AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00480_mtub_reg_100.orf -o00480_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 ggtA 50 ggtA #2 Rv0774c 28 hypothetical protein Rv0774c #3 zwf 202 zwf #4 opcA 52 opcA #5 tkt 300 tkt #6 nirA 300 nirA #7 ggtB 36 ggtB #8 PE_PGRS 206 PE_PGRS #9 Rv2854 36 hypothetical protein Rv2854 #10 icd1 282 icd1 Motif number 1 GCGCGGCCAAGCGTAGGGGAAG 1 39 0 GCGGCCAAGC 0.87669 -12 CCATGCTGCCAGTCAAAGTGGTAC 2 5 1 GCTGCCAGTC 0.803782 -24 CGGGCGTCGAGCCGCTCCCGCGGTTGCTCG 3 13 1 GCCGCTCCCG 0.715098 -190 TCCGGCTGAGGCGGATACGCCAGGAAACCG 3 41 0 GCGGATACGC 0.779324 -162 GCGGACTCGTCCCGATGCGCATCCGGCTGA 3 62 0 CCCGATGCGC 0.90768 -141 TCGCCACGATCGAGGCCGGCGGACTCGTCC 3 80 0 CGAGGCCGGC 0.56095 -123 TCGTGGCGATCCCGGCCAGGATGTAGACCG 3 101 1 CCCGGCCAGG 0.511461 -102 ACCCGACGCTGCAGATCGCGGTCTACATCC 3 119 0 GCAGATCGCG 0.606813 -84 AGCCCATTGGCCCGACAACCCGACGCTGCA 3 136 0 CCCGACAACC 0.859904 -67 GTTGAGTTCGGCCGCCGCGGGAAAGCAAGT 3 169 1 GCCGCCGCGG 0.963872 -34 ACCCGCACCTCCAGACTTGCT 3 192 0 CCCGCACCTC 0.869119 -11 CTGCATCGTCGCCGGCGCGGATCA 4 5 0 GCCGGCGCGG 0.886229 -48 CTGCGCCGCTCCTCCTCATCGCTT 4 39 0 GCCGCTCCTC 0.942414 -14 CGCCGGCCAACCGATGATGCCG 5 3 1 CCGGCCAACC 0.843196 -298 TCGGTTGGTCGGCGATCACCGGCATCATCG 5 22 0 GGCGATCACC 0.47693 -279 CCGCGATTAAGCCGGCCGCCCGACCCGCAC 5 58 1 GCCGGCCGCC 0.508598 -243 AGCCCCAGCAGCAGAGCCGCAGGGTCGATG 5 118 1 GCAGAGCCGC 0.705069 -183 ACGTAACCCGCGCGCTACCCACGCTTCGCA 5 178 0 CGCGCTACCC 0.697229 -123 GGGTACCCATCCGGGCCCTGTGAAACGTAA 5 202 0 CCGGGCCCTG 0.759755 -99 TGCCGCATATCCGGGTACCCATCCGGGCCC 5 214 0 CCGGGTACCC 0.733867 -87 GGATGGATAGGCCGACCCGG 6 1 0 GCCGACCCGG 0.524844 -300 TGGATGGCGTGCAGCTGCGCGACCTGGTCA 6 74 0 GCAGCTGCGC 0.924929 -227 AGAATGTCACCGTGACCGCCGCCAAGAACC 6 108 1 CGTGACCGCC 0.442421 -193 CCGCCAAGAACCCGCGCCCCGATCTGCGAA 6 126 1 CCCGCGCCCC 0.651374 -175 AGGTCGATGTGCCGCCGAGCCACCAGCGCG 6 157 0 GCCGCCGAGC 0.950839 -144 AGCCACAGCTGCAGACCCGCTTGAGGTCGA 6 180 0 GCAGACCCGC 0.822571 -121 CGGCGTCAAGGCCGACAGCCACAGCTGCAG 6 196 0 GCCGACAGCC 0.917406 -105 CGCCGTAAACCCAGCCCACCTGTATCTGCA 6 221 1 CCAGCCCACC 0.928707 -80 TGTATCTGCAGCCGGCGACCGGATCTGCCC 6 241 1 GCCGGCGACC 0.931427 -60 TCGAAGGTCTGCTGGAACGGATGTCCTCTG 7 17 1 GCTGGAACGG 0.480876 -20 TCCTTCCTTGGCTGCGCCGCTCCCAGGTTA 8 23 1 GCTGCGCCGC 0.511938 -184 GCTGCCCCGCGCTGCACAGGGTTACTGGCC 8 90 0 GCTGCACAGG 0.63438 -117 TCTTGGGTTGGCTGCCCCGCGCTGCACAGG 8 100 0 GCTGCCCCGC 0.533945 -107 AGACAATTACCCCGAAGCCCACAATGTGCG 8 127 1 CCCGAAGCCC 0.728303 -80 AATGTGCGTCCCTGGCCGCCATAGAATCCG 8 149 1 CCTGGCCGCC 0.520684 -58 GGGCCCCTGACCAGACGGGGAAAGCTC 10 8 0 CCAGACGGGG 0.642308 -275 CGTCTGGTCAGGGGCCCGTCATGGCGGACC 10 21 1 GGGGCCCGTC 0.638708 -262 GCCCGTCATGGCGGACCCGCGCTTGCCGCG 10 34 1 GCGGACCCGC 0.504435 -249 ACCCGCGCTTGCCGCGCAGCCGGCGATGGC 10 48 1 GCCGCGCAGC 0.508166 -235 GGCTACTCAACCTGGTCATCACCCGGGGCA 10 75 1 CCTGGTCATC 0.498669 -208 ACCGCGGTGGGGTGCCCCGGGTGATGACCA 10 87 0 GGTGCCCCGG 0.541946 -196 TTGGAGGGTTGCCGGCCAGCAAGCCGGGGC 10 116 1 GCCGGCCAGC 0.503243 -167 GGGGCTTGACGCTGGCGCTCATGACCGACT 10 141 1 GCTGGCGCTC 0.865904 -142 CTAGCGCATGGCAGCTACTCAGTGCCAACT 10 177 1 GCAGCTACTC 0.672482 -106 CCCTTTACCGGCCGCTAGGGGCCCGCGCGG 10 236 1 GCCGCTAGGG 0.845216 -47 CCGCTAGGGGCCCGCGCGGGCTGCTAGTAA 10 247 1 CCCGCGCGGG 0.496756 -36 ********** Masking position 4 Map Score: 70.4356 Number of sites scoring better than the average of aligned sites = 99574 Number in coding regions = 93018 Number in noncoding regions = 6556 Number of orfs with sites within 600 bp upstream = 1708 Fraction of orfs with sites within 600 bp upstream = 0.274333 Motif number 2 GAAGGTCCAACCAAACGGCGTGCTCACGCC 1 13 0 CCAAACGGCG 0.869638 -38 TTCCCCTACGCTTGGCCGCGC 1 40 1 CTTGGCCGCG 0.63824 -11 TGCGGGCGTCGAGCCGCTCCC 3 2 1 GCGGGCGTCG 0.864225 -201 AGGAAACCGAGCAACCGCGGGAGCGGCTCG 3 20 0 GCAACCGCGG 0.969914 -183 GGACGAGTCCGCCGGCCTCGATCGTGGCGA 3 80 1 GCCGGCCTCG 0.912679 -123 CGGTCTACATCCTGGCCGGGATCGCCACGA 3 101 0 CCTGGCCGGG 0.740302 -102 ACCCGACGCTGCAGATCGCGGTCTACATCC 3 119 0 GCAGATCGCG 0.92553 -84 GTTGAGTTCGGCCGCCGCGGGAAAGCAAGT 3 169 1 GCCGCCGCGG 0.970772 -34 CCGCGGGAAAGCAAGTCTGGAGGTGCGGGT 3 183 1 GCAAGTCTGG 0.822018 -20 CTGCATCGTCGCCGGCGCGGATCA 4 5 0 GCCGGCGCGG 0.979031 -48 GAAGTGTGGTGCGGGTCGGGCGGCCGGCTT 5 66 0 GCGGGTCGGG 0.921506 -235 CTGCGGCTCTGCTGCTGGGGCTACGTCGAA 5 110 0 GCTGCTGGGG 0.921671 -191 CCTGTGAAACGTAACCCGCGCGCTACCCAC 5 186 0 GTAACCCGCG 0.783588 -115 ATGCGGCACTGCAAGCGCCGGGATTCCCGC 5 236 1 GCAAGCGCCG 0.971819 -65 CAGTCCTCACCCTAGTGCGGGAATCCCGGC 5 252 0 CCTAGTGCGG 0.633201 -49 GGATGGATAGGCCGACCCGG 6 1 0 GCCGACCCGG 0.87767 -300 AAACTACGCAACAAGCCTGGATGGATGGAT 6 23 0 ACAAGCCTGG 0.574442 -278 AGAAATTTGACCAGGTCGCGCAGCTGCACG 6 67 1 CCAGGTCGCG 0.958019 -234 GGCGCGGGTTCTTGGCGGCGGTCACGGTGA 6 114 0 CTTGGCGGCG 0.6251 -187 AGCGCGATTCGCAGATCGGGGCGCGGGTTC 6 133 0 GCAGATCGGG 0.94295 -168 AAGCGGGTCTGCAGCTGTGGCTGTCGGCCT 6 188 1 GCAGCTGTGG 0.892767 -113 ACCTGTATCTGCAGCCGGCGACCGGATCTG 6 238 1 GCAGCCGGCG 0.991634 -63 TCCGGGAGGGGCAGATCCGGTCGCCGGCTG 6 249 0 GCAGATCCGG 0.904267 -52 CCCTCCCGGAACAAGCGGCGTTTAGCGCGT 6 269 1 ACAAGCGGCG 0.850488 -32 CGCCGACCTAGGACGCGCTAAACGCCG 6 284 0 CTAGGACGCG 0.330735 -17 GGTTACTGGCCCAGGAGGCGGACGTCATCG 8 71 0 CCAGGAGGCG 0.85054 -136 GTAACCCTGTGCAGCGCGGGGCAGCCAACC 8 95 1 GCAGCGCGGG 0.90238 -112 GGATTCTATGGCGGCCAGGGACGCACATTG 8 148 0 GCGGCCAGGG 0.632914 -59 GCACTATCCGCCCAGTCCGGTTCTTCTTGG 8 178 1 CCCAGTCCGG 0.702295 -29 GGGCCCCTGACCAGACGGGGAAAGCTC 10 8 0 CCAGACGGGG 0.945296 -275 CGGCTGCGCGGCAAGCGCGGGTCCGCCATG 10 40 0 GCAAGCGCGG 0.979634 -243 CGCTTGCCGCGCAGCCGGCGATGGCTACTC 10 53 1 GCAGCCGGCG 0.991634 -230 CGGCAACCCTCCAACCGCGGTGGGGTGCCC 10 100 0 CCAACCGCGG 0.942032 -183 TTGCCGGCCAGCAAGCCGGGGCTTGACGCT 10 124 1 GCAAGCCGGG 0.988812 -159 AACTCAAAGCACAACTCCGGCGGTCTCAAC 10 203 1 ACAACTCCGG 0.493486 -80 CAGATTACTAGCAGCCCGCGCGGGCCCCTA 10 251 0 GCAGCCCGCG 0.992078 -32 ********** Masking position 10 Map Score: 69.9011 Number of sites scoring better than the average of aligned sites = 40604 Number in coding regions = 38012 Number in noncoding regions = 2592 Number of orfs with sites within 600 bp upstream = 1201 Fraction of orfs with sites within 600 bp upstream = 0.192901 Motif number 3 GTGAGCACGCCGTTTGGTTGGACCTTCCCCT 1 16 1 CGTTGGTTGG 0.946177 -35 TGGACCTTCCCCTACGCTTGGCCGCGC 1 34 1 CCTAGCTTGG 0.705052 -17 GCCGCTCCCGCGGTTGCTCGGTTTCCTGGCG 3 23 1 CGGTGCTCGG 0.974047 -180 GACCGCGATCTGCAGCGTCGGGTTGTCGGGC 3 126 1 TGCACGTCGG 0.929819 -77 CGCTTCGCTCTGCATCGTCGCCGGCGCGGAT 4 13 0 TGCACGTCGC 0.808615 -40 ATCACCGGCATCATCGGTTGGCCGGCG 5 7 0 TCATGGTTGG 0.771253 -294 CGGTGATAATCGGTTGGTCGGCGATCACCGG 5 30 0 CGGTGGTCGG 0.992032 -271 ACGTCGAACACCGTACGTCGCAGAAGTGTGG 5 87 0 CCGTCGTCGC 0.883989 -214 GCAGCAGAGCCGCAGGGTCGATGACGGTGAT 5 125 1 CGCAGGTCGA 0.779606 -176 GCAACAAGCCTGGATGGATGGATAGGCCGAC 6 15 0 TGGAGGATGG 0.799087 -286 CGAATCGCGCTGGTGGCTCGGCGGCACATCG 6 152 1 TGGTGCTCGG 0.966606 -149 GTTTAGCGCGTCCTAGGTCGGCG 6 288 1 TCCTGGTCGG 0.97288 -13 GTCTTCTCGAAGGTCTGCTGGAACGGA 7 7 1 TCGAGGTCTG 0.705038 -30 CGGACGGTTGGTTCCTTCCTT 8 1 1 CGGAGGTTGG 0.966696 -206 GACGGTTGGTTCCTTCCTTGGCTGCGCCGCT 8 13 1 TCCTCCTTGG 0.660313 -194 GGGGTAATTGTCTTGGGTTGGCTGCCCCGCG 8 109 0 TCTTGGTTGG 0.897021 -98 CCTCCAACCGCGGTGGGGTGCCCCGGGTGAT 10 92 0 CGGTGGGTGC 0.750711 -191 CCACCGCGGTTGGAGGGTTGCCGGCCAGCAA 10 107 1 TGGAGGTTGC 0.940226 -176 **** ****** Masking position 10 Map Score: 18.7674 Number of sites scoring better than the average of aligned sites = 8417 Number in coding regions = 7685 Number in noncoding regions = 732 Number of orfs with sites within 600 bp upstream = 561 Fraction of orfs with sites within 600 bp upstream = 0.090106 Motif number 4 GCGGCGTGAGCACGCCGTTT 1 1 1 GCGGCGTGAG 0.878864 -50 GAGCCGCTCCCGCGGTTGCTCGGTTTCCTG 3 21 1 CGCGGTTGCT 0.952682 -182 ATCCGGCTGAGGCGGATACGCCAGGAAACC 3 42 0 GGCGGATACG 0.718529 -161 ATCCGCCTCAGCCGGATGCGCATCGGGACG 3 55 1 GCCGGATGCG 0.984782 -148 GGTCGGGCGGCCGGCTTAATCGCGGTGATA 5 53 0 CCGGCTTAAT 0.486035 -248 TGGGTAGCGCGCGGGTTACGTTTCACAGGG 5 187 1 GCGGGTTACG 0.919775 -114 TTTCACAGGGCCCGGATGGGTACCCGGATA 5 207 1 CCCGGATGGG 0.858562 -94 CGGGAATCCCGGCGCTTGCAGTGCCGCATA 5 235 0 GGCGCTTGCA 0.854933 -66 CAGCTGCAGACCCGCTTGAGGTCGATGTGC 6 175 0 CCCGCTTGAG 0.975319 -126 AGATCCGGTCGCCGGCTGCAGATACAGGTG 6 237 0 GCCGGCTGCA 0.940046 -64 CGCGCTAAACGCCGCTTGTTCCGGGAGGGG 6 268 0 GCCGCTTGTT 0.81117 -33 ATGGCGGACCCGCGCTTGCCGCGCAGCCGG 10 41 1 CGCGCTTGCC 0.799026 -242 AGTAGCCATCGCCGGCTGCGCGGCAAGCGC 10 52 0 GCCGGCTGCG 0.989985 -231 CGGGTGATGACCAGGTTGAGTAGCCATCGC 10 70 0 CCAGGTTGAG 0.80202 -213 GGTGGGGTGCCCCGGGTGATGACCAGGTTG 10 82 0 CCCGGGTGAT 0.8997 -201 GCGTCAAGCCCCGGCTTGCTGGCCGGCAAC 10 123 0 CCGGCTTGCT 0.949126 -160 CCGGTAAAGGGCCAGTTGAGACCGCCGGAG 10 217 0 GCCAGTTGAG 0.781373 -66 AGGGGCCCGCGCGGGCTGCTAGTAATCTGA 10 252 1 GCGGGCTGCT 0.948017 -31 ********** Masking position 7 Map Score: 18.1249 Number of sites scoring better than the average of aligned sites = 14732 Number in coding regions = 13619 Number in noncoding regions = 1113 Number of orfs with sites within 600 bp upstream = 744 Fraction of orfs with sites within 600 bp upstream = 0.119499 Motif number 5 GCGGCGTGAGCACGCCGTTTGGTT 1 3 1 GGCGGAGCCG 0.803152 -48 GCGCGGCCAAGCGTAGGGGAAGGTCCAACCAA 1 29 0 GCGTGGGGAG 0.828032 -22 TGCGGGCGTCGAGCCGCTCCCGCGGTT 3 6 1 GCGTGAGCGC 0.89401 -197 GATGCGCATCGGGACGAGTCCGCCGGCCTCGA 3 69 1 GGGAGAGTCG 0.916032 -134 GCGATCTGCAGCGTCGGGTTGTCGGGCCAATG 3 130 1 GCGTGGGTGT 0.69319 -73 CAATGGGCTAGGGTTGAGTTCGGCCGCCGCGG 3 157 1 GGGTGAGTCG 0.963173 -46 GCAGAGCGAAGCGATGAGGAGGAGCGGCGCAG 4 31 1 GCGAGAGGGG 0.953383 -22 GCAGAAGTGTGGTGCGGGTCGGGCGGCCGGCT 5 67 0 GGTGGGGTGG 0.869582 -234 CGGCTCTGCTGCTGGGGCTACGTCGAACACCG 5 105 0 GCTGGGCTCG 0.688174 -196 CAGAGCCGCAGGGTCGATGACGGTGATTTTTC 5 129 1 GGGTGATGCG 0.637029 -172 GGCACCGAATGCGAAGCGTGGGTAGCGCGCGG 5 169 1 GCGAGCGTGG 0.766341 -132 CGGGTTCTTGGCGGCGGTCACGGTGACATTCT 6 108 0 GCGGGGTCCG 0.922683 -193 TGCGAATCGCGCTGGTGGCTCGGCGGCACATC 6 150 1 GCTGTGGCCG 0.85772 -151 TGGGTTTACGGCGTCAAGGCCGACAGCCACAG 6 202 0 GCGTAAGGCG 0.866475 -99 GGAACAAGCGGCGTTTAGCGCGTCCTAGGTCG 6 276 1 GCGTTAGCCG 0.936197 -25 ACCGGACTGGGCGGATAGTGCGGATTCTATGG 8 167 0 GCGGTAGTCG 0.929818 -40 GGGGTCAGCTTAGAGCGCGTTCAGATCTT 9 18 0 GCTTGAGCCG 0.975159 -19 CGCCGGCTGCGCGGCAAGCGCGGGTCCGCCAT 10 41 0 GCGGAAGCCG 0.929928 -242 CCCTCCAACCGCGGTGGGGTGCCCCGGGTGAT 10 92 0 GCGGGGGGGC 0.879004 -191 CATGCGCTAGGCTTCGAGTCGGTCATGAGCGC 10 155 0 GCTTGAGTGG 0.944379 -128 CCGGAGTTGTGCTTTGAGTTGGCACTGAGTAG 10 191 0 GCTTGAGTGG 0.944391 -92 TTTACCGGCCGCTAGGGGCCCGCGCGGGCTGC 10 239 1 GCTAGGGCCG 0.942776 -44 **** **** ** Masking position 1 Map Score: 29.9454 Number of sites scoring better than the average of aligned sites = 17284 Number in coding regions = 16008 Number in noncoding regions = 1276 Number of orfs with sites within 600 bp upstream = 794 Fraction of orfs with sites within 600 bp upstream = 0.12753 Motif number 6 CCGGCTGAGGCGGATACGCCAGGAAACCGA 3 40 0 CGGATACGCC 0.96326 -163 CGGACTCGTCCCGATGCGCATCCGGCTGAG 3 61 0 CCGATGCGCA 0.931971 -142 GATGTAGACCGCGATCTGCAGCGTCGGGTT 3 120 1 GCGATCTGCA 0.769527 -83 AAAGCAAGTCTGGAGGTGCGGGT 3 190 1 TGGAGGTGCG 0.638602 -13 CCTCATCGCTTCGCTCTGCATCGTCGCCGG 4 20 0 TCGCTCTGCA 0.773296 -33 ATCGACCCTGCGGCTCTGCTGCTGGGGCTA 5 117 0 CGGCTCTGCT 0.927257 -184 GCATTCGGTGCCGATATGCCGAAAAATCAC 5 151 0 CCGATATGCC 0.964293 -150 GATGGGTACCCGGATATGCGGCACTGCAAG 5 221 1 CGGATATGCG 0.942493 -80 CCTGGATGGATGGATAGGCCGACCCGG 6 8 0 TGGATAGGCC 0.642741 -293 AACCCGCGCCCCGATCTGCGAATCGCGCTG 6 134 1 CCGATCTGCG 0.980276 -167 CCGCTTGAGGTCGATGTGCCGCCGAGCCAC 6 164 0 TCGATGTGCC 0.926131 -137 CGACCTCAAGCGGGTCTGCAGCTGTGGCTG 6 181 1 CGGGTCTGCA 0.941825 -120 AGCCGGCGACCGGATCTGCCCCTCCCGGAA 6 250 1 CGGATCTGCC 0.991441 -51 TCTGCTGGAACGGATGTCCTCTG 7 24 1 CGGATGTCCT 0.609886 -13 GCGGCAAGCGCGGGTCCGCCATGACGGGCC 10 33 0 CGGGTCCGCC 0.958489 -250 TAGCCATCGCCGGCTGCGCGGCAAGCGCGG 10 50 0 CGGCTGCGCG 0.942703 -233 ********** Masking position 3 Map Score: 21.0103 Number of sites scoring better than the average of aligned sites = 5119 Number in coding regions = 4750 Number in noncoding regions = 369 Number of orfs with sites within 600 bp upstream = 302 Fraction of orfs with sites within 600 bp upstream = 0.0485063 Motif number 7 CCATGCTGCCAGTCAAAGTGGT 2 1 1 CCATCGCCAG 0.603133 -28 GCGGGCGTCGAGCCGCTCCCGCGGTTGCTCGG 3 12 1 AGCCCCCCGC 0.463002 -191 CTGGCGTATCCGCCTCAGCCGGATGCGCATCG 3 48 1 CGCCCGCCGG 0.996144 -155 CGCATCGGGACGAGTCCGCCGGCCTCGATCGT 3 73 1 CGAGCGCCGG 0.996555 -130 GCCTCGATCGTGGCGATCCCGGCCAGGATGTA 3 94 1 TGGCACCCGG 0.706398 -109 CCCGACAACCCGACGCTGCAGATCGCGGTCTA 3 124 0 CGACCGCAGA 0.888971 -79 CTTGCTTTCCCGCGGCGGCCGAACTCAACCCT 3 166 0 CGCGCGCCGA 0.975988 -37 TCCGCGCCGGCGACGATGCAGAGCGAAGCGAT 4 14 1 CGACAGCAGA 0.663536 -39 GCCGGCCAACCGATGATGCCGGTGATCGCCGA 5 12 1 CGATAGCCGG 0.928161 -289 ATTATCACCGCGATTAAGCCGGCCGCCCGACC 5 51 1 CGATAGCCGG 0.928164 -250 AAGTGTGGTGCGGGTCGGGCGGCCGGCTTAAT 5 63 0 CGGGCGGCGG 0.932423 -238 TCACCGTCATCGACCCTGCGGCTCTGCTGCTG 5 123 0 CGACCGCGGC 0.822808 -178 CCCGGATATGCGGCACTGCAAGCGCCGGGATT 5 229 1 CGGCCGCAAG 0.91117 -72 CACCCTAGTGCGGGAATCCCGGCGCTTGCAGT 5 243 0 CGGGACCCGG 0.957342 -58 ATTCAGTCCTCGAGTCAGCAAGATGATCAGTC 5 277 0 CGAGCGCAAG 0.908168 -24 AGAATGTCACCGTGACCGCCGCCAAGAACCCG 6 108 1 CGTGCGCCGC 0.896624 -193 GATGTGCCGCCGAGCCACCAGCGCGATTCGCA 6 150 0 CGAGCCCAGC 0.81209 -151 CGACCGGATCTGCCCCTCCCGGAACAAGCGGC 6 256 1 TGCCCCCCGG 0.893772 -45 TCCTTGGCTGCGCCGCTCCCAGGTTATCCCGA 8 27 1 CGCCCCCCAG 0.946574 -180 CTGTGCAGCGCGGGGCAGCCAACCCAAGACAA 8 101 1 CGGGCGCCAA 0.907985 -106 CCGCACTATCCGCCCAGTCCGGTTCTTCTTGG 8 176 1 CGCCATCCGG 0.736509 -31 GCGGCAAGCGCGGGTCCGCCATGACGGGCCCC 10 31 0 CGGGCGCCAT 0.749971 -252 CCCGCGCTTGCCGCGCAGCCGGCGATGGCTAC 10 49 1 CCGCCGCCGG 0.970085 -234 GGGTTGCCGGCCAGCAAGCCGGGGCTTGACGC 10 121 1 CCAGAGCCGG 0.907047 -162 AAGGGCCAGTTGAGACCGCCGGAGTTGTGCTT 10 209 0 TGAGCGCCGG 0.965158 -74 **** * ***** Masking position 9 Map Score: 47.7533 Number of sites scoring better than the average of aligned sites = 33619 Number in coding regions = 31901 Number in noncoding regions = 1718 Number of orfs with sites within 600 bp upstream = 921 Fraction of orfs with sites within 600 bp upstream = 0.147928 Motif number 8 ********** No masking Map Score: -1.4755e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 9 ********** No masking Map Score: -1.4755e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 10 ********** No masking Map Score: -1.4755e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0