AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00350_mtub_reg_100.orf -o00350_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: Rv1178 32 hypothetical protein Rv1178 Rv2689c 173 hypothetical protein Rv2689c Input sequences: #1 Rv0144 101 hypothetical protein Rv0144 #2 Rv0145 88 hypothetical protein Rv0145 #3 Rv0146 42 hypothetical protein Rv0146 #4 Rv0147 94 hypothetical protein Rv0147 #5 Rv0187 300 hypothetical protein Rv0187 #6 Rv0223c 98 hypothetical protein Rv0223c #7 Rv0224c 35 hypothetical protein Rv0224c #8 gabD2 25 gabD2 #9 Rv0235c 34 hypothetical protein Rv0235c #10 Rv0236c 300 hypothetical protein Rv0236c #11 aspC 30 aspC #12 Rv0338c 108 hypothetical protein Rv0338c #13 Rv0552 77 hypothetical protein Rv0552 #14 menD 42 menD #15 Rv0557 61 hypothetical protein Rv0557 #16 adhB 98 adhB #17 Rv0767c 201 hypothetical protein Rv0767c #18 Rv0858c 156 hypothetical protein Rv0858c #19 Rv1009 207 hypothetical protein Rv1009 #20 fdxC 212 fdxC #21 hisD 99 hisD #22 gabD1 300 gabD1 #23 Rv1861 300 hypothetical protein Rv1861 #24 adhA 73 adhA #25 cobG 224 cobG #26 cobL 67 cobL #27 Rv2073c 29 hypothetical protein Rv2073c #28 cobC 300 cobC #29 adhE2 300 adhE2 #30 Rv3292 30 hypothetical protein Rv3292 #31 aldB 26 aldB #32 fadD3 47 fadD3 #33 hisC2 300 hisC2 Motif number 1 ATCCGACGATCAGCAGCGCAACCATGGCCC 1 30 1 CAGCAGCGCA 0.906764 -72 GGACGTACGCGATCACCGCCGCTGTGCGGC 1 66 1 GATCACCGCC 0.717373 -36 TTTCGGATCTCCTCGCCGCACAGCGGCGGT 1 80 0 CCTCGCCGCA 0.895929 -22 GAGACCTAACCGGCGGCCCCGAAGCGTAGT 2 13 1 CGGCGGCCCC 0.958028 -76 CAATTCGTCGCCGCAGGTGCAGCGG 5 6 1 CGTCGCCGCA 0.963469 -295 CGGTAGGCGTCACCGGCGCCAGCACAGTGG 5 33 1 CACCGGCGCC 0.98302 -268 CGCGACCACCGACCGTCGCGCGCCAGCAGG 5 274 0 GACCGTCGCG 0.966125 -27 GTGACGCCATGACCGCCGGCGACGATGCCG 6 51 1 GACCGCCGGC 0.914083 -48 CGACGATGCCGAGCGCAGCGATGAGGAGGA 6 70 1 GAGCGCAGCG 0.97271 -29 CGATGAGGAGGAGCGGCGCAT 6 88 1 GAGCGGCGCA 0.993911 -11 GTCGATAGCCTAGCGGGCCGTAGGGTGTGC 7 13 1 TAGCGGGCCG 0.697519 -23 CGATGAACCGGATCGTCGCGCCCGCCGCCG 10 89 1 GATCGTCGCG 0.91854 -212 TCGTCGCGCCCGCCGCCGCAAGCGTGGTGG 10 101 1 CGCCGCCGCA 0.969494 -200 GTCTGTTGCTGGGCGCGGCCGCGATCTTCG 10 134 1 GGGCGCGGCC 0.541074 -167 GATGACGACGGATCGCCCCCGGGGAGTGGC 10 198 0 GATCGCCCCC 0.853765 -103 GCGGCGCCCGGGTCGCGGGGCTAGCTACGG 10 255 0 GGTCGCGGGG 0.75835 -46 CCCGCGACCCGGGCGCCGCAGGCTGAGGCG 10 266 1 GGGCGCCGCA 0.993176 -35 GCGACCCGGAGGCCGCCTCAGCCTGCGGCG 10 279 0 GGCCGCCTCA 0.664374 -22 GGACAGCCTTTCTCGCGGCGAAAGTCGCAC 12 25 1 TCTCGCGGCG 0.466706 -84 GAGATTACGAGGGCACGGCAGATCCAAATT 13 34 0 GGGCACGGCA 0.75773 -44 GCGCGGCCCGGCCATACGGT 14 1 1 GCGCGGCCCG 0.962423 -42 ACTGTCAGCGCCGGCTGTCGAAATG 15 47 0 CAGCGCCGGC 0.938199 -15 ATGGGACTGTCCGCGACGCGACGTGGCCCC 17 120 0 CCGCGACGCG 0.953137 -82 GCTATCGGATGGTCGCGGCAGGAGGCAAGC 17 174 0 GGTCGCGGCA 0.906392 -28 CCAACAGGTTGGCCGGGGGCCCTGTTAGGG 18 84 0 GGCCGGGGGC 0.756127 -73 GGGCGACGATGCGCGCCGCAGCGATACCTT 18 120 0 GCGCGCCGCA 0.982843 -37 CGGCGCGCATCGTCGCCCGGATAGGCTCGA 18 132 1 CGTCGCCCGG 0.611703 -25 GCGCGCCGAGCGGCCCATAACACCCGC 19 8 1 GAGCGGCCCA 0.968275 -200 CCCATAACACCCGCGCGCCGGAGTTGCTCA 19 24 1 CCGCGCGCCG 0.5234 -184 TGACCGTGTACGCCGACGCATGTGCCAAGT 20 60 1 CGCCGACGCA 0.931167 -153 CGCATTGCCTCAGCAGGGCCCGGAGGAAGC 20 130 1 CAGCAGGGCC 0.728801 -83 GCGAGGTGGACAGCAGCCCACACATAGCGG 20 164 1 CAGCAGCCCA 0.645212 -49 GGGCGGCGGCGCGGTCACGTAGA 21 87 0 CGGCGGCGCG 0.996707 -13 GCGACGCCCCAAGCGGCGCAACCAAATTCG 22 78 0 AAGCGGCGCA 0.760856 -223 GCGCCGCTTGGGGCGTCGCGAGAGATTCGG 22 89 1 GGGCGTCGCG 0.983042 -212 AAGCCGTGCACGCCGCAGCGCCTACGCCCT 22 150 0 CGCCGCAGCG 0.851191 -151 CGCTGCCCGTCCCCGGCGCGACCTATGGAG 23 47 0 CCCCGGCGCG 0.980944 -254 CGCCGGGGACGGGCAGCGGGTCGTGTGCGC 23 59 1 GGGCAGCGGG 0.821554 -242 CAAACGTGTGTGGCGCCCCACGGTGTTTTC 23 169 0 TGGCGCCCCA 0.78105 -132 TACCGTCGCCGGCCGCCGCAGTCACACTCA 24 38 0 GGCCGCCGCA 0.982731 -36 ATCATGCCGCTACCGTCGCCGGCCGCCGCA 24 48 0 TACCGTCGCC 0.552414 -26 TAGCTGCCGATAGCGTCGCGGTGTGCCGCG 25 46 1 TAGCGTCGCG 0.857948 -179 ACCGCGCGGACGCCGCGGCACACCGCGACG 25 59 0 CGCCGCGGCA 0.518225 -166 GGGCACGAGCGACCGCGCGGACGCCGCGGC 25 70 0 GACCGCGCGG 0.576993 -155 GCGGGTTTGAGGGCGCCGAGTCGCTCCACG 25 104 0 GGGCGCCGAG 0.897119 -121 CGATTGCGCGCATCGTGGCGGGTTTGAGGG 25 121 0 CATCGTGGCG 0.707959 -104 CGAGGATCAGGGTCAGGGCGTTTTCGATTG 25 145 0 GGTCAGGGCG 0.6705 -80 GACGGGACCTGAGCGCGGCGAGGCGGCGAC 25 182 1 GAGCGCGGCG 0.981903 -43 CGGGAGAATGGGTCGCCGCCTCGCCGCGCT 25 193 0 GGTCGCCGCC 0.971209 -32 CTGCGCTCTGCATCGTCGCGGA 26 3 0 CATCGTCGCG 0.892062 -65 CGACGATGCAGAGCGCAGCGATGCGGTGGG 26 15 1 GAGCGCAGCG 0.97271 -53 CGGGCGGTACCCCCACCGCATCGCTGCGCT 26 26 0 CCCCACCGCA 0.638886 -42 TTGCGGGGGAGAGCGGCGCCG 26 57 1 GAGCGGCGCC 0.993538 -11 GGCGGGAGCTTGCCGAGGCGGTAGTTGATC 28 46 0 TGCCGAGGCG 0.555564 -255 CCGATGGCTCGGGCGGCGGGAGCTTGCCGA 28 60 0 GGGCGGCGGG 0.982641 -241 CGACGTGCCGCAGCGGCGCATTCGATCGGG 28 101 0 CAGCGGCGCA 0.99171 -200 GGTCAACTGACAGCGGCGACGTGCCGCAGC 28 117 0 CAGCGGCGAC 0.700578 -184 CGCACACACTGCGCACCGCAGAGCTTCCGG 28 148 1 GCGCACCGCA 0.824615 -153 CGATCATCACCGCCGACGCCCTGTTAGCTG 28 238 1 CGCCGACGCC 0.926899 -63 ATGTCGCGGTTGTCGCCGCGTAGACAACGC 28 274 1 TGTCGCCGCG 0.902618 -27 CGCCGACGCGTTGTCTACGC 28 291 0 CGCCGACGCG 0.969459 -10 CGATGAGGAGGAGCGGCGCAGATGAGT 29 8 0 GAGCGGCGCA 0.993911 -293 TGACGATGCAGAGCGAAGCGATGAGGAGGA 29 26 0 GAGCGAAGCG 0.878454 -275 TCTGCATCGTCACCGGCGCGACTCATCTGC 29 44 1 CACCGGCGCG 0.993176 -257 CGATGAGCAGGAGCGGCGCAGATGAGTCGC 29 61 0 GAGCGGCGCA 0.993911 -240 TGACGATGCAGAGCGAAGCGATGAGCAGGA 29 79 0 GAGCGAAGCG 0.878454 -222 TCTGCATCGTCACCGGCGCGACTCATCTGC 29 97 1 CACCGGCGCG 0.993176 -204 CGATGAGCAGGAGCGGCGCAGATGAGTCGC 29 114 0 GAGCGGCGCA 0.993911 -187 TGACGATGCAGAGCGAAGCGATGAGCAGGA 29 132 0 GAGCGAAGCG 0.878454 -169 TCTGCATCGTCACCGGCGCGACTCATCTGC 29 150 1 CACCGGCGCG 0.993176 -151 CGATGAGCAGGAGCGGCGCAGATGAGTCGC 29 167 0 GAGCGGCGCA 0.993911 -134 TGACGATGCAGAGCGAAGCGATGAGCAGGA 29 185 0 GAGCGAAGCG 0.878454 -116 TCTGCATCGTCACCGGCGCGACTCATCTGC 29 203 1 CACCGGCGCG 0.993176 -98 CGATGAGGAGGAGCGGCGCAGATGAGTCGC 29 220 0 GAGCGGCGCA 0.993911 -81 TGACGATGCAGAGCGAAGCGATGAGGAGGA 29 238 0 GAGCGAAGCG 0.878454 -63 TCTGCATCGTCACCGGCGCGCATGGTCAGC 29 256 1 CACCGGCGCG 0.993176 -45 CGCTAGTAAAGAGCGCGCCCGAAGAGATTC 33 29 1 GAGCGCGCCC 0.872333 -272 AGGCGTGCCAGAGCGGCCGAATGGGGCTCA 33 202 0 GAGCGGCCGA 0.804431 -99 GCTAGGCCTCCGGCGGCTCGGGGAGTCCGG 33 253 0 CGGCGGCTCG 0.869944 -48 ********** Masking position 4 Map Score: 159.463 Number of sites scoring better than the average of aligned sites = 46298 Number in coding regions = 43166 Number in noncoding regions = 3132 Number of orfs with sites within 600 bp upstream = 1159 Fraction of orfs with sites within 600 bp upstream = 0.186155 Motif number 2 AGCGGTAGGCGTCACCGGCGCCAGCACAGTGG 5 31 1 GTCCCGCGCC 0.869579 -270 TCGTATCACCCTCATCCGTGTCGGGGATCCCC 5 143 1 CTCTCGTGTC 0.811233 -158 CATCGCTGCGCTCGGCATCGTCGCCGGCGGTC 6 61 0 CTCGCTCGTC 0.984347 -38 TGCGCCGCTCCTCCTCATCGCTGCGCTCGGCA 6 76 0 CTCTCTCGCT 0.984616 -23 TCATCGGTGGCTCCTCGACGGCTGTGGGTGCG 10 63 0 CTCTCACGGC 0.858844 -238 CTCCGAAGATCGCGGCCGCGCCCAGCAACAGA 10 135 0 CGCGCGCGCC 0.98943 -166 GCGATCCGTCGTCATCAGTGCTCAACCGGGTC 10 212 1 GTCTCGTGCT 0.591394 -89 GGCCGCCTCAGCCTGCGGCGCCCGGGTCGCGG 10 267 0 GCCGCGCGCC 0.845208 -34 CTGAGTGTAGGTCAACGGCGCTAGGGCGT 16 8 0 GTCACGCGCT 0.758523 -91 TTCTCCGACTCTCATCATCGATTGGACACTTG 17 25 1 CTCTCTCGAT 0.671057 -177 CGCTGCGGCGCGCATCGTCGCCCGGATAGGCT 18 127 1 CGCTCTCGCC 0.983687 -30 GCCGGAGTTGCTCAACATTGGCCGGTTCGTTA 19 40 1 CTCACTTGGC 0.418239 -168 AACGCATTGCCTCAGCAGGGCCCGGAGGAAGC 20 128 1 CTCGCGGGCC 0.925668 -85 GTGGGCTGCTGTCCACCTCGCCAAGGCTTCCT 20 153 0 GTCACTCGCC 0.908378 -60 GGCGGCTCCTCTTTGCCGGTCCTTTCT 21 6 1 CTCTCTTGCC 0.947234 -94 AAGCCGTGCACGCCGCAGCGCCTACGCCCTGG 22 148 0 CGCGCGCGCC 0.989431 -153 CGCTTTTCTGCTGTTCAGCGGTGCTTTCAGGT 23 132 0 CTGTCGCGGT 0.801354 -169 TAGCGTCGCGGTGTGCCGCGGCGTCCGCGCGG 25 56 1 GTGGCGCGGC 0.83299 -169 CGCCCTGACCCTGATCCTCGGCCTCCCGACGG 25 155 1 CTGTCTCGGC 0.927168 -70 GAGAATGGGTCGCCGCCTCGCCGCGCTCAGGT 25 188 0 CGCGCTCGCC 0.98751 -37 CATCGCTGCGCTCTGCATCGTCGCGGA 26 6 0 CTCGCTCGTC 0.984347 -62 GCGGTACCCCCACCGCATCGCTGCGCTCTGCA 26 21 0 CACGCTCGCT 0.766013 -47 CGATCGAATGCGCCGCTGCGGCACGTCGCCGC 28 103 1 CGCGCGCGGC 0.958341 -198 ATTCGACCGTGTGCTCATCGCCCAGGCACAGC 28 194 1 GTGTCTCGCC 0.929481 -107 ACTCATCTGCGCCGCTCCTCCTC 29 2 1 CTCTCGCGCC 0.996481 -299 TGCGCCGCTCCTCCTCATCGCTTCGCTCTGCA 29 18 1 CTCTCTCGCT 0.984616 -283 CATCGCTTCGCTCTGCATCGTCACCGGCGCGA 29 33 1 CTCGCTCGTC 0.984347 -268 ACCGGCGCGACTCATCTGCGCCGCTCCTGCTC 29 55 1 CTCTCGCGCC 0.996481 -246 TGCGCCGCTCCTGCTCATCGCTTCGCTCTGCA 29 71 1 CTGTCTCGCT 0.932729 -230 CATCGCTTCGCTCTGCATCGTCACCGGCGCGA 29 86 1 CTCGCTCGTC 0.984347 -215 ACCGGCGCGACTCATCTGCGCCGCTCCTGCTC 29 108 1 CTCTCGCGCC 0.996481 -193 TGCGCCGCTCCTGCTCATCGCTTCGCTCTGCA 29 124 1 CTGTCTCGCT 0.932729 -177 CATCGCTTCGCTCTGCATCGTCACCGGCGCGA 29 139 1 CTCGCTCGTC 0.984347 -162 ACCGGCGCGACTCATCTGCGCCGCTCCTGCTC 29 161 1 CTCTCGCGCC 0.996481 -140 TGCGCCGCTCCTGCTCATCGCTTCGCTCTGCA 29 177 1 CTGTCTCGCT 0.932729 -124 CATCGCTTCGCTCTGCATCGTCACCGGCGCGA 29 192 1 CTCGCTCGTC 0.984347 -109 ACCGGCGCGACTCATCTGCGCCGCTCCTCCTC 29 214 1 CTCTCGCGCC 0.996481 -87 TGCGCCGCTCCTCCTCATCGCTTCGCTCTGCA 29 230 1 CTCTCTCGCT 0.984616 -71 CATCGCTTCGCTCTGCATCGTCACCGGCGCGC 29 245 1 CTCGCTCGTC 0.984347 -56 GGCGCGCATGGTCAGCGACGCTACACCGTAGG 29 270 1 GTCGCACGCT 0.6868 -31 *** ** ***** Masking position 6 Map Score: 102.032 Number of sites scoring better than the average of aligned sites = 7446 Number in coding regions = 6894 Number in noncoding regions = 552 Number of orfs with sites within 600 bp upstream = 396 Fraction of orfs with sites within 600 bp upstream = 0.0636042 Motif number 3 AGACCTAACCGGCGGCCCCGAAGCGTAGTGA 2 14 1 GGCGGCCCGA 0.59621 -75 GGCGCTCATCCTGTGCTCCCT 3 32 0 GGCGCTCACC 0.942283 -11 GTGGTCAGCTGTCGGTAATCCAGAACAGCTA 5 187 1 GTCGGTAACC 0.282762 -114 GTTGCCTGCTGGCGCGCGACGGTCGGTGGTC 5 270 1 GGCGCGCGCG 0.965549 -31 ACGGTCGGTGGTCGCGCTAGCGT 5 288 1 GTCGCGCTGC 0.735665 -13 CATCGTCGCCGGCGGTCATGGCGTCACCCTA 6 47 0 GGCGGTCAGG 0.550903 -52 ATGCGCCGCTCCTCCTCATCGCTGC 6 84 0 GCCGCTCCCC 0.993192 -15 GGCCGTTACTCCTTGGACACGG 9 23 0 GCCGTTACCC 0.855883 -12 AGAAGCGTGGGCCTGGCCCCCCAACC 10 6 0 GCCTGGCCCC 0.82176 -295 GTTGCCTCTAGCCTCTCAAGCCGCACCCACA 10 42 1 GCCTCTCAGC 0.483835 -259 GAACCGGATCGTCGCGCCCGCCGCCGCAAGC 10 93 1 GTCGCGCCGC 0.981258 -208 TCTGTTGCTGGGCGCGGCCGCGATCTTCGGA 10 135 1 GGCGCGGCGC 0.915862 -166 ACCGTAGCTAGCCCCGCGACCCGGGCGCCGC 10 254 1 GCCCCGCGCC 0.654134 -47 ATTTGGATCTGCCGTGCCCTCGTAATCTCGA 13 35 1 GCCGTGCCTC 0.448381 -43 GGACCGTATGGCCGGGCCGCGC 14 2 0 GCCGGGCCCG 0.9496 -41 CACGCCGTATGCCGCTACGCAACCATTTCGA 15 24 1 GCCGCTACCA 0.929387 -38 GTAGGTCAACGGCGCTAGGGCGT 16 3 0 GGCGCTAGGC 0.901744 -96 TCAGCCAGTCGGCGTTCCGGCCGAGGCTAGG 16 36 1 GGCGTTCCGC 0.792789 -63 TATCCGCAAGGCCGCTACACCGTCCTGACCG 17 81 1 GCCGCTACCC 0.982485 -121 CAGGGGCCACGTCGCGTCGCGGACAGTCCCA 17 118 1 GTCGCGTCCG 0.39223 -84 TTAGCAGACTGGCTTGCCTCCTGCCGCGACC 17 163 1 GGCTTGCCCC 0.621357 -39 CTGTTAGGGTGCCGGTACGGGACCTAGTCTT 18 62 0 GCCGGTACGG 0.807991 -95 GTATCGCTGCGGCGCGCATCGTCGCCCGGAT 18 123 1 GGCGCGCACG 0.93337 -34 CGCCCGGATAGGCTCGACCGCC 18 145 1 GGCTCGACGC 0.815341 -12 GGTGTTATGGGCCGCTCGGCGCGC 19 4 0 GCCGCTCGCG 0.943011 -204 GAGCAACTCCGGCGCGCGGGTGTTATGGGCC 19 22 0 GGCGCGCGGT 0.695176 -186 GGTCTACGTGACCGCGCCGCCGCCC 21 85 1 ACCGCGCCCC 0.872141 -15 GTGGTAACGTGCCGGGATCCCAAGGGACTGC 22 41 1 GCCGGGATCC 0.601376 -260 CGCTTGGGGCGTCGCGAGAGATTCGGCAATC 22 93 1 GTCGCGAGGA 0.548754 -208 GTGGGGCCAAGCCGTGCACGCCGCAGCGCCT 22 157 0 GCCGTGCAGC 0.772569 -144 TTCTCCATAGGTCGCGCCGGGGACGGGCAGC 23 45 1 GTCGCGCCGG 0.955479 -256 TCGCGCCGGGGACGGGCAGCGGGTCGTGTGC 23 56 1 GACGGGCACG 0.24466 -245 AACACCGTGGGGCGCCACACACGTTTGATCA 23 172 1 GGCGCCACCA 0.749721 -129 ACTCCATCATGCCGCTACCGTCGCCGGCCGC 24 52 0 GCCGCTACGT 0.652198 -22 ACCTTCTGAGGGCGCGACAGGTGGCCGGAGT 25 14 0 GGCGCGACGG 0.967305 -211 GACGCTATCGGCAGCTACACCTTCTGAGGGC 25 32 0 GCAGCTACCC 0.436642 -193 CCGCGCGGACGCCGCGGCACACCGCGACGCT 25 57 0 GCCGCGGCCA 0.822096 -168 CGTCCGCGCGGTCGCTCGTGCCCGACTCGTG 25 77 1 GTCGCTCGGC 0.869756 -148 AGGGCGCCGAGTCGCTCCACGAGTCGGGCAC 25 94 0 GTCGCTCCCG 0.931091 -131 CTCAGGTCCCGTCGGGAGGCCGAGGATCAGG 25 164 0 GTCGGGAGCC 0.62251 -61 ATGGGTCGCCGCCTCGCCGCGCTCAGGTCCC 25 185 0 GCCTCGCCCG 0.888031 -40 CCCGCAAGCGGGCGGTACCCCCACCGCATCG 26 33 0 GGCGGTACCC 0.916015 -35 CGGCGCCGCTCTCCCCCGCAAGCGG 26 53 0 GCCGCTCTCC 0.889381 -15 TCTCTTGTCGGCCGCCAGTGCCTGGGAGATC 28 13 1 GCCGCCAGGC 0.76148 -288 GCAAGCTCCCGCCGCCCGAGCCATCGGCTTC 28 63 1 GCCGCCCGGC 0.895806 -238 TGACAGCGGCGACGTGCCGCAGCGGCGCATT 28 109 0 GACGTGCCCA 0.379119 -192 ACTCATCTGCGCCGCTCCTCCTCATCGCTTC 29 11 1 GCCGCTCCCC 0.993192 -290 CATCGTCACCGGCGCGACTCATCTGCGCCGC 29 48 1 GGCGCGACCA 0.957072 -253 ACTCATCTGCGCCGCTCCTGCTCATCGCTTC 29 64 1 GCCGCTCCGC 0.991069 -237 CATCGTCACCGGCGCGACTCATCTGCGCCGC 29 101 1 GGCGCGACCA 0.957072 -200 ACTCATCTGCGCCGCTCCTGCTCATCGCTTC 29 117 1 GCCGCTCCGC 0.991069 -184 CATCGTCACCGGCGCGACTCATCTGCGCCGC 29 154 1 GGCGCGACCA 0.957072 -147 ACTCATCTGCGCCGCTCCTGCTCATCGCTTC 29 170 1 GCCGCTCCGC 0.991069 -131 CATCGTCACCGGCGCGACTCATCTGCGCCGC 29 207 1 GGCGCGACCA 0.957072 -94 ACTCATCTGCGCCGCTCCTCCTCATCGCTTC 29 223 1 GCCGCTCCCC 0.993192 -78 CATCGTCACCGGCGCGCATGGTCAGCGACGC 29 260 1 GGCGCGCAGG 0.914028 -41 CATGGTCAGCGACGCTACACCGTAGGTTGGA 29 276 1 GACGCTACCC 0.813133 -25 GCTAGTAAAGAGCGCGCCCGAAGAGATTCGA 33 30 1 AGCGCGCCGA 0.530274 -271 AGTCCATGGAGGCGTGCCAGAGCGGCCGAAT 33 210 0 GGCGTGCCGA 0.828807 -91 ******** ** Masking position 3 Map Score: 104.241 Number of sites scoring better than the average of aligned sites = 26972 Number in coding regions = 24862 Number in noncoding regions = 2110 Number of orfs with sites within 600 bp upstream = 1047 Fraction of orfs with sites within 600 bp upstream = 0.168166 Motif number 4 TGCTGATCGTCGGATAGCGCTGGCCAACTCTGGG 1 11 0 CGGGCGCGGC 0.788527 -91 TACGCGATCACCGCCGCTGTGCGGCGAGGAGATC 1 71 1 CCGCTGTCGG 0.760305 -31 TACGCTTCGGGGCCGCCGGTTAGGTCTCGG 2 7 0 GGCCGGTAGG 0.802952 -82 GAAGTCCCATGCCACTGTGCTGGCGCCGGTGACG 5 40 0 GCCGTGCGGC 0.836198 -261 GAACCCGACAGCCACAGCCCTCGTGGCTGCAGGT 5 79 1 GCCGCCCCGT 0.733581 -222 CATCCGTGTCGGGGATCCCCGAGGAATCCCAGGT 5 155 1 GGGCCCCAGG 0.766103 -146 CAGGCAACCGCCCACCGGCCTGGGGGTTTACCAG 5 244 0 CCCGGCCGGG 0.580464 -57 GCCTGCTGGCGCGCGACGGTCGGTGGTCGCGCTA 5 273 1 GCGCGGTGGT 0.585216 -28 TTCTCGTTTCGCGTTCGGCTTGGGTAGGGTGACG 6 23 1 GCGGGCTGGG 0.796697 -76 CGCTGCGCTCGGCATCGTCGCCGGCGGTCATGGC 6 56 0 GGCGTCGCGG 0.732019 -43 CTGGCACACCCTACGGCCCGCTAGGC 7 20 0 GGCCCCTCGG 0.954871 -16 TTGGTGTGAACGCCGTGTCCAAGGAGTAACGGCC 9 11 1 CGCGTCCAGG 0.70643 -24 GGTTGGGGGGCCAGGCCCACGCTTCTGCTAAG 10 9 1 GGCGCCCCGC 0.901003 -292 GCTCCTCGACGGCTGTGGGTGCGGCTTGAGAGGC 10 52 0 GGCGGGTCGG 0.946916 -249 CCGAAGATCGCGGCCGCGCCCAGCAACAGACCAA 10 131 0 CGGCGCCAGC 0.479798 -170 ACAAGAAACCGCCACTCCCCGGGGGCGATCCGTC 10 188 1 GCCCCCCGGG 0.948895 -113 AGCCTGCGGCGCCCGGGTCGCGGGGCTAGCTACG 10 256 0 GCCGTCGGGG 0.655451 -45 CCCGGAGGCCGCCTCAGCCTGCGGCGCCCGGGTC 10 271 0 GCCGCCTCGG 0.927403 -30 GCGCGGCCCGGCCATACGGTCCGGCTGTGACACT 14 11 1 GCCCGGTCGG 0.928279 -32 AACGCCGACTGGCTGAGTGTAGGTCAACGGCGCT 16 18 0 GGCGTGTGGT 0.696309 -81 TCGGCGTTCCGGCCGAGGCTAGGGACCACTCGTA 16 44 1 GGCGGCTGGG 0.959492 -55 CTCATCGAGACCGTATCCGCAAGGCCGCTACACC 17 68 1 CCGCCGCAGG 0.544785 -134 GGCCCTGTTAGGGTGCCGGTACGGGACCTAGTCT 18 63 0 GGGCGGTCGG 0.909353 -94 AGGGCCCCCGGCCAACCTGTTGGTTGGGCAAGGT 18 91 1 GCCCTGTGGT 0.626894 -66 GGTGTTATGGGCCGCTCGGCGCGC 19 1 0 GCCCGGCCGC 0.870475 -207 GCCCTGCTGAGGCAATGCGTTCGGTTACTGATAC 20 115 0 GGCGCGTCGG 0.943846 -98 ACCTCGCCAAGGCTTCCTCCGGGCCCTGCTGAGG 20 137 0 GGCCTCCGGC 0.904348 -76 TTCCAGATACCGCTATGTGTGGGCTGCTGTCCAC 20 169 0 CGCGTGTGGC 0.788323 -44 GGGCGGCGGCGCGGTCACGTAGAC 21 86 0 GGGCGGCCGG 0.923981 -14 ATTCGCTTCCGGCAGTCCCTTGGGATCCCGGCAC 22 49 0 GGCCCCTGGG 0.960127 -252 CGAATCTCTCGCGACGCCCCAAGCGGCGCAACCA 22 84 0 GCGCCCCAGC 0.481711 -217 CGAGAGATTCGGCAATCCCCTGGCTGGAGGATCC 22 107 1 GGCCCCCGGC 0.92808 -194 ACGCCGCAGCGCCTACGCCCTGGCTGAACGGGAT 22 137 0 GCCGCCCGGC 0.504065 -164 TCGAAGAAATGCGGGTGTCTAGGGCACAGAGTAT 22 264 0 GCGGTCTGGG 0.865166 -37 GGACGGGCAGCGGGTCGTGTGCGCGTCTTTCAGT 23 65 1 CGGGTGTCGC 0.653524 -236 AGGGTAGTGACGGTGTCGGTGGGTTGTGGCGTGA 23 200 0 CGGCGGTGGT 0.56589 -101 CCGATATCACGGCCCTGTGCTGGGCTAAGCCAGC 23 259 1 GGCGTGCGGG 0.946737 -42 CGAGCGACCGCGCGGACGCCGCGGCACACCGCGA 25 61 0 CGCCGCCCGG 0.946743 -164 TTCGATTGCGCGCATCGTGGCGGGTTTGAGGGCG 25 119 0 CGCGTGGGGG 0.62663 -106 CCTGATCCTCGGCCTCCCGACGGGACCTGAGCGC 25 164 1 GGCCCGAGGG 0.498296 -61 GAATGGGTCGCCGCCTCGCCGCGCTCAGGTCCCG 25 184 0 CCGCGCCCGC 0.739469 -41 GCAGAGCGCAGCGATGCGGTGGGGGTACCGCCCG 26 22 1 GCGCGGTGGG 0.772943 -46 GGTAGTTGATCGCGATCTCCCAGGCACTGGCGGC 28 23 0 CGCCTCCAGG 0.722021 -278 CACGTAAGAAGCCGATGGCTCGGGCGGCGGGAGC 28 67 0 GCCGGCTGGG 0.915621 -234 ATCGAATGCGCCGCTGCGGCACGTCGCCGCTGTC 28 105 1 CCGCGGCCGT 0.49426 -196 CTCTGCGGTGCGCAGTGTGTGCGTGGTCAACTGA 28 137 0 CGCGTGTCGT 0.557471 -164 GATGGTGATCCGGAAGCTCTGCGGTGCGCAGTGT 28 153 0 CGGCTCTCGG 0.848609 -148 CGCCGACGCGTTGTCTACGCGGCGACAACC 28 281 0 CGCGTCTCGC 0.791745 -20 CACTGCCGTTGCGATAGTCTCCGGCC 30 3 0 GCGGTCTCGG 0.849172 -28 CTAGCGCAAACGCGTTCCGTTGGT 33 1 0 CGCCCGTGGT 0.679839 -300 TCGGGGAGTCCGGGTACTCTCGGGAAGTCCATGG 33 232 0 CGGCTCTGGG 0.864955 -69 CGGCTGTGTACGCTAGGCCTCCGGCGGCTCGGGG 33 260 0 CGCGCCTCGG 0.906979 -41 *** **** *** Masking position 13 Map Score: 83.6492 Number of sites scoring better than the average of aligned sites = 45744 Number in coding regions = 42941 Number in noncoding regions = 2803 Number of orfs with sites within 600 bp upstream = 1151 Fraction of orfs with sites within 600 bp upstream = 0.18487 Motif number 5 GCACAGCGGCGGTGATCGCGTACGTCCAGA 1 63 0 GGTGATCGCG 0.910102 -39 TGTGCGGCGAGGAGATCCGAAACG 1 88 1 GGAGATCCGA 0.58615 -14 CATCCGTGTCGGGGATCCCCGAGGAATCCC 5 155 1 GGGGATCCCC 0.499399 -146 GGGGATCCCCGAGGAATCCCAGGTGGTCAG 5 165 1 GAGGAATCCC 0.558624 -136 CGCGACGGTCGGTGGTCGCGCTAGCGT 5 284 1 GGTGGTCGCG 0.437617 -17 CAGCGATGAGGAGGAGCGGCGCAT 6 85 1 GAGGAGCGGC 0.918239 -14 AGGAGCCACCGATGAACCGGATCGTCGCGC 10 80 1 GATGAACCGG 0.820241 -221 GGGTCACTCCGAAGATCGCGGCCGCGCCCA 10 143 0 GAAGATCGCG 0.907258 -158 CGGTGATTGGGTCTGATGAAG 19 197 0 GGTGATTGGG 0.649602 -11 GACCGGCAAAGAGGAGCCGCC 21 2 0 GAGGAGCCGC 0.928883 -98 CTAACATGAACATCGCGAGGCCGGTTC 22 8 1 GAACATCGCG 0.307718 -293 ACGTTACCACGAAGAACCGGCCTCGCGATG 22 21 0 GAAGAACCGG 0.898576 -280 GGCAGTCCCTTGGGATCCCGGCACGTTACC 22 43 0 TGGGATCCCG 0.566757 -258 CCTCCAGCCAGGGGATTGCCGAATCTCTCG 22 107 0 GGGGATTGCC 0.775707 -194 CCCCTGGCTGGAGGATCCCGTTCAGCCAGG 22 123 1 GAGGATCCCG 0.95347 -178 ACCTGAACAAGAAGAACCCGGCATTCGTCG 22 204 1 GAAGAACCCG 0.876691 -97 CGCGACCTATGGAGAACCGGAAGCTGTACA 23 31 0 GGAGAACCGG 0.946911 -270 GCGTCTGCAAGGAGAACCGC 23 291 1 GGAGAACCGC 0.91799 -10 TCGGGAGGCCGAGGATCAGGGTCAGGGCGT 25 154 0 GAGGATCAGG 0.607669 -71 CCACCGTACGGGAGAATGGGTCGCCGCCTC 25 201 0 GGAGAATGGG 0.692058 -24 CGATGCGGTGGGGGTACCGCCCGCTTGCGG 26 33 1 GGGGTACCGC 0.522752 -35 CGCTTGCGGGGGAGAGCGGCGCCG 26 54 1 GGAGAGCGGC 0.92139 -14 CCAGTGCCTGGGAGATCGCGATCAACTACC 28 27 1 GGAGATCGCG 0.95164 -274 GGATGTCGATGGTGATCCGGAAGCTCTGCG 28 164 0 GGTGATCCGG 0.936229 -137 AAGCGATGAGGAGGAGCGGCGCAGATGAGT 29 11 0 GAGGAGCGGC 0.918239 -290 AAGCGATGAGGAGGAGCGGCGCAGATGAGT 29 223 0 GAGGAGCGGC 0.918239 -78 CCGGCGGCTCGGGGAGTCCGGGTACTCTCG 33 244 0 GGGGAGTCCG 0.831125 -57 ********** Masking position 1 Map Score: 30.2802 Number of sites scoring better than the average of aligned sites = 7472 Number in coding regions = 6873 Number in noncoding regions = 599 Number of orfs with sites within 600 bp upstream = 459 Fraction of orfs with sites within 600 bp upstream = 0.0737231 Motif number 6 CAGGTCTGGACGTACGCGATCACCGCCGCTG 1 59 1 CGACGCGATC 0.760202 -43 TCGGGGATCCCCGACACGGATGAGGGTGATA 5 146 0 CCACACGGAT 0.597257 -155 TAATGGAACACGTTCTCGTTTCGCG 6 5 1 GGACACGTTC 0.957632 -94 AGCTAGCCCCGCGACCCGGGCGCCGCAGGCT 10 259 1 GCACCCGGGC 0.767363 -42 GATCCAAATTGCAACACGTTCTAGTCTTGCC 13 13 0 GCACACGTTC 0.973264 -65 GCGCGGCCCGGCCATACGGTCCGGCTGTGAC 14 11 1 GCATACGGTC 0.922793 -32 CAGCAGAGTTCGCACGCCGTATGCCGCTACG 15 12 1 CGACGCCGTA 0.710946 -50 AGCCTCGGCCGGAACGCCGACTGGCTGAGTG 16 33 0 GGACGCCGAC 0.802125 -66 AGCGGCCTTGCGGATACGGTCTCGATGAGGC 17 66 0 CGATACGGTC 0.859056 -136 CCGCAAGGCCGCTACACCGTCCTGACCGATG 17 84 1 GCACACCGTC 0.981917 -118 ACCTAGAGGCCCCACCCGTTCGATCACAAGA 19 75 0 CCACCCGTTC 0.89667 -133 CATGCGTCGGCGTACACGGTCAATATGCACC 20 51 0 CGACACGGTC 0.98203 -162 CCCTGCTGAGGCAATGCGTTCGGTTACTGAT 20 117 0 GCATGCGTTC 0.794617 -96 GGGCGGCGGCGCGGTCACGTAGACCA 21 84 0 GCGCGCGGTC 0.90709 -16 GTGCGAAACGCCGACACCGTTGAACTCCACC 23 104 1 CCACACCGTT 0.85624 -197 CCACAACCCACCGACACCGTCACTACCCTCA 23 205 1 CCACACCGTC 0.978068 -96 GCTATCGGCAGCTACACCTTCTGAGGGCGCG 25 29 0 GCACACCTTC 0.948572 -196 CTGGGCGATGAGCACACGGTCGAATGGATGT 28 188 0 AGACACGGTC 0.826827 -113 CGCCGACGCGTTGTCTACGCGGC 28 288 0 CCACGCGTTG 0.690587 -13 GGTCAGCGACGCTACACCGTAGGTTGGACAC 29 279 1 GCACACCGTA 0.835016 -22 ACCAACGGAACGCGTTTGCGCTAGTAA 33 7 1 GGACGCGTTT 0.742054 -294 ** ******** Masking position 7 Map Score: 16.4064 Number of sites scoring better than the average of aligned sites = 5961 Number in coding regions = 5573 Number in noncoding regions = 388 Number of orfs with sites within 600 bp upstream = 330 Fraction of orfs with sites within 600 bp upstream = 0.0530035 Motif number 7 TAACCGGCGGCCCCGAAGCGTAGTGATGTG 2 19 1 CCCCGAAGCG 0.976089 -70 TATAAGGTCAGTCGGATGCGCTCG 4 5 0 GTCGGATGCG 0.457322 -90 CCTCGGGGATCCCCGACACGGATGAGGGTG 5 149 0 CCCCGACACG 0.733471 -152 GGTCGGTGGTCGCGCTAGCGT 5 290 1 CGCGCTAGCG 0.67027 -11 CCCTACCCAAGCCGAACGCGAAACGAGAAC 6 22 0 GCCGAACGCG 0.743098 -77 ACGGGCCGATTAGCTCCCGACGA 8 4 1 GGCCGATTAG 0.487066 -22 TGGGGGGCCAGGCCCACGCTTCTGCTAAGT 10 14 1 GGCCCACGCT 0.412452 -287 CGCTTGCGGCGGCGGGCGCGACGATCCGGT 10 95 0 GGCGGGCGCG 0.839676 -206 CGCGCCCGCCGCCGCAAGCGTGGTGGTTGG 10 105 1 GCCGCAAGCG 0.912216 -196 TGTTGCTGGGCGCGGCCGCGATCTTCGGAG 10 137 1 CGCGGCCGCG 0.494036 -164 GGAAGGTCACCCCAATTCGTAGCACTCAA 12 90 0 CCCCAATTCG 0.430096 -19 GGGCTCCAAGCGTAGTGATCCT 13 66 0 GCTCCAAGCG 0.270915 -12 ACGCCCTAGCGCCGTTGACCT 16 2 1 CGCCCTAGCG 0.777465 -97 ATGGGACTGTCCGCGACGCGACGTGGCCCC 17 120 0 CCGCGACGCG 0.644819 -82 CGACGATGCGCGCCGCAGCGATACCTTGCC 18 117 0 CGCCGCAGCG 0.89575 -40 CCTATCCGGGCGACGATGCGCGCCGCAGCG 18 127 0 CGACGATGCG 0.539796 -30 GCTCAACATTGGCCGGTTCGTTACCGTCTT 19 49 1 GGCCGGTTCG 0.539019 -159 AAACCTAGAGGCCCCACCCGTTCGATCACA 19 78 0 GCCCCACCCG 0.493727 -130 TCGACCACTTGGCACATGCGTCGGCGTACA 20 66 0 GGCACATGCG 0.852528 -147 CCAAGGGACTGCCGGAAGCGAATTTGGTTG 22 60 1 GCCGGAAGCG 0.948106 -241 CTCTCGCGACGCCCCAAGCGGCGCAACCAA 22 83 0 GCCCCAAGCG 0.945089 -218 AAGCCGTGCACGCCGCAGCGCCTACGCCCT 22 150 0 CGCCGCAGCG 0.89575 -151 CGCTGCCCGTCCCCGGCGCGACCTATGGAG 23 47 0 CCCCGGCGCG 0.901806 -254 CACTGAAAGACGCGCACACGACCCGCTGCC 23 70 0 CGCGCACACG 0.574301 -231 CAAATCGTTACGCAGAAGCGGTATACCGAT 23 234 1 CGCAGAAGCG 0.935858 -67 AGGTGTAGCTGCCGATAGCGTCGCGGTGTG 25 41 1 GCCGATAGCG 0.180338 -184 GGTCGCTCGTGCCCGACTCGTGGAGCGACT 25 86 1 GCCCGACTCG 0.880074 -139 GGTTTGAGGGCGCCGAGTCGCTCCACGAGT 25 101 0 CGCCGAGTCG 0.580452 -124 CGCCACGATGCGCGCAATCGAAAACGCCCT 25 131 1 CGCGCAATCG 0.777941 -94 GCCGCTCTCCCCCGCAAGCGGGCGGTACCC 26 44 0 CCCGCAAGCG 0.933411 -24 GTGCCGCAGCGGCGCATTCGATCGGGCACG 28 97 0 GGCGCATTCG 0.707229 -204 CGCCGACGCGTTGTCTACGC 28 291 0 CGCCGACGCG 0.981484 -10 GGAGGAGCGGCGCAGATGAGT 29 2 0 CGCAGATGAG 0.648953 -299 GCAGGAGCGGCGCAGATGAGTCGCGCCGGT 29 55 0 CGCAGATGAG 0.648953 -246 GCAGGAGCGGCGCAGATGAGTCGCGCCGGT 29 108 0 CGCAGATGAG 0.648953 -193 GCAGGAGCGGCGCAGATGAGTCGCGCCGGT 29 161 0 CGCAGATGAG 0.648953 -140 GGAGGAGCGGCGCAGATGAGTCGCGCCGGT 29 214 0 CGCAGATGAG 0.648953 -87 TCTTTACTAGCGCAAACGCGTTCCGTTGGT 33 11 0 CGCAAACGCG 0.681552 -290 TAAAGAGCGCGCCCGAAGAGATTCGAACTC 33 35 1 GCCCGAAGAG 0.803337 -266 TTAGCAGTGAGCCCCATTCGGCCGCTCTGG 33 195 1 GCCCCATTCG 0.736376 -106 ********** Masking position 10 Map Score: 42.1353 Number of sites scoring better than the average of aligned sites = 22781 Number in coding regions = 21105 Number in noncoding regions = 1676 Number of orfs with sites within 600 bp upstream = 953 Fraction of orfs with sites within 600 bp upstream = 0.153068 Motif number 8 CATCACTACGCTTCGGGGCCGCCGGTTAGGTC 2 15 0 CTTCGGGCCC 0.732974 -74 TCCTGTGCTCCCTCTGGTTCTCGTGATGCCGG 3 13 0 CCTCTGGTCC 0.887049 -30 CGAGCGCATCCGACTGACCTTATATATC 4 7 1 CATCCGATGC 0.78461 -88 ATTGCTGGTTCAACCGGGTGACTAGGATCGCG 4 63 1 CAACCGGTGC 0.932349 -32 GCTAGCGCGACCACCGACCGTCGCGCGCCAGC 5 277 0 CCACCGACGC 0.770998 -24 CTGGCACACCCTACGGCCCGCTAGGCTATCG 7 15 0 CCTACGGCCC 0.91001 -21 CCTGCTGCACCATCAGGGTCACTCCGAAGATC 10 156 0 CATCAGGTCC 0.85354 -145 CATCAGTGCTCAACCGGGTCGAGTACGGTAAC 10 224 1 CAACCGGTCA 0.582382 -77 CAGCCTGCGGCGCCCGGGTCGCGGGGCTAGCT 10 259 0 CGCCCGGTCC 0.74945 -42 GCTGAGGCGGCCTCCGGGTCGCAG 10 287 1 CCTCCGGTCC 0.993725 -14 GCTCCCAACTTCTCCGACTCTCATCATCGATT 17 16 1 TCTCCGATCC 0.606994 -186 CTTGCCCAACCAACAGGTTGGCCGGGGGCCCT 18 91 0 CAACAGGTGC 0.546529 -66 CGGTCGAGCCTATCCGGGCGACGATGCGCGCC 18 133 0 TATCCGGCGC 0.649906 -24 GCCAAGGCTTCCTCCGGGCCCTGCTGAGGCAA 20 134 0 CCTCCGGCCT 0.851516 -79 ACCAAATTCGCTTCCGGCAGTCCCTTGGGATC 22 56 0 CTTCCGGAGC 0.78841 -245 ACTTGTACAGCTTCCGGTTCTCCATAGGTCGC 23 28 1 CTTCCGGTCC 0.978503 -273 GGCGGTACCCCCACCGCATCGCTGCGCTCTGC 26 22 0 CCACCGCTCC 0.846582 -46 CACCGCAGAGCTTCCGGATCACCATCGACATC 28 161 1 CTTCCGGTCC 0.978503 -140 ACCAACGGAACGCGTTTGCGCTA 33 2 1 CCAACGGACC 0.523019 -299 AGGATTTGAACCTCCGGTCCCCTTGAAGGGGG 33 155 1 CCTCCGGCCC 0.992362 -146 ******* ** * Masking position 6 Map Score: 17.8925 Number of sites scoring better than the average of aligned sites = 3783 Number in coding regions = 3502 Number in noncoding regions = 281 Number of orfs with sites within 600 bp upstream = 231 Fraction of orfs with sites within 600 bp upstream = 0.0371025 Motif number 9 TGGACGTACGCGATCACCGCCGCTGTGCGGCGA 1 65 1 CGATAGCCGC 0.595088 -37 CAATTCGTCGCCGCAGGTGCAGCGGTAGGCGTC 5 11 1 CCGCGGCAGC 0.908463 -290 GATGCGAACCCGACAGCCACAGCCCTCGTGGCT 5 74 1 CGACGACAGC 0.883141 -227 GCCTCTCAAGCCGCACCCACAGCCGTCGAGGAG 10 52 1 CCGCCACAGC 0.500858 -249 CGGATCGTCGCGCCCGCCGCCGCAAGCGTGGTG 10 97 1 CGCCGGCCGC 0.967803 -204 GACATCTGTGCGACTTTCGCCGCGAGAAAGGCT 12 29 0 CGACTGCCGC 0.980762 -80 ATACGGCGTGCGAACTCTGCTGC 15 1 0 CGAATGCTGC 0.780376 -61 AGAGTTCGCACGCCGTATGCCGCTACGCAACCA 15 16 1 CGCCTGCCGC 0.976631 -46 CGCTACGCAACCATTTCGACAGCCGGCGCTGAC 15 36 1 CCATTACAGC 0.735325 -26 GCGGACAGTCCCATGTTAGCTGCATGTTTAGCA 17 136 1 CCATTGCTGC 0.867927 -66 ATCCGGGCGACGATGCGCGCCGCAGCGATACCT 18 121 0 CGATCGCCGC 0.800347 -36 CAACACTCAACCACCTACACAGCGAACAAAAAG 19 124 0 CCACTACAGC 0.885587 -84 GCTATATCCCCGACCTCGGCAACACTCAACCAC 19 143 0 CGACTGCAAC 0.502218 -65 ATCCGGCTTGCCGTCTATGCTGCCCGG 20 5 0 CCGTTGCTGC 0.795447 -208 GAAGCCTTGGCGAGGTGGACAGCAGCCCACACA 20 155 1 CGAGTACAGC 0.46841 -58 GGTCAGATATCGACTTGAGCTGCTCTGGGAGAA 21 51 1 CGACTGCTGC 0.96132 -49 GTGCCGGGATCCCAAGGGACTGCCGGAAGCGAA 22 49 1 CCCAGACTGC 0.338765 -252 GTAGGCGCTGCGGCGTGCACGGCTTGGCCCCAC 22 155 1 CGGCTACGGC 0.564585 -146 TCGTGGTTGGCGACTTGTACAGCTTCCGGTTCT 23 16 1 CGACTACAGC 0.913097 -285 ACGCCACAACCCACCGACACCGTCACTACCCTC 23 202 1 CCACGACCGT 0.34417 -99 CCGCTACCGTCGCCGGCCGCCGCAGTCACACTC 24 39 0 CGCCGGCCGC 0.967803 -35 CACACCGCGACGCTATCGGCAGCTACACCTTCT 25 38 0 CGCTTGCAGC 0.903042 -187 ACCGCCGACGCCCTGTTAGCTGCCTGTGATGTC 28 246 1 CCCTTGCTGC 0.843438 -55 TGTGATGTCGCGGTTGTCGCCGCGTAGACAACG 28 270 1 CGGTGGCCGC 0.886208 -31 AGCAGTGAGCCCCATTCGGCCGCTCTGGCACGC 33 197 1 CCCATGCCGC 0.814866 -104 TACACAGCCGCCACATATGCTGTCGAC 33 284 1 CCACTGCTGT 0.517278 -17 **** * ***** Masking position 10 Map Score: 31.3028 Number of sites scoring better than the average of aligned sites = 17166 Number in coding regions = 16314 Number in noncoding regions = 852 Number of orfs with sites within 600 bp upstream = 551 Fraction of orfs with sites within 600 bp upstream = 0.0884998 Motif number 10 TCCGGATATATGGCTGGATCTTTTCTATTG 4 37 1 TGGCTGGATC 0.925258 -58 ATCTTTTCTATTGCTGGTTCAACCGGGTGA 4 54 1 TTGCTGGTTC 0.811966 -41 GGGCTGTGGCTGTCGGGTTCGCATCGAAGT 5 69 0 TGTCGGGTTC 0.922309 -232 CCCCGGGGAGTGGCGGTTTCTTGTCCTGCT 10 182 0 TGGCGGTTTC 0.906974 -119 CCGGACCGTATGGCCGGGCCGCGC 14 5 0 TGGCCGGGCC 0.88151 -38 TGCTCAACATTGGCCGGTTCGTTACCGTCT 19 48 1 TGGCCGGTTC 0.989245 -160 CGGCTCCTCTTTGCCGGTCCTTTCTACTGC 21 13 1 TTGCCGGTCC 0.815803 -87 GAACATCGCGAGGCCGGTTCTTCGTGGTAA 22 18 1 AGGCCGGTTC 0.914188 -283 CGTGGTAACGTGCCGGGATCCCAAGGGACT 22 40 1 TGCCGGGATC 0.928046 -261 TCTCGACGAATGCCGGGTTCTTCTTGTTCA 22 207 0 TGCCGGGTTC 0.970043 -94 CGGTGGGTTGTGGCGTGATCAAACGTGTGT 23 188 0 TGGCGTGATC 0.795227 -113 GCGCGCATCGTGGCGGGTTTGAGGGCGCCG 25 116 0 TGGCGGGTTT 0.906974 -109 ********** Masking position 4 Map Score: 12.3448 Number of sites scoring better than the average of aligned sites = 1282 Number in coding regions = 1186 Number in noncoding regions = 96 Number of orfs with sites within 600 bp upstream = 100 Fraction of orfs with sites within 600 bp upstream = 0.0160617 Motif number 11 CGCAGGTGCAGCGGTAGGCGTCACCGGCGCCA 5 22 1 GCGGTAGGGC 0.988443 -279 AGGCCGGTGGGCGGTTGCCTGCTGGCGCGCGA 5 257 1 GCGGTTGCTC 0.914676 -44 CACCACGCTTGCGGCGGCGGGCGCGACGATCC 10 98 0 GCGGCGGCGC 0.850514 -203 AAGGATCACTACGCTTGGAGCCC 13 65 1 ACGCTTGGGC 0.573322 -13 TCGGATGGTCGCGGCAGGAGGCAAGCCAGTCT 17 168 0 GCGGCAGGGC 0.987308 -34 TTGTGATCGAACGGGTGGGGCCTCTAGGTTTC 19 77 1 ACGGGTGGGC 0.845964 -131 CAATCCCCTGGCTGGAGGATCCCGTTCAGCCA 22 119 1 GCTGGAGGTC 0.540117 -182 GTATCGGCCTGCGATTGGTGACCAAAGGCATT 22 236 0 GCGATTGGGC 0.948807 -65 GTGGGTCGTGGTTGGCGACTTGTACAGCT 23 8 1 GTGGTTGGGC 0.799789 -293 TGTGACTGCGGCGGCCGGCGACGGTAGCGGCA 24 42 1 GCGGCCGGGC 0.947698 -32 TTCTGAGGGCGCGACAGGTGGCCGGAGTGGG 25 10 0 GCGACAGGGC 0.943994 -215 GCTTGCCGAGGCGGTAGTTGATCGCGATCTCC 28 37 0 GCGGTAGTGT 0.704906 -264 GGCTCGGGCGGCGGGAGCTTGCCGAGGCGGTA 28 53 0 GCGGGAGCTC 0.88728 -248 CTGTGATGTCGCGGTTGTCGCCGCGTAGACAA 28 269 1 GCGGTTGTGC 0.964684 -32 CACTGCCGTTGCGATAGTCTCCGGCC 30 5 0 GCGATAGTTC 0.703269 -26 TGAGCTACGGGCGCTTGTCTTCAGTTGTGTCC 33 101 1 GCGCTTGTTC 0.662716 -200 GACTGCGGAGGCGAGAGGATTTGAACCTCCGG 33 140 1 GCGAGAGGTT 0.322729 -161 AGCATATGTGGCGGCTGTGTACGCTAGGCCTC 33 273 0 GCGGCTGTTC 0.908656 -28 ******** * * Masking position 7 Map Score: 15.8795 Number of sites scoring better than the average of aligned sites = 7670 Number in coding regions = 7189 Number in noncoding regions = 481 Number of orfs with sites within 600 bp upstream = 411 Fraction of orfs with sites within 600 bp upstream = 0.0660135 Motif number 12 CGCGTACGTCCAGACCTGGGCCATGGTTGCG 1 46 0 CGACCTGGGC 0.928254 -56 GGTAAACCCCCAGGCCGGTGGGCGGTTGCCT 5 246 1 CGGCCGGTGG 0.920423 -55 AGCGCGACCACCGACCGTCGCGCGCCAGCAG 5 275 0 CGACCGTCGC 0.755756 -26 CCGGGCGCCGCAGGCTGAGGCGGCCTCCGGG 10 274 1 CGGCTGAGGC 0.957079 -27 AGTCGGCGTTCCGGCCGAGGCTAGGGACCAC 16 42 1 CGGCCGAGGC 0.995208 -57 CTACACCGTCCTGACCGATGCACCAGGGGCC 17 95 1 CGACCGATGC 0.966925 -107 AACCAACAGGTTGGCCGGGGGCCCTGTTAGG 18 85 0 TGGCCGGGGG 0.63327 -72 CGCTATATCCCCGACCTCGGCAACACTCAAC 19 146 0 CGACCTCGGC 0.845187 -62 TCCTCCGGGCCCTGCTGAGGCAATGCGTTCG 20 126 0 CTGCTGAGGC 0.689907 -87 AAGTCGATATCTGACCGGTACAGTGCAGTAG 21 36 0 CGACCGGTAC 0.761768 -64 TCACCAATCGCAGGCCGATACTCTGTGCCCT 22 247 1 CGGCCGATAC 0.887599 -54 ACCGATATCACGGCCCTGTGCTGGGCTAAGC 23 258 1 CGCCCTGTGC 0.817884 -43 GCTACCGTCGCCGGCCGCCGCAGTCACACTC 24 39 0 CGGCCGCCGC 0.951615 -35 GCGGCGGGAGCTTGCCGAGGCGGTAGTTGAT 28 47 0 CTGCCGAGGC 0.953975 -254 CAAGCTCCCGCCGCCCGAGCCATCGGCTTCT 28 64 1 CGCCCGAGCC 0.879516 -237 ACTCCCCGAGCCGCCGGAGGCCTAGCGTACA 33 257 1 CGCCGGAGGC 0.879492 -44 * ********* Masking position 5 Map Score: 14.5102 Number of sites scoring better than the average of aligned sites = 8849 Number in coding regions = 8313 Number in noncoding regions = 536 Number of orfs with sites within 600 bp upstream = 423 Fraction of orfs with sites within 600 bp upstream = 0.0679409 Motif number 13 CGTCCAGACCTGGGCCATGGTTGCGCTGCT 1 41 0 TGGGCCATGG 0.726542 -61 ACGATTTGTGTGGCACATCACTACGCTTCG 2 32 0 TGGCACATCA 0.652304 -57 CTGGCACACCCTACGGCCCGC 7 25 0 TGGCACACCC 0.6983 -11 AGCGTGGGCCTGGCCCCCCAACC 10 4 0 TGGCCCCCCA 0.95172 -297 GGTTCATCGGTGGCTCCTCGACGGCTGTGG 10 68 0 TGGCTCCTCG 0.824866 -233 TGACGACGGATCGCCCCCGGGGAGTGGCGG 10 196 0 TCGCCCCCGG 0.709316 -105 CTGCGACCCGGAGGCCGCCTC 10 290 0 TGCGACCCGG 0.567188 -11 TCACGATTTGGCACCTGACAGCAAATTC 11 9 1 TGGCACCTGA 0.936466 -22 CGACGCGACGTGGCCCCTGGTGCATCGGTC 17 107 0 TGGCCCCTGG 0.97662 -95 CAGACTGGCTTGCCTCCTGCCGCGACCATC 17 167 1 TGCCTCCTGC 0.559075 -35 CACCCTAACAGGGCCCCCGGCCAACCTGTT 18 82 1 GGGCCCCCGG 0.825487 -75 CGAAACCTAGAGGCCCCACCCGTTCGATCA 19 80 0 AGGCCCCACC 0.34823 -128 AAAAGCAAAATGGGCCCTCCGAAACCTAGA 19 99 0 TGGGCCCTCC 0.917898 -109 GTCGACCACTTGGCACATGCGTCGGCGTAC 20 67 0 TGGCACATGC 0.779805 -146 AGGCTTCCTCCGGGCCCTGCTGAGGCAATG 20 132 0 CGGGCCCTGC 0.780971 -81 GTGCACGGCTTGGCCCCACAACCCGTATTG 22 169 1 TGGCCCCACA 0.818824 -132 CCCGTATTGATGCCACCTGAACAAGAAGAA 22 190 1 TGCCACCTGA 0.743867 -111 CAAACGTGTGTGGCGCCCCACGGTGTTTTC 23 169 0 TGGCGCCCCA 0.710808 -132 GGCCTCCCGACGGGACCTGAGCGCGGCGAG 25 174 1 CGGGACCTGA 0.557163 -51 ********** Masking position 6 Map Score: 9.81376 Number of sites scoring better than the average of aligned sites = 4281 Number in coding regions = 3908 Number in noncoding regions = 373 Number of orfs with sites within 600 bp upstream = 317 Fraction of orfs with sites within 600 bp upstream = 0.0509155 Motif number 14 TAGCTGTTCTGGATTACCGACAGCTGACCA 5 188 0 GGATTACCGA 0.518195 -113 CCGCCCACCGGCCTGGGGGTTTACCAGATA 5 241 0 GCCTGGGGGT 0.416895 -60 CGGTGTAGCGGCCTTGCGGATACGGTCTCG 17 73 0 GCCTTGCGGA 0.928445 -129 ATAGCAATCCGGCTTGCCGTCTATGCTGCC 20 14 0 GGCTTGCCGT 0.926677 -199 CTTCCTCCGGGCCCTGCTGAGGCAATGCGT 20 129 0 GCCCTGCTGA 0.763176 -84 CCCGGAGGAAGCCTTGGCGAGGTGGACAGC 20 148 1 GCCTTGGCGA 0.949861 -65 ACGAAGAACCGGCCTCGCGATGTTCATGTT 22 13 0 GGCCTCGCGA 0.814968 -288 GGATCCCAAGGGACTGCCGGAAGCGAATTT 22 55 1 GGACTGCCGG 0.876235 -246 TCCAGCCAGGGGATTGCCGAATCTCTCGCG 22 105 0 GGATTGCCGA 0.953157 -196 GCAATCCCCTGGCTGGAGGATCCCGTTCAG 22 118 1 GGCTGGAGGA 0.493877 -183 CACTCAATTTGCATGGCCGACAACAGTTTG 24 14 0 GCATGGCCGA 0.886529 -60 CCTGATCCTCGGCCTCCCGACGGGACCTGA 25 164 1 GGCCTCCCGA 0.904729 -61 GATCTCCCAGGCACTGGCGGCCGACAAGAG 28 14 0 GCACTGGCGG 0.725214 -287 GGGCGGCGGGAGCTTGCCGAGGCGGTAGTT 28 50 0 AGCTTGCCGA 0.703589 -251 AAGCAGCTGTGCCTGGGCGATGAGCACACG 28 201 0 GCCTGGGCGA 0.900501 -100 ACAGCTGCTTGGCCTGACGATCATCACCGC 28 221 1 GGCCTGACGA 0.892863 -80 GCGGCACTGCCGTTGCGATAGTC 30 18 0 GCACTGCCGT 0.840541 -13 GTCCCCTAAAGGACTGCGGAGGCGAGAGGA 33 129 1 GGACTGCGGA 0.893363 -172 ********** Masking position 9 Map Score: 15.8838 Number of sites scoring better than the average of aligned sites = 6835 Number in coding regions = 6354 Number in noncoding regions = 481 Number of orfs with sites within 600 bp upstream = 382 Fraction of orfs with sites within 600 bp upstream = 0.0613556 Motif number 15 CCGAGACCTAACCGGCGGCCCCGAAG 2 7 1 CCTAACCGGC 0.949912 -82 GTATAGGTTACCTAACTTACTTAGGTAGCA 2 60 1 CCTAACTTAC 0.864568 -29 CTGGGACCTTGCTGACCTGCAGCCACGAGG 5 97 0 GCTGACCTGC 0.949777 -204 CCACGCTTCTGCTAAGTTGCCTCTAGCCTC 10 27 1 GCTAAGTTGC 0.729859 -274 GAAAGGCTGTCCTAACCTACCGGTCG 12 7 0 CCTAACCTAC 0.96541 -102 GGAACCCCTGCATAACCTGCTCATCCTGAC 12 59 0 CATAACCTGC 0.888561 -50 CGCAAACCTGCTTTCATCGTT 16 88 0 GCAAACCTGC 0.926805 -11 GCCCTGTAGGCTAACCTACCAAGCACTTG 32 10 1 GCTAACCTAC 0.96541 -38 ********** Masking position 5 Map Score: 2.45235 Number of sites scoring better than the average of aligned sites = 344 Number in coding regions = 293 Number in noncoding regions = 51 Number of orfs with sites within 600 bp upstream = 60 Fraction of orfs with sites within 600 bp upstream = 0.00963701