTGCGGGATCGGGGCGGGCGCGATATTT 21 205 0 TCGGGGCGGG 0.710445 -96 CTGTCACTCCACCGTGCCGCTCGGTCCAAT 21 260 0 ACCGTGCCGC 0.893227 -41 GCCCTCCCAATCGGCCTCGTGCCGCTGCAG 22 11 1 TCGGCCTCGT 0.650033 -58 GATCGCGTTGTCCGTCCAGCTCCGGGATAG 23 40 0 TCCGTCCAGC 0.724017 -23 ********** Masking position 4 Map Score: 70.8051 Number of sites scoring better than the average of aligned sites = 45021 Number in coding regions = 41871 Number in noncoding regions = 3150 Number of orfs with sites within 600 bp upstream = 1298 Fraction of orfs with sites within 600 bp upstream = 0.208481 Motif number 5 TGAAACCTGAGAGTCTGCGGCGTCGCATCATG 1 65 0 GAGTCTCGCG 0.494649 -236 CCGCACGATCGAACTGTTGGCGACCTCGCCGT 1 171 1 GAACTGTGCG 0.223243 -130 CCGGCCAAATGGGCATCCGGCGGCCGCGACAT 1 213 0 GGGCATCGCG 0.63222 -88 GGTGTTCCCGGAGCAATCGGCTGCCCGGCCAA 1 237 0 GAGCAACGCT 0.449389 -64 TAGGTTAGGACAGCCTTTCTCGCGGCGAAAGT 3 18 1 CAGCCTTCCG 0.947957 -91 CTTTCGTGACGACCCAGCCACGCAGCGC 4 7 0 GACCCACCCG 0.832883 -294 CTTAGCCATCCATCCGGCTCCGACATGGTTGC 4 132 0 CATCCGCTCG 0.390289 -169 CGCTGACCCCCATCCAGTGCCGCGTGTGACTT 5 56 1 CATCCATGCG 0.490281 -147 CCGCGTGTGACTTCCGGCCCCGATGCAGAAGC 5 75 1 CTTCCGCCCG 0.566203 -128 CTATGAACAACAACCTGCCGCTGGCAAATCCG 5 115 1 CAACCTCCCT 0.51453 -88 GGCGGTCGAGCCTATCCGGGCGACGATGC 6 138 0 GAGCCTTCGG 0.370265 -19 GCCTCTGGCTCAGCCAACCCCGCGAACTTAGC 7 50 0 CAGCCACCCG 0.982787 -251 CGAAGCGGCTGAGCCTCTGGCTCAGCCAACCC 7 62 0 GAGCCTTGCT 0.379845 -239 TAGTCCGATACAGCATGTGACGAAGCGGCTGA 7 82 0 CAGCATTGCG 0.831939 -219 GACGCCAGCGCAGCTAATCGCGCAACAAGACT 7 275 0 CAGCTATCCG 0.700274 -26 TGTGCCTGGCCGGCAGGCGCCTGAGACGATGA 8 31 1 CGGCAGCGCT 0.433069 -26 TTACGGCAGGCGGCCAGTGCCGCACAGGTCGT 9 54 1 CGGCCATGCG 0.591934 -148 CGCATTGCCTCAGCAGGGCCCGGAGGAAGCCT 11 130 1 CAGCAGGCCG 0.757816 -83 GCGAGGTGGACAGCAGCCCACACATAGCGGTA 11 164 1 CAGCAGCCCA 0.639357 -49 CTGGGGGCAGCACCCGCTCGCGGCGGA 12 16 1 CACCCGTCCG 0.871301 -17 CAGCCTTTCTGAGCAGCCCGCGCGCCGA 14 7 0 GAGCAGCCCG 0.971992 -51 TCAACAACAACAACAGCCCACGGCGAGGCGGC 16 78 0 CAACAGCCCG 0.902586 -223 CTGGCGTCCACAGCAATCCTCGCGCTCTTGCC 16 113 1 CAGCAACCCG 0.960431 -188 CCCACGGATGCAGCCATCGACTTCGACGTCAG 16 234 1 CAGCCACGCT 0.792096 -67 GTTGGCCTCCCAGCTGACGTCGAAGTCGATGG 16 247 0 CAGCTGCGCG 0.946147 -54 ATCAGATTACTAGCAGCCCGCGCGGGCCCCTA 17 21 1 TAGCAGCCCG 0.695664 -262 GGTTGCCGGCCAGCAAGCCGGGGCTTGACGCT 17 150 0 CAGCAACCGG 0.608571 -133 GCTTGCCGCGCAGCCGGCGATGGCTACTCAAC 17 218 0 CAGCCGCGTG 0.708695 -65 TGGCGGACCCGCGCTTGCCGCGCAGCCGGCGA 17 230 0 GCGCTTCCCG 0.28577 -53 GAGCTTTCCCCGTCTGGTCAGG 17 271 0 GAGCTTCCCG 0.865811 -12 CCAATTGCTGCAACCTGCGGCGCGCGCGTCCG 19 24 0 CAACCTCGCG 0.866584 -41 GAGCCGCAGGCACCATGCCGCGCCAAGGCCGA 20 26 0 CACCATCCCG 0.847539 -260 TAGTAGTTAGGTGCCGCCGACGGTAGCGGTGG 20 70 1 GTGCCGCGCG 0.793884 -216 CGCAGTGACTCACCCGCCCGCGGAAAGATTCT 21 228 1 CACCCGCCCG 0.965589 -73 GCCCTCCCAATCGGCCTCGTGCCGCTGCA 22 8 1 CAATCGCCCG 0.467212 -61 GCAGACGCGCGATCAGACCTCGACCGGCAGTA 22 37 1 GATCAGCCCG 0.791224 -32 TCGCGGTCCGCAGCCTATCCCGGAGCTGGACG 23 26 1 CAGCCTTCCG 0.94794 -37 ****** ** ** Masking position 4 Map Score: 38.3022 Number of sites scoring better than the average of aligned sites = 23860 Number in coding regions = 22341 Number in noncoding regions = 1519 Number of orfs with sites within 600 bp upstream = 920 Fraction of orfs with sites within 600 bp upstream = 0.147767 Motif number 6 CGGTCGCACCGACCGTGCCTGACCGAAGGTG 1 23 1 GACCTGCCTG 0.699639 -278 ACCGGAGTTGGCCCTTGTCTGAACCGCACGA 1 148 1 GCCCTGTCTG 0.794676 -153 CTCCGGGAACACCCTTGACCGCCCCCGAGTA 1 256 1 ACCCTGACCG 0.89349 -45 TCACGATTTGGCACCTGACAGCAAATTCCA 2 11 1 GCACTGACAG 0.72128 -20 ATTCGCCATCGCCGGTGACCGCTGACCCCCA 5 37 1 GCCGTGACCG 0.918782 -166 CCCTAACAGGGCCCCCGGCCAACCTGTTGGT 6 84 1 GCCCCGGCCA 0.920266 -73 CAGACTCGACGACCTCCACCGGGGCGCCGTC 7 239 0 GACCCCACCG 0.797341 -62 AAATTGCGGCGCGCCTGCCTGCGCGA 9 6 0 GCGCTGCCTG 0.737502 -196 ATGGGTCAGTGCCCACGACCTGTGCGGCACT 9 69 0 GCCCCGACCT 0.970604 -133 ACTGCACTGCCCACCCGACCGTCCG 10 17 1 CCACCGACCG 0.819939 -15 GCTGGGGGCAGCACCCGCTCGCGGCGGA 12 15 1 GCACCGCTCG 0.679609 -18 TCCCGCTGGCCCATGGCCTATAGTGGGCC 16 9 1 GCCCTGGCCT 0.876483 -292 CAATCCTCGCGCTCTTGCCCGCAAACGGGTG 16 126 1 GCTCTGCCCG 0.944998 -175 CAACAGCCATGACCGTGCCCACGGATGCAGC 16 217 1 GACCTGCCCA 0.782376 -84 GTCTCAACTGGCCCTTTACCGGCCGCTAGGG 17 48 0 GCCCTTACCG 0.89349 -235 TGACGCTGGCGCTCATGACCGACTCGAAGCC 17 126 0 GCTCTGACCG 0.957704 -157 ATCACCCGGGGCACCCCACCGCGGTTGGAGG 17 181 0 GCACCCACCG 0.893394 -102 GCCATGACGGGCCCCTGACCAGACGGGGAAA 17 258 1 GCCCTGACCA 0.971766 -25 AACCTGCGGCGCGCGCGTCCGGACCAGGAGT 19 14 0 GCGCCGTCCG 0.883625 -51 CCCGCGCTATGCCCCTGACCTGCACCGTTGT 20 209 1 GCCCTGACCT 0.963547 -77 TGCGCAATTGGCACACGACCACCTGACTTAT 21 64 0 GCACCGACCA 0.926503 -237 CCGCAGTGACTCACCCGCCCGCGGAAAGATT 21 227 1 TCACCGCCCG 0.699818 -74 CGCGCGATCAGACCTCGACCGGCAGTAGGCT 22 42 1 GACCCGACCG 0.97317 -27 **** ****** Masking position 9 Map Score: 31.3932 Number of sites scoring better than the average of aligned sites = 6579 Number in coding regions = 6092 Number in noncoding regions = 487 Number of orfs with sites within 600 bp upstream = 419 Fraction of orfs with sites within 600 bp upstream = 0.0672984 Motif number 7 GAGACAGGGACGGTCGCACCGACCGTGCCT 1 13 1 CGGTCGCACC 0.669506 -288 TCGAAACCGGAGTTGGCCCTTGTCTGAACC 1 143 1 AGTTGGCCCT 0.927559 -158 GGAAGGTCACCCCAATTCGTAGC 3 96 0 AGGTCACCCC 0.779242 -13 CAGGTCACTCAGTTGCCCCCACCTCCTCAT 4 194 1 AGTTGCCCCC 0.823749 -107 CAGCTCACCCTCTCGCTCGGT 4 290 0 AGCTCACCCT 0.870758 -11 CACCGCCTGGCGCTGACCCC 5 1 0 CGCTGACCCC 0.978251 -202 CGCCGGTGACCGCTGACCCCCATCCAGTGC 5 46 1 CGCTGACCCC 0.978251 -157 ACAGGTTGGCCGGGGGCCCTGTTAGGGTGC 6 81 0 CGGGGGCCCT 0.758414 -76 AGTCCCGCCTAGTTCACCCTAGTTCAGCTG 9 160 1 AGTTCACCCT 0.642779 -42 ACCCTAGTTCAGCTGAACCTCAGTGGAAGG 9 175 1 AGCTGAACCT 0.40555 -27 CGCGAGCGGGTGCTGCCCCCAGCCGGC 12 8 0 TGCTGCCCCC 0.689946 -25 TCCCGCTGGCCCATGGCCTATAG 16 4 1 CGCTGGCCCA 0.917819 -297 GTCCAGGCCCAGTTGGCCTCCCAGCTGACG 16 260 0 AGTTGGCCTC 0.521289 -41 TAGCAGCCCGCGCGGGCCCCTAGCGGCCGG 17 31 1 CGCGGGCCCC 0.966856 -252 CGGCGGTCTCAACTGGCCCTTTACCGGCCG 17 54 0 AACTGGCCCT 0.670887 -229 TTGTGCTTTGAGTTGGCACTGAGTAGCTGC 17 87 1 AGTTGGCACT 0.619065 -196 CGGGGCTTGACGCTGGCGCTCATGACCGAC 17 134 0 CGCTGGCGCT 0.838432 -149 TGGGCAGGTAAGCTGGCACGTC 19 53 1 AGCTGGCACG 0.587307 -12 CAAGACGGCACGCTCGTCCCAAAAAAGCGT 21 106 0 CGCTCGTCCC 0.731891 -195 GCAAATATCGCGCCCGCCCCGATCCCGCAG 21 203 1 CGCCCGCCCC 0.874001 -98 ********** Masking position 2 Map Score: 16.6866 Number of sites scoring better than the average of aligned sites = 6687 Number in coding regions = 6260 Number in noncoding regions = 427 Number of orfs with sites within 600 bp upstream = 355 Fraction of orfs with sites within 600 bp upstream = 0.057019 Motif number 8 CGCACCGACCGTGCCTGACCGAAGGTGTAG 1 27 1 GTGCCTGACC 0.626178 -274 TTGCTGTCAGGTGCCAAATCGTGA 2 5 0 GTGCCAAATC 0.665493 -26 CCCCCATCCAGTGCCGCGTGTGACTTCCGG 5 62 1 GTGCCGCGTG 0.931027 -141 GCAGGTTGTTGTTCATAGTGATCGTCGCTT 5 103 0 GTTCATAGTG 0.559299 -100 TCGCTGCGGCGCGCATCGTCGCCCGGATAG 6 126 1 GCGCATCGTC 0.748466 -31 GCAAACTTGCGTGCCTCGAGTCTACGTGCC 7 202 0 GTGCCTCGAG 0.889106 -99 CGGAGCGCGTGTGCCTGGCCGGCAGGCGCC 8 22 1 GTGCCTGGCC 0.90235 -35 GCGTTCATCGTCTCAGGCGCCT 8 45 0 GTTCATCGTC 0.698788 -12 ATGCAACTAGGTGCATATTGACCGTGTACG 11 42 1 GTGCATATTG 0.724599 -171 GCCGACGCATGTGCCAAGTGGTCGACGTGT 11 71 1 GTGCCAAGTG 0.916483 -142 CGACGTGTATGTGCAACGTCTAGTATCAGT 11 93 1 GTGCAACGTC 0.925679 -120 CCCACTATTGTGCATCAAGATGCGAATTA 15 10 1 GTGCATCAAG 0.474382 -81 CAGCTACTCAGTGCCAACTCAAAGCACAAC 17 86 0 GTGCCAACTC 0.538529 -197 AACTACTACTGTGCATAGTCGAGCCGCAGG 20 48 0 GTGCATAGTC 0.935535 -238 GGGCCTAGAAGTGCATCGCCGAATCTGGGA 20 159 0 GTGCATCGCC 0.936437 -127 TAACACCGATGTGCATGGTGTGGCGTCGCT 21 14 0 GTGCATGGTG 0.911761 -287 AGGTGGTCGTGTGCCAATTGCGCAACAGTA 21 71 1 GTGCCAATTG 0.665493 -230 TCACTCCACCGTGCCGCTCGGTCCAATAGA 21 257 0 GTGCCGCTCG 0.5761 -44 ********** Masking position 4 Map Score: 11.0415 Number of sites scoring better than the average of aligned sites = 2219 Number in coding regions = 2024 Number in noncoding regions = 195 Number of orfs with sites within 600 bp upstream = 189 Fraction of orfs with sites within 600 bp upstream = 0.0303566 Motif number 9 GGGCGGTCAAGGGTGTTCCCGGAGCAATCGG 1 249 0 GGGTGTCCCG 0.938357 -52 ACAGATGTCAGGATGAGCAGGTTATGCAGGG 3 53 1 GGATGGCAGG 0.945083 -56 CTGCGTGGCTGGGTCGTCACGAAAGACACGG 4 14 1 GGGTCTCACG 0.637651 -287 CGGATGGCTTGGGTTATCAGGTCACTCAGTT 4 177 1 GGGTTTCAGG 0.927972 -124 GATGCTTGTTGGGTTTACCGGATTTGCCAGC 5 134 0 GGGTTACCGG 0.981968 -69 CAAGGTGCGGTGCGCCCGGTTGGCCAGG 5 185 0 CGGTGGCCCG 0.807855 -18 CCCAACCAACAGGTTGGCCGGGGGCCCTGTT 6 88 0 AGGTTGCCGG 0.864115 -69 TGACAACTCTGGGTGAGCCGGATACCTTACT 7 149 0 GGGTGGCCGG 0.994146 -152 CCTGAGGACCGGATTCACCGGAACGCCCGGC 9 123 0 GGATTACCGG 0.935646 -79 CGGACGGTCGGGTGGGCAGTGCAGTCCCGG 10 12 0 GGGTGGCAGT 0.773094 -20 CAGAAAGGCTGGAGTCACCGGGCCGTTTAGA 14 28 1 GGAGTACCGG 0.772377 -30 GTGGAAATCGGTGTTCGCCCGCGGCGTACAG 16 154 1 GTGTTGCCCG 0.654615 -147 AACCGCGGTGGGGTGCCCCGGGTGATGACCA 17 186 1 GGGTGCCCGG 0.981035 -97 CCTGAGAACGGGGTGCCCGGGCTACCGCGCC 20 124 0 GGGTGCCGGG 0.857978 -162 GGAAGATTGGGGGTTGACAGACGGGCCTAGA 20 180 0 GGGTTACAGA 0.522095 -106 CGTCTTGTCTGGATCGGCCGGGGGAAATGCC 21 129 1 GGATCGCCGG 0.932483 -172 GCGGCACGGTGGAGTGACAGGAGGTCGCTAC 21 270 1 GGAGTACAGG 0.562906 -31 ***** ***** Masking position 8 Map Score: 16.177 Number of sites scoring better than the average of aligned sites = 5268 Number in coding regions = 4881 Number in noncoding regions = 387 Number of orfs with sites within 600 bp upstream = 330 Fraction of orfs with sites within 600 bp upstream = 0.0530035 Motif number 10 ATCGAACTGTTGGCGACCTCGCCGTGGCCG 1 178 1 TGGCGACCTC 0.972064 -123 AATGGGCATCCGGCGGCCGCGACATCGTTT 1 208 0 CGGCGGCCGC 0.95915 -93 CCGGTCTGTTCGGCGTACTCGGGGGCGGTC 1 272 0 CGGCGTACTC 0.951644 -29 CTCGCGGCAGCGACGAACCCTGCGCGGACC 4 68 0 CGACGAACCC 0.66179 -233 CGATGGCGAATGGCCACCACCGCCTGGCGC 5 18 0 TGGCCACCAC 0.868539 -185 TCGCCATCGCCGGTGACCGCTGACCCCCAT 5 39 1 CGGTGACCGC 0.770634 -164 GATGCAGAAGCGACGATCACTATGAACAAC 5 96 1 CGACGATCAC 0.784637 -107 GGACCAGACTCGACGACCTCCACCGGGGCG 7 244 0 CGACGACCTC 0.952178 -57 GCACATGCGTCGGCGTACACGGTCAATATG 11 55 0 CGGCGTACAC 0.96285 -158 TGCACATACACGTCGACCACTTGGCACATG 11 78 0 CGTCGACCAC 0.948186 -135 TGTGGGCTGCTGTCCACCTCGCCAAGGCTT 11 156 0 TGTCCACCTC 0.368156 -57 TGTTGATTCCTGGCGTCCACAGCAATCCTC 16 104 1 TGGCGTCCAC 0.959352 -197 TGTACGCCGCGGGCGAACACCGATTTCCAC 16 154 0 GGGCGAACAC 0.842558 -147 TGTTCGCCCGCGGCGTACAGCCGCCGCGCA 16 165 1 CGGCGTACAG 0.655768 -136 AGCACAACTCCGGCGGTCTCAACTGGCCCT 17 64 0 CGGCGGTCTC 0.852094 -219 GTGGGGACCGCGGCGTCGACCGGACCGGCG 20 98 1 CGGCGTCGAC 0.856418 -188 CGTACTACAGTAGCGACCTCCTGTCACTCC 21 280 0 TAGCGACCTC 0.633114 -21 ********** Masking position 4 Map Score: 15.257 Number of sites scoring better than the average of aligned sites = 11220 Number in coding regions = 10646 Number in noncoding regions = 574 Number of orfs with sites within 600 bp upstream = 413 Fraction of orfs with sites within 600 bp upstream = 0.0663347 Motif number 11 ********** No masking Map Score: 1.13427e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ********** No masking Map Score: 1.13427e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: 1.13427e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0