AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00410_mtub_reg_100.orf -o00410_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: fadE21 25 fadE21 Input sequences: #1 gca 281 gca #2 gmhA 73 gmhA #3 fadE1 41 fadE1 #4 Rv0132c 86 hypothetical protein Rv0132c #5 Rv0144 101 hypothetical protein Rv0144 #6 Rv0145 88 hypothetical protein Rv0145 #7 Rv0146 42 hypothetical protein Rv0146 #8 Rv0147 94 hypothetical protein Rv0147 #9 fadE2 300 fadE2 #10 fadE3 56 fadE3 #11 Rv0218 92 hypothetical protein Rv0218 #12 Rv0221 43 hypothetical protein Rv0221 #13 echA1 30 echA1 #14 Rv0223c 98 hypothetical protein Rv0223c #15 Rv0224c 35 hypothetical protein Rv0224c #16 fadE4 94 fadE4 #17 fadE6 113 fadE6 #18 end 194 end #19 lpqP 31 lpqP #20 fadE8 59 fadE8 #21 mmsA 205 mmsA #22 fadA 156 fadA #23 fadE10 260 fadE10 #24 echA6 26 echA6 #25 Rv0976c 197 hypothetical protein Rv0976c #26 echA9 186 echA9 #27 Rv1344 44 hypothetical protein Rv1344 #28 echA13 224 echA13 #29 echA14 300 echA14 #30 scoA 82 scoA #31 fadD35 115 fadD35 #32 gabT 166 gabT #33 Rv2597 216 hypothetical protein Rv2597 #34 Rv2600 81 hypothetical protein Rv2600 #35 echA15 52 echA15 #36 fadE20 135 fadE20 #37 ltp1 32 ltp1 #38 Rv2792c 201 hypothetical protein Rv2792c #39 echA16 46 echA16 #40 serB2 37 serB2 #41 ctaD 214 ctaD #42 Rv3137 300 hypothetical protein Rv3137 #43 fadE24 79 fadE24 #44 fadE25 24 fadE25 #45 lat 50 lat #46 Rv3291c_Rv3292 30 Rv3291c: hypothetical protein Rv3291c, Rv3292: hypothetical protein Rv3292 #47 aldB 26 aldB #48 echA18 236 echA18 #49 gadB 37 gadB #50 Rv3435c 221 hypothetical protein Rv3435c #51 fadE26 214 fadE26 #52 fadE27 24 fadE27 #53 echA19 73 echA19 #54 Rv3545c 111 hypothetical protein Rv3545c #55 echA20 54 echA20 #56 fadE30_fadD3 47 fadE30: fadE30, fadD3: fadD3 #57 fadE34 271 fadE34 #58 Rv3603c 184 hypothetical protein Rv3603c #59 Rv3789 108 hypothetical protein Rv3789 #60 Rv3790 39 hypothetical protein Rv3790 #61 embA 85 embA #62 atsH 67 atsH #63 fadE35 79 fadE35 Motif number 1 TCCGCCGTGTGCTCCGGATGA 1 2 1 CCGCCGTGTG 0.851887 -280 ACCGTTTGACGAGCCGCGGCCTCGCTGCAA 1 105 1 GAGCCGCGGC 0.984406 -177 CTAACCGGTGGCGCCGACGGTGAGTCAGGA 4 20 1 GCGCCGACGG 0.587354 -67 CGAAGGTGTGCTGCAGCGCGACGCGGGTAG 4 58 1 CTGCAGCGCG 0.877991 -29 GACGCGGGTAGTGCAGCCCG 4 77 1 GTGCAGCCCG 0.716619 -10 TCTCCTCGCCGCACAGCGGCGGTGATCGCG 5 73 0 GCACAGCGGC 0.921784 -29 CTACGCTTCGGGGCCGCCGGTTAGGTCTCG 6 12 0 GGGCCGCCGG 0.945786 -77 ATTGCTGGTTCAACCGGGTGACTAGGATCG 8 63 1 CAACCGGGTG 0.577132 -32 GACCCGCAAGTGGCAGCGCGAGCTCGACTA 9 163 0 TGGCAGCGCG 0.938419 -138 GCCACGATATCTACCGGCGCTAGCAGACGC 9 266 0 CTACCGGCGC 0.586823 -35 GCAGGCTATCGGACAGGGGGTCAATACGGA 10 25 1 GGACAGGGGG 0.848424 -32 AGGCGAAATTGCGCCGACGCATACTGGACC 11 12 0 GCGCCGACGC 0.568128 -81 AGCCATCGCTGTACCGAGGCGAAATTGCGC 11 28 0 GTACCGAGGC 0.592608 -65 GTTCGACTAACCGCAGCCTGCCAAAGCCAT 11 52 0 CCGCAGCCTG 0.717358 -41 CTCGGCATCGTCGCCGGCGGTCATGGCGTC 14 53 0 TCGCCGGCGG 0.853951 -46 ATGCGCCGCTCCTCCTCATCGC 14 87 0 GCGCCGCTCC 0.856873 -12 TGACGCTACTGCACTGCGGCCCCGCAAGAC 16 37 0 GCACTGCGGC 0.528276 -58 CGTTTCCCCGGAGCAGCGCGTAGTCAGCGC 18 46 0 GAGCAGCGCG 0.921622 -149 AACACTTTATGCGCCGGGGCCCACGAATAC 18 91 1 GCGCCGGGGC 0.535924 -104 GCACGGGATGCTGCCGTCCGTATTCGTGGG 18 110 0 CTGCCGTCCG 0.565501 -85 GCAGCATCCCGTGCCGCGGCTGGCCGGACG 18 126 1 GTGCCGCGGC 0.98312 -69 TCAACGGTAGGTGCCGCGGGGCTTGAAG 19 9 0 GTGCCGCGGG 0.983467 -23 TACGCGACAACACCCGGGGGTAAGCG 21 7 0 CACCCGGGGG 0.498779 -199 CCATGATGGAGCGCAGCGCCGGAACAGATG 21 41 1 GCGCAGCGCC 0.974475 -165 GCTCGCAAGGCGACCGAGCCGACAGCGTCC 21 116 0 CGACCGAGCC 0.751569 -90 GTATCGGGATTCCCCGCCGCCACCGGCTTG 21 174 1 TCCCCGCCGC 0.832804 -32 GCGACGATGCGCGCCGCAGCGATACCTTGC 22 30 1 GCGCCGCAGC 0.734652 -127 ACCAACAGGTTGGCCGGGGGCCCTGTTAGG 22 63 1 TGGCCGGGGG 0.96789 -94 CGCTGTCCTCCCGCAGGGTCTTCGTTGACC 23 11 1 CCGCAGGGTC 0.816852 -250 CGCTGAGGCAGGGTCGGGGCCGCCGTTTTT 23 107 0 GGGTCGGGGC 0.577344 -154 AGCGGCCCGTCCGCAGTGGGTGCCACGTAG 23 182 1 CCGCAGTGGG 0.852965 -79 GGCCCCAGGAGGTCAGCGCC 25 1 0 GGTCAGCGCC 0.601428 -197 GCCGGGTGCTTTGCCGGCCCCAGGAGGTCA 25 16 0 TTGCCGGCCC 0.720807 -182 GGCGCAGACCGGGCCGCTTCGACTCAGGAA 25 80 1 GGGCCGCTTC 0.638833 -118 TAAACCTTAGCCCCCGCGGGCACCGCTGGG 26 117 1 CCCCCGCGGG 0.938622 -70 CCCGCGGGCACCGCTGGGCGAGCCACGATC 26 129 1 CCGCTGGGCG 0.596327 -58 GCGCCCAATAGAGCAGTGCGCGGTAACGTC 27 16 0 GAGCAGTGCG 0.614252 -29 CGCGCCCGGGCGCCCAATAGAG 27 33 0 CGCCCGGGCG 0.49683 -12 AAGGGCGCCACCGCAGCGCGCCGGGCATCC 28 38 0 CCGCAGCGCG 0.968773 -187 CGTTCGAGTCGTGCCGGGGGCACTGTGGAA 29 189 1 GTGCCGGGGG 0.950332 -112 GTCCCTAGACGCACCGCGGGGGCAATGGTA 30 12 1 GCACCGCGGG 0.981623 -71 ACCGCAGAGCCTCCTAGCATT 30 72 0 CCGCAGAGCC 0.771845 -11 CCAGGTGCGCGGCCCGCGGGTAGGCCTGGC 32 46 0 GGCCCGCGGG 0.95121 -121 CCGTCCAGTCTGGCAGGCCGGAAACATCGG 32 92 1 TGGCAGGCCG 0.685484 -75 GTGAACCGGCGAGCCGGGTGAGGAGGATCT 32 147 1 GAGCCGGGTG 0.728036 -20 TGAGCTGGGGTGACCGCGGCCGAGACCTGC 33 73 1 TGACCGCGGC 0.956518 -144 AGCTTTCGCGGGACCGGGGGTCACAACGGG 33 126 0 GGACCGGGGG 0.737011 -91 ACCGATCGACCAACCGCGGCGCAGCGGTAC 33 185 1 CAACCGCGGC 0.930759 -32 TGCGGGGTGGCGGTCGTGGCAGCATTGAGT 35 14 0 CGGTCGTGGC 0.512016 -39 TGCACCGAATTCGCCGTGGCG 36 2 0 TCGCCGTGGC 0.935746 -134 GCACGCAAGCTCGCCGTGGCGTTACGCTCG 36 29 1 TCGCCGTGGC 0.935746 -107 GGCGTTACGCTCGCAGCGGCTGGCGCGCCC 36 46 1 TCGCAGCGGC 0.957493 -90 GGTCGGCAGGTAGCCGGGGCGCGCCAGCCG 36 62 0 TAGCCGGGGC 0.938504 -74 CCAACAATACCAACCGGGCGGTTGGTCGGC 36 85 0 CAACCGGGCG 0.755047 -51 GGGTGAGGAGGAGCCGGGCGATTCGGTTGG 38 13 1 GAGCCGGGCG 0.656114 -189 CAGCGGCCCATCGCCGTGCGACGTAGGCCG 38 104 0 TCGCCGTGCG 0.915066 -98 CTTCCGAATTGAACAGCGGCCCATCGCCGT 38 117 0 GAACAGCGGC 0.780373 -85 CCGCAACAGCTGACAGCCCCTTCCGAATTG 38 136 0 TGACAGCCCC 0.482679 -66 GGTCGACGGCTGGCCGAGTGCTACCGTCGA 41 30 0 TGGCCGAGTG 0.703403 -185 CAACGCTTTCCGCCCGCGCGAATCGGGGTC 41 56 0 CGCCCGCGCG 0.935634 -159 ATGCCAGACTCCGCCGGCGGGCCGTTGCAG 41 88 0 CCGCCGGCGG 0.499455 -127 CATCCAGCCCGGACCGGGCCAAAACCCAGT 41 181 0 GGACCGGGCC 0.711058 -34 GACATACTGCTGGCCGCCTGCGTCCGGTCG 42 34 1 TGGCCGCCTG 0.85615 -267 CGCCTGCGTCCGGTCGCGGGCTGACTCCGG 42 48 1 CGGTCGCGGG 0.886745 -253 GGGGAGATCTGGCCAGCGGCACGCTCCTGG 42 81 0 GGCCAGCGGC 0.889251 -220 ATCTCCCCGCGGGCCGCGCGGGATAAGCCG 42 103 1 GGGCCGCGCG 0.987693 -198 GGTATTTCTTGCTCCGCGGCTTATCCCGCG 42 119 0 GCTCCGCGGC 0.915359 -182 AGTCCTACCATGGCCGGGTGGGATGGGAGT 42 183 0 TGGCCGGGTG 0.912169 -118 CACCATCCTTTCGCCGAGCGTGTACCCAGT 42 276 0 TCGCCGAGCG 0.898052 -25 ATCACCCCGATGACCGAGGCTGCCGT 43 64 1 TGACCGAGGC 0.710277 -16 ACTATCGCAACGGCAGTGCCGC 46 3 0 CGGCAGTGCC 0.790213 -28 GACGCGGTGCCGCCGCGGGCGATACGCTC 48 10 1 CCGCCGCGGG 0.985227 -227 AAGTCTGTCGCCGCCGCGGCCAGCATCTCC 48 87 0 CCGCCGCGGC 0.982648 -150 GTGCCGACCTGTGCCGCGTCTCGAGTTCTC 48 216 0 GTGCCGCGTC 0.925217 -21 CGTGATTGTGCGACAGCCGCCATCTTCCTG 50 119 0 CGACAGCCGC 0.705843 -103 CCGGAAATTGTAACCGCGGGACCCCTCCGT 50 172 0 TAACCGCGGG 0.880973 -50 GAACTAGCAGCGACCGGGGGGATGGTCAGG 51 25 0 CGACCGGGGG 0.728408 -190 TCCTCGGATGTAGCAGGGCCTTATGGTGGA 51 53 0 TAGCAGGGCC 0.71569 -162 CTCTTTCTGCCCGTCGGGTGTGAGCTTGTC 53 36 0 CCGTCGGGTG 0.406387 -38 AAAGAGGTGGCGGCCGTGGCAACC 53 60 1 CGGCCGTGGC 0.952574 -14 TTTCATGACCGCGCGAGGTGGTGCG 57 6 1 TGACCGCGCG 0.942095 -266 GACATGTAGCGGGCAGCTCCTCTTCCGGGC 57 69 1 GGGCAGCTCC 0.561205 -203 GTTTGCAAACGAACCGCCCGGAAGAGGAGC 57 84 0 GAACCGCCCG 0.777167 -188 CTGCAGACCTCCGCGTCGACAATTTCA 57 255 0 CCTCCGCGTC 0.647046 -17 CGGCGCCGCTTGTGCCAGGGTG 58 3 1 GCGCCGCTTG 0.663324 -182 TGCCAGGGTGTACCCGCCCGATTGCCGCCG 58 23 1 TACCCGCCCG 0.527695 -162 ACCCGCCCGATTGCCGCCGGCAACCGACAC 58 34 1 TTGCCGCCGG 0.876888 -151 AATCAGCAGTGCCCCGGGTGGGTCTTGACG 58 81 1 GCCCCGGGTG 0.481304 -104 CGCACCAGGCTCGCCGCCCCCATTAGACTT 59 20 1 TCGCCGCCCC 0.955898 -89 TCGGAGTCTGGTGCCGCGCCGCCACGCCAA 59 65 1 GTGCCGCGCC 0.976873 -44 TCAAAGAGGGTACCCGCCCGATTCGACCCT 60 18 0 TACCCGCCCG 0.527695 -22 AAGTGCCGTGGCCACCGACTCG 61 3 1 GTGCCGTGGC 0.887727 -83 GCGGAGGTTGTCGCCGAGTCGGTGGCCACG 61 17 0 TCGCCGAGTC 0.717408 -69 TCGGCGACAACCTCCGCGGCCCCGCATCCT 61 30 1 CCTCCGCGGC 0.896002 -56 TCACCGCCCTTAACCGCGTCGCCTACCATC 61 59 1 TAACCGCGTC 0.60568 -27 TCCGTTAGCGGTAGCGCCCCGTTCGACG 63 9 1 CGGTAGCGCC 0.541237 -71 CTATGCAATAGGGTCGCGGC 63 70 1 GGGTCGCGGC 0.905416 -10 ********** Masking position 6 Map Score: 119.437 Number of sites scoring better than the average of aligned sites = 63094 Number in coding regions = 58862 Number in noncoding regions = 4232 Number of orfs with sites within 600 bp upstream = 1412 Fraction of orfs with sites within 600 bp upstream = 0.226791 Motif number 2 TTCCAGGGTTACCGTCGCGCTCATCCGGAG 1 22 0 ACCGTCGCGC 0.710336 -260 CAATGTTTGCAGCGAGGCCGCGGCTCGTCA 1 111 0 AGCGAGGCCG 0.70542 -171 CACAACGAGGGCGCTCCCCGATCTGGCGCG 1 168 1 GCGCTCCCCG 0.883106 -114 GCCAGGCTAACCGGTGGCGCCGACGGTGAG 4 14 1 CCGGTGGCGC 0.951253 -73 CTGCACTACCCGCGTCGCGCTGCAGCACAC 4 63 0 CGCGTCGCGC 0.818482 -24 GACGCGGGTAGTGCAGCCCG 4 77 1 GTGCAGCCCG 0.456429 -10 CAGCAGCGCAACCATGGCCCAGGTCTGGAC 5 40 1 ACCATGGCCC 0.644919 -62 CTGGACGTACGCGATCACCGCCGCTGTGCG 5 64 1 GCGATCACCG 0.664859 -38 CGTTTCGGATCTCCTCGCCGCACAGCGGCG 5 82 0 CTCCTCGCCG 0.844586 -20 TCTGGTTCTCGTGATGCCGGTG 7 3 0 GTGATGCCGG 0.682574 -40 CCGGGTGACTAGGATCGCGGTTATCACCG 8 76 1 AGGATCGCGG 0.808109 -19 CAACGACGTGCCGATCGCCGAATCC 9 6 0 CCGATCGCCG 0.925804 -295 CAGTACGAATCCCGTGACCGCAACGGCCAG 9 78 0 CCCGTGACCG 0.891653 -223 GCGAATAGTCGAGCTCGCGCTGCCACTTGC 9 158 1 GAGCTCGCGC 0.615863 -143 GGTTTTGCGTCTGCTCGCCGTCGTTTCGTG 9 206 0 CTGCTCGCCG 0.904963 -95 GCCGGTAGATATCGTGGCGGAATGGACTTC 9 278 1 ATCGTGGCGG 0.852158 -23 CCGTATTGACCCCCTGTCCGATAGCCTGCC 10 24 0 CCCCTGTCCG 0.749346 -33 GGCCAATTGTATGGTCGCCCTATGAGTAGG 12 16 1 ATGGTCGCCC 0.600691 -28 GTAGGGTGACGCCATGACCGCCGGCGACGA 14 46 1 GCCATGACCG 0.695974 -53 TGCGCTCGGCATCGTCGCCGGCGGTCATGG 14 57 0 ATCGTCGCCG 0.750314 -42 CCGCAAGACACCGATTGCGGCCTAGCATCA 16 16 0 CCGATTGCGG 0.464431 -79 GTCAACGACGAGGGTGACGCTACTGCACTG 16 51 0 AGGGTGACGC 0.57978 -44 CGTTGGCTAGCGGATGGCCGGCGAAATGGG 17 20 0 CGGATGGCCG 0.953256 -94 TCCCGTGCCGCGGCTGGCCGGACGTGATCC 18 132 1 CGGCTGGCCG 0.976625 -63 AGCGTCCTAGCGGGAGACGCTTGGATGCTC 21 93 0 CGGGAGACGC 0.338217 -113 TCCCGCTAGGACGCTGTCGGCTCGGTCGCC 21 108 1 ACGCTGTCGG 0.685303 -98 CCTGTGCAAGCCGGTGGCGGCGGGGAATCC 21 180 0 CCGGTGGCGG 0.984834 -26 TGCGGCGCGCATCGTCGCCCGGATAGGCTC 22 18 0 ATCGTCGCCC 0.461884 -139 GGGCCCTGTTAGGGTGCCGGTACGGGACCT 22 80 1 AGGGTGCCGG 0.891568 -77 TAACGTTAGCGCGAACGCGGGTCGGCGTCT 23 54 1 GCGAACGCGG 0.606218 -207 GCGGCGAGCACCGGTGACCGTGACTTTGGT 23 152 1 CCGGTGACCG 0.935159 -109 ATTCGTCAGCGAGGAGGCGGCG 23 249 1 GAGGAGGCGG 0.699268 -12 GAGGCTATATAGGCTGACCCA 24 16 1 AGGCTGACCC 0.535496 -11 CGTTTCGCTACGGGACGCCGGGTGCTTTGC 25 32 0 CGGGACGCCG 0.801533 -166 CCAATGGACGGCGCAGACCGGGCCGCTTCG 25 71 1 GCGCAGACCG 0.59772 -127 GACTCAGGAAGCGATCTCCGTCGCGAAACA 25 100 1 GCGATCTCCG 0.476234 -98 GTTGGTTGGTAGCGTCGCCGATCCCAAGGG 25 149 1 AGCGTCGCCG 0.87943 -49 AGGGAGGAATCGCATGGCCCTGACTGTGGT 25 175 1 CGCATGGCCC 0.769568 -23 CCGGATGACAACGCTGGCCGGGAACCCGGG 26 79 0 ACGCTGGCCG 0.962155 -108 GGCTCGCCCAGCGGTGCCCGCGGGGGCTAA 26 123 0 GCGGTGCCCG 0.951331 -64 CTTCAGGGGAGGCGAGGCCC 26 177 1 GGCGAGGCCC 0.555555 -10 TTGTACCGGTCGGATGCCCGGCGCGCTGCG 28 27 1 CGGATGCCCG 0.872714 -198 CCGGCGCGCTGCGGTGGCGCCCTTTGCGTA 28 44 1 GCGGTGGCGC 0.940562 -181 ACCAATAATTGACGTGGCGGTAGACCTTTC 29 45 1 GACGTGGCGG 0.890984 -256 AGTTTATCTAACGGTGGCCGTCGAGGAATT 29 95 0 ACGGTGGCCG 0.969773 -206 GCACGTTCGAGTCGTGCCGGGGGCACTGTG 29 186 1 GTCGTGCCGG 0.779365 -115 GTCGACCCATAACGAGGCGGTGTCAAGCCA 29 241 0 AACGAGGCGG 0.420627 -60 TCAAACCACGGAGGTGCCCG 29 291 1 GAGGTGCCCG 0.835105 -10 GACGGTCTCCGTACACGACTC 31 2 1 ACGGTCTCCG 0.588917 -114 ATGCGGTAGGCACCAGGCGGAGGAACC 31 99 1 CACCAGGCGG 0.567649 -17 TATTGGTATTGCGATCACGGTGCCAGGCCT 32 25 1 GCGATCACGG 0.652964 -142 CCAGGCCTACCCGCGGGCCGCGCACCTGGT 32 47 1 CCGCGGGCCG 0.59372 -120 TAAAGCCTATCTGCTGACCGATGTTTCCGG 32 109 0 CTGCTGACCG 0.791428 -58 CCTCCTCACCCGGCTCGCCGGTTCACATCG 32 143 0 CGGCTCGCCG 0.952204 -24 GAAACCGTTGCCGTTGAGTGTGT 33 4 1 ACCGTTGCCG 0.397858 -213 GTGCACCATCCGGGTGTCGGTGAGCGTGCA 33 40 0 CGGGTGTCGG 0.834407 -177 CCAGTGAGCTGGGGTGACCGCGGCCGAGAC 33 69 1 GGGGTGACCG 0.902981 -148 CCGCGGCCGAGACCTGCCGGGTTCCCGGCC 33 86 1 GACCTGCCGG 0.684739 -131 GTTGTGACCCCCGGTCCCGCGAAAGCTGTT 33 129 1 CCGGTCCCGC 0.764804 -88 GGCGATGACGCAAAGGAGAGA 34 2 1 GCGATGACGC 0.520819 -80 ACGCAGGTGCGGGGTGGCGGTCGTGGCAGC 35 21 0 GGGGTGGCGG 0.977881 -32 CGGTGCACGCAAGCTCGCCGTGGCGTTACG 36 25 1 AAGCTCGCCG 0.764059 -111 ACGCTCGCAGCGGCTGGCGCGCCCCGGCTA 36 52 1 CGGCTGGCGC 0.924536 -84 CGGGGTGAGGAGGAGCCGGGCGATTCGGT 38 10 1 GAGGAGCCGG 0.438122 -192 CGTCCCGGACCGCATCCCCCTACATTGAGG 38 50 0 CGCATCCCCC 0.356402 -152 TGCCACCGTTGCCGTCCCGGACCGCATCCC 38 62 0 GCCGTCCCGG 0.84029 -140 TGAACAGCGGCCCATCGCCGTGCGACGTAG 38 108 0 CCCATCGCCG 0.877674 -94 CGTCGAACGCGTGCTGTCCGGCGGG 41 6 0 GTGCTGTCCG 0.582109 -209 TCGGGGTCGACGGCTGGCCGAGTGCTACCG 41 34 0 CGGCTGGCCG 0.976625 -181 ACCCCGATTCGCGCGGGCGGAAAGCGTTGG 41 57 1 GCGCGGGCGG 0.626819 -158 CTGCAACGGCCCGCCGGCGGAGTCTGGCAT 41 88 1 CCGCCGGCGG 0.390098 -127 GCCCTCGATCAGGCTGGCGGCAGGCCTGGT 41 135 0 AGGCTGGCGG 0.951051 -80 GCAGTATGTCACCATCGCCGGGATCATCAC 42 14 0 ACCATCGCCG 0.758697 -287 TGGTGACATACTGCTGGCCGCCTGCGTCCG 42 30 1 CTGCTGGCCG 0.950639 -271 CCGCCTGCGTCCGGTCGCGGGCTGACTCCG 42 47 1 CCGGTCGCGG 0.969146 -254 CGGCACGCTCCTGGTGACCGGAGTCAGCCC 42 65 0 CTGGTGACCG 0.827232 -236 GGTCACCAGGAGCGTGCCGCTGGCCAGATC 42 76 1 AGCGTGCCGC 0.572664 -225 CCAGATCTCCCCGCGGGCCGCGCGGGATAA 42 99 1 CCGCGGGCCG 0.59372 -202 GCTACTCATACTGATCGCGGTCCTAGCGGT 42 146 0 CTGATCGCGG 0.798356 -155 CAGCAGTCCTACCATGGCCGGGTGGGATGG 42 187 0 ACCATGGCCG 0.864106 -114 CGCTATCACCCCGATGACCGAGGCTGCCGT 43 60 1 CCGATGACCG 0.833604 -20 GACGCGGTGCCGCCGCGGGCGAT 48 4 1 GCGGTGCCGC 0.841701 -233 CAATGCAAACCACATGGCCGTCCTCCTCGT 48 49 0 CACATGGCCG 0.788917 -188 GAACCCGGAGATGCTGGCCGCGGCGGCGAC 48 81 1 ATGCTGGCCG 0.894078 -156 GATCCCTGACCTGATGCCGCCCAAGTCTGT 48 109 0 CTGATGCCGC 0.434054 -128 AGCTACCAGCCAGGTCACCGCAGAGGACGC 48 153 0 CAGGTCACCG 0.647509 -84 CACGGTACGGGACCTGGCGGCCCAAGACAC 50 22 1 GACCTGGCGG 0.866256 -200 GTGGTAGGTGATCATCGCCGTCAACTCCGC 50 90 0 ATCATCGCCG 0.510708 -132 CTACCACAGGAAGATGGCGGCTGTCGCACA 50 113 1 AAGATGGCGG 0.731361 -109 ACAATCACGTGGCCTGGCGGTGGCATCCGC 50 140 1 GGCCTGGCGG 0.952967 -82 GCGGTGGCATCCGCTGACGGAGGGGTCCCG 50 156 1 CCGCTGACGG 0.915534 -66 CGCTGACGGAGGGGTCCCGCGGTTACAATT 50 167 1 GGGGTCCCGC 0.67918 -55 TGTTACAACCGGGAAGACGGCCGGGTTGCC 51 112 1 GGGAAGACGG 0.33233 -103 GGAAGACGGCCGGGTTGCCGTTGGCGTTGG 51 123 1 CGGGTTGCCG 0.676019 -92 TAGTGGACGGCTGCTGACGGCCAGTGATAA 51 164 1 CTGCTGACGG 0.782556 -51 CGGGCAGAAAGAGGTGGCGGCCGTGGCAAC 53 53 1 GAGGTGGCGG 0.934742 -21 AACGTGTTCTAGCCTGGCCCC 54 2 0 AGCCTGGCCC 0.769537 -110 CCCGACGCACCACCTCGCGCGGTCATGAAA 57 11 0 CACCTCGCGC 0.533208 -261 CCCGGAAGAGGAGCTGCCCGCTACATGTCG 57 68 0 GAGCTGCCCG 0.800538 -204 GTCGTCGTCTCGGCTGTCGGGAGGTGGGAA 57 136 0 CGGCTGTCGG 0.799087 -136 ATGTGAAATTGTCGACGCGGAGGTCTGCAG 57 252 1 GTCGACGCGG 0.458155 -20 GTGTACCCGCCCGATTGCCGCCGGCAACCG 58 30 1 CCGATTGCCG 0.477787 -155 TCGTTCCAGTCCCATGCCCGGGTACCGGAC 58 138 0 CCCATGCCCG 0.829523 -47 ACACCGCACCAGGCTCGCCGCCCCCATTAG 59 16 1 AGGCTCGCCG 0.910146 -93 CGATCGGAGTCTGGTGCCGCGCCGCCACGC 59 62 1 CTGGTGCCGC 0.688284 -47 TGCAGGTGTTGGCGTGGCGGCGCGGCACCA 59 73 0 GGCGTGGCGG 0.96236 -36 CCAACACCTGCACCTGTCGGCACAGGTA 59 91 1 CACCTGTCGG 0.422076 -18 GCCCGATTCGACCCTGACCGGC 60 3 0 ACCCTGACCG 0.740796 -37 GGAGGTTGTCGCCGAGTCGGTGGCCACGGC 61 15 0 GCCGAGTCGG 0.317476 -71 GCGGCCCCGCATCCTCACCGCCCTTAACCG 61 45 1 ATCCTCACCG 0.319326 -41 CTCGATGGTAGGCGACGCGGTTAAGGGCGG 61 62 0 GGCGACGCGG 0.672372 -24 AATGACGAACATCGTGCCGCTATCGACTGC 62 22 0 ATCGTGCCGC 0.35571 -46 CCTATGCAATAGGGTCGCGGC 63 69 1 AGGGTCGCGG 0.923801 -11 ********** Masking position 8 Map Score: 132.064 Number of sites scoring better than the average of aligned sites = 67488 Number in coding regions = 63449 Number in noncoding regions = 4039 Number of orfs with sites within 600 bp upstream = 1521 Fraction of orfs with sites within 600 bp upstream = 0.244298 Motif number 3 CGGATGAGCGCGACGGTAACCCTGGAATTGT 1 25 1 CGCGGTAACC 0.770761 -257 CTGTCTAAGTGGTGCGTAACCGTTTGACGAG 1 87 1 GGGCGTAACC 0.842973 -195 CCCGATCTGGCGCGCGCAACGAGGTGCGCAC 1 184 1 CGGCGCAACG 0.860729 -98 CTCGCCAGGCTAACCGGTGGCGCCG 4 5 1 CCGGCTAACC 0.458481 -82 CCGACGATCAGCAGCGCAACCATGGCCCAGG 5 32 1 GCGCGCAACC 0.862729 -70 CCTAACCGGCGGCCCCGAAGCGTAGTGATGT 6 17 1 GGCCCGAAGC 0.84782 -72 CGAGCGCATCCGACTGACCTT 8 1 1 CGGCGCATCC 0.893458 -94 GCATCAACGACGTGCCGATCGCCGAATCC 9 9 0 CGGCCGATCG 0.75885 -292 GCCACAGTTCGGTGCCGTAGCTGCGATACCA 9 47 1 GGGCCGTAGC 0.768285 -254 ACGATATCTACCGGCGCTAGCAGACGCATAA 9 262 0 CCGCGCTAGC 0.578458 -39 CCACATGCTGGCAGGCTATCGGACAGGGGGT 10 15 1 GCGGCTATCG 0.316064 -42 TCATCGCTGCGCTCGGCATCGTCGCCGGCGG 14 63 0 GCCGGCATCG 0.708439 -36 CACACCCTACGGCCCGCTAGGCTATCGACCA 15 11 0 GGCCGCTAGG 0.731389 -25 AATTGGCTCCCGAGCGGTTCGGTCAACGACG 16 71 0 CGGCGGTTCG 0.772844 -24 CACCCATTTCGCCGGCCATCCGCTAGCCAAC 17 18 1 GCGGCCATCC 0.774004 -96 TGCTCGCCTTCCCATGCTGTTG 17 102 0 GCCGCCTTCC 0.734215 -12 GCCAGCCGCGGCACGGGATGCTGCCGTCCGT 18 119 0 GCCGGGATGC 0.657681 -76 CGACAACACCCGGGGGTAAGCG 21 2 0 CGGGGTAAGC 0.538892 -204 CTGTCGGCTCGGTCGCCTTGCGAGCCATCCG 21 121 1 GGCGCCTTGC 0.734215 -85 GGCGGTCGAGCCTATCCGGGCGACGAT 22 7 1 CGGCCTATCC 0.680006 -150 GTATCGCTGCGGCGCGCATCGTCGCCCGGAT 22 24 0 GGGCGCATCG 0.875787 -133 TAACAGGGCCCCCGGCCAACCTGTTGGTTGG 22 60 0 CCGGCCAACC 0.749217 -97 TTCAAGACTAGGTCCCGTACCGGCACCCTAA 22 88 0 GGCCCGTACC 0.914675 -69 GAAAAACGGCGGCCCCGACCCTGCCTCAGCG 23 106 1 GGCCCGACCC 0.641035 -155 CACCGGTGCTCGCCGCCAACGACGGCTGCGA 23 137 0 CGCGCCAACG 0.803464 -124 CACTGCGGACGGGCCGCTACCAAAGTCACGG 23 169 0 GGCCGCTACC 0.938478 -92 GATAGGTAGTGGTAGGCAACCTTCGTGATTC 23 222 1 GGAGGCAACC 0.227769 -39 AAGCACCCGGCGTCCCGTAGCGAAACGGACT 25 35 1 CGCCCGTAGC 0.740784 -163 GGCGCAGACCGGGCCGCTTCGACTCAGGAAG 25 80 1 GGCCGCTTCG 0.85182 -118 TGACAACGCTGGCCGGGAACCCGGGCCTACT 26 73 0 GGCGGGAACC 0.94517 -114 CGGTGCCCGCGGGGGCTAAGGTTTATCGTGT 26 111 0 GGGGCTAAGG 0.368449 -76 ATAGAGCAGTGCGCGGTAACGTCGTGGG 27 8 0 GCCGGTAACG 0.464812 -37 ACCGCAGCGCGCCGGGCATCCGACCGGTACA 28 28 0 GCGGGCATCC 0.825442 -197 CGCTGCGGTGGCGCCCTTTGCGTATATCACA 28 50 1 GCCCCTTTGC 0.258758 -175 CGAGGTTACCCGTCCCTTAGCCAACATGTCC 28 168 0 CGCCCTTAGC 0.447375 -57 AAAAATTCCTCGACGGCCACCGTTAGATAAA 29 92 1 CGCGGCCACC 0.713611 -209 CCTGAGCTACGGAGGCGATGCGCAGGTCAGT 29 122 0 GGGGCGATGC 0.754837 -179 GATCACGGTGCCAGGCCTACCCGCGGGCCGC 32 37 1 CCGGCCTACC 0.683374 -130 CCTACCCGCGGGCCGCGCACCTGGTAACAGT 32 52 1 GGCGCGCACC 0.740243 -115 CGAGTTGTCCGGCCGGGAACCCGGCAGGTCT 33 95 0 GGCGGGAACC 0.94517 -122 TTACGTTAAACGGCGCCATCGATATGCGACC 33 157 1 CGCGCCATCG 0.764033 -60 GTACCGCTGCGCCGCGGTTGGTCGATCGGTC 33 184 0 GCGCGGTTGG 0.428387 -33 CAACCGCGGCGCAGCGGTACGAGAGGGTATG 33 195 1 GCGCGGTACG 0.706708 -22 AATGCTGCCACGACCGCCACCCCGCACCTGC 35 18 1 CGCCGCCACC 0.744845 -35 CCAGCCGCTGCGAGCGTAACGCCACGGCGAG 36 38 0 CGGCGTAACG 0.637344 -98 GGCTGGCGCGCCCCGGCTACCTGCCGACCAA 36 63 1 CCCGGCTACC 0.768834 -73 GCCGACCAACCGCCCGGTTGGTATTGTTGGG 36 85 1 CGCCGGTTGG 0.597698 -51 TTTCTTCCCCGGAGGGCATCC 36 125 1 GGGGGCATCC 0.888735 -11 CCAACCGAATCGCCCGGCTCCTCCTCACCCC 38 12 0 CGCCGGCTCC 0.721518 -190 TTGCCGTCCCGGACCGCATCCCCCTACATTG 38 53 0 GGCCGCATCC 0.940743 -149 ATGCGGTCCGGGACGGCAACGGTGGCACACT 38 65 1 GGCGGCAACG 0.890388 -137 GAATTGAACAGCGGCCCATCGCCGTGCGACG 38 111 0 GCGCCCATCG 0.658549 -91 TGGGGCCGTACCGGTTGGGCCC 40 2 1 GGGCCGTACC 0.901384 -36 ACCTTCAGATGGGGCCCAACCGGTACGGCCC 40 13 0 GGGCCCAACC 0.923727 -25 CCGCCGGACAGCACGCGTTCGACGGTAGCAC 41 12 1 GCCGCGTTCG 0.567768 -203 ACTCCGCCGGCGGGCCGTTGCAGACCAACGC 41 80 0 CGGCCGTTGC 0.676403 -135 ACTGGGTTTTGGCCCGGTCCGGGCTGGATGT 41 181 1 GGCCGGTCCG 0.466036 -34 CAGTGATGATCCCGGCGATGGTGACATACTG 42 12 1 CCGGCGATGG 0.296755 -289 TCCCATCCCACCCGGCCATGGTAGGACTGCT 42 185 1 CCGGCCATGG 0.296764 -116 GTTGACGGTCGGAGCGTATCGCCCGCGGCGG 48 20 0 GGGCGTATCG 0.668972 -217 AGGGATCAGCGCCGCCTATGCGCGTCCTCTG 48 132 1 GCGCCTATGC 0.302578 -105 TCGATAAAGACGTGCCTAAGCTACCAGCCAG 48 170 0 CGGCCTAAGC 0.501491 -67 TGGGCCGCCAGGTCCCGTACCGTGAGCCACC 50 15 0 GGCCCGTACC 0.914675 -207 CCAAGACACTCGACGCGATCCACGTGGCGAC 50 43 1 CGCGCGATCC 0.871283 -179 ATCCGCTGACGGAGGGGTCCCGCGGTTACAA 50 164 1 GGGGGGTCCC 0.561805 -58 TACAATTTCCGGGCCGGAACGCACAAGTGGG 50 190 1 GGCCGGAACG 0.906704 -32 ACGCACAAGTGGGCGGGTAGCGAG 50 208 1 GGCGGGTAGC 0.828376 -14 TAGCAGCGACCGGGGGGATGGTCAGGGTAAG 51 20 0 CGGGGGATGG 0.607854 -195 CTGAATCCAGCGACCGTTTCCTCGGATGTAG 51 70 0 CGCCGTTTCC 0.702477 -145 CCGGGAAGACGGCCGGGTTGCCGTTGGCGTT 51 120 1 GGCGGGTTGC 0.792751 -95 GGTTGCCACGGCCGCCACCTCTTTCTGCC 53 55 0 CGCCGCCACC 0.763591 -19 CACTCCTGCGGGTTCGCTACCTAAGCAAGCA 55 32 0 GGTCGCTACC 0.205488 -23 GCTCCTCTTCCGGGCGGTTCGTTTGCAAACG 57 84 1 CGGCGGTTCG 0.783996 -188 GCCCGATTGCCGCCGGCAACCGACACTGTTG 58 38 1 CGCGGCAACC 0.922402 -147 TCTTGGTGACCGTCCGGTACCCGGGCATGGG 58 127 1 CGCCGGTACC 0.912463 -58 GTCTAATGGGGGCGGCGAGCCTGGTGCGGTG 59 17 0 GGGGCGAGCC 0.340697 -92 TTGGCGTGGCGGCGCGGCACCAGACTCCGAT 59 64 0 GGGCGGCACC 0.727012 -45 GGGTCGAATCGGGCGGGTACCCTCTTTGACG 60 19 1 GGCGGGTACC 0.927732 -21 AACCTCCGCGGCCCCGCATCCTCACCGCCCT 61 38 1 GCCCGCATCC 0.859001 -48 CCCTTAACCGCGTCGCCTACCATCGAGCCTC 61 65 1 CGCGCCTACC 0.864387 -21 ATCGTCGAACGGGGCGCTACCGCTAACGGA 63 10 0 GGGCGCTACC 0.927879 -70 ** ******** Masking position 2 Map Score: 96.4053 Number of sites scoring better than the average of aligned sites = 33674 Number in coding regions = 31209 Number in noncoding regions = 2465 Number of orfs with sites within 600 bp upstream = 1172 Fraction of orfs with sites within 600 bp upstream = 0.188243 Motif number 4 CAAACCCAGACGTGCGGGCTTCAATGTTTGC 1 131 0 CGTGCGGCTT 0.360278 -151 CGCGCAACGAGGTGCGCACTATCCATTCGAG 1 196 1 GGTGCGCCTA 0.784209 -86 TGCTCAGGCCGGTGCGGTTTGTCGAGAAAGG 1 245 1 GGTGCGGTTG 0.898855 -37 GACCATCGTAGGTGCGGTCTAGCGGCT 3 7 0 GGTGCGGCTA 0.960223 -35 CCTCCTCATCGCTGCGCTCGGCATCGTCGCC 14 68 0 GCTGCGCCGG 0.670514 -31 ATTTGCTGCTGGTGCGGAGGATTAGGCA 18 8 0 GGTGCGGGGA 0.975002 -187 GTCAACGGTAGGTGCCGCGGGGCTTGAAG 19 9 0 GGTGCCGGGG 0.969076 -23 GTGCAAGCCGGTGGCGGCGGGGAATCCCGAT 21 176 0 GTGGCGGGGG 0.861081 -30 GAGTCGAAGCGGCCCGGTCTGCGCCGTCCAT 25 74 0 GGCCCGGCTG 0.824406 -124 CTCGCCCAGCGGTGCCCGCGGGGGCTAAGGT 26 120 0 GGTGCCCCGG 0.825105 -67 CGGCGAGCCGGGTGAGGAGGATCT 32 153 1 GGTGAGGGGA 0.78098 -14 ACGGGCGAGTTGTCCGGCCGGGAACCCGGCA 33 100 0 TGTCCGGCGG 0.742695 -117 ATGTTACGCAGGTGCGGGGTGGCGGTCGTGG 35 25 0 GGTGCGGGTG 0.992643 -28 CGGGGTGAGGAGGAGCCGGGCGAT 38 4 1 GGTGAGGGGA 0.78098 -198 GCTGTCAGCTGTTGCGGTCTGAGTGGTCGGT 38 149 1 GTTGCGGCTG 0.958128 -53 GAACGCGTGCTGTCCGGCGGG 41 1 0 TGTCCGGGGG 0.742695 -214 GTTTTGGCCCGGTCCGGGCTGGATGTTTGGA 41 186 1 GGTCCGGCTG 0.965518 -29 CCTGCGTCCGGTCGCGGGCTGACTCCGGTCA 42 50 1 GTCGCGGCTG 0.79325 -251 TTCCGGGCTTGTTGCGGACTGGCAGGA 49 7 0 GTTGCGGCTG 0.958128 -31 GGAGACGTTGGGTGCGGAGTTGACGGCGATG 50 77 1 GGTGCGGGTT 0.913056 -145 GGATGGTCAGGGTAAGGAGGGTGCC 51 5 0 GGTAAGGGGG 0.442136 -210 CGCGCGAGGTGGTGCGTCGGGAGCGCTACTG 57 20 1 GGTGCGTGGG 0.892007 -252 AACAGTGTCGGTTGCCGGCGGCAATCGGGCG 58 37 0 GTTGCCGCGG 0.841641 -148 CGGCGAGCCTGGTGCGGTGTGCGAA 59 5 0 GGTGCGGGTG 0.992643 -104 AAGTCTAATGGGGGCGGCGAGCCTGGTGCGG 59 19 0 GGGGCGGGAG 0.706525 -90 ******* *** Masking position 5 Map Score: 25.4137 Number of sites scoring better than the average of aligned sites = 6650 Number in coding regions = 6173 Number in noncoding regions = 477 Number of orfs with sites within 600 bp upstream = 392 Fraction of orfs with sites within 600 bp upstream = 0.0629618 Motif number 5 CCGAGACCTAACCGGCGGCCCCGAAGCGTAG 6 8 1 CTACGCGGCC 0.595806 -81 CAACGACGTGCCGATCGCCGAATCC 9 2 0 CCACGCGATC 0.710082 -299 CGCCATGACCGCCGGCGACGATGCCGAGCGCAGC 14 55 1 GCGCGCGAGC 0.831519 -44 TAGCGTCACCCTCGTCGTTGACCGAACCGCTCGG 16 59 1 CTGCGTGACG 0.702237 -36 TCTCACCCATTTCGCCGGCCATCCGCTAGCCAAC 17 15 1 TTGCGCCACC 0.596035 -99 GGTGCTTGGCCGAAACGTCCAACAGCATGGGAAG 17 83 1 CGACGCCACA 0.645739 -31 TCGAGCCTATCCGGGCGACGATGCGCGCCGCAGC 22 16 1 CCGCGCGAGC 0.878194 -141 CCCTAACAGGGCCCCCGGCCAACCTGTTGGTTGG 22 60 0 GCCCGCCACC 0.791313 -97 TTAGTAACAGCCGATCGGTCAACGAAGACCCTGC 23 23 0 CCACGTCACG 0.803371 -238 AATAGAAACTGGAGACGCCGACCCGCGTTCGCGC 23 62 0 GGGCGCGACC 0.960919 -199 CGCAGCCGTCGTTGGCGGCGAGCACCGGTGACCG 23 138 1 GTGCGCGACA 0.699067 -123 GATCGGCGACGCTACCAACCAACCGGTAGGTTAG 25 138 0 GCACACCACC 0.812405 -60 GGGCCTACTACTGATCGTTGAGCGGATGTTCGCA 26 48 0 CTACGTGACG 0.553426 -139 CCGCAGCGCGCCGGGCATCCGACCGGTACAACCA 28 24 0 CCGCACCGCC 0.542281 -201 GGAAAAATTCCTCGACGGCCACCGTTAGATAAAC 29 90 1 CTGCGCCACG 0.932184 -211 GAAGGCGACTCTGGGCGTCGACCCATAACGAGGC 29 253 0 CTGCGCGACC 0.966109 -48 ACCAGCGATGTGAACCGGCGAGCCGGGTGAGGAG 32 138 1 TGACGCGACC 0.546335 -29 GCACCATCCGGGTGTCGGTGAGCGTGCAACTCAA 33 34 0 GGGCGTGACG 0.670427 -183 CGATATGCGACCGATCGACCAACCGCGGCGCAGC 33 176 1 CCACGCCACC 0.980153 -41 CCCGCACCTGCGTAACATCGACCCA 35 38 1 CGACACGACC 0.707421 -15 GCCCCGGCTACCTGCCGACCAACCGCCCGGTTGG 36 72 1 CCGCGCCACC 0.989472 -64 TGAACAGCGGCCCATCGCCGTGCGACGTAGGCCG 38 104 0 CCACGCGTCG 0.566257 -98 CTGGCCGAGTGCTACCGTCGAACGCGTGCTGTCC 41 17 0 GCACGCGACG 0.961196 -198 TAGCACTCGGCCAGCCGTCGACCCCGATTCGCGC 41 37 1 CCGCGCGACC 0.991442 -178 CGCACTCCTCCAAACATCCAGCCCGGACCGGGC 41 192 0 CCACACCACC 0.863506 -23 GCGACCGGACGCAGGCGGCCAGCAGTATGTCACC 42 31 0 GCGCGCCACA 0.884509 -270 GAGTAGCACGCCAAACTCCCATCCCACCCGGCCA 42 169 1 CCACTCCACC 0.768442 -132 GGTGCACCATCCTTTCGCCGAGCGTGTACCCAGT 42 276 0 CCTCGCGACG 0.732512 -25 GACGCGCATAGGCGGCGCTGATCCCTGACCTGAT 48 124 0 GGGCGTGACC 0.773871 -113 AAAGACGTGCCTAAGCTACCAGCCAGGTCACCGC 48 162 0 CTACTCCACC 0.449511 -75 TCCACTAGCTGTCGACAACCAACGCCAACGGCAA 51 137 0 GTGCACCACG 0.546566 -78 GTGGACGGCTGCTGACGGCCAGTGATAAAGACGC 51 166 1 GCGCGCCATG 0.606076 -49 TTCTAATAGTGCTAACGATCAACCGTCAAGTCGA 57 186 0 GCACGTCACC 0.824723 -86 CCGCCCGATTGCCGCCGGCAACCGACACTGTTGG 58 36 1 GCGCGCAACG 0.641081 -149 TGCCCGGGTACCGGACGGTCACCAAGACTGTAGT 58 120 0 CCGCGTCACA 0.608946 -65 GAAGTCTAATGGGGGCGGCGAGCCTGGTGCGGTG 59 17 0 GGGCGCGACC 0.960919 -92 CGGCGCGGCACCAGACTCCGATCGGATCATCGGG 59 52 0 CCGCTCGACG 0.822299 -57 AACCGCGTCGCCTACCATCGAGCCTC 61 70 1 CCACACGACC 0.886343 -16 GCTCTAGGCAGCGATCGTCGAACGGGGCGCTACC 63 20 0 GCACGCGACG 0.961196 -60 ** * ** *** ** Masking position 6 Map Score: 50.5221 Number of sites scoring better than the average of aligned sites = 16946 Number in coding regions = 15871 Number in noncoding regions = 1075 Number of orfs with sites within 600 bp upstream = 700 Fraction of orfs with sites within 600 bp upstream = 0.112432 Motif number 6 GGCGCTCCCCGATCTGGCGCGCGCAACGAGGT 1 177 1 GACTGGCGGC 0.486228 -105 ACTCCTTGATGCTCAGGCCGGTGCGGTTTGTC 1 236 1 GCCAGGCCGT 0.884817 -46 CTTATCTGCTCCTCAGGTTGGCAGGACAAAGA 2 18 0 CCCAGGTTGC 0.922696 -56 ACCGTCGGCGCCACCGGTTAGCCTGGCGAG 4 9 0 CCCCGGTTGC 0.932313 -78 CGCAACCATGGCCCAGGTCTGGACGTACGCGA 5 46 1 GCCAGGTCGG 0.839664 -56 TACGCGATCACCGCCGCTGTGCGGCGAGGAGA 5 71 1 CCCCGCTGGC 0.669626 -31 CGCTTCGGGGCCGCCGGTTAGGTCTCGG 6 7 0 CCCCGGTTGG 0.569681 -82 GCTGGCTTCGCCACAGTTCGGTGCCGTAGCTG 9 38 1 CCCAGTTCGT 0.13464 -263 AACGCCACATGCTGGCAGGCTATCGG 10 5 1 CCCATGCTGC 0.367141 -52 CTGGCACACCCTACGGCCCGCTAGGCTATCG 15 15 0 CCACGGCCGC 0.523047 -21 TCCAAGCTAACAACCGGTGGGTCGGTTATTAA 17 50 0 CACCGGTGGT 0.646915 -64 CCTCGGATCACGTCCGGCCAGCCGCGGCACGG 18 134 0 CGCCGGCCGC 0.810049 -61 TTCCCCGCCGCCACCGGCTTGCACAGGACAAC 21 183 1 CCCCGGCTGC 0.926468 -23 CTTGCCCAACCAACAGGTTGGCCGGGGGCCCT 22 55 1 CACAGGTTGC 0.787886 -102 TTGGCGGCGAGCACCGGTGACCGTGACTTTGG 23 149 1 GCCCGGTGCC 0.526606 -112 TTGCCGGCCCCAGGAGGTCAGCGCC 25 4 0 CAGAGGTCGC 0.562266 -194 GAGTCGAAGCGGCCCGGTCTGCGCCGTCCATT 25 73 0 GGCCGGTCGC 0.830649 -125 GCCCCCGCGGGCACCGCTGGGCGAGCCACGAT 26 126 1 GCCCGCTGGC 0.667482 -61 GGGTAACCTCGCACAGGTCAGCCGTTCACGTC 28 188 1 GCCAGGTCGC 0.981334 -37 CGGAGGCGATGCGCAGGTCAGTTTATCTAACG 29 112 0 GCCAGGTCGT 0.893587 -189 ACTGTGGAAATAGCAGGTCAGCATGGTGGCGT 29 210 1 TACAGGTCGC 0.732945 -91 ACTGGACTGTTACCAGGTGCGCGGCCCGCGGG 32 56 0 TACAGGTGGC 0.637033 -111 CCAGCGATGTGAACCGGCGAGCCGGGTGAGGA 32 139 1 GACCGGCGGC 0.91994 -28 CCCGGATGGTGCACCAGTGAGCTGGGGTGACC 33 56 1 GCCCAGTGGC 0.681982 -161 AGAATTTTCTTCCCCGGAGGGCATCC 36 120 1 TCCCGGAGGC 0.577239 -16 TCGATCACCGTAACAGGACCGTTAGACTGTCC 39 25 0 TACAGGACGT 0.0811869 -22 CCCGCCGGACAGCACGCGTTCGA 41 2 1 CCCCGGACGC 0.926416 -213 ATGCCAGACTCCGCCGGCGGGCCGTTGCAGAC 41 86 0 CCCCGGCGGC 0.972301 -129 CGGTTTGTAGGACCAGGCCTGCCGCCAGCCTG 41 124 1 GACAGGCCGC 0.939667 -91 CTTAGCCCTCGATCAGGCTGGCGGCAGGCCTG 41 137 0 GACAGGCTGC 0.781412 -78 TGACTCCGGTCACCAGGAGCGTGCCGCTGGCC 42 69 1 CACAGGAGGT 0.249911 -232 CCCGCGGGGAGATCTGGCCAGCGGCACGCTCC 42 84 0 GACTGGCCGC 0.596765 -217 CGTAATAACGGCTCATGCCAGCAGTCCTACCA 42 203 0 GCCATGCCGC 0.726713 -98 GTCTGTCGCCGCCGCGGCCAGCATCTCCGGGT 48 83 0 GCGCGGCCGC 0.820919 -154 ACCTGATGCCGCCCAAGTCTGTCGCCGCCGCG 48 99 0 GCCAAGTCGT 0.308488 -138 ACTTGGGCGGCATCAGGTCAGGGATCAGCGCC 48 113 1 CACAGGTCGG 0.608672 -124 TCGAGACGCGGCACAGGTCGGCACC 48 222 1 GCCAGGTCGC 0.981334 -15 GGGCCGGAACGCACAAGTGGGCGGGTAGCGAG 50 200 1 GCCAAGTGGC 0.648039 -22 CGTCTTGTCCTCTCAGGTCCGC 52 1 0 TCCAGGTCGC 0.898177 -24 GGTAGCGAACCCGCAGGAGTGCA 55 42 1 CCCAGGAGGC 0.874586 -13 AATTGTCGACGCGGAGGTCTGCAG 57 258 1 GCGAGGTCGC 0.811931 -14 ATCAGCAGTGCCCCGGGTGGGTCTTGACGTGC 58 82 1 CCCGGGTGGT 0.289601 -103 TCGCACACCGCACCAGGCTCGCCGCCCCCATT 59 12 1 CACAGGCTGC 0.772612 -97 GCCAACACCTGCACCTGTCGGCACAGGTA 59 90 1 GCCCTGTCGC 0.770321 -19 ** ****** ** Masking position 11 Map Score: 52.187 Number of sites scoring better than the average of aligned sites = 14626 Number in coding regions = 13622 Number in noncoding regions = 1004 Number of orfs with sites within 600 bp upstream = 684 Fraction of orfs with sites within 600 bp upstream = 0.109862 Motif number 7 CGATCTGGCGCGCGCAACGAGGTGCGCACTA 1 186 1 CGCGCACGAG 0.756133 -96 TGGCGCCGACGGTGAGTCAGGATGCACTCTC 4 28 1 GGTGAGCAGG 0.358269 -59 TGTGCTGCAGCGCGACGCGGGTAGTGCAGCC 4 64 1 CGCGACCGGG 0.959546 -23 CTCTGGTTCTCGTGATGCCGGTG 7 3 0 CGTGATCCGG 0.784486 -40 ACCGAACTGTGGCGAAGCCAGCATCAACGAC 9 29 0 GGCGAACCAG 0.930538 -272 CCTTCTCGTCGGCGTGTCGAGGGACTTATGC 9 237 1 GGCGTGCGAG 0.822862 -64 CCAAGCCGAACGCGAAACGAGAACGTGTTCC 14 15 0 CGCGAACGAG 0.968243 -84 GCGGATGGCCGGCGAAATGGGTGAGAACAC 17 10 0 GGCGAATGGG 0.768895 -104 CCCGGAGCAGCGCGTAGTCAGCGCTCGTGAA 18 39 0 CGCGTATCAG 0.667073 -156 GCTGGCCGGACGTGATCCGAGGGTGTGGGTC 18 144 1 CGTGATCGAG 0.663508 -51 CTAACGTTAGCGCGAACGCGGGTCGGCGTCT 23 53 1 CGCGAAGCGG 0.737188 -208 AACGCGGGTCGGCGTCTCCAGTTTCTATTTC 23 67 1 GGCGTCCCAG 0.730252 -194 CGTTTCGCTACGGGACGCCGGGTGCTTTGCC 25 31 0 CGGGACCCGG 0.901253 -167 CGATCTCCGTCGCGAAACAGGGCAGTGCTAA 25 111 1 CGCGAACAGG 0.850393 -87 CAACGCTGGCCGGGAACCCGGGCCTACTACT 26 70 0 CGGGAACCGG 0.95611 -117 TAAGGTTTATCGTGTACCCGGATGACAACGC 26 95 0 CGTGTACCGG 0.896353 -92 AAACTCTTCAGGGGAGGCGAGGCCC 26 172 1 GGGGAGCGAG 0.786506 -15 CGGTTTTGTACGTGTGTCGAGGATCACACAA 29 12 1 CGTGTGCGAG 0.77102 -289 GATGTGAACCGGCGAGCCGGGTGAGGAGGAT 32 144 1 GGCGAGCGGG 0.946769 -23 GTTGTCCGGCCGGGAACCCGGCAGGTCTCGG 33 92 0 CGGGAACCGG 0.95611 -125 TAACAGCTTTCGCGGGACCGGGGGTCACAAC 33 129 0 CGCGGGCCGG 0.804563 -88 CGCCACGGCGAATTCGGTGCACGCAAG 36 7 1 GGCGAATCGG 0.768895 -129 TTTCCGCCCGCGCGAATCGGGGTCGACGGCT 41 49 0 CGCGAACGGG 0.981926 -166 TTACGCCGAGCGTGAACTCAGTGCAAGAACG 42 230 1 CGTGAATCAG 0.566609 -71 TTTCGCCGAGCGTGTACCCAGTGCGATTTTT 42 267 0 CGTGTACCAG 0.824099 -34 TAACCACTGACGCGTTACGAGCCCAG 47 11 1 CGCGTTCGAG 0.749872 -16 GGTTTGCATTGGTGAACCCGGAGATGCTGGC 48 68 1 GGTGAACCGG 0.886098 -169 CGACCTGTGCCGCGTCTCGAGTTCTCTGGCA 48 211 0 CGCGTCCGAG 0.859328 -26 CACAAGTGGGCGGGTAGCGAG 50 211 1 CGGGTACGAG 0.850539 -11 TCTCGGCTGTCGGGAGGTGGGAAATCTACAC 57 128 0 CGGGAGTGGG 0.678414 -144 ****** **** Masking position 4 Map Score: 38.9952 Number of sites scoring better than the average of aligned sites = 5693 Number in coding regions = 5218 Number in noncoding regions = 475 Number of orfs with sites within 600 bp upstream = 382 Fraction of orfs with sites within 600 bp upstream = 0.0613556 Motif number 8 AGGATGCACTCTCGAAGGTGTGCTGCAGCG 4 46 1 CTCGAAGGTG 0.858073 -41 GCTGCGGTTAGTCGAACGAGGATCGGGATG 11 65 1 GTCGAACGAG 0.830344 -28 GAACGCGAAACGAGAACGTGTTCCATTA 14 9 0 CGAGAACGTG 0.929284 -90 CCCTACCCAAGCCGAACGCGAAACGAGAAC 14 22 0 GCCGAACGCG 0.845092 -77 TCCATCATGGCTAGTACGCGACAACACCCG 21 21 0 CTAGTACGCG 0.822064 -185 CTAACGTTAGCGCGAACGCGGGTCGGCGTC 23 53 1 CGCGAACGCG 0.80707 -208 GACCAGCAATCTAGATCGTGGCTCGCCCAG 26 142 0 CTAGATCGTG 0.803974 -45 CCCGGCACGACTCGAACGTGCGACCTAGGG 29 177 0 CTCGAACGTG 0.982179 -124 GAGTGCTACCGTCGAACGCGTGCTGTCCGG 41 15 0 GTCGAACGCG 0.969155 -200 GATTCAGAGACTAGAACGTGTTACAACCGG 51 94 1 CTAGAACGTG 0.976574 -121 CAAACTAGAACGTGTTACATTTCT 53 5 1 CTAGAACGTG 0.976574 -69 GGGGCCAGGCTAGAACACGTTTCATTACT 54 10 1 CTAGAACACG 0.74653 -102 TTCTTGCCCACTAGAACGTGTTCTAATAGT 57 210 0 CTAGAACGTG 0.976574 -62 GGCAGCGATCGTCGAACGGGGCGCTACCGC 63 18 0 GTCGAACGGG 0.879586 -62 ********** Masking position 4 Map Score: 16.8159 Number of sites scoring better than the average of aligned sites = 573 Number in coding regions = 525 Number in noncoding regions = 48 Number of orfs with sites within 600 bp upstream = 54 Fraction of orfs with sites within 600 bp upstream = 0.00867331 Motif number 9 CCGTCGCGCTCATCCGGAGCACACGGCGGA 1 11 0 CATCCGGAGC 0.803782 -271 CAAACCGCACCGGCCTGAGCATCAAGGAGT 1 236 0 CGGCCTGAGC 0.570335 -46 TTTGTCCTGCCAACCTGAGGAGCAGATAAG 2 20 1 CAACCTGAGG 0.603799 -54 CTCGCCAGGCTAACCGGTGGCGCCGACGGT 4 11 1 TAACCGGTGG 0.649585 -76 GGCGCTCATCCTGTGCTCCCTCTGGT 7 27 0 CATCCTGTGC 0.897912 -16 GCCTCATACTCGTCCGGTGTTTCGTG 13 7 0 CGTCCGGTGT 0.6402 -24 TCCAAGCTAACAACCGGTGGGTCGGTTATT 17 52 0 CAACCGGTGG 0.834688 -62 CGGACGGCAGCATCCCGTGCCGCGGCTGGC 18 120 1 CATCCCGTGC 0.623589 -75 GGTTGTCCTGTGCAAGCCGGTGG 21 193 0 TGTCCTGTGC 0.716616 -13 AAAGTCACGGTCACCGGTGCTCGCCGCCAA 23 149 0 TCACCGGTGC 0.866055 -112 CGCTACCAACCAACCGGTAGGTTAGCACTG 25 133 0 CAACCGGTAG 0.649585 -65 GCTATGGCTACGAGCTGTGCGAACATCCGC 26 31 1 CGAGCTGTGC 0.839558 -156 CGTGGCTCGCCCAGCGGTGCCCGCGGGGGC 26 126 0 CCAGCGGTGC 0.834206 -61 GCCGGGCATCCGACCGGTACAACCAGGAAG 28 19 0 CGACCGGTAC 0.935357 -206 CGTGAACGGCTGACCTGTGCGAGGTTACCC 28 188 0 TGACCTGTGC 0.874007 -37 CTTGCTCTATCCACCTGAGCTACGGAGGCG 29 136 0 CCACCTGAGC 0.84307 -165 GCCCAGTGTGCCACCGTTGCCGTCCCGGAC 38 70 0 CCACCGTTGC 0.639175 -132 AGATGGGGCCCAACCGGTACGGCCCCA 40 8 0 CAACCGGTAC 0.86822 -30 GGTGCCGACCTGTGCCGCGTCTCGA 48 222 0 CGACCTGTGC 0.981404 -15 CGCTACCCGCCCACTTGTGCGTTCCGGCCC 50 200 0 CCACTTGTGC 0.482281 -22 GAACTAGCAGCGACCGGGGGGATGGTCAGG 51 25 0 CGACCGGGGG 0.758615 -190 GCCGAGACGACGACATGTGCTGGAGTTATT 57 152 1 CGACATGTGC 0.779829 -120 TCTTGGTGACCGTCCGGTACCCGGGCATGG 58 127 1 CGTCCGGTAC 0.840716 -58 TACCTGTGCCGACAGGTGCAGGTGTTGGC 59 90 0 CGACAGGTGC 0.880329 -19 ********** Masking position 7 Map Score: 20.3346 Number of sites scoring better than the average of aligned sites = 6128 Number in coding regions = 5705 Number in noncoding regions = 423 Number of orfs with sites within 600 bp upstream = 380 Fraction of orfs with sites within 600 bp upstream = 0.0610344 Motif number 10 CCTGACTCACCGTCGGCGCCACCGGTTAGCCTGG 4 15 0 CGTCCGCCAG 0.511541 -72 GGACGTACGCGATCACCGCCGCTGTGCGGCGAGG 5 66 1 GATCCGCCGG 0.818956 -36 TTCTATTGCTGGTTCAACCGGGTGACTAGGATCG 8 59 1 GGTTACCGGG 0.624837 -36 ATCGCAATGCGGTTGTCGTGGAAGCTCCACAAAC 9 115 1 GGTTCGTGGG 0.817202 -186 TCGGACAGGGGGTCAATACGGAGGGCGACAAAAG 10 33 1 GGTCTACGGG 0.460278 -24 CTGCGCTCGGCATCGTCGCCGGCGGTCATGGCGT 14 54 0 CATCCGCCGG 0.712908 -45 CGAGCGGTTCGGTCAACGACGAGGGTGACGCTAC 16 58 0 GGTCCGACGG 0.873858 -37 GAGCCGACAGCGTCCTAGCGGGAGACGCTTGGAT 21 97 0 CGTCAGCGGG 0.978394 -109 GCTAGGACGCTGTCGGCTCGGTCGCCTTGCGAGC 21 112 1 TGTCCTCGGG 0.70585 -94 CTGTTACTAACGTTAGCGCGAACGCGGGTCGGCG 23 47 1 CGTTCGCGAG 0.540134 -214 GCTGAGGCAGGGTCGGGGCCGCCGTTTTTCCATG 23 102 0 GGTCGGCCGG 0.775764 -159 CCTGCCTCAGCGTCGCAGCCGTCGTTGGCGGCGA 23 125 1 CGTCAGCCGG 0.928032 -136 CTTCGTGATTCGTCAGCGAGGAGGCGGCG 23 242 1 CGTCCGAGGG 0.903676 -19 GAAGCGGCCCGGTCTGCGCCGTCCATTGGAGTAG 25 66 0 GGTCCGCCGC 0.736733 -132 CTCGCCCAGCGGTGCCCGCGGGGGCTAAGGTTTA 26 117 0 GGTGCGCGGG 0.953526 -70 AACCCTTCCTGGTTGTACCGGTCGGATGCCCGGC 28 15 1 GGTTACCGGG 0.624837 -210 GGAAATAGCAGGTCAGCATGGTGGCGTGGCTTGA 29 215 1 GGTCCATGGG 0.706544 -86 AGTGAGCTGGGGTGACCGCGGCCGAGACCTGCCG 33 71 1 GGTGCGCGGG 0.953526 -146 CGGGACCGGGGGTCACAACGGGCGAGTTGTCCGG 33 114 0 GGTCAACGGG 0.880422 -103 GTGGCGTTACGCTCGCAGCGGCTGGCGCGCCCCG 36 44 1 GCTCAGCGGG 0.72353 -92 CAGCTGTTGCGGTCTGAGTGGTCGGTAGTTGTCA 38 154 1 GGTCAGTGGG 0.872326 -48 CGTCGACCCCGATTCGCGCGGGCGGAAAGCGTTG 41 52 1 GATTCGCGGG 0.74314 -163 ATCTCCCCGCGGGCCGCGCGGGATAAGCCGCGGA 42 103 1 GGGCCGCGGT 0.38207 -198 TACTGATCGCGGTCCTAGCGGTATTTCTTGCTCC 42 134 0 GGTCAGCGGT 0.768173 -167 CGGCAGCCTCGGTCATCGGGGTGATAGCGGACCA 43 55 0 GGTCCGGGGA 0.411568 -25 ACGCTCCGACCGTCAACGAGGAGGACGGCCATGT 48 34 1 CGTCCGAGGG 0.933603 -203 CGCCCAAGTCTGTCGCCGCCGCGGCCAGCATCTC 48 88 0 TGTCCGCCGG 0.876108 -149 CTACCAGCCAGGTCACCGCAGAGGACGCGCATAG 48 147 0 GGTCCGCAGG 0.878812 -90 CCGCACCCAACGTCTCCGCGGTCGCCACGTGGAT 50 60 0 CGTCCGCGGG 0.992121 -162 ATCCAGCGACCGTTTCCTCGGATGTAGCAGGGCC 51 63 0 CGTTCTCGGG 0.74964 -152 GCAACCCGGCCGTCTTCCCGGTTGTAACACGTTC 51 107 0 CGTCCCCGGG 0.950761 -108 GGTTGCCACGGCCGCCACCTCTTT 53 60 0 GGTTCACGGG 0.827964 -14 CAGCACATGTCGTCGTCTCGGCTGTCGGGAGGTG 57 140 0 CGTCCTCGGG 0.937379 -132 TATTAGAACACGTTCTAGTGGGCAAGAACGCTCC 57 212 1 CGTTAGTGGA 0.0493156 -60 TATGTGAAATTGTCGACGCGGAGGTCTGCAG 57 251 1 TGTCCGCGGG 0.951135 -21 GCCGGTCAGGGTCGAATCGGGCGGGTACCCTCT 60 10 1 GGTCATCGGG 0.880387 -30 CGTCAAAGAGGGTACCCGCCCGAT 60 26 0 CGTCAGAGGA 0.216883 -14 **** ***** * Masking position 3 Map Score: 47.8718 Number of sites scoring better than the average of aligned sites = 12373 Number in coding regions = 11722 Number in noncoding regions = 651 Number of orfs with sites within 600 bp upstream = 501 Fraction of orfs with sites within 600 bp upstream = 0.080469 Motif number 11 GCGCTCATCCGGAGCACACGGCGGA 1 6 0 GGAGCACACG 0.489035 -276 GCCAGATCGGGGAGCGCCCTCGTTGTGTAA 1 165 0 GGAGCGCCCT 0.947705 -117 TCGACAAACCGCACCGGCCTGAGCATCAAG 1 240 0 GCACCGGCCT 0.762578 -42 GCGTCGCGCTGCAGCACACCTTCGAGAGTG 4 52 0 GCAGCACACC 0.723823 -35 CGGGCTGCACTACCCGCGTCGCGCTG 4 71 0 GCACTACCCG 0.767714 -16 CGCAGCCCCCTACTCATAGGG 12 33 0 GCAGCCCCCT 0.910409 -11 AATACGGACGGCAGCATCCCGTGCCGCGGC 18 116 1 GCAGCATCCC 0.88254 -79 ATGATGGAGCGCAGCGCCGGAACAGATGCG 21 43 1 GCAGCGCCGG 0.836273 -163 CGGTAGGTTAGCACTGCCCTGTTTCGCGAC 25 119 0 GCACTGCCCT 0.8145 -79 GGGCGCCACCGCAGCGCGCCGGGCATCCGA 28 36 0 GCAGCGCGCC 0.823787 -189 GCTCACTGGTGCACCATCCGGGTGTCGGTG 33 48 0 GCACCATCCG 0.868628 -169 CGCAGCGGCTGGCGCGCCCCGGCTACCTGC 36 57 1 GGCGCGCCCC 0.676415 -79 TGGTGCACCATCCTTTCGCCGAGC 42 287 0 GCACCATCCT 0.804377 -14 GGGTGATAGCGGACCACCCTATCTTACTCC 43 41 0 GGACCACCCT 0.867677 -39 GAGTTCTCTGGCAGCACCCGGTGTCGATAA 48 194 0 GCAGCACCCG 0.977051 -43 GGCACCCTCCTTACCCTGACC 51 2 1 GCACCCTCCT 0.612122 -213 GGTGGAACTAGCAGCGACCGGGGGGATGGT 51 29 0 GCAGCGACCG 0.818534 -186 TGCTTTGTTAGGAGCGTCCG 56 1 0 GGAGCGTCCG 0.854252 -47 CGCTCCCGACGCACCACCTCGCGCGGTCAT 57 15 0 GCACCACCTC 0.522475 -257 GTTTGCAAACGAACCGCCCGGAAGAGGAGC 57 84 0 GAACCGCCCG 0.777022 -188 GACCAAATCAGCAGTGCCCCGGGTGGGTCT 58 76 1 GCAGTGCCCC 0.889098 -109 CCCCGCATCCTCACCGCCCTTAACCGCGTC 61 49 1 TCACCGCCCT 0.612574 -37 TCCGTTAGCGGTAGCGCCCCGTTCGACGAT 63 11 1 GTAGCGCCCC 0.79836 -69 ********** Masking position 3 Map Score: 18.8251 Number of sites scoring better than the average of aligned sites = 6069 Number in coding regions = 5607 Number in noncoding regions = 462 Number of orfs with sites within 600 bp upstream = 384 Fraction of orfs with sites within 600 bp upstream = 0.0616768 Motif number 12 CCCAGAGTTGGCCAGCGCTATCCGACGA 5 7 1 GTTGGCCCGC 0.95994 -95 TCGGTACAGCGATGGCTTTGGCAGGCTGCGGT 11 41 1 GATGGCTGGC 0.8721 -52 CGCCGGCGACGATGCCGAGCGCAGCGATGAGG 14 64 1 GATGCCGCGC 0.616872 -35 GGCCGCAATCGGTGTCTTGCGGGGCCGCAGTG 16 24 1 GGTGTCTCGG 0.865433 -71 GGTTATTAACGTTGGCTAGCGGATGGCCGGCG 17 27 0 GTTGGCTCGG 0.899102 -87 GTCCGTATTCGTGGGCCCCGGCGCATAAAGTG 18 93 0 GTGGGCCGGC 0.744967 -102 GTCAACGGTAGGTGCCGCGGGGCTTGAAG 19 8 0 GGTGCCGGGG 0.887993 -24 TGTGCAAGCCGGTGGCGGCGGGGAATCCCGAT 21 176 0 GGTGGCGGGG 0.957012 -30 CAACCAACAGGTTGGCCGGGGGCCCTGTTAGG 22 61 1 GTTGGCCGGG 0.952405 -96 ATCCTCTCTTGATGGCTATGGCTACGAGCTGT 26 17 1 GATGGCTGGC 0.8721 -170 CCCGGCCAGCGTTGTCATCCGGGTACACGATA 26 87 1 GTTGTCACGG 0.510925 -100 CTCGCCCAGCGGTGCCCGCGGGGGCTAAGGTT 26 119 0 GGTGCCCGGG 0.964092 -68 GTACCGGTCGGATGCCCGGCGCGCTGCGGTGG 28 29 1 GATGCCCCGC 0.845028 -196 CTATGGACATGTTGGCTAAGGGACGGGTAACC 28 164 1 GTTGGCTGGG 0.899102 -61 TTTATCTAACGGTGGCCGTCGAGGAATTTTTC 29 91 0 GGTGGCCCGA 0.799405 -210 TCCTCCGCCTGGTGCCTACCGCATGTCTGACT 31 91 0 GGTGCCTCGC 0.934716 -25 AGTGAGCTGGGGTGACCGCGGCCGAGACCTGC 33 71 1 GGTGACCGGC 0.782154 -146 TTGGTCGGCAGGTAGCCGGGGCGCGCCAGCCG 36 62 0 GGTAGCCGGC 0.854492 -74 GGATGCCCTCCGGGGAAGAAAAT 36 123 0 GATGCCCCGG 0.819933 -13 GGACGGCAACGGTGGCACACTGGGCTACACGG 38 75 1 GGTGGCACTG 0.332038 -127 GTGGTCGGTAGTTGTCAGTGGCGTGCTGTAGG 38 171 1 GTTGTCAGGC 0.555753 -31 TCGAACGCGTGCTGTCCGGCGGG 41 2 0 GCTGTCCCGG 0.622377 -213 CGCGTTCGACGGTAGCACTCGGCCAGCCGTCG 41 25 1 GGTAGCACGG 0.572018 -190 ACCCGGAGATGCTGGCCGCGGCGGCGACAGAC 48 83 1 GCTGGCCGGC 0.911521 -154 TGACCTGGCTGGTAGCTTAGGCACGTCTTTAT 48 166 1 GGTAGCTGGC 0.723382 -71 TCGAGGTGGCTCACGGTACGGGACCT 50 5 1 GGTGGCTCGG 0.971077 -217 GATCGCGTCGAGTGTCTTGGGCCGCCAGGTCC 50 31 0 AGTGTCTGGC 0.157046 -191 ACAGGAAGATGGCGGCTGTCGCACAATCACGT 50 118 1 GGCGGCTCGC 0.877142 -104 GTGGCCTGGCGGTGGCATCCGCTGACGGAGGG 50 148 1 GGTGGCACGC 0.960948 -74 CGCTGACGGAGGGGTCCCGCGGTTACAATTTC 50 167 1 GGGGTCCCGG 0.63776 -55 AGACGGCCGGGTTGCCGTTGGCGTTGGTTGTC 51 126 1 GTTGCCGGGC 0.715889 -89 AGAAAGAGGTGGCGGCCGTGGCAACC 53 58 1 GGCGGCCGGC 0.941288 -16 GTCGGTTGCCGGCGGCAATCGGGCGGGTACAC 58 30 0 GGCGGCACGG 0.784895 -155 TCGCCGAGTCGGTGGCCACGGCACTT 61 5 0 GGTGGCCGGC 0.989045 -81 ******* *** Masking position 6 Map Score: 50.3629 Number of sites scoring better than the average of aligned sites = 12101 Number in coding regions = 11625 Number in noncoding regions = 476 Number of orfs with sites within 600 bp upstream = 399 Fraction of orfs with sites within 600 bp upstream = 0.0640861 Motif number 13 AACGAGGGCGCTCCCCGATCTGGCGCGCGC 1 171 1 CTCCCCGATC 0.47024 -111 GGATAGTGCGCACCTCGTTGCGCGCGCCAG 1 190 0 CACCTCGTTG 0.918388 -92 GTGAACTGGACTCCTTGATGCTCAGGCCGG 1 227 1 CTCCTTGATG 0.689874 -55 CGTTTCGGATCTCCTCGCCGCACAGCGGCG 5 82 0 CTCCTCGCCG 0.859319 -20 CGATCCTAGTCACCCGGTTGAACCAGCAAT 8 63 0 CACCCGGTTG 0.4728 -32 CGGCGATCGGCACGTCGTTGATGCTGGCTT 9 16 1 CACGTCGTTG 0.702682 -285 GCCGCTCCTCCTCATCGCTGCGCTCGGCAT 14 75 0 CTCATCGCTG 0.8574 -24 CTGGCACACCCTACGGCCCGCTAGGC 15 20 0 CACCCTACGG 0.27543 -16 TAGCGTCACCCTCGTCGTTGACCGAACCGC 16 59 1 CTCGTCGTTG 0.791032 -36 TAAAGTGTTTCTCCTTGTGGGATACGTTTC 18 70 0 CTCCTTGTGG 0.776146 -125 CGCCGCCTCCTCGCTGACGAATCACG 23 245 0 CTCCTCGCTG 0.97827 -16 GTCCGCTCCTTACTGGACGTGAACG 28 210 0 CTCCTTACTG 0.475136 -15 CAAGCCACGCCACCATGCTGACCTGCTATT 29 218 0 CACCATGCTG 0.589614 -83 GGTGCCAGGCCTACCCGCGGGCCGCGCACC 32 43 1 CTACCCGCGG 0.546303 -124 CTCGCCGGTTCACATCGCTGGTAAAGCCTA 32 130 0 CACATCGCTG 0.789648 -37 CGAACTCAATGCTGCCACGACCGC 35 5 1 CTCAATGCTG 0.235187 -48 TGCACGCAAGCTCGCCGTGGCGTTACGCTC 36 28 1 CTCGCCGTGG 0.717989 -108 CTGGCCAGATCTCCCCGCGGGCCGCGCGGG 42 95 1 CTCCCCGCGG 0.96803 -206 GGTCCGCTATCACCCCGATGACCGAGGCTG 43 56 1 CACCCCGATG 0.829232 -24 CATGGCCGTCCTCCTCGTTGACGGTCGGAG 48 37 0 CTCCTCGTTG 0.947438 -200 CCCGACGCACCACCTCGCGCGGTCATGAAA 57 11 0 CACCTCGCGC 0.693616 -261 ********** Masking position 1 Map Score: 11.2957 Number of sites scoring better than the average of aligned sites = 5538 Number in coding regions = 5168 Number in noncoding regions = 370 Number of orfs with sites within 600 bp upstream = 309 Fraction of orfs with sites within 600 bp upstream = 0.0496306 Motif number 14 GGTTACCTAACTTACTTAGGTAGCATGGCATGC 6 65 1 CTTACTGTAG 0.895434 -24 TCGAATAGCTCGTGCTACGTTAGTGACGATTAA 31 48 0 CGTGCTGTAG 0.959784 -68 CAGCCGCCATCTTCCTGTGGTAGGTGATCATCG 50 103 0 CTTCCTGTAG 0.94553 -119 CAAGCACTTGCTTGGTACGCTAGCACA 55 5 0 CTTGGTGTAG 0.970227 -50 CAAGCAAGTGCTTGCTTAGGTAGCGAACCCGCA 55 24 1 CTTGCTGTAG 0.95759 -31 CTACCAAGCACTTGCTTTGTTAGGAGCGTCCG 56 10 0 CTTGCTGTAG 0.986381 -38 AAAGCAAGTGCTTGGTAGGTTAGCCTACAGGGC 56 25 1 CTTGGTGTAG 0.970356 -23 ****** * *** Masking position 12 Map Score: 4.90076 Number of sites scoring better than the average of aligned sites = 4 Number in coding regions = 2 Number in noncoding regions = 2 Number of orfs with sites within 600 bp upstream = 4 Fraction of orfs with sites within 600 bp upstream = 0.000642467 Motif number 15 GATACCACTGGCCGTTGCGGTCACGGGATT 9 71 1 GCCGTTGCGG 0.800082 -230 CATCTGTTCCGGCGCTGCGCTCCATCATGG 21 41 0 GGCGCTGCGC 0.979887 -165 TTGCATTTTGGCCGATACCCGCATCTGTTC 21 62 0 GCCGATACCC 0.881987 -144 CTATCCGGGCGACGATGCGCGCCGCAGCGA 22 22 1 GACGATGCGC 0.956662 -135 CTTCAGGGGAGGCGAGGCCC 26 177 1 GGCGAGGCCC 0.788099 -10 CATGTCCATAGCCAATACGCACATGAGAGT 28 145 0 GCCAATACGC 0.732686 -80 GAGCTACGGAGGCGATGCGCAGGTCAGTTT 29 120 0 GGCGATGCGC 0.98974 -181 ACCCTCTCGTACCGCTGCGCCGCGGTTGGT 33 193 0 ACCGCTGCGC 0.865443 -24 AGCTCGCCGTGGCGTTACGCTCGCAGCGGC 36 36 1 GGCGTTACGC 0.921627 -100 GGGCGCGCCAGCCGCTGCGAGCGTAACGCC 36 46 0 GCCGCTGCGA 0.914735 -90 TACGTCGCACGGCGATGGGCCGCTGTTCAA 38 109 1 GGCGATGGGC 0.882848 -93 GCGGCACTGCCGTTGCGATAGTCTCCGG 46 9 1 GCCGTTGCGA 0.872167 -22 TGCCGCCGCGGGCGATACGCTCCGACCGTC 48 18 1 GGCGATACGC 0.973406 -219 GATCAGCGCCGCCTATGCGCGTCCTCTGCG 48 135 1 GCCTATGCGC 0.877899 -102 TTCGTTTGCAAACGATACGCATGCTGTGTG 57 101 1 AACGATACGC 0.455311 -171 CCTCCCGACAGCCGAGACGACGACATGTGC 57 142 1 GCCGAGACGA 0.668208 -130 ********** Masking position 3 Map Score: 15.4284 Number of sites scoring better than the average of aligned sites = 5171 Number in coding regions = 4818 Number in noncoding regions = 353 Number of orfs with sites within 600 bp upstream = 302 Fraction of orfs with sites within 600 bp upstream = 0.0485063