AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00460_mtub_reg_100.orf -o00460_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 glyA2 300 glyA2 #2 lpqI 300 lpqI #3 ggtA 50 ggtA #4 Rv0774c 28 hypothetical protein Rv0774c #5 glyA 300 glyA #6 ansA 51 ansA #7 amiA2 61 amiA2 #8 nirA 300 nirA #9 ggtB 36 ggtB #10 rpsB 283 rpsB #11 gatC 84 gatC #12 Rv3174 92 hypothetical protein Rv3174 Motif number 1 ********** No masking Map Score: -3.91266e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 2 ACAGGGACGGTCGCACCGACCGTGCCTGAC 1 16 1 TCGCACCGAC 0.744128 -285 AAGGTGTAGAGCGGCGCCATGATGCGACGC 1 48 1 GCGGCGCCAT 0.777931 -253 CTGAGAGTCTGCGGCGTCGCATCATGGCGC 1 61 0 GCGGCGTCGC 0.632516 -240 CGCAACCAGCCCGGCGCGATCCGGGCTCGT 1 114 1 CCGGCGCGAT 0.9395 -187 CCGGCGCGATCCGGGCTCGTCGAAACCGGA 1 124 1 CCGGGCTCGT 0.512187 -177 CTCGTCGAAACCGGAGTTGGCCCTTGTCTG 1 139 1 CCGGAGTTGG 0.82412 -162 GTTGGCGACCTCGCCGTGGCCGAAACGATG 1 186 1 TCGCCGTGGC 0.892996 -115 AACGATGTCGCGGCCGCCGGATGCCCATTT 1 209 1 CGGCCGCCGG 0.986686 -92 CCATTTGGCCGGGCAGCCGATTGCTCCGGG 1 233 1 GGGCAGCCGA 0.882095 -68 ACACCCTTGACCGCCCCCGAGTACGCCGAA 1 264 1 CCGCCCCCGA 0.847389 -37 GCCGAACAGACCGGACTGAGCTG 1 288 1 CCGGACTGAG 0.692364 -13 CGGGTCGCGGGGCTAGCTACG 2 2 1 GGGTCGCGGG 0.885985 -299 AGTACGGTAACCGTAGCTAGCCCCGCGACC 2 13 0 CCGTAGCTAG 0.566119 -288 CAGTGCTCAACCGGGTCGAGTACGGTAACC 2 31 0 CCGGGTCGAG 0.873865 -270 TGACGACGGATCGCCCCCGGGGAGTGGCGG 2 62 1 TCGCCCCCGG 0.857789 -239 GCCGCGATCTTCGGAGTGACCCTGATGGTG 2 107 0 TCGGAGTGAC 0.539186 -194 CTGTTGCTGGGCGCGGCCGCGATCTTCGGA 2 122 0 GCGCGGCCGC 0.85841 -179 ATCGTCGCGCCCGCCGCCGCAAGCGTGGTG 2 158 0 CCGCCGCCGC 0.703513 -143 GCCTCTCAAGCCGCACCCACAGCCGTCGAG 2 206 0 CCGCACCCAC 0.937841 -95 GCTCCGGGTTGGGGGGCCAGGCCCACGCTT 2 253 0 GGGGGGCCAG 0.892415 -48 GCGGCGTGAGCACGCCGTTT 3 1 1 GCGGCGTGAG 0.880768 -50 GCGCGGCCAAGCGTAGGGGA 3 41 0 GCGCGGCCAA 0.852466 -10 TAGCTGGGCACTGGGGCCAGGGCGCGGTGT 5 31 1 CTGGGGCCAG 0.504223 -270 ACAGCATCAACCGGCGTCAGCGTGCGAAAT 5 90 0 CCGGCGTCAG 0.780023 -211 GTGACCTACGTGGCAGCTGGGGCACTAGTG 5 150 1 TGGCAGCTGG 0.784618 -151 GCACCGCAAACGGCAGCCACTAGTGCCCCA 5 167 0 CGGCAGCCAC 0.961423 -134 GTAATCAGCCCGGGAGCGGCTCGCTGGATA 5 234 1 CGGGAGCGGC 0.981797 -67 GCAGCAGTCACGGGCGCCAGTGTATCCAGC 5 256 0 CGGGCGCCAG 0.847693 -45 GCGGGCCATATCGGCCCTAGGGGATGATGA 6 15 0 TCGGCCCTAG 0.620201 -37 CGCCCAGACCCCGCGGCCGG 6 42 1 CCGCGGCCGG 0.749772 -10 ACCCGCGATGTCGTGGCGGGGTGCAAAACT 7 17 0 TCGTGGCGGG 0.779354 -45 TACGAGACTATCGGCGCGGATACCCGCGAT 7 38 0 TCGGCGCGGA 0.88463 -24 CCGGGTCGGCCTATCCATCC 8 1 1 CCGGGTCGGC 0.881255 -300 TGACCAGGTCGCGCAGCTGCACGCCATCCA 8 74 1 GCGCAGCTGC 0.931738 -227 GTCACCGTGACCGCCGCCAAGAACCCGCGC 8 113 1 CCGCCGCCAA 0.937422 -188 TTCGCAGATCGGGGCGCGGGTTCTTGGCGG 8 126 0 GGGGCGCGGG 0.980751 -175 TGAGGTCGATGTGCCGCCGAGCCACCAGCG 8 159 0 GTGCCGCCGA 0.714377 -142 TCGACCTCAAGCGGGTCTGCAGCTGTGGCT 8 180 1 GCGGGTCTGC 0.614901 -121 CTGTGGCTGTCGGCCTTGACGCCGTAAACC 8 202 1 CGGCCTTGAC 0.492668 -99 CCACCTGTATCTGCAGCCGGCGACCGGATC 8 236 1 CTGCAGCCGG 0.883014 -65 CAGCCGGCGACCGGATCTGCCCCTCCCGGA 8 249 1 CCGGATCTGC 0.763562 -52 TCGCCGCCGCCCGTTTTGTG 10 1 1 TCGCCGCCGC 0.882167 -283 GTGATTTTCCCGGCAGCGGAATCCACAGCG 10 42 0 CGGCAGCGGA 0.935523 -242 CCGATGCGAGCTGCGCCGAGTAGTTTACAC 10 83 0 CTGCGCCGAG 0.651668 -201 TCGGCGCAGCTCGCATCGGCGGGCTGACTT 10 94 1 TCGCATCGGC 0.789098 -190 CCGGAAAGGCGGGCCGCGGTGCAGACACGC 10 125 0 GGGCCGCGGT 0.91499 -159 CCCGCCTTTCCGGGATCCGCAACAGCATGC 10 142 1 CGGGATCCGC 0.852062 -142 CGCCGCGGGACCGCCCCGGCATGCTGTTGC 10 160 0 CCGCCCCGGC 0.987961 -124 CCGAAGGGAACCGCCGCGGGACCGCCCCGG 10 171 0 CCGCCGCGGG 0.991959 -113 TGCCGCGATGCCGGACCCGGGAGGAAATCC 10 201 0 CCGGACCCGG 0.504447 -83 GCCCTGGCGTCTGCCGCGATGCCGGACCCG 10 212 0 CTGCCGCGAT 0.627183 -72 CGGCTGAAGCCGGGCCCTGGCGTCTGCCGC 10 225 0 CGGGCCCTGG 0.914301 -59 GTTGTTCGCCCGGCATCGGCTGAAGCCGGG 10 241 0 CGGCATCGGC 0.897396 -43 GTTTCGGCAGCCGGCGTCGGCCGTCCGGCC 11 45 1 CCGGCGTCGG 0.565231 -40 AAAGCCTAATGGGTGGCCGGACGGCCGACG 11 59 0 GGGTGGCCGG 0.808553 -26 ********** Masking position 3 Map Score: 92.0234 Number of sites scoring better than the average of aligned sites = 117056 Number in coding regions = 109917 Number in noncoding regions = 7139 Number of orfs with sites within 600 bp upstream = 1614 Fraction of orfs with sites within 600 bp upstream = 0.259235 Motif number 3 ACGGTCGCACCGACCGTGCCTGACCGAAGG 1 22 1 CGACCGTGCC 0.917087 -279 TCGCATCATGGCGCCGCTCTACACCTTCGG 1 45 0 GCGCCGCTCT 0.652259 -256 CTGGTTGCGCCCTCCCCGCTCTGTCCTGAA 1 93 0 CCTCCCCGCT 0.812305 -208 CGCAACCAGCCCGGCGCGATCCGGGCTCGT 1 114 1 CCGGCGCGAT 0.921 -187 AACTCCGGTTTCGACGAGCCCGGATCGCGC 1 127 0 TCGACGAGCC 0.494151 -174 GAACTGTTGGCGACCTCGCCGTGGCCGAAA 1 181 1 CGACCTCGCC 0.819386 -120 GGGCATCCGGCGGCCGCGACATCGTTTCGG 1 205 0 CGGCCGCGAC 0.976024 -96 GAGCAATCGGCTGCCCGGCCAAATGGGCAT 1 229 0 CTGCCCGGCC 0.731805 -72 ACCGTAGCTAGCCCCGCGACCCG 2 4 0 GCCCCGCGAC 0.751337 -297 GGACAAGAAACCGCCACTCCCCGGGGGCGA 2 72 0 CCGCCACTCC 0.91341 -229 CCCTGATGGTGCAGCAGGACAAGAAACCGC 2 88 0 GCAGCAGGAC 0.672289 -213 CCGAAGATCGCGGCCGCGCCCAGCAACAGA 2 123 1 CGGCCGCGCC 0.993671 -178 AACAGACCAACCACCACGCTTGCGGCGGCG 2 147 1 CCACCACGCT 0.953645 -154 CTTGCGGCGGCGGGCGCGACGATCCGGTTC 2 165 1 CGGGCGCGAC 0.956889 -136 CCGGGTTGGGGGGCCAGGCCCACGCTTCTG 2 250 0 GGGCCAGGCC 0.88844 -51 AGCGTATGCGCCACCGTGACAGCATGTCCG 2 280 1 CCACCGTGAC 0.894444 -21 GCGGCGTGAGCACGCCGTTTGGTTGG 3 7 1 TGAGCACGCC 0.734011 -44 TTCCATCGAAACACCGCGCCCTGGCCCCAG 5 41 0 ACACCGCGCC 0.901664 -260 CGTGCGAAATTCACAGGGCCACAGCTGAAT 5 70 0 TCACAGGGCC 0.50902 -231 CACAAACCGCCCACCGCTACTCGTGACCTA 5 128 1 CCACCGCTAC 0.806575 -173 GCCAGTGTATCCAGCGAGCCGCTCCCGGGC 5 241 0 CCAGCGAGCC 0.96807 -60 CCGATATGGCCCGCCCAGACCCCGCGGCCG 6 31 1 CCGCCCAGAC 0.942939 -21 CAATAGTTTTGCACCCCGCCACGACATCGC 7 13 1 GCACCCCGCC 0.988031 -49 TCAAAACTACGCAACAAGCCTGGATGGATG 8 26 0 GCAACAAGCC 0.432039 -275 AGGTCGCGCAGCTGCACGCCATCCATGGCA 8 79 1 GCTGCACGCC 0.753833 -222 TGGCAGAATGTCACCGTGACCGCCGCCAAG 8 104 1 TCACCGTGAC 0.522625 -197 CCAAGAACCCGCGCCCCGATCTGCGAATCG 8 129 1 GCGCCCCGAT 0.859814 -172 CGCCGAGCCACCAGCGCGATTCGCAGATCG 8 145 0 CCAGCGCGAT 0.877901 -156 GGTCGATGTGCCGCCGAGCCACCAGCGCGA 8 156 0 CCGCCGAGCC 0.98903 -145 CGCCGTAAACCCAGCCCACCTGTATCTGCA 8 221 1 CCAGCCCACC 0.813207 -80 GACATCCGTTCCAGCAGACCTTCGAGAAGA 9 12 0 CCAGCAGACC 0.434252 -25 GCAGCGGAATCCACAGCGACGACATTGTCC 10 30 0 CCACAGCGAC 0.869955 -254 TAGTTTACACCGACCCAGCTGGTGATTTTC 10 63 0 CGACCCAGCT 0.702306 -221 ACACGCGAAGTCAGCCCGCCGATGCGAGCT 10 101 0 TCAGCCCGCC 0.93497 -183 TGTCTGCACCGCGGCCCGCCTTTCCGGGAT 10 128 1 GCGGCCCGCC 0.986485 -156 CGGGACCGCCCCGGCATGCTGTTGCGGATC 10 155 0 CCGGCATGCT 0.674467 -129 GGAACCGCCGCGGGACCGCCCCGGCATGCT 10 165 0 CGGGACCGCC 0.845605 -119 GCAGACGCCAGGGCCCGGCTTCAGCCGATG 10 228 1 GGGCCCGGCT 0.712911 -56 ACGCCGGCTGCCGAAACGCCGTGGATACAT 11 32 0 CCGAAACGCC 0.586643 -53 CCGGCGTCGGCCGTCCGGCCACCCATTAGG 11 55 1 CCGTCCGGCC 0.773007 -30 GACCGCAAAGCCTAATGGGTGG 11 73 0 CCGCAAAGCC 0.765777 -12 ********** Masking position 5 Map Score: 53.3761 Number of sites scoring better than the average of aligned sites = 55869 Number in coding regions = 51898 Number in noncoding regions = 3971 Number of orfs with sites within 600 bp upstream = 1480 Fraction of orfs with sites within 600 bp upstream = 0.237713 Motif number 4 GGGCGCAACCAGCCCGGCGCGATCCGGGCT 1 111 1 AGCCCGGCGC 0.849229 -190 GTTGGCGACCTCGCCGTGGCCGAAACGATG 1 186 1 TCGCCGTGGC 0.890534 -115 CATCAGTGCTCAACCGGGTCGAGTACGGTA 2 34 0 CAACCGGGTC 0.469663 -267 CGACGGATCGCCCCCGGGGAGTGGCGGTTT 2 65 1 CCCCCGGGGA 0.9038 -236 ATCGTCGCGCCCGCCGCCGCAAGCGTGGTG 2 158 0 CCGCCGCCGC 0.977344 -143 CGTCGAGGAGCCACCGATGAACCGGATCGT 2 183 0 CCACCGATGA 0.513493 -118 GCCGCACCCACAGCCGTCGAGGAGCCACCG 2 197 0 CAGCCGTCGA 0.886369 -104 CTGGCCCCCCAACCCGGAGCGTATGCGCCA 2 263 1 AACCCGGAGC 0.469365 -38 ACATGCTGTCACGGTGGCGCATACGCTCCG 2 277 0 ACGGTGGCGC 0.562254 -24 CCGGGGGTACCCCCTGGGCTTAGCTGGGC 5 10 1 CCCCCTGGGC 0.809344 -291 GCTTAGCTGGGCACTGGGGCCAGGGCGCGG 5 28 1 GCACTGGGGC 0.622399 -273 CGATGGAATTCAGCTGTGGCCCTGTGAATT 5 63 1 CAGCTGTGGC 0.950823 -238 TGAATTTCGCACGCTGACGCCGGTTGATGC 5 87 1 ACGCTGACGC 0.892816 -214 ACCTACGTGGCAGCTGGGGCACTAGTGGCT 5 153 1 CAGCTGGGGC 0.983906 -148 CACACGCCATCCACCGTTGCACGTCTGCAC 5 193 0 CCACCGTTGC 0.85489 -108 TAAGGGTAATCAGCCCGGGAGCGGCTCGCT 5 229 1 CAGCCCGGGA 0.602329 -72 CTCGCTGGATACACTGGCGCCCGTGACTGC 5 253 1 ACACTGGCGC 0.888287 -48 GTGACTGCTGCACCTGACGCTCGCACTACC 5 275 1 CACCTGACGC 0.791752 -26 CCATCATCATCCCCTAGGGCCGATATGGCC 6 12 1 CCCCTAGGGC 0.811408 -40 GCCCGCCCAGACCCCGCGGCCGG 6 39 1 ACCCCGCGGC 0.899882 -13 TGCCGCCGAGCCACCAGCGCGATTCGCAGA 8 148 0 CCACCAGCGC 0.810602 -153 AGCGGGTCTGCAGCTGTGGCTGTCGGCCTT 8 189 1 CAGCTGTGGC 0.950823 -112 CCTGTATCTGCAGCCGGCGACCGGATCTGC 8 239 1 CAGCCGGCGA 0.957625 -62 GACAATGTCGTCGCTGTGGATTCCGCTGCC 10 31 1 TCGCTGTGGA 0.455973 -253 TACACCGACCCAGCTGGTGATTTTCCCGGC 10 58 0 CAGCTGGTGA 0.744484 -226 CGAAGTCAGCCCGCCGATGCGAGCTGCGCC 10 96 0 CCGCCGATGC 0.950247 -188 CCGCAACAGCATGCCGGGGCGGTCCCGCGG 10 158 1 ATGCCGGGGC 0.846252 -126 ATCGCGGCAGACGCCAGGGCCCGGCTTCAG 10 222 1 ACGCCAGGGC 0.883188 -62 GGCCCGGCTTCAGCCGATGCCGGGCGAACA 10 239 1 CAGCCGATGC 0.879577 -45 GGCCAACACTGTGGCACAACGATGT 11 6 1 ACACTGTGGC 0.787565 -79 GGCTGCCGAAACGCCGTGGATACATCGTTG 11 27 0 ACGCCGTGGA 0.902332 -58 CGGCCGACGCCGGCTGCCGAAACGCCGTGG 11 38 0 CGGCTGCCGA 0.476053 -47 GGTGGCCGGACGGCCGACGCCGGCTGCCGA 11 48 0 CGGCCGACGC 0.920362 -37 ********** Masking position 9 Map Score: 44.0931 Number of sites scoring better than the average of aligned sites = 41532 Number in coding regions = 39112 Number in noncoding regions = 2420 Number of orfs with sites within 600 bp upstream = 1125 Fraction of orfs with sites within 600 bp upstream = 0.180694 Motif number 5 CAGGCACGGTCGGTGCGACCGTCCCTGTCTCCA 1 11 0 CGGGCGACTC 0.915886 -290 AGAGCGGGGAGGGCGCAACCAGCCCGGCGCGAT 1 101 1 GGGGCAACGC 0.948248 -200 GCAACCAGCCCGGCGCGATCCGGGCTCGTCGAA 1 115 1 CGGGCGACGG 0.985926 -186 TTCGATCGTGCGGTTCAGACAAGGGCCAACTCC 1 151 0 CGGTCAGCAG 0.741458 -150 AGGGTGTTCCCGGAGCAATCGGCTGCCCGGCCA 1 238 0 CGGGCAACGC 0.988558 -63 CCGGTCTGTTCGGCGTACTCGGGGGCGGTCAAG 1 269 0 CGGGTACCGG 0.980242 -32 CAGCTCAGTCCGGTCTGTTCGGC 1 288 0 CAGTCAGCGG 0.318519 -13 CGGGTCGCGGGGCTAGCTACGGTTACCGTA 2 8 1 CGGGCTACAC 0.464273 -293 GTCGTCATCAGTGCTCAACCGGGTCGAGTACGG 2 36 0 GTGTCAACGG 0.249814 -265 CTGATGACGACGGATCGCCCCCGGGGAGTGGCG 2 58 1 CGGTCGCCCG 0.862021 -243 CCGCGATCTTCGGAGTGACCCTGATGGTGCAGC 2 103 0 CGGGTGACTG 0.834316 -198 GTCTGTTGCTGGGCGCGGCCGCGATCTTCGGAG 2 121 0 GGGGCGGCCG 0.864448 -180 TCGCGCCCGCCGCCGCAAGCGTGGTGGTTGGTC 2 151 0 CGCGCAACTG 0.60783 -150 TCCAACCAAACGGCGTGCTCACGCCGC 3 5 0 CGGGTGCCCG 0.951327 -46 GCTAAGCCCAGGGGGTACCCCCGG 5 2 0 GGGGTACCCG 0.752612 -299 CTGGGCTTAGCTGGGCACTGGGGCCAGGGCGCG 5 24 1 CTGGCACGGG 0.304181 -277 CAGCATCAACCGGCGTCAGCGTGCGAAATTCAC 5 86 0 CGGGTCACTG 0.768694 -215 GCTGTGAGTCGGGCACAAACCGCCCACCGCTAC 5 115 1 GGGACAACGC 0.831475 -186 CTGCCGTTTGCGGTGCAGACGTGCAACGGTGGA 5 181 1 CGGGCAGCTG 0.958335 -120 GAGCGGCTCGCTGGATACACTGGCGCCCGTGAC 5 247 1 CTGATACCGG 0.538967 -54 ACGACATCGCGGGTATCCGCGCCGATAGTCTCG 7 33 1 GGGATCCCCC 0.34382 -29 TGGCGTGCAGCTGCGCGACCTGGTCAAATTTCT 8 67 0 CTGGCGACGG 0.865068 -234 CTGCCCCTCCCGGAACAAGCGGCGTTTAGCGCG 8 265 1 CGGACAACGC 0.958793 -36 TTCCCGGCAGCGGAATCCACAGCGACGACATTG 10 33 0 CGGATCCCGC 0.796986 -251 ATTCCGCTGCCGGGAAAATCACCAGCTGGGTCG 10 50 1 CGGAAAACCC 0.356866 -234 CCAGCTGGGTCGGTGTAAACTACTCGGCGCAGC 10 71 1 CGGGTAACAC 0.83388 -213 GTAAACTACTCGGCGCAGCTCGCATCGGCGGGC 10 85 1 CGGGCAGTGC 0.671679 -199 AGGCGGGCCGCGGTGCAGACACGCGAAGTCAGC 10 116 0 CGGGCAGCCG 0.986285 -168 CCCGCCTTTCCGGGATCCGCAACAGCATGCCGG 10 142 1 CGGATCCCAC 0.390444 -142 AACAGCATGCCGGGGCGGTCCCGCGGCGGTTCC 10 162 1 CGGGCGGCCG 0.523696 -122 GGTCCGGCATCGCGGCAGACGCCAGGGCCCGGC 10 214 1 CGCGCAGCCC 0.771237 -70 CGCCCGGCATCGGCTGAAGCCGGGCCCTGGCGT 10 232 0 CGGTGAACGG 0.501957 -52 TTTCGGCAGCCGGCGTCGGCCGTCCGGCCACCC 11 46 1 CGGGTCGCGT 0.544335 -39 GTAAACAGGTCGGTATACTCAGCACT 12 4 0 CGGATACCGC 0.908084 -89 TGTGCTTTGACGGTACACGCGCTAAGGGGTGTT 12 37 0 CGGACACCCT 0.635364 -56 *** **** * ** Masking position 3 Map Score: 43.177 Number of sites scoring better than the average of aligned sites = 37217 Number in coding regions = 35054 Number in noncoding regions = 2163 Number of orfs with sites within 600 bp upstream = 1088 Fraction of orfs with sites within 600 bp upstream = 0.174751 Motif number 6 GGATCGCGCCGGGCTGGTTGCGCCCTCCCCGC 1 104 0 GGGCTGTGCG 0.992647 -197 CCGGCCAAATGGGCATCCGGCGGCCGCGACAT 1 213 0 GGGCATCGCG 0.816386 -88 CCGGAGCAATCGGCTGCCCGGCCAAATGGGCA 1 230 0 CGGCTGCGGC 0.895493 -71 GCACTGATGACGACGGATCGCCCCCGGGGAGT 2 55 1 CGACGGTGCC 0.781274 -246 CGGGGAGTGGCGGTTTCTTGTCCTGCTGCACC 2 79 1 CGGTTTTGTC 0.353972 -222 ACCACGCTTGCGGCGGCGGGCGCGACGATCCG 2 159 1 CGGCGGGGCG 0.975195 -142 GGCTCCTCGACGGCTGTGGGTGCGGCTTGAGA 2 201 1 CGGCTGGGTG 0.872939 -100 CCTTCCCCTACGCTTGGCCGCGC 3 38 1 CGCTTGCGCG 0.881688 -13 GAGTAGCGGTGGGCGGTTTGTGCCCGACTCAC 5 118 0 GGGCGGTGTG 0.938208 -183 AGACGTGCAACGGTGGATGGCGTGTGCTGCAT 5 197 1 CGGTGGTGCG 0.964888 -104 AGCCGCTCCCGGGCTGATTACCCTTAATGCAG 5 223 0 GGGCTGTACC 0.741071 -78 CCATCCATCCAGGCTTGTTGCGTAGTTTTGAT 8 25 1 AGGCTTTGCG 0.833341 -276 ATCGGGGCGCGGGTTCTTGGCGGCGGTCACGG 8 117 0 GGGTTCTGCG 0.729195 -184 TCTGCAGCTGTGGCTGTCGGCCTTGACGCCGT 8 195 1 TGGCTGCGCC 0.907001 -106 CAGGTGGGCTGGGTTTACGGCGTCAAGGCCGA 8 211 0 GGGTTTCGCG 0.914036 -90 CCGGAACAAGCGGCGTTTAGCGCGTCCTAGGT 8 274 1 CGGCGTTGCG 0.971499 -27 TCGCATCGGCGGGCTGACTTCGCGTGTCTGCA 10 104 1 GGGCTGCTCG 0.891477 -180 GATCCCGGAAAGGCGGGCCGCGGTGCAGACAC 10 127 0 AGGCGGCGCG 0.970007 -157 ACTCATGTGTCGGTTGTTCGCCCGGCATCGGC 10 251 0 CGGTTGTGCC 0.955887 -33 CACGGCGTTTCGGCAGCCGGCGTCGGCCGTCC 11 39 1 CGGCAGCGCG 0.843899 -46 CCTAATGGGTGGCCGGACGGCCGACGCCGGCT 11 53 0 GGCCGGCGCC 0.551155 -32 ****** * *** Masking position 2 Map Score: 32.3902 Number of sites scoring better than the average of aligned sites = 15251 Number in coding regions = 14125 Number in noncoding regions = 1126 Number of orfs with sites within 600 bp upstream = 759 Fraction of orfs with sites within 600 bp upstream = 0.121908 Motif number 7 AGAGCGGCGCCATGATGCGACGCCGCAGAC 1 55 1 CATGATGCGA 0.933862 -246 CCGGACATGCTGTCACGGTGGCGCA 2 286 0 CATGCTGTCA 0.983335 -15 CCATGCTGCCAGTCAAAGTGG 4 2 1 CATGCTGCCA 0.994306 -27 GACGCCGGTTGATGCTGTGAGTCGGGCACA 5 102 1 GATGCTGTGA 0.876106 -199 CACTAGTGCCCCAGCTGCCACGTAGGTCAC 5 150 0 CCAGCTGCCA 0.940307 -151 GTCACGGTGACATTCTGCCATGGATGGCGT 8 94 0 CATTCTGCCA 0.964305 -207 ********** Masking position 6 Map Score: 3.21501 Number of sites scoring better than the average of aligned sites = 325 Number in coding regions = 287 Number in noncoding regions = 38 Number of orfs with sites within 600 bp upstream = 50 Fraction of orfs with sites within 600 bp upstream = 0.00803084 Motif number 8 ********** No masking Map Score: -3.91266e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 9 TGGAGACAGGGACGGTCGCACCGACCG 1 7 1 CAGGACGGTC 0.942018 -294 TTCGGTCAGGCACGGTCGGTGCGACCGTCCC 1 19 0 CAGGTCGGTG 0.970016 -282 CGCACGATCGAACTGTTGGCGACCTCGCCGT 1 172 1 AATGTTGGCG 0.743947 -129 CGGGGGCGGTCAAGGGTGTTCCCGGAGCAAT 1 252 0 CAGGGTGTTC 0.850888 -49 TCGCTGGATACACTGGCGCCCGTGACTGCTG 5 254 1 CATGGCGCCC 0.750664 -47 CCGGGTCGGCCTATCCATCCA 8 1 1 CCGGTCGGCC 0.964847 -300 GACATTCTGCCATGGATGGCGTGCAGCTGCG 8 85 0 CAGGATGGCG 0.954283 -216 TTAGCGCGTCCTAGGTCGGCG 8 290 1 CTGGTCGGCG 0.946649 -11 GGTCTGCTGGAACGGATGTCCTCTG 9 22 1 AAGGATGTCC 0.589013 -15 TTGTCCACAAAACGGGCGGCGGCGA 10 5 0 AAGGGCGGCG 0.974356 -279 GTTTTGTGGACAATGTCGTCGCTGTGGATTC 10 23 1 CATGTCGTCG 0.828673 -261 AAATCACCAGCTGGGTCGGTGTAAACTACTC 10 65 1 CTGGTCGGTG 0.870694 -219 CAACAGCATGCCGGGGCGGTCCCGCGGCGGT 10 161 1 CCGGGCGGTC 0.935031 -123 CGTTGTGCCACAGTGTTGGCC 11 1 0 CATGTTGGCC 0.909006 -84 CGCAAAGCCTAATGGGTGGCCGGACGGCCGA 11 61 0 AAGGGTGGCC 0.94878 -24 TACACGCGCTAAGGGGTGTTGTAAACAGGTC 12 26 0 AAGGGTGTTG 0.62401 -67 ** ******** Masking position 5 Map Score: 20.481 Number of sites scoring better than the average of aligned sites = 10697 Number in coding regions = 10057 Number in noncoding regions = 640 Number of orfs with sites within 600 bp upstream = 489 Fraction of orfs with sites within 600 bp upstream = 0.0785416 Motif number 10 ********** No masking Map Score: -3.91266e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 11 ********** No masking Map Score: -3.91266e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ********** No masking Map Score: -3.91266e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0