AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00460_mtub_reg_300.orf -o00460_mtub_300.ace -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 glyA2 300 glyA2 #2 lpqI 300 lpqI #3 ggtA 50 ggtA #4 Rv0774c 28 hypothetical protein Rv0774c #5 glyA 300 glyA #6 ansA 51 ansA #7 amiA2 61 amiA2 #8 nirA 300 nirA #9 ggtB 36 ggtB #10 rpsB 283 rpsB #11 gatC 84 gatC #12 Rv3174 92 hypothetical protein Rv3174 Motif number 1 GTCAGGCACGGTCGGTGCGACCGTCCCTGT 1 16 0 GTCGGTGCGA 0.694282 -285 TACACCTTCGGTCAGGCACGGTCGGTGCGA 1 26 0 GTCAGGCACG 0.614257 -275 GCGTCGCATCATGGCGCCGCTCTACACCTT 1 48 0 ATGGCGCCGC 0.895253 -253 GCGCCATGATGCGACGCCGCAGACTCTCAG 1 61 1 GCGACGCCGC 0.694186 -240 GCTGGTTGCGCCCTCCCCGCTCTGTCCTGA 1 94 0 CCCTCCCCGC 0.699213 -207 ACGAGCCCGGATCGCGCCGGGCTGGTTGCG 1 114 0 ATCGCGCCGG 0.960049 -187 TCCGGTTTCGACGAGCCCGGATCGCGCCGG 1 124 0 ACGAGCCCGG 0.641139 -177 CAGACAAGGGCCAACTCCGGTTTCGACGAG 1 139 0 CCAACTCCGG 0.546447 -162 CATCGTTTCGGCCACGGCGAGGTCGCCAAC 1 186 0 GCCACGGCGA 0.907037 -115 CCGAAACGATGTCGCGGCCGCCGGATGCCC 1 205 1 GTCGCGGCCG 0.987923 -96 GTCGCGGCCGCCGGATGCCCATTTGGCCGG 1 215 1 CCGGATGCCC 0.62928 -86 TGCCCATTTGGCCGGGCAGCCGATTGCTCC 1 230 1 GCCGGGCAGC 0.927125 -71 AACACCCTTGACCGCCCCCGAGTACGCCGA 1 263 1 ACCGCCCCCG 0.959622 -38 CAGCTCAGTCCGGTCTGTTCGGC 1 288 0 CTCAGTCCGG 0.77715 -13 GTAACCGTAGCTAGCCCCGCGACCCG 2 7 0 CTAGCCCCGC 0.784089 -294 GGTTACCGTACTCGACCCGGTTGAGCACTG 2 31 1 CTCGACCCGG 0.89949 -270 ACAAGAAACCGCCACTCCCCGGGGGCGATC 2 70 0 GCCACTCCCC 0.945996 -231 CACCATCAGGGTCACTCCGAAGATCGCGGC 2 107 1 GTCACTCCGA 0.66016 -194 TCCGAAGATCGCGGCCGCGCCCAGCAACAG 2 122 1 GCGGCCGCGC 0.836891 -179 CACCACGCTTGCGGCGGCGGGCGCGACGAT 2 158 1 GCGGCGGCGG 0.799009 -143 ACCCACAGCCGTCGAGGAGCCACCGATGAA 2 192 0 GTCGAGGAGC 0.682472 -109 CTCGACGGCTGTGGGTGCGGCTTGAGAGGC 2 206 1 GTGGGTGCGG 0.883346 -95 AAGCGTGGGCCTGGCCCCCCAACCCGGAGC 2 253 1 CTGGCCCCCC 0.939084 -48 CGGACATGCTGTCACGGTGGCGCATACGCT 2 280 0 GTCACGGTGG 0.603987 -21 AAACGGCGTGCTCACGCCGC 3 1 0 CTCACGCCGC 0.956581 -50 TCCCCTACGCTTGGCCGCGC 3 41 1 TTGGCCGCGC 0.602748 -10 GCGCCCTGGCCCCAGTGCCCAGCTAAGCCC 5 26 0 CCCAGTGCCC 0.768607 -275 GGGCACTGGGGCCAGGGCGCGGTGTTTCGA 5 36 1 GCCAGGGCGC 0.963336 -265 ATTTCGCACGCTGACGCCGGTTGATGCTGT 5 90 1 CTGACGCCGG 0.913676 -211 GATGCTGTGAGTCGGGCACAAACCGCCCAC 5 112 1 GTCGGGCACA 0.421023 -189 TCGGGCACAAACCGCCCACCGCTACTCGTG 5 123 1 ACCGCCCACC 0.747856 -178 TGGGGCACTAGTGGCTGCCGTTTGCGGTGC 5 167 1 GTGGCTGCCG 0.923518 -134 TATCCAGCGAGCCGCTCCCGGGCTGATTAC 5 234 0 GCCGCTCCCG 0.986101 -67 GCTGGATACACTGGCGCCCGTGACTGCTGC 5 256 1 CTGGCGCCCG 0.958747 -45 GCCGATATGGCCCGCCCAGACCCCGCGGCC 6 30 1 CCCGCCCAGA 0.72231 -22 CCGCCCAGACCCCGCGGCCGG 6 41 1 CCCGCGGCCG 0.990036 -11 TACCCGCGATGTCGTGGCGGGGTGCAAAAC 7 18 0 GTCGTGGCGG 0.730837 -44 GTACGAGACTATCGGCGCGGATACCCGCGA 7 39 0 ATCGGCGCGG 0.854088 -23 GGATGGATAGGCCGACCCGG 8 1 0 GCCGACCCGG 0.935824 -300 ATTTGACCAGGTCGCGCAGCTGCACGCCAT 8 71 1 GTCGCGCAGC 0.951223 -230 GAATGTCACCGTGACCGCCGCCAAGAACCC 8 109 1 GTGACCGCCG 0.879348 -192 CCGCCAAGAACCCGCGCCCCGATCTGCGAA 8 126 1 CCCGCGCCCC 0.98758 -175 CGATCTGCGAATCGCGCTGGTGGCTCGGCG 8 145 1 ATCGCGCTGG 0.50296 -156 AGGTCGATGTGCCGCCGAGCCACCAGCGCG 8 157 0 GCCGCCGAGC 0.961733 -144 AGCCACAGCTGCAGACCCGCTTGAGGTCGA 8 180 0 GCAGACCCGC 0.485826 -121 GGTTTACGGCGTCAAGGCCGACAGCCACAG 8 202 0 GTCAAGGCCG 0.753722 -99 CGCCGTAAACCCAGCCCACCTGTATCTGCA 8 221 1 CCAGCCCACC 0.42322 -80 TGTATCTGCAGCCGGCGACCGGATCTGCCC 8 241 1 GCCGGCGACC 0.863733 -60 TCGCCGCCGCCCGTTTTGTGGA 10 3 1 GCCGCCGCCC 0.99105 -281 GGACAATGTCGTCGCTGTGGATTCCGCTGC 10 30 1 GTCGCTGTGG 0.652336 -254 CGCTGTGGATTCCGCTGCCGGGAAAATCAC 10 42 1 TCCGCTGCCG 0.716862 -242 GTAGTTTACACCGACCCAGCTGGTGATTTT 10 64 0 CCGACCCAGC 0.669629 -220 GCCGATGCGAGCTGCGCCGAGTAGTTTACA 10 84 0 GCTGCGCCGA 0.356163 -200 GACACGCGAAGTCAGCCCGCCGATGCGAGC 10 102 0 GTCAGCCCGC 0.918418 -182 GCGTGTCTGCACCGCGGCCCGCCTTTCCGG 10 125 1 ACCGCGGCCC 0.95815 -159 GCATGCTGTTGCGGATCCCGGAAAGGCGGG 10 142 0 GCGGATCCCG 0.790579 -142 GCAACAGCATGCCGGGGCGGTCCCGCGGCG 10 160 1 GCCGGGGCGG 0.989904 -124 CCGGGGCGGTCCCGCGGCGGTTCCCTTCGG 10 171 1 CCCGCGGCGG 0.992238 -113 GGATTTCCTCCCGGGTCCGGCATCGCGGCA 10 201 1 CCGGGTCCGG 0.503202 -83 CGCGGCAGACGCCAGGGCCCGGCTTCAGCC 10 224 1 GCCAGGGCCC 0.943332 -60 CCCGGCTTCAGCCGATGCCGGGCGAACAAC 10 241 1 GCCGATGCCG 0.887837 -43 GGCCGGACGGCCGACGCCGGCTGCCGAAAC 11 45 0 CCGACGCCGG 0.732816 -40 ********** Masking position 8 Map Score: 95.4949 Number of sites scoring better than the average of aligned sites = 149799 Number in coding regions = 140112 Number in noncoding regions = 9687 Number of orfs with sites within 600 bp upstream = 1769 Fraction of orfs with sites within 600 bp upstream = 0.284131 Motif number 2 CGAAGGTGTAGAGCGGCGCCATGATGCGAC 1 46 1 GAGCGGCGCC 0.835076 -255 ACCTGAGAGTCTGCGGCGTCGCATCATGGC 1 63 0 CTGCGGCGTC 0.886102 -238 GTTTCGGCCACGGCGAGGTCGCCAACAGTT 1 182 0 CGGCGAGGTC 0.802666 -119 CATCCGGCGGCCGCGACATCGTTTCGGCCA 1 202 0 CCGCGACATC 0.902567 -99 AACCGCCACTCCCCGGGGGCGATCCGTCGT 2 64 0 CCCCGGGGGC 0.981192 -237 CCTGCTGCACCATCAGGGTCACTCCGAAGA 2 100 1 CATCAGGGTC 0.506353 -201 CGATCCGGTTCATCGGTGGCTCCTCGACGG 2 184 1 CATCGGTGGC 0.861553 -117 ATCGGTGGCTCCTCGACGGCTGTGGGTGCG 2 195 1 CCTCGACGGC 0.93552 -106 GTATGCGCCACCGTGACAGCATGTCCGG 2 283 1 CCGTGACAGC 0.610068 -18 CCCCAGTGCCCAGCTAAGCCCAGGGGGTAC 5 17 0 CAGCTAAGCC 0.743699 -284 CGCGCCCTGGCCCCAGTGCCCAGCTAAGCC 5 27 0 CCCCAGTGCC 0.82137 -274 CGATGGAATTCAGCTGTGGCCCTGTGAATT 5 63 1 CAGCTGTGGC 0.910011 -238 ACCTACGTGGCAGCTGGGGCACTAGTGGCT 5 153 1 CAGCTGGGGC 0.948678 -148 TCGCTGGATACACTGGCGCCCGTGACTGCT 5 254 1 CACTGGCGCC 0.763784 -47 CCATCATCATCCCCTAGGGCCGATATGGCC 6 12 1 CCCCTAGGGC 0.828528 -40 CCGGCCGCGGGGTCTGGGCGGGCC 6 38 0 CCGCGGGGTC 0.992131 -14 GCGCGGATACCCGCGATGTCGTGGCGGGGT 7 25 0 CCGCGATGTC 0.968024 -37 GGTCGATGTGCCGCCGAGCCACCAGCGCGA 8 156 0 CCGCCGAGCC 0.826119 -145 AGCGGGTCTGCAGCTGTGGCTGTCGGCCTT 8 189 1 CAGCTGTGGC 0.910011 -112 TGGCTGTCGGCCTTGACGCCGTAAACCCAG 8 205 1 CCTTGACGCC 0.627846 -96 GCGGAATCCACAGCGACGACATTGTCCACA 10 27 0 CAGCGACGAC 0.805755 -257 ATTTTCCCGGCAGCGGAATCCACAGCGACG 10 39 0 CAGCGGAATC 0.700834 -245 GGAAAATCACCAGCTGGGTCGGTGTAAACT 10 62 1 CAGCTGGGTC 0.919856 -222 GAAAGGCGGGCCGCGGTGCAGACACGCGAA 10 122 0 CCGCGGTGCA 0.778183 -162 TTTCCGGGATCCGCAACAGCATGCCGGGGC 10 148 1 CCGCAACAGC 0.684207 -136 AAGGGAACCGCCGCGGGACCGCCCCGGCAT 10 168 0 CCGCGGGACC 0.968044 -116 CTGGCGTCTGCCGCGATGCCGGACCCGGGA 10 209 0 CCGCGATGCC 0.981839 -75 TGAAGCCGGGCCCTGGCGTCTGCCGCGATG 10 221 0 CCCTGGCGTC 0.808753 -63 GACCGCAAAGCCTAATGGGTGG 11 73 0 CCGCAAAGCC 0.822349 -12 ********** Masking position 10 Map Score: 39.1826 Number of sites scoring better than the average of aligned sites = 40148 Number in coding regions = 37952 Number in noncoding regions = 2196 Number of orfs with sites within 600 bp upstream = 1073 Fraction of orfs with sites within 600 bp upstream = 0.172342 Motif number 3 ATGATGCGACGCCGCAGACTCTCAGGTTTC 1 66 1 GCCGCAGACT 0.583731 -235 CGGGGAGGGCGCAACCAGCCCGGCGCGATC 1 105 1 GCAACCAGCC 0.924739 -196 GGCCAAATGGGCATCCGGCGGCCGCGACAT 1 213 0 GCATCCGGCG 0.780055 -88 GGGTGTTCCCGGAGCAATCGGCTGCCCGGC 1 240 0 GGAGCAATCG 0.624986 -61 CCGAGTACGCCGAACAGACCGGACTGAGCT 1 280 1 CGAACAGACC 0.590975 -21 CCCTGATGGTGCAGCAGGACAAGAAACCGC 2 88 0 GCAGCAGGAC 0.83549 -213 GCCGCGCCCAGCAACAGACCAACCACCACG 2 135 1 GCAACAGACC 0.932422 -166 CGCGCCCGCCGCCGCAAGCGTGGTGGTTGG 2 153 0 GCCGCAAGCG 0.956034 -148 ACCGGATCGTCGCGCCCGCCGCCGCAAGCG 2 163 0 CGCGCCCGCC 0.787231 -138 CAGCCGTCGAGGAGCCACCGATGAACCGGA 2 187 0 GGAGCCACCG 0.803146 -114 CTGTCACGGTGGCGCATACGCTCCGGGTTG 2 272 0 GGCGCATACG 0.412948 -29 GCGGCGTGAGCACGCCGTTTGGTTGG 3 7 1 TGAGCACGCC 0.704999 -44 ACTCACAGCATCAACCGGCGTCAGCGTGCG 5 94 0 TCAACCGGCG 0.667635 -207 CTGTGAGTCGGGCACAAACCGCCCACCGCT 5 116 1 GGCACAAACC 0.624898 -185 TGCCGTTTGCGGTGCAGACGTGCAACGGTG 5 182 1 GGTGCAGACG 0.903858 -119 TACCCTTAATGCAGCACACGCCATCCACCG 5 207 0 GCAGCACACG 0.956298 -94 GCCAGTGTATCCAGCGAGCCGCTCCCGGGC 5 241 0 CCAGCGAGCC 0.430595 -60 AGCGTCAGGTGCAGCAGTCACGGGCGCCAG 5 266 0 GCAGCAGTCA 0.426275 -35 GTCGTGGCGGGGTGCAAAACTATTGTG 7 8 0 GGTGCAAAAC 0.14632 -54 TCAAAACTACGCAACAAGCCTGGATGGATG 8 26 0 GCAACAAGCC 0.918762 -275 AGGTCGCGCAGCTGCACGCCATCCATGGCA 8 79 1 GCTGCACGCC 0.954514 -222 GTGCCGCCGAGCCACCAGCGCGATTCGCAG 8 149 0 GCCACCAGCG 0.855628 -152 GACAGCCACAGCTGCAGACCCGCTTGAGGT 8 183 0 GCTGCAGACC 0.951915 -118 TGCAGCTGTGGCTGTCGGCCTTGACGCCGT 8 197 1 GCTGTCGGCC 0.522493 -104 CGCCGTAAACCCAGCCCACCTGTATCTGCA 8 221 1 CCAGCCCACC 0.839784 -80 ACCTGTATCTGCAGCCGGCGACCGGATCTG 8 238 1 GCAGCCGGCG 0.991093 -63 TGCCCCTCCCGGAACAAGCGGCGTTTAGCG 8 266 1 GGAACAAGCG 0.843054 -35 GACATCCGTTCCAGCAGACCTTCGAGAAGA 9 12 0 CCAGCAGACC 0.910123 -25 TCGCCGCCGCCCGTTTTGTGGA 10 3 1 GCCGCCGCCC 0.93102 -281 ACACGCGAAGTCAGCCCGCCGATGCGAGCT 10 101 0 TCAGCCCGCC 0.820422 -183 GGCGGGCCGCGGTGCAGACACGCGAAGTCA 10 118 0 GGTGCAGACA 0.467063 -166 TGTCTGCACCGCGGCCCGCCTTTCCGGGAT 10 128 1 GCGGCCCGCC 0.917813 -156 ATCCCCGAAGGGAACCGCCGCGGGACCGCC 10 175 0 GGAACCGCCG 0.735744 -109 GTCCGGCATCGCGGCAGACGCCAGGGCCCG 10 215 1 GCGGCAGACG 0.889876 -69 CGGCGTTTCGGCAGCCGGCGTCGGCCGTCC 11 41 1 GCAGCCGGCG 0.991093 -44 GTGCTTTGACGGTACACGCGCTAAGGGGTG 12 39 0 GGTACACGCG 0.71453 -54 ********** Masking position 5 Map Score: 44.0105 Number of sites scoring better than the average of aligned sites = 42860 Number in coding regions = 40318 Number in noncoding regions = 2542 Number of orfs with sites within 600 bp upstream = 1218 Fraction of orfs with sites within 600 bp upstream = 0.195631 Motif number 4 TCAGGCACGGTCGGTGCGACCGTCCCTGTCTCCA 1 11 0 TCGGTACCTC 0.183118 -290 TGGGCATCCGGCGGCCGCGACATCGTTTCGGCCA 1 202 0 GCGGCGACTC 0.620349 -99 CCCGGAGCAATCGGCTGCCCGGCCAAATGGGCAT 1 229 0 TCGGCCCGCC 0.956698 -72 CAGCTCAGTCCGGTCTGTTCGGCGTACTCGGGG 1 278 0 CCGGTTTCGC 0.620381 -23 CCACTCCCCGGGGGCGATCCGTCGTCATCAGTGC 2 55 0 GGGGCCCGCG 0.479588 -246 CCGGGGAGTGGCGGTTTCTTGTCCTGCTGCACCA 2 78 1 GCGGTTTGCC 0.897377 -223 TCCGAAGATCGCGGCCGCGCCCAGCAACAGACCA 2 122 1 GCGGCGCCAG 0.742883 -179 CACCGATGAACCGGATCGTCGCGCCCGCCGCCGC 2 168 0 CCGGATCGGC 0.55006 -133 ATCCGGTTCATCGGTGGCTCCTCGACGGCTGTGG 2 186 1 TCGGTTCCCG 0.849912 -115 CTCCTCGACGGCTGTGGGTGCGGCTTGAGAGGCT 2 203 1 GCTGTTGCGC 0.274982 -98 GCGCGGCCAAGCGTAGGGGAAGGTCC 3 35 0 GCGGCGCGAG 0.815908 -16 GGGCCAGGGCGCGGTGTTTCGATGGAATTCAGCT 5 44 1 GCGGTTCGTG 0.848011 -257 GCCGGTTGATGCTGTGAGTCGGGCACAAACCGCC 5 105 1 GCTGTTCGGC 0.919088 -196 GGCACTAGTGGCTGCCGTTTGCGGTGCAGACGTG 5 170 1 GCTGCTTGGG 0.711553 -131 GTCACGGGCGCCAGTGTATCCAGCGAGCCGCTCC 5 246 0 CCAGTTCCGC 0.306027 -55 TACCGCGGTAGTGCGAGCGTCAGGTGCA 5 283 0 GCGGTGCGGC 0.976588 -18 CCACGACATCGCGGGTATCCGCGCCGATAGTCTC 7 31 1 GCGGGCCGGC 0.885464 -31 CCGGGTCGGCCTATCCATCCATCCAGGCT 8 6 1 TCGGCTCCTC 0.874783 -295 TGGATGGCGTGCAGCTGCGCGACCTGGTCAAATT 8 70 0 GCAGCGCGCC 0.822333 -231 AGATCGGGGCGCGGGTTCTTGGCGGCGGTCACGG 8 117 0 GCGGGTTGCG 0.531122 -184 CGCGCCCCGATCTGCGAATCGCGCTGGTGGCTCG 8 138 1 TCTGCTCGGC 0.913102 -163 TGGTGGCTCGGCGGCACATCGACCTCAAGCGGGT 8 162 1 GCGGCTCGCC 0.98973 -139 GCTGTGGCTGTCGGCCTTGACGCCGTAAACCCAG 8 201 1 TCGGCGACCC 0.718389 -100 CCGGTCGCCGGCTGCAGATACAGGTGGGCTGGGT 8 229 0 GCTGCTACGG 0.452476 -72 GGCGACCGGATCTGCCCCTCCCGGAACAAGCGGC 8 254 1 TCTGCTCCGG 0.767536 -47 CCCGGAACAAGCGGCGTTTAGCGCGTCCTAGGTC 8 273 1 GCGGCTAGGC 0.929396 -28 CAATGTCGTCGCTGTGGATTCCGCTGCCGGGAAA 10 33 1 GCTGTTTCGC 0.514804 -251 TGTAAACTACTCGGCGCAGCTCGCATCGGCGGGC 10 84 1 TCGGCGCTGC 0.619106 -200 ACTTCGCGTGTCTGCACCGCGGCCCGCCTTTCCG 10 120 1 TCTGCGCGCC 0.87352 -164 CGGGACCGCCCCGGCATGCTGTTGCGGATCCCGG 10 151 0 CCGGCCTGTG 0.241938 -133 GCATGCCGGGGCGGTCCCGCGGCGGTTCCCTTCG 10 166 1 GCGGTGCGCG 0.944793 -118 TACTCATGTGTCGGTTGTTCGCCCGGCATCGGCT 10 250 0 TCGGTTCGCC 0.947268 -34 GCAGCCGGCGTCGGCCGTCCGGCCACCCATTAGG 11 51 1 TCGGCCCGCC 0.956698 -34 TGTAAACAGGTCGGTATACTCAGCACT 12 4 0 TCGGTCTCGC 0.619133 -89 ***** *** ** Masking position 4 Map Score: 40.4858 Number of sites scoring better than the average of aligned sites = 50254 Number in coding regions = 47042 Number in noncoding regions = 3212 Number of orfs with sites within 600 bp upstream = 1308 Fraction of orfs with sites within 600 bp upstream = 0.210087 Motif number 5 GTGCGACCGTCCCTGTCTCCA 1 1 0 CCTGTCTCCA 0.89789 -300 CACCGACCGTGCCTGACCGAAGGTGTAGAGC 1 29 1 GCTGACCGAA 0.943435 -272 CGGAGTTGGCCCTTGTCTGAACCGCACGATC 1 150 1 CCTGTCTGAA 0.882359 -151 GGCGACCTCGCCGTGGCCGAAACGATGTCGC 1 189 1 CCTGGCCGAA 0.986367 -112 CCGGGAACACCCTTGACCGCCCCCGAGTACG 1 258 1 CCTGACCGCC 0.981048 -43 AGAAGCGTGGGCCTGGCCCCCCAACCCGGAG 2 251 1 GCTGGCCCCC 0.956157 -50 GTATGCGCCACCGTGACAGCATGTCCGG 2 283 1 CCTGACAGCA 0.974135 -18 CTTCCCCTACGCTTGGCCGCGC 3 39 1 GCTGGCCGCG 0.956002 -12 GTACCACTTTGACTGGCAGCATGG 4 4 0 GATGGCAGCA 0.720701 -25 AAACACCGCGCCCTGGCCCCAGTGCCCAGCT 5 32 0 CCTGGCCCCA 0.988348 -269 ACACTGGCGCCCGTGACTGCTGCACCTGACG 5 263 1 CCTGACTGCT 0.827195 -38 TGCACGCCATCCATGGCAGAATGTCACCGTG 8 91 1 CCTGGCAGAA 0.963745 -210 CAGAATGTCACCGTGACCGCCGCCAAGAACC 8 107 1 CCTGACCGCC 0.981044 -194 GGCTGACTTCGCGTGTCTGCACCGCGGCCCG 10 115 1 GCTGTCTGCA 0.922845 -169 GGCCAACACTGTGGCACAACGATGTATCC 11 9 1 CTTGGCACAA 0.377273 -76 ** ******** Masking position 4 Map Score: 21.8225 Number of sites scoring better than the average of aligned sites = 4327 Number in coding regions = 4057 Number in noncoding regions = 270 Number of orfs with sites within 600 bp upstream = 251 Fraction of orfs with sites within 600 bp upstream = 0.0403148 Motif number 6 GCGCAACCAGCCCGGCGCGATCCGGGCTCG 1 113 1 CCCGGCGCGA 0.955771 -188 CAAGGGTGTTCCCGGAGCAATCGGCTGCCC 1 243 0 CCCGGAGCAA 0.847884 -58 TCAGTGCTCAACCGGGTCGAGTACGGTAAC 2 32 0 ACCGGGTCGA 0.700363 -269 CCGCCACTCCCCGGGGGCGATCCGTCGTCA 2 62 0 CCGGGGGCGA 0.980945 -239 TTCGGAGTGACCCTGATGGTGCAGCAGGAC 2 98 0 CCCTGATGGT 0.700056 -203 CCACCGATGAACCGGATCGTCGCGCCCGCC 2 173 0 ACCGGATCGT 0.590176 -128 GGCCCCCCAACCCGGAGCGTATGCGCCACC 2 265 1 CCCGGAGCGT 0.987745 -36 CCCAGCTAAGCCCAGGGGGTACCCCCGG 5 9 0 CCCAGGGGGT 0.814891 -292 GGTAATCAGCCCGGGAGCGGCTCGCTGGAT 5 233 1 CCGGGAGCGG 0.983543 -68 GCCATATCGGCCCTAGGGGATGATGATGGT 6 11 0 CCCTAGGGGA 0.714355 -41 ACGCAACAAGCCTGGATGGATGGATAGGCC 8 18 0 CCTGGATGGA 0.624872 -283 GCCGCTTGTTCCGGGAGGGGCAGATCCGGT 8 258 0 CCGGGAGGGG 0.983287 -43 GGTGATTTTCCCGGCAGCGGAATCCACAGC 10 43 0 CCGGCAGCGG 0.902177 -241 TGTTGCGGATCCCGGAAAGGCGGGCCGCGG 10 136 0 CCCGGAAAGG 0.608794 -148 CAACAGCATGCCGGGGCGGTCCCGCGGCGG 10 161 1 CCGGGGCGGT 0.73956 -123 CCGGGGCGGTCCCGCGGCGGTTCCCTTCGG 10 171 1 CCCGCGGCGG 0.949813 -113 GGAGGAAATCCCCGAAGGGAACCGCCGCGG 10 182 0 CCCGAAGGGA 0.947516 -102 CGATGCCGGACCCGGGAGGAAATCCCCGAA 10 196 0 CCCGGGAGGA 0.937771 -88 ACGGTACACGCGCTAAGGGGTGTTGTAAAC 12 31 0 CGCTAAGGGG 0.160869 -62 ********** Masking position 9 Map Score: 21.374 Number of sites scoring better than the average of aligned sites = 8773 Number in coding regions = 7947 Number in noncoding regions = 826 Number of orfs with sites within 600 bp upstream = 568 Fraction of orfs with sites within 600 bp upstream = 0.0912303 Motif number 7 ********** No masking Map Score: -3.91266e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 8 ********** No masking Map Score: -3.91266e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 9 ********** No masking Map Score: -3.91266e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0