AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00300_mtub_reg_100.orf -o00300_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 Rv0072 300 hypothetical protein Rv0072 #2 Rv0074 79 hypothetical protein Rv0074 #3 dapE 90 dapE #4 argS 300 argS #5 lysX 237 lysX #6 dapE2 300 dapE2 #7 murE 22 murE #8 hypothetical 267 hypothetical protein Rv2160c #9 Rv2294 294 hypothetical protein Rv2294 #10 dapF 24 dapF #11 Rv2728c 108 hypothetical protein Rv2728c #12 dapA 68 dapA #13 Rv2754c 243 hypothetical protein Rv2754c #14 Rv2774c 152 hypothetical protein Rv2774c #15 Rv3329 59 hypothetical protein Rv3329 #16 Rv3603c 184 hypothetical protein Rv3603c #17 ask 256 ask Motif number 1 GATATCGGTTGAGCCGCCGGTTGCCCACTG 1 46 0 GAGCCGCCGG 0.921769 -255 GGAATGGATCCCGCCACCCCACCTCGACCG 1 159 1 CCGCCACCCC 0.963442 -142 GTTGGTGTGGGCACCGCGGTCGAGGTGGGG 1 175 0 GCACCGCGGT 0.758291 -126 CCAACGACTACCACCACCCCGAACGCCTCT 1 200 1 CCACCACCCC 0.64624 -101 TGTGGTCAGGGCGCGGCCCGCTAGTGGTCG 1 231 0 GCGCGGCCCG 0.64575 -70 ACGTCAAGACCAGGCCCCACAAGTGCGCCA 1 263 1 CAGGCCCCAC 0.511377 -38 GAACTAGCCACTGCCGGGGCAGCGGTGGCG 2 24 1 CTGCCGGGGC 0.906069 -56 GCGGTGTGAACCGCCACCGCTGCCCCGGCA 2 35 0 CCGCCACCGC 0.9597 -45 ACCTCCAAACGCGCACGCGGTGTGAACCGC 2 51 0 GCGCACGCGG 0.781791 -29 GCTACTTGTGCCGCCGAACAGACACAA 3 8 1 GTGCCGCCGA 0.674839 -83 TCGGCGCCACCCGCGAGGGCGGCCGCATAG 4 54 0 CCGCGAGGGC 0.972521 -247 ATCAACCCTTGTGCCCCCGGCAGGATTCGA 4 114 1 GTGCCCCCGG 0.763714 -187 GTGTCGTCGTGCGCCCCCGTAGCTCAGGGG 4 180 0 GCGCCCCCGT 0.969677 -121 ACGACACGTTGCGCCATGGGGCCCCGCCAG 4 203 1 GCGCCATGGG 0.902344 -98 ATGCGCTACTCTGGCGGGGCCCCATGGCGC 4 213 0 CTGGCGGGGC 0.632587 -88 CAGTGGGTAGCCGCGATGCGCTACTCTGGC 4 228 0 CCGCGATGCG 0.508868 -73 CCACTGACCACCGCAACGGATTCGAAGCCC 4 252 1 CCGCAACGGA 0.879466 -49 GCTGTTCCAGGCGCGACCAGCTTGTTGGAC 5 30 1 GCGCGACCAG 0.743368 -208 CCACCTGATTCCGGCCGGGTCCAACAAGCT 5 48 0 CCGGCCGGGT 0.929127 -190 GCGGCTTTGGCCGCGATCGGTCGGCATTGG 5 125 0 CCGCGATCGG 0.70139 -113 GCGGCCAAAGCCGCCCACGCTGCACGCAGA 5 141 1 CCGCCCACGC 0.909557 -97 ATGCCTGTGACCGGACCGCTGAACCTTGAG 5 184 1 CCGGACCGCT 0.522494 -54 CCTTAGCTGCCAGCCCCGGTGGTTGGTTGG 6 46 0 CAGCCCCGGT 0.972048 -255 TCGGATTGCCCCGCACCGGCCCAACCTAGC 6 79 1 CCGCACCGGC 0.988241 -222 CGGCGACGATGCGCCCCGGGTAACGGGGTG 6 110 1 GCGCCCCGGG 0.987213 -191 GGGTGAGGAGGAGCCGGGCAATCAAATCGA 6 135 1 GAGCCGGGCA 0.528463 -166 CGGCGACGATGCGCCCCGGGTAACGGGGTG 6 168 1 GCGCCCCGGG 0.987213 -133 GGGTGAGGAGGAGCCAGGCAATCAGCCCAC 6 193 1 GAGCCAGGCA 0.530157 -108 GCCAGGCAATCAGCCCACGTAAGCAAATCC 6 205 1 CAGCCCACGT 0.61795 -96 CCCTGGCGCGCCGGGCCCGCGTCGTCGCCG 6 239 0 CCGGGCCCGC 0.501625 -62 CGGGCCCGGCGCGCCAGGGGCGATCGGCTC 6 250 1 GCGCCAGGGG 0.987096 -51 CCTACCGACAGGGCGCGCACAC 7 5 0 CAGGGCGCGC 0.573464 -18 CGCAGGATCTGCGCCCGGGTTTGGCGGCCG 8 20 0 GCGCCCGGGT 0.984904 -248 CGCAGATCCTGCGCGCCGCGATGGATATCG 8 37 1 GCGCGCCGCG 0.970606 -231 CGCCGATGGACAGCCCCGAGAGCCCCTTCA 8 73 0 CAGCCCCGAG 0.912885 -195 TCATGCCCAGCCGCCCGGCAAGCTCGCCGA 8 97 0 CCGCCCGGCA 0.934401 -171 AATGCCGGAACAGGCCCGACTTGCTCATGC 8 121 0 CAGGCCCGAC 0.640964 -147 CGGCATTTCGGCGCCAAGGAGCAGCTGCAG 8 144 1 GCGCCAAGGA 0.72059 -124 GGCGACCGTCGAGGCCGCCGTGAGCGTGTT 8 176 1 GAGGCCGCCG 0.546969 -92 GCCATCGCGGGAGCCACGACCTCGGCTTCG 8 206 0 GAGCCACGAC 0.780321 -62 GTCGTGGCTCCCGCGATGGCAGCGCCGCCC 8 216 1 CCGCGATGGC 0.809958 -52 GATGGCAGCGCCGCCCGGGGTGGACCGGGT 8 230 1 CCGCCCGGGG 0.942333 -38 GCATGAGGGCGCGCACCCGGTCCACCCCGG 8 244 0 GCGCACCCGG 0.932739 -24 AGCCCCAAATCGGCCACGGCTAAATGACAG 9 59 0 CGGCCACGGC 0.823727 -236 GCGGCTCGTTCCGCCGCGATGAAATAACGC 9 162 0 CCGCCGCGAT 0.845596 -133 GCGGCGGAACGAGCCGCCCTATGACCAACT 9 175 1 GAGCCGCCCT 0.626201 -120 GGAACATAGCCCGACCGGGGCTATCGACCA 9 218 0 CCGACCGGGG 0.757451 -77 ACTGGTCTAGCCACACCGGGGAACATAGCC 9 237 0 CCACACCGGG 0.846693 -58 TATCCGCGTCCCGCACCGGTCAACTGGTCT 9 259 0 CCGCACCGGT 0.963534 -36 TCTGGCCAATGAGCGCGGGACAGTGTCGGC 11 16 1 GAGCGCGGGA 0.805579 -93 CGGCCTCGTGGAGCAACGGCTGCAAAGAGA 11 58 0 GAGCAACGGC 0.870455 -51 CCGAATCCGCCCGCCAAGGCGTTAGCTTTG 11 85 1 CCGCCAAGGC 0.934782 -24 TTTATCCCGGCCGCGAGCGCGCGTGTTTGT 12 27 0 CCGCGAGCGC 0.715505 -42 TCAACTCTGGGAGCCAGCGCCAACGCGGAC 13 48 1 GAGCCAGCGC 0.922735 -196 GCCGCAGGGTCCACGCCCGTCGAGCGTCCG 13 73 0 CCACGCCCGT 0.676129 -171 GGTCCGCGGTCAGCAGGGGGATGTCGAGGT 13 148 0 CAGCAGGGGG 0.813984 -96 CCTGCTGACCGCGGACCCGCGTCTGCGCCG 13 161 1 GCGGACCCGC 0.817814 -83 GGACCCGCGTCTGCGCCGGGAGCCCGGGCT 13 173 1 CTGCGCCGGG 0.944644 -71 TGTGGCAGGTCAGCCCGGGCTCCCGGCGCA 13 184 0 CAGCCCGGGC 0.984161 -60 GCTCACCTTAGCGCCGGCCGCAACTAGACG 13 221 0 GCGCCGGCCG 0.585331 -23 CGCCGCGACTGCGCCCACGACCTATCTAGG 14 112 0 GCGCCCACGA 0.793376 -41 TACGCGCTGACCGCCGCGACTGCGCCCACG 14 123 0 CCGCCGCGAC 0.943874 -30 GTGTTGGCGAGCGCAGCGCTAGGCTCGGGC 15 21 0 GCGCAGCGCT 0.683783 -39 GGCGCCGCTTGTGCCAGGGTGTACCCGCCC 16 12 1 GTGCCAGGGT 0.743386 -173 CGCCCGATTGCCGCCGGCAACCGACACTGT 16 37 1 CCGCCGGCAA 0.543947 -148 CAAATCAGCAGTGCCCCGGGTGGGTCTTGA 16 79 1 GTGCCCCGGG 0.974778 -106 TGACCGTCCGGTACCCGGGCATGGGACTGG 16 133 1 GTACCCGGGC 0.614573 -52 CGCGAACGTCCCGCGACGGGAAGCCGGTCT 17 56 1 CCGCGACGGG 0.984306 -201 GGGGTCTGATCCAGACCGGCTTCCCGTCGC 17 68 0 CCAGACCGGC 0.484765 -189 TCCTCGGACGCCGCGACGGGGTCTGATCCA 17 85 0 CCGCGACGGG 0.984306 -172 GTCCGAGGAGGAGCACCCGCTGCACATGAA 17 106 1 GAGCACCCGC 0.909119 -151 GACTCTGCGTCCACCACGGGAATGTGCGAG 17 175 0 CCACCACGGG 0.921938 -82 AGAATAGGGGGCGCGCCGGCCTGCGCTGAC 17 202 0 GCGCGCCGGC 0.972238 -55 ********** Masking position 3 Map Score: 110.525 Number of sites scoring better than the average of aligned sites = 85039 Number in coding regions = 79319 Number in noncoding regions = 5720 Number of orfs with sites within 600 bp upstream = 1616 Fraction of orfs with sites within 600 bp upstream = 0.259557 Motif number 2 GACTTCGCACCGGTCACCGGGTG 1 3 0 CGGTCACCGG 0.93225 -298 GCTTGTGGTTGGGTGTGCAGGTGAAGGTGAG 1 82 0 GGGTGTGCGG 0.773652 -219 GACAAGGAAACGGTCCGACGGCCAAACGGAA 1 132 1 CGGTCCGAGG 0.785981 -169 TGGGCACCGCGGTCGAGGTGGGGTGGCGGGA 1 167 0 GGTCGAGGGG 0.879371 -134 GTCGAAGAGGCGTTCGGGGTGGTGGTAGTCG 1 204 0 CGTTCGGGTG 0.496708 -97 GCCCGCTAGTGGTCGAAGAGGCGTTCGGGGT 1 215 0 GGTCGAAGGG 0.646481 -86 TCCCAGAGGCTACCAACGTGGCGCACTT 1 283 0 GGCTACCACG 0.641994 -18 GGCTAGTTCCGGCCAAGCCGGG 2 2 0 GGCCAAGCGG 0.884876 -78 GAACCGCCACCGCTGCCCCGGCAGTGGCTAG 2 27 0 CGCTGCCCGG 0.982425 -53 CAGCGGTGGCGGTTCACACCGCGTGCGCGTT 2 43 1 GGTTCACACG 0.464799 -37 CCAACTATGCGGCCGCCCTCGCGGGTGGCGC 4 50 1 GGCCGCCCCG 0.986825 -251 CCGCCCTCGCGGGTGGCGCCGATCACATTGT 4 62 1 GGGTGGCGCG 0.894587 -239 TGTCGTCGTGCGCCCCCGTAGCTCAGGGGAT 4 178 0 CGCCCCCGAG 0.713065 -123 TACTCTGGCGGGGCCCCATGGCGCAACGTGT 4 206 0 GGGCCCCAGG 0.902646 -95 GGTGGTCAGTGGGTAGCCGCGATGCGCTACT 4 233 0 GGGTAGCCCG 0.783748 -68 GCTTCGAATCCGTTGCGGTGGTCAGTGGGTA 4 249 0 CGTTGCGGGG 0.89385 -52 CCATCCTATGGGCTGAGGTGGTTGGGCTTCG 4 274 0 GGCTGAGGGG 0.928259 -27 GGGGCCTCCCTCGTTGGCTGCTG 5 3 1 GGCCTCCCCG 0.761661 -235 CCAACAAGCTGGTCGCGCCTGGAACAGCAGC 5 27 0 GGTCGCGCTG 0.85062 -211 GTCGGCATTGGGCCCTGCTTGTGCAGGGCTT 5 105 0 GGCCCTGCTG 0.662158 -133 GGGCGGCTTTGGCCGCGATCGGTCGGCATTG 5 126 0 GGCCGCGACG 0.911095 -112 CGGCCAAAGCCGCCCACGCTGCACGCAGAAC 5 142 1 CGCCCACGTG 0.876809 -96 TCCCACCGCTAGCCACGAGATCGTTTC 5 221 0 CGCTAGCCCG 0.854892 -17 GTGGTTGGTTGGTCCGAGTGGCGGAATGGCA 6 27 0 GGTCCGAGGG 0.612113 -274 CGCCGAGCTAGGTTGGGCCGGTGCGGGGCAA 6 84 0 GGTTGGGCGG 0.865698 -217 CAACCTAGCTCGGCGACGATGCGCCCCGGGT 6 100 1 CGGCGACGTG 0.870947 -201 CTCCTCACCCCGTTACCCGGGGCGCATCGTC 6 114 0 CGTTACCCGG 0.793631 -187 CCGGGTAACGGGGTGAGGAGGAGCCGGGCAA 6 125 1 GGGTGAGGGG 0.896377 -176 GGCGCATCGTCGCCGAGCTCGATTTGATTGC 6 152 0 CGCCGAGCCG 0.965964 -149 CTCCTCACCCCGTTACCCGGGGCGCATCGTC 6 172 0 CGTTACCCGG 0.793631 -129 CCGGGTAACGGGGTGAGGAGGAGCCAGGCAA 6 183 1 GGGTGAGGGG 0.896377 -118 AAATCCAGCTCGGCGACGACGCGGGCCCGGC 6 229 1 CGGCGACGCG 0.563308 -72 GCCCCTGGCGCGCCGGGCCCGCGTCGTCGCC 6 240 0 CGCCGGGCCG 0.864525 -61 GGGCCCGGCGCGCCAGGGGCGATCGGCTCGC 6 251 1 CGCCAGGGCG 0.71906 -50 AGGGGCGATCGGCTCGCCAGGGTTACGAGTG 6 265 1 GGCTCGCCGG 0.957282 -36 CGGGTTTGGCGGCCGACGTCGGCG 8 4 0 GGCCGACGCG 0.964124 -264 ATATCCATCGCGGCGCGCAGGATCTGCGCCC 8 34 0 CGGCGCGCGG 0.979859 -234 TCGGTGAAGGGGCTCTCGGGGCTGTCCATCG 8 69 1 GGCTCTCGGG 0.793012 -199 GGCTGTCCATCGGCGAGCTTGCCGGGCGGCT 8 88 1 CGGCGAGCTG 0.873651 -180 CTTGCCGGGCGGCTGGGCATGAGCAAGTCGG 8 105 1 GGCTGGGCTG 0.857512 -163 TGCCGGAACAGGCCCGACTTGCTCATGCCCA 8 118 0 GGCCCGACTG 0.673014 -150 TCCGGCATTTCGGCGCCAAGGAGCAGCTGCA 8 142 1 CGGCGCCAGG 0.919102 -126 GCTTCGAACACGCTCACGGCGGCCTCGACGG 8 181 0 CGCTCACGCG 0.581072 -87 GCGATGGCAGCGCCGCCCGGGGTGGACCGGG 8 228 1 CGCCGCCCGG 0.990116 -40 CAGAGAGTTCCGGCATCCATGTCAAATCACG 9 31 0 CGGCATCCTG 0.389761 -264 AATATTCGTCCGTCGCCGATGGTGCGCGAAA 9 99 0 CGTCGCCGTG 0.841554 -196 CGTCCCGCACCGGTCAACTGGTCTAGCCACA 9 252 0 CGGTCAACGG 0.706172 -43 CGCGCTCATTGGCCAGAGACGG 11 2 0 GGCCAGAGCG 0.558966 -107 CGTGCTGAGAGGCCGACACTGTCCCGCGCTC 11 26 0 GGCCGACATG 0.729042 -83 CGGGCGGATTCGGCCTCGTGGAGCAACGGCT 11 67 0 CGGCCTCGGG 0.838783 -42 AGGCCGAATCCGCCCGCCAAGGCGTTAGCTT 11 82 1 CGCCCGCCAG 0.674139 -27 GCTTTATCCCGGCCGCGAGCGCGCGTGTTTG 12 28 0 GGCCGCGACG 0.880687 -41 GGCTCCCAAGGTTACCTGGCG 12 58 0 GGCTCCCAGG 0.881139 -11 TGGGAGCCAGCGCCAACGCGGACGCTCGACG 13 55 1 CGCCAACGGG 0.895745 -189 CCAACGCGGACGCTCGACGGGCGTGGACCCT 13 67 1 CGCTCGACGG 0.809744 -177 CGCGGGTCCGCGGTCAGCAGGGGGATGTCGA 13 151 0 CGGTCAGCGG 0.905484 -93 GGTCAGCCCGGGCTCCCGGCGCAGACGCGGG 13 176 0 GGCTCCCGCG 0.937975 -68 TGATCCGAGGCGTCAGCAGCGAAGGTGCTCA 14 75 0 CGTCAGCACG 0.354508 -78 GATAGGTCGTGGGCGCAGTCGCGGCGGTCAG 14 116 1 GGGCGCAGCG 0.862245 -37 GCAGTCGCGGCGGTCAGCGCGTAGTTGTTTG 14 130 1 CGGTCAGCCG 0.876365 -23 CCGAGCCTAGCGCTGCGCTCGCCAACACGAC 15 23 1 CGCTGCGCCG 0.967881 -37 GCTTGTGCCAGGGTGTACCCGCCCGATTGCC 16 18 1 GGGTGTACCG 0.399393 -167 CAACAGTGTCGGTTGCCGGCGGCAATCGGGC 16 38 0 GGTTGCCGCG 0.874515 -147 GGTGACCGTCCGGTACCCGGGCATGGGACTG 16 131 1 CGGTACCCGG 0.895141 -54 AGCAGACGGCCTCACAGGTTTCTTGGTT 16 167 0 GGCCTCACGG 0.418424 -18 CGTCGCGGGACGTTCGCGATGCGCCGGTCTG 17 43 0 CGTTCGCGTG 0.591191 -214 CCTCCTCGGACGCCGCGACGGGGTCTGATCC 17 86 0 CGCCGCGAGG 0.913586 -171 GAGGAGCACCCGCTGCACATGAAGCACTTTA 17 113 1 CGCTGCACTG 0.733891 -144 GTTGACTCTGCGTCCACCGTGTGGGCTACTC 17 147 1 CGTCCACCTG 0.765293 -110 GCTGACTCTGCGTCCACCACGGGAATGTGCG 17 177 0 CGTCCACCCG 0.892312 -80 CCAGAATAGGGGGCGCGCCGGCCTGCGCTGA 17 203 0 GGGCGCGCGG 0.978237 -54 ******** ** Masking position 2 Map Score: 107.989 Number of sites scoring better than the average of aligned sites = 114185 Number in coding regions = 107945 Number in noncoding regions = 6240 Number of orfs with sites within 600 bp upstream = 1625 Fraction of orfs with sites within 600 bp upstream = 0.261002 Motif number 3 CGAAGAGGCGTTCGGGGTGGTGGTAGTCGT 1 203 0 TTCGGGGTGG 0.865618 -98 CCCGGCTTGGCCGGAACTAG 2 1 1 CCCGGCTTGG 0.938741 -79 GCCACCGCTGCCCCGGCAGTGGCTAGTTCC 2 23 0 CCCCGGCAGT 0.601747 -57 GATCGGCGCCACCCGCGAGGGCGGCCGCAT 4 56 0 ACCCGCGAGG 0.719971 -245 ACCCTTGTGCCCCCGGCAGGATTCGAACCT 4 118 1 CCCCGGCAGG 0.977452 -183 CGCCATGGGGCCCCGCCAGAGTAGCGCATC 4 214 1 CCCCGCCAGA 0.775227 -87 CAACCAACCACCGGGGCTGGCAGCTAAGGC 6 47 1 CCGGGGCTGG 0.776248 -254 CCCAACCTAGCTCGGCGACGATGCGCCCCG 6 98 1 CTCGGCGACG 0.891319 -203 CGACGATGCGCCCCGGGTAACGGGGTGAGG 6 113 1 CCCCGGGTAA 0.832649 -188 TCAAATCGAGCTCGGCGACGATGCGCCCCG 6 156 1 CTCGGCGACG 0.891319 -145 CGACGATGCGCCCCGGGTAACGGGGTGAGG 6 171 1 CCCCGGGTAA 0.832649 -130 GCAAATCCAGCTCGGCGACGACGCGGGCCC 6 227 1 CTCGGCGACG 0.891319 -74 AGGATCTGCGCCCGGGTTTGGCGGCCGACG 8 17 0 CCCGGGTTTG 0.873118 -251 TGGATATCGCCTCGGTGAAGGGGCTCTCGG 8 58 1 CTCGGTGAAG 0.706336 -210 TGAAGGGGCTCTCGGGGCTGTCCATCGGCG 8 73 1 CTCGGGGCTG 0.881044 -195 AGGTCGTGGCTCCCGCGATGGCAGCGCCGC 8 214 1 TCCCGCGATG 0.623556 -54 GGCAGCGCCGCCCGGGGTGGACCGGGTGCG 8 233 1 CCCGGGGTGG 0.996268 -35 CTAGCGATTCCTCGGCGTTATTTCATCGCG 9 148 1 CTCGGCGTTA 0.618643 -147 TGGTCGATAGCCCCGGTCGGGCTATGTTCC 9 218 1 CCCCGGTCGG 0.858095 -77 GGCTATGTTCCCCGGTGTGGCTAGACCAGT 9 237 1 CCCGGTGTGG 0.977695 -58 AGCCCGGGCTCCCGGCGCAGACGCGGGTCC 13 173 0 CCCGGCGCAG 0.915363 -71 GCGCCGGGAGCCCGGGCTGACCTGCCACAC 13 185 1 CCCGGGCTGA 0.920465 -59 ACTAGACGAACTCGGTGTGGCAGGTCAGCC 13 199 0 CTCGGTGTGG 0.928821 -45 ATCAGCAGTGCCCCGGGTGGGTCTTGACGT 16 82 1 CCCCGGGTGG 0.993901 -103 CCGTCCGGTACCCGGGCATGGGACTGGAAC 16 136 1 CCCGGGCATG 0.947538 -49 GGTAGTTGCTCCGGGATGGTGAGAAGGA 17 9 1 CTCCGGGATG 0.915084 -248 ACTCTGCGTCCACCGTGTGGGCTACTCGCA 17 151 1 CACCGTGTGG 0.530422 -106 CTCGCACATTCCCGTGGTGGACGCAGAGTC 17 175 1 CCCGTGGTGG 0.884542 -82 TGTTTCCCTTTCCGGGGAAGATTGGAGACA 17 237 0 TCCGGGGAAG 0.799707 -20 ********** Masking position 5 Map Score: 40.5154 Number of sites scoring better than the average of aligned sites = 10212 Number in coding regions = 9284 Number in noncoding regions = 928 Number of orfs with sites within 600 bp upstream = 600 Fraction of orfs with sites within 600 bp upstream = 0.0963701 Motif number 4 CCACCCCGAACGCCTCTTCGACCACTAGCG 1 213 1 CGCCTCTTCG 0.858895 -88 CCCACAAGTGCGCCACGTTGGTAGCCTCTG 1 278 1 CGCCACGTTG 0.952366 -23 CGAGGGCGGCCGCATAGTTGGCTTCGTGGT 4 41 0 CGCATAGTTG 0.922483 -260 CATGGCGCAACGTGTCGTCGTGCGCCCCCG 4 191 0 CGTGTCGTCG 0.983088 -110 GCCAGAGTAGCGCATCGCGGCTACCCACTG 4 228 1 CGCATCGCGG 0.793483 -73 TTACCCGGGGCGCATCGTCGCCGAGCTAGG 6 103 0 CGCATCGTCG 0.984303 -198 TTACCCGGGGCGCATCGTCGCCGAGCTCGA 6 161 0 CGCATCGTCG 0.984303 -140 GCGCCGGGCCCGCGTCGTCGCCGAGCTGGA 6 232 0 CGCGTCGTCG 0.994921 -69 CGATGGATATCGCCTCGGTGAAGGGGCTCT 8 55 1 CGCCTCGGTG 0.960576 -213 CGAATCCGCCCGCCAAGGCGTTAGCTTTGT 11 86 1 CGCCAAGGCG 0.505261 -23 GGCGGCGTGTCGCTGGACAAACACG 12 6 1 CGTGTCGCTG 0.928805 -63 GTCGAGCGTCCGCGTTGGCGCTGGCTCCCA 13 55 0 CGCGTTGGCG 0.816144 -189 CGTCGTAAAACGTGAAGTTGTGCCGCAGGG 13 94 0 CGTGAAGTTG 0.776989 -150 ACACCGAGTTCGTCTAGTTGCGGCCGGCGC 13 211 1 CGTCTAGTTG 0.871879 -33 CGGCGGTCAGCGCGTAGTTGTTTGGT 14 137 1 CGCGTAGTTG 0.973633 -16 CCAAAGGTTTCGTGTCGTCGTGTTGGCGAG 15 40 0 CGTGTCGTCG 0.983088 -20 CGTCCCGCGACGGGAAGCCGGTCTGGATCA 17 62 1 CGGGAAGCCG 0.542894 -195 ********** Masking position 2 Map Score: 27.779 Number of sites scoring better than the average of aligned sites = 7823 Number in coding regions = 7261 Number in noncoding regions = 562 Number of orfs with sites within 600 bp upstream = 424 Fraction of orfs with sites within 600 bp upstream = 0.0681015 Motif number 5 GTTGAGCCGCCGGTTGCCCACTGGTCGATATGGTGG 1 33 0 CGGCCCTGTC 0.88064 -268 ACCACCACCCCGAACGCCTCTTCGACCACTAGCGGG 1 209 1 CGGCCTTGAC 0.497685 -92 CCGGAACTAGCCACTGCCGGGGCAGCGGTGGCGGTT 2 21 1 CCGCCGGAGC 0.822474 -59 TGGTCGAAATAGGGTGGTTTTGTGTCTGTTCGGCGG 3 21 0 AGGGTTGGTC 0.343404 -70 CGACCAGAATCGGGTGCTTTTGCGTCTGCTCGGCCA 3 51 1 CGGCTTGGTC 0.877695 -40 GGCGCTAGCTTAGTTGGCCGAGCAGACG 3 73 0 CGGCTTTGGC 0.880099 -18 GCGGCCGCATAGTTGGCTTCGTGGTCTCGCTCTCAA 4 30 0 AGGCTTTGTC 0.194194 -271 GCCAACTATGCGGCCGCCCTCGCGGGTGGCGCCGAT 4 49 1 CGGCCCGGGG 0.801507 -252 CCTCCGGAGCAGAAGGCCGCAGGTTCGAATCCTGCC 4 132 0 AGGCCGGTTC 0.79562 -169 GGGGATAGAGCGTCTGCCTCCGGAGCAGAAGGCCGC 4 148 0 CGGCCTGAGC 0.954508 -153 AACGTGTCGTCGTGCGCCCCCGTAGCTCAGGGGATA 4 177 0 CGGCCCGAGC 0.956484 -124 CACGACGACACGTTGCGCCATGGGGCCCCGCCAGAG 4 199 1 CGCGCCGGGC 0.673325 -102 GGGCCTCCCTCGTTGGCTGCTGTTCCAGGCGCGACC 5 12 1 CGGCTGGTCC 0.896546 -226 TGGCCGCGATCGGTCGGCATTGGGCCCTGCTTGTGC 5 112 0 CGGGCAGGCC 0.638035 -126 CTGCGTGCAGCGTGGGCGGCTTTGGCCGCGATCGGT 5 134 0 CGGCGGTGGC 0.819661 -104 ACAGGCATCTCGGATGCCTGTTCTGCGTGCAGCGTG 5 156 0 CGGCCTTTGC 0.935882 -82 TTGGTTGGTCCGAGTGGCGGAATGGCAGACGCGCTA 6 18 0 CGGGCGAGGC 0.92757 -283 CTGCCAGCCCCGGTGGTTGGTTGGTCCGAGTGGCGG 6 34 0 CGGTTGTGTC 0.160184 -267 CGGGGCAATCCGATAGCCTTAGCTGCCAGCCCCGGT 6 56 0 CGGCCTGTGC 0.983739 -245 GGCCCAACCTAGCTCGGCGACGATGCGCCCCGGGTA 6 96 1 AGGGCGGTGC 0.896228 -205 AATCAAATCGAGCTCGGCGACGATGCGCCCCGGGTA 6 154 1 AGGGCGGTGC 0.896228 -147 AAGCAAATCCAGCTCGGCGACGACGCGGGCCCGGCG 6 225 1 AGGGCGGCGC 0.668481 -76 CCTGGCGAGCCGATCGCCCCTGGCGCGCCGGGCCCG 6 250 0 CGGCCCGCGC 0.936685 -51 CGCCGACGTCGGCCGCCAAACCCGGGCGCAGA 8 7 1 CGGCCGAACC 0.552117 -261 TGGACAGCCCCGAGAGCCCCTTCACCGAGGCGATAT 8 61 0 CGGCCCTACC 0.611901 -207 TCGGCGAGCTTGCCGGGCGGCTGGGCATGAGCAAGT 8 97 1 TGGGCGTGGC 0.57397 -171 CCTCGACGGTCGCCAGCTGCAGCTGCTCCTTGGCGC 8 154 0 CGGCTGGTGC 0.966839 -114 AACACGCTCACGGCGGCCTCGACGGTCGCCAGCTGC 8 170 0 CGGCCTAGGT 0.207828 -98 ACCCGGTCCACCCCGGGCGGCGCTGCCATCGCGGGA 8 224 0 CCGGCGGTGC 0.87472 -44 AAATATTCGTCCGTCGCCGATGGTGCGCGAAAATCA 9 95 0 CCGCCGGTGC 0.930355 -200 TCGGCCTCTCAGCACGGTCTCTTTGCAGCCGTTGCT 11 41 1 AGGGTCTTGC 0.215125 -68 AGCGCCAACGCGGACGCTCGACGGGCGTGGACCCTG 13 63 1 CGGCTCCGGC 0.591571 -181 GCGTCTGCGCCGGGAGCCCGGGCTGACCTGCCACAC 13 179 1 CGGCCCGTGA 0.571308 -65 GGCGCTCACCTTAGCGCCGGCCGCAACT 13 226 0 CGACCTGGCC 0.429675 -18 TTCGGGAAATCGATCGGTTTGGCTGCACGAATCCTG 14 21 1 CGGGTTGTGC 0.886227 -132 AACTACGCGCTGACCGCCGCGACTGCGCCCACGACC 14 120 0 TGGCCGATGC 0.344691 -33 CCAAAGGTTTCGTGTCGTCGTGTTGG 15 44 0 CCGGTTGGTC 0.297435 -16 GTTCGCGATGCGCCGGTCTGAGGTTCCTTCTCACCA 17 27 0 CGGTCTGTTC 0.445081 -230 TCGGACGCCGCGACGGGGTCTGATCCAGACCGGCTT 17 76 0 CGGGGTGTCC 0.422451 -181 GTAGCCCACACGGTGGACGCAGAGTCAACGTGTAAA 17 140 0 CGGACGGGTC 0.645785 -117 GCAGAGTCAGCGCAGGCCGGCGCGCCCCCTATTCTG 17 197 1 CGGCCGGGCC 0.985722 -60 ** **** * *** Masking position 6 Map Score: 42.3136 Number of sites scoring better than the average of aligned sites = 36153 Number in coding regions = 34017 Number in noncoding regions = 2136 Number of orfs with sites within 600 bp upstream = 1032 Fraction of orfs with sites within 600 bp upstream = 0.165757 Motif number 6 CACCGCGGTCGAGGTGGGGTGGCGGGATCC 1 164 0 GAGGTGGGGT 0.832039 -137 AGAGGCGTTCGGGGTGGTGGTAGTCGTTGG 1 200 0 GGGGTGGTGG 0.941184 -101 TTGACGTTTTGTGGTCAGGGCGCGGCCCGC 1 240 0 GTGGTCAGGG 0.855127 -61 TGCCGGGGCAGCGGTGGCGGTTCACACCGC 2 35 1 GCGGTGGCGG 0.962291 -45 TGCGCGTTTGGAGGTCCCTGAGCG 2 66 1 GAGGTCCCTG 0.927274 -14 ATCCGTTGCGGTGGTCAGTGGGTAGCCGCG 4 243 0 GTGGTCAGTG 0.701095 -58 CCTATGGGCTGAGGTGGTTGGGCTTCGAAT 4 271 0 GAGGTGGTTG 0.968245 -30 ACGGGGTGAGGAGGAGCCGGGCAATCAAAT 6 132 1 GAGGAGCCGG 0.798641 -169 GTTCGAAGCCGAGGTCGTGGCTCCCGCGAT 8 203 1 GAGGTCGTGG 0.985088 -65 GGGGGATGTCGAGGTGACTGGCCAGTGCCA 13 133 0 GAGGTGACTG 0.946991 -111 CGATTTCCCGAAGGTGGCGGCG 14 3 0 AAGGTGGCGG 0.897749 -150 AAAGCCTAGATAGGTCGTGGGCGCAGTCGC 14 108 1 TAGGTCGTGG 0.82578 -45 CGAGGTCATTGCCCGAGCCTA 15 2 1 GAGGTCATTG 0.906054 -58 ********** Masking position 4 Map Score: 10.0884 Number of sites scoring better than the average of aligned sites = 4615 Number in coding regions = 4338 Number in noncoding regions = 277 Number of orfs with sites within 600 bp upstream = 223 Fraction of orfs with sites within 600 bp upstream = 0.0358175 Motif number 7 CCGTTTCCTTGTCTGCCAGCCTTTCCCGACT 1 114 0 GTCTGCAGCC 0.849758 -187 AGTCGTTGGTGTGGGCACCGCGGTCGAGGTG 1 178 0 GTGGGCCCGC 0.956445 -123 CGCGCACGCGGTGTGAACCGCCACCGCTGCC 2 41 0 GTGTGACCGC 0.791483 -39 GTGGTTTTGTGTCTGTTCGGCGGCACAAGTA 3 13 0 GTCTGTCGGC 0.925437 -78 GTGCTTTTGCGTCTGCTCGGCCAACTAAGCT 3 64 1 GTCTGCCGGC 0.993355 -27 GGCTACAACAATGTGATCGGCGCCACCCGCG 4 69 0 ATGTGACGGC 0.660418 -232 ATCAACCCTTGTGCCCCCGGCAGGATTCGAA 4 114 1 GTGCCCCGGC 0.892459 -187 GATGGTTTGGGTGTGTTCCCCACCTGATTCC 5 66 0 GTGTGTCCCC 0.791478 -172 TCTGCGTGCAGCGTGGGCGGCTTTGGCCGCG 5 140 0 GCGTGGCGGC 0.835014 -98 AGCTCGATTTGATTGCCCGGCTCCTCCTCAC 6 137 0 GATTGCCGGC 0.52998 -164 CGGCGACGACGCGGGCCCGGCGCGCCAGGGG 6 239 1 GCGGGCCGGC 0.731133 -62 GCCAGGGGCGATCGGCTCGCCAGGGTTACGA 6 262 1 ATCGGCCGCC 0.894778 -39 GTGTGCGCGCCCTGTCGGTAG 7 1 1 GTGTGCCGCC 0.995007 -22 CGGGCGCAGATCCTGCGCGCCGCGATGGATA 8 33 1 TCCTGCCGCC 0.758763 -235 GGGGTGGACCGGGTGCGCGCCCTCATGCATG 8 246 1 GGGTGCCGCC 0.977901 -22 ACGAGGCCGAATCCGCCCGCCAAGGCGTTAG 11 79 1 ATCCGCCGCC 0.866213 -30 TTGTGCCGCAGGGTCCACGCCCGTCGAGCGT 13 76 0 GGGTCCCGCC 0.841913 -168 GCGGACCCGCGTCTGCGCCGGGAGCCCGGGC 13 171 1 GTCTGCCCGG 0.790292 -73 GGTGTGGCAGGTCAGCCCGGGCTCCCGGCGC 13 185 0 GTCAGCCGGG 0.599633 -59 GAGCCTAGCGCTGCGCTCGCCAACACGACGA 15 25 1 CTGCGCCGCC 0.834374 -35 TTGTGCCAGGGTGTACCCGCCCGATTGCCGC 16 20 1 GTGTACCGCC 0.893136 -165 GTCAGCGCAGGCCGGCGCGCCCCCTATTCTG 17 202 1 GCCGGCCGCC 0.868382 -55 ****** **** Masking position 8 Map Score: 25.7357 Number of sites scoring better than the average of aligned sites = 8614 Number in coding regions = 7878 Number in noncoding regions = 736 Number of orfs with sites within 600 bp upstream = 551 Fraction of orfs with sites within 600 bp upstream = 0.0884998 Motif number 8 AACCGATATCGACAAACTCACCTTCACCTGC 1 66 1 GACAAACCAC 0.449849 -235 GGGAAAGGCTGGCAGACAAGGAAACGGTCCG 1 118 1 GGCAGACAGG 0.913632 -183 GCTAGTTCCGGCCAAGCCGGG 2 1 0 GCCAAGCGGG 0.764205 -79 CTCAGGGACCTCCAAACGCGCACGCGGTGTG 2 57 0 TCCAAACCGC 0.676569 -23 CTGCTCCGGAGGCAGACGCTCTATCCCCTGA 4 156 1 GGCAGACCTC 0.887811 -145 ACCGATCGCGGCCAAAGCCGCCCACGCTGCA 5 134 1 GCCAAAGCGC 0.850868 -104 GTGGCGGAATGGCAGACGCGCTAGCTTGAG 6 10 0 GGCAGACCGC 0.993794 -291 GGAGGAGCCAGGCAATCAGCCCACGTAAGCA 6 199 1 GGCAATCGCC 0.323205 -102 CCCCTGGCGCGCCGGGCCCGCGTCGTCGCCG 6 239 0 GCCGGGCCGC 0.912863 -62 GACGTCGGCCGCCAAACCCGGGCGCAGATCC 8 15 1 GCCAAACCGG 0.951255 -253 CCAGCCGCCCGGCAAGCTCGCCGATGGACAG 8 90 0 GGCAAGCCGC 0.987378 -178 CTCCCGCGATGGCAGCGCCGCCCGGGGTGGA 8 223 1 GGCAGCGCGC 0.787659 -45 TCCGGCAGACTAGCCGTATCCGCG 9 281 0 GGCAGACAGC 0.957445 -14 CGTGTCGCTGGACAAACACGCGCGCTCGCGG 12 16 1 GACAAACCGC 0.945963 -53 GGGCTCCCGGCGCAGACGCGGGTCCGCGGTC 13 167 0 CGCAGACCGG 0.90408 -77 AACTCGGTGTGGCAGGTCAGCCCGGGCTCCC 13 190 0 GGCAGGTAGC 0.458796 -54 GCCGCAACTAGACGAACTCGGTGTGGCAGGT 13 204 0 GACGAACCGG 0.611852 -40 AGGTCGTGGGCGCAGTCGCGGCGGTCAGCGC 14 119 1 CGCAGTCCGG 0.733922 -34 GGTTGCCGGCGGCAATCGGGCGGGTACACCC 16 28 0 GGCAATCGGC 0.86867 -157 AGTCAGCGCAGGCCGGCGCGCCCCCTATTCT 17 201 1 GGCCGGCCGC 0.934217 -56 ******* *** Masking position 3 Map Score: 16.7592 Number of sites scoring better than the average of aligned sites = 8444 Number in coding regions = 7770 Number in noncoding regions = 674 Number of orfs with sites within 600 bp upstream = 533 Fraction of orfs with sites within 600 bp upstream = 0.0856087 Motif number 9 ATATCGACAAACTCACCTTCACCTGCACAC 1 71 1 ACTCACCTTC 0.84398 -230 GTGGTCTCGCTCTCAAATTCGTCGGGGTAA 4 16 0 TCTCAAATTC 0.257561 -285 CGAGATCGTTTCACACCTTCTCAAGGTTCA 5 203 0 TCACACCTTC 0.905112 -35 GTTACCCGGGGCGCATCGTCGCCGAGCTAG 6 104 0 GCGCATCGTC 0.908666 -197 GTTACCCGGGGCGCATCGTCGCCGAGCTCG 6 162 0 GCGCATCGTC 0.908666 -139 ACAGCCCCGAGAGCCCCTTCACCGAGGCGA 8 64 0 GAGCCCCTTC 0.765373 -204 TGGACCGGGTGCGCGCCCTCATGCATGC 8 250 1 GCGCGCCCTC 0.857625 -18 CCTGATTTTCGCGCACCATCGGCGACGGAC 9 93 1 GCGCACCATC 0.976607 -202 GGACCCTGCGGCACAACTTCACGTTTTACG 13 91 1 GCACAACTTC 0.820018 -153 GGCGCTCACCTTAGCGCCGGCCG 13 231 0 GCTCACCTTA 0.784222 -13 GGTTTCACATGAGCACCTTCGCTGCTGACG 14 66 1 GAGCACCTTC 0.95 -87 TGAGGTTCCTTCTCACCATCCCGGAGCAAC 17 15 0 TCTCACCATC 0.831856 -242 TGTGGGCTACTCGCACATTCCCGTGGTGGA 17 166 1 TCGCACATTC 0.859728 -91 ********** Masking position 9 Map Score: 5.45118 Number of sites scoring better than the average of aligned sites = 3027 Number in coding regions = 2812 Number in noncoding regions = 215 Number of orfs with sites within 600 bp upstream = 208 Fraction of orfs with sites within 600 bp upstream = 0.0334083 Motif number 10 TGGTCGATATGGTGGACTTCGCACCGGTCA 1 18 0 GGTGGACTTC 0.909124 -283 GTCGAAATAGGGTGGTTTTGTGTCTGTTCG 3 25 0 GGTGGTTTTG 0.381465 -66 GGCTGAGGTGGTTGGGCTTCGAATCCGTTG 4 265 0 GTTGGGCTTC 0.797254 -36 CGATTTGATTGCCCGGCTCCTCCTCACCCC 6 134 0 GCCCGGCTCC 0.825679 -167 TCGTCGCCGAGCTCGATTTGATTGCCCGGC 6 147 0 GCTCGATTTG 0.868878 -154 TCGTCGCCGAGCTGGATTTGCTTACGTGGG 6 218 0 GCTGGATTTG 0.855187 -83 CGCCAGGGGCGATCGGCTCGCCAGGGTTAC 6 261 1 GATCGGCTCG 0.746534 -40 TGCGCGCCGCGATGGATATCGCCTCGGTGA 8 46 1 GATGGATATC 0.363701 -222 TTGCCGGGCGGCTGGGCATGAGCAAGTCGG 8 106 1 GCTGGGCATG 0.789423 -162 GCCGGAACAGGCCCGACTTGCTCATGCCCA 8 118 0 GCCCGACTTG 0.874707 -150 GGAGCCACGACCTCGGCTTCGAACACGCTC 8 197 0 CCTCGGCTTC 0.743872 -71 ATTTAGCCGTGGCCGATTTGGGGCTTGGCC 9 64 1 GGCCGATTTG 0.664813 -231 GTAGATCGGCTTCTTCAGGCAAC 13 4 1 GATCGGCTTC 0.947048 -240 CAACAGATTTGGTGGGGTTCAACTCTGGGA 13 30 1 GGTGGGGTTC 0.726565 -214 CAGCCAAACCGATCGATTTCCCGAAGGTGG 14 16 0 GATCGATTTC 0.809558 -137 TCCTGATATTGCTGGGTTTCACATGAGCAC 14 52 1 GCTGGGTTTC 0.944956 -101 GTCTGATCCAGACCGGCTTCCCGTCGCGGG 17 65 0 GACCGGCTTC 0.901829 -192 ********** Masking position 5 Map Score: 10.0514 Number of sites scoring better than the average of aligned sites = 4545 Number in coding regions = 4217 Number in noncoding regions = 328 Number of orfs with sites within 600 bp upstream = 267 Fraction of orfs with sites within 600 bp upstream = 0.0428847 Motif number 11 TCCCGACTAGCTTGTGGTTGGGTGTGCAGGTGA 1 89 0 CTTTGGTGGT 0.87065 -212 CCCTCGTTGGCTGCTGTTCCAGGCGCGACCAGC 5 18 1 CTGTGTTAGG 0.944466 -220 GCTTTTTTTGCTGATGGTTTGGGTGTGTTCCCC 5 76 0 CTGTGGTGGG 0.990756 -162 GCATTGGGCCCTGCTTGTGCAGGGCTTTTTTTG 5 99 0 CTGTTGTAGG 0.920077 -139 TCTGGTGATTGAGGAGTGGCGCAG 10 2 1 CTGTGATAGG 0.967731 -23 GCAACCGACACTGTTGGTGTAGTGACCAAATCA 16 53 1 CTGTGGTAGT 0.977258 -132 ACCCGGGGCACTGCTGATTTGGTCACTACACCA 16 67 0 CTGTGATGGT 0.946047 -118 *** **** *** Masking position 8 Map Score: 2.2817 Number of sites scoring better than the average of aligned sites = 403 Number in coding regions = 377 Number in noncoding regions = 26 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548 Motif number 12 CTTCGCACCGGTCACCGGGTG 1 2 0 GTCACCGGGT 0.956156 -299 GGCGCAACGTGTCGTCGTGCGCCCCCGTAG 4 188 0 GTCGTCGTGC 0.960642 -113 GGGGCGCATCGTCGCCGAGCTAGGTTGGGC 6 97 0 GTCGCCGAGC 0.98675 -204 GGGGCGCATCGTCGCCGAGCTCGATTTGAT 6 155 0 GTCGCCGAGC 0.98675 -146 GGCCCGCGTCGTCGCCGAGCTGGATTTGCT 6 226 0 GTCGCCGAGC 0.98675 -75 TCGCCCCTGGCGCGCCGGGCCCGCGTCGTC 6 243 0 CGCGCCGGGC 0.949951 -58 CATCGGCGAGCTTGCCGGGCGGCTGGGCAT 8 95 1 CTTGCCGGGC 0.887971 -173 TCACGGCGGCCTCGACGGTCGCCAGCTGCA 8 169 0 CTCGACGGTC 0.771823 -99 TGCACAGTTGGTCATAGGGCGGCTCGTTCC 9 180 0 GTCATAGGGC 0.620889 -115 TCCCGCACCGGTCAACTGGTCTAGCCACAC 9 251 0 GTCAACTGGT 0.380034 -44 AACGCGGACGCTCGACGGGCGTGGACCCTG 13 69 1 CTCGACGGGC 0.9809 -175 AAGGTTTCGTGTCGTCGTGTTGGCGAGCGC 15 37 0 GTCGTCGTGT 0.875248 -23 TGGACGCAGAGTCAACGTGTAAAGTGCTTC 17 133 0 GTCAACGTGT 0.72421 -124 ********** Masking position 2 Map Score: 15.0668 Number of sites scoring better than the average of aligned sites = 7799 Number in coding regions = 7269 Number in noncoding regions = 530 Number of orfs with sites within 600 bp upstream = 429 Fraction of orfs with sites within 600 bp upstream = 0.0689046 Motif number 13 ********** No masking Map Score: 4.79149e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: 4.79149e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: 4.79149e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0