AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00500_mtub_reg_300.orf -o00500_mtub_300.ace -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 ppp 88 ppp #2 Rv0019c 123 hypothetical protein Rv0019c #3 Rv0020c 300 hypothetical protein Rv0020c #4 ponA 300 ponA #5 Rv0052 31 hypothetical protein Rv0052 #6 rpsF 218 rpsF #7 ssb 103 ssb #8 rpsR 41 rpsR #9 rplI 32 rplI #10 Rv0057 28 hypothetical protein Rv0057 #11 Rv0091 300 hypothetical protein Rv0091 #12 ctpA 131 ctpA #13 ctpB 143 ctpB #14 ctpI 300 ctpI #15 PE_PGRS 300 PE_PGRS #16 pepA 151 pepA #17 Rv0126 108 hypothetical protein Rv0126 #18 lpqI 300 lpqI #19 ctpH 51 ctpH #20 Rv0426c 200 hypothetical protein Rv0426c #21 def 300 def #22 echA6 26 echA6 #23 Rv0907 73 hypothetical protein Rv0907 #24 pknD 21 pknD #25 pstS 215 pstS #26 pgi 300 pgi #27 uvrD 296 uvrD #28 Rv0967 49 hypothetical protein Rv0967 #29 Rv0968 56 hypothetical protein Rv0968 #30 ctpV 55 ctpV #31 galU 100 galU #32 glgC 174 glgC #33 Rv1327c_glgP 30 Rv1327c: hypothetical protein Rv1327c, glgP: glgP #34 ctpD 241 ctpD #35 glgX 38 glgX #36 Rv1565c 98 hypothetical protein Rv1565c #37 Rv1566c 239 hypothetical protein Rv1566c #38 Rv1567c 247 hypothetical protein Rv1567c #39 Rv1781c 263 hypothetical protein Rv1781c #40 Rv1993c 52 hypothetical protein Rv1993c #41 Rv1994c_Rv1995 156 Rv1994c: hypothetical protein Rv1994c, Rv1995: hypothetical protein Rv1995 #42 Rv1996 95 hypothetical protein Rv1996 #43 ctpF 201 ctpF #44 Rv2975c 300 hypothetical protein Rv2975c #45 pgmA 69 pgmA #46 uvrD2 300 uvrD2 #47 Rv3202c 300 hypothetical protein Rv3202c #48 Rv3267 75 hypothetical protein Rv3267 #49 Rv3268 38 hypothetical protein Rv3268 #50 Rv3269 124 hypothetical protein Rv3269 #51 Rv3295 300 hypothetical protein Rv3295 #52 lhr 43 lhr #53 Rv3371 191 hypothetical protein Rv3371 #54 otsB2 41 otsB2 #55 Rv3488 300 hypothetical protein Rv3488 #56 Rv3489 81 hypothetical protein Rv3489 Motif number 1 TGCATCGTCGCCAGCGCGGG 1 1 0 CCAGCGCGGG 0.87966 -88 CCCACTTGTGGGGGCGCGCCCCCACCGCTT 1 41 0 GGGGCGCGCC 0.507633 -48 GTGGGGGGTACCCCCACCCGCTTGCGGGGG 1 66 1 CCCCCACCCG 0.88559 -23 GACGGTGGTCGGCGCGGGTCAACCCCGGCA 2 29 0 GGCGCGGGTC 0.750124 -95 ACTTTGCTGACGTGCTCGGCAGCGCGGGGC 2 70 1 CGTGCTCGGC 0.842933 -54 GCTCGGCAGCGCGGGGCCGGAGCAGACGGT 2 83 1 GCGGGGCCGG 0.812784 -41 GGGTTCAAGTCCCCCTTCGCCCACCGTACT 3 22 0 CCCCCTTCGC 0.628013 -279 GGGACTTGAACCCCCACGTCCCGAAGGACA 3 39 1 CCCCCACGTC 0.916796 -262 GCACCTGAAGCCAGCGCGTCTGCCATTCCG 3 72 1 CCAGCGCGTC 0.885698 -229 ACAGTGGTATGGTCCTCCGGTTGTTGCGGG 3 109 0 GGTCCTCCGG 0.597602 -192 GCAGCGGATGGGGCCTGCGGCTACTACAGT 3 134 0 GGGCCTGCGG 0.737696 -167 ACTGAGCCCGCCGGCGCCCCTGGCAGCGGA 3 156 0 CCGGCGCCCC 0.504391 -145 CGGAAAGGGCCGGCCACGCCCACTGAGCCC 3 177 0 CGGCCACGCC 0.977853 -124 CTTTCAGCGCTCGCCTCACTGTTCTGG 3 284 0 CGCTCGCCTC 0.844548 -17 TCGATGGAGTCCGCGTGCGGAGCCGATCGG 4 13 0 CCGCGTGCGG 0.707755 -288 GGCGCGCCGTCGAGCGCGGCCTTGACCGCC 4 43 0 CGAGCGCGGC 0.93786 -258 GGGGGCATCGGCGGCGCGCCGTCGAGCGCG 4 55 0 GCGGCGCGCC 0.504965 -246 GCCGATGCCCCCGCCGCGCGACCCGCTCGA 4 73 1 CCGCCGCGCG 0.521825 -228 GCCAACGCGGCCGTGACCTCCTCGAGCGGG 4 94 0 CCGTGACCTC 0.573563 -207 GAGGTCACGGCCGCGTTGGCCGCCCCGCCC 4 104 1 CCGCGTTGGC 0.681483 -197 GGCGGTTTACCGGGCGGGGCGGCCAACGCG 4 115 0 CGGGCGGGGC 0.510292 -186 GCCCGGTAAACCGCCGCGGGGGGATCAGCT 4 130 1 CCGCCGCGGG 0.528126 -171 CGGCCCCGGTGGGCGACGTCTGCCACCAAG 4 158 0 GGGCGACGTC 0.844369 -143 TCGCCCACCGGGGCCGCCCGGGCCCCCCGG 4 172 1 GGGCCGCCCG 0.502573 -129 TCCGGACGAACCGGGGGGCCCGGGCGGCCC 4 182 0 CCGGGGGGCC 0.89186 -119 GACAGCCTGCCGGCCGGCTGCCCCAACCGA 4 210 1 CGGCCGGCTG 0.875082 -91 TGGACTTGCCCCGGGTCGGCCAGATCAACT 4 243 1 CCGGGTCGGC 0.933735 -58 GAAATGGATACGGCGTTCGCTGTACCTCAC 4 274 1 CGGCGTTCGC 0.641256 -27 CGCGGTTGGCCCCTACGAGG 5 1 1 CGCGGTTGGC 0.518079 -31 CCGCTGCAGCACCTCGTAGGGGCCA 5 17 0 GCAGCACCTC 0.468504 -15 GTGTCGCGAACGGCGAGGCCTATCGCGAAC 6 14 0 CGGCGAGGCC 0.880086 -205 GTGCGACGATCCGCGGCGTGTCGTGTGCGC 6 51 0 CCGCGGCGTG 0.945354 -168 TGCCGACCAGGCACCACCGCACTCCAGGCT 6 88 0 GCACCACCGC 0.74154 -131 CGCAGTCGAGGGCTCTCGTGTAGCCTGGGC 6 122 1 GGCTCTCGTG 0.429891 -97 CGTGGCAGGAGGGTCGCCTGCGTCGGCAAC 6 154 0 GGGTCGCCTG 0.765887 -65 CACGGATCGACCGTGGCCGCACACGACCAC 6 180 1 CCGTGGCCGC 0.901128 -39 CCTGGGTTCGGCGGCTGGTCGTGTTCTTCT 7 66 0 GCGGCTGGTC 0.631512 -38 TTTCCTCCTGCGTCCGCCTGGGTTCGGCGG 7 82 0 CGTCCGCCTG 0.814669 -22 AGAGCTCTACCGACCGCGGCGTGGTCGCGC 11 64 1 CGACCGCGGC 0.962588 -237 CAGTGCGTCGCGGGCACGCGCTGTGATTGG 11 93 0 CGGGCACGCG 0.933319 -208 TGCAGGCCGTGCTGCGCGCCAGGCGCCGCG 11 121 1 GCTGCGCGCC 0.817209 -180 TGCGCGCCAGGCGCCGCGGCCAGCGCTCTG 11 133 1 GCGCCGCGGC 0.53952 -168 CCTCAACAACGCTCCACGCCTCTGCGCATA 11 173 0 GCTCCACGCC 0.741617 -128 GTTGAGGTCAGGCCCGCGCCGAGGGCCGCG 11 196 1 GGCCCGCGCC 0.520193 -105 ACAATCGCGCGCGGCGCGGGAGAGCCGCTA 11 237 1 GCGGCGCGGG 0.49895 -64 CTCCAATCGCCGGTCACCGGCGGCTAGCGG 11 261 0 CGGTCACCGG 0.865008 -40 GACGACTATCCGCCGGTGCGTTCACCGCGT 12 12 1 CGCCGGTGCG 0.74195 -120 TGCGTTCACCGCGTCAGGCGGCTTCGGTGA 12 28 1 GCGTCAGGCG 0.4746 -104 CGCTCAACATCGGCGGCGGCATGACCAAGT 12 78 0 CGGCGGCGGC 0.981814 -54 GGAGGCCACAGGTCGGCCGGAAGTGAGGAG 12 107 1 GGTCGGCCGG 0.693005 -25 GCCAGTGCATCCAGCGGGCCATAGGGAACC 13 62 1 CCAGCGGGCC 0.79541 -82 ACGACTTGTAGGCTGACGGGTGCAAATACG 13 107 1 GGCTGACGGG 0.510738 -37 GGCCCTCCTCGGATCGGCGT 13 134 0 GGCCCTCCTC 0.773483 -10 TCAGTGGATGCGGTGGGGTCCGTGAATCAG 14 17 0 CGGTGGGGTC 0.665433 -284 GCGCCGGTGGCGGGCACGTGAAACCGACCC 14 97 0 CGGGCACGTG 0.931655 -204 GTGCCCGCCACCGGCGCGTCACGGGCCCGC 14 110 1 CCGGCGCGTC 0.954259 -191 AGCTTGAGTACGGGCGGGCCCGTGACGCGC 14 123 0 CGGGCGGGCC 0.50608 -178 CTGCCTTCACCGGCGACCTCACCCGGCGAA 14 204 1 CGGCGACCTC 0.88616 -97 TGGCGTATCAGCGCCATGTCTACCGACTTG 14 241 0 GCGCCATGTC 0.530403 -60 TTCGCGACGTCGAGCGGCGGCTG 15 4 0 CGAGCGGCGG 0.683524 -297 AGCCCGACAGGGTGCGCGTGCACCTGGCCC 15 85 1 GGTGCGCGTG 0.700439 -216 GCGTGCACCTGGCCCGGGTGGTAATCCATT 15 100 1 GGCCCGGGTG 0.746874 -201 AATCCATTGACGCGCACGGCAATTGGCCGG 15 122 1 CGCGCACGGC 0.943666 -179 GGCTCGGTCTCGGTCTGCGGATACCGCACT 15 150 1 CGGTCTGCGG 0.59618 -151 GTAGCGCGACCCGGCACCGCACACGGCCTT 15 202 0 CCGGCACCGC 0.935898 -99 CTCCCCAACCCGCCCGCCCCACCACCGGCG 15 274 0 CGCCCGCCCC 0.516646 -27 ATGGCCATGCCCCGGACCGGCACCGAAACC 16 25 0 CCCGGACCGG 0.808268 -127 CAGCCTTAAGGGTCCGGGCGGCAGGATTTT 16 91 0 GGTCCGGGCG 0.636446 -61 TCCAATTGGCCGGCCGGCGGGTGGTATCCG 17 19 0 CGGCCGGCGG 0.503164 -90 CGGCAATCACGGCTGGCGCCAATCCAATTG 17 41 0 GGCTGGCGCC 0.785738 -68 GGAACTCGGGGGCTCACGCGGCAATCACGG 17 59 0 GGCTCACGCG 0.673089 -50 CACGATGCCACGCGCACGGGAGACGGAACT 17 83 0 CGCGCACGGG 0.907472 -26 CGGGTCGCGGGGCTAGCTACG 18 2 1 GGGTCGCGGG 0.885755 -299 AACCGCCACTCCCCGGGGGCGATCCGTCGT 18 64 0 CCCCGGGGGC 0.894026 -237 CCGAAGATCGCGGCCGCGCCCAGCAACAGA 18 123 1 CGGCCGCGCC 0.555564 -178 ATCGTCGCGCCCGCCGCCGCAAGCGTGGTG 18 158 0 CCGCCGCCGC 0.531782 -143 ATCGGTGGCTCCTCGACGGCTGTGGGTGCG 18 195 1 CCTCGACGGC 0.757786 -106 CCGGGTTGGGGGGCCAGGCCCACGCTTCTG 18 250 0 GGGCCAGGCC 0.876287 -51 CGCATACGCTCCGGGTTGGGGGGCCAGGCC 18 260 0 CCGGGTTGGG 0.526502 -41 CGGCAGTCGCGCCGCACGCGGCAGTTGCGC 20 29 1 GCCGCACGCG 0.785572 -172 GTCTCAGTCAGGGCGGCGTGGCAGGCTTGC 20 62 1 GGGCGGCGTG 0.909705 -139 ACGCCAGGAACCGTCGGGCGGTAATCCTGC 21 63 1 CCGTCGGGCG 0.798001 -238 GGAGCATGAGCCGGCGCGCCGCGATCGGCA 21 124 0 CCGGCGCGCC 0.513096 -177 CGCGACATGCCGGCCAGCCGTCGTGTGGTT 21 171 1 CGGCCAGCCG 0.85958 -130 GCGATGATGCCCGCCGCCCCGCGGCGCGCC 21 209 1 CCGCCGCCCC 0.524798 -92 CCGCCGCCCCGCGGCGCGCCTAAGCCGATT 21 219 1 GCGGCGCGCC 0.504965 -82 AGCCGATTGCCCGCCTCCTCAGCCCGCCGC 21 241 1 CCGCCTCCTC 0.917732 -60 CCTCCTCAGCCCGCCGCCTCGCGGCGCGTA 21 254 1 CCGCCGCCTC 0.961397 -47 CGGCGCGTATCGTCGGCGCGCTTAAGCTAG 21 275 1 CGTCGGCGCG 0.864496 -26 TTCCCCGCAGCGCCCGGCTAATGGTG 23 7 1 GCAGCGCCCG 0.670318 -67 TGATCGCCTCGGCTCGCCCCCTAGCACCAT 23 31 0 GGCTCGCCCC 0.791387 -43 TACTGAGGGTCGACGGCGCGCTTTGTCCAA 25 46 0 CGACGGCGCG 0.893402 -170 AGTATCAGCGGCCCCTCCTGAACGCTAGGA 25 72 1 GCCCCTCCTG 0.649905 -144 CGATGCACAACGGTGACGGCTCGAATACCG 25 123 1 CGGTGACGGC 0.862502 -93 AGCCACCGACCCGGGGTCGGTATTCGAGCC 25 140 0 CCGGGGTCGG 0.717161 -76 GGTGGCTCGGCGACCACCGGTGGCGAGTGG 25 163 1 CGACCACCGG 0.840241 -53 CTCCTCTCGAGGGGGTCGTGGTGGCGGATC 25 192 0 GGGGGTCGTG 0.692228 -24 GCTTTGCAAAGCCTGTCGCC 26 1 0 GCCTGTCGCC 0.461326 -300 GAAGTTGAACCGCCGTTGCGCCGCTTGGTA 26 34 0 CGCCGTTGCG 0.456733 -267 GGTTCAACTTCCCGGATGGCGAAACCCACA 26 53 1 CCCGGATGGC 0.518363 -248 CACGCCAGTACGCCCAGGTGTGGGTTTCGC 26 71 0 CGCCCAGGTG 0.730641 -230 GGCCTGCAATGGCGCACGCCAGTACGCCCA 26 85 0 GGCGCACGCC 0.881432 -216 TGACCGTCGCCCAGCACCCGCTGCAGATCA 26 123 0 CCAGCACCCG 0.737525 -178 CGACGGTCAGCGGCCTCGGCGGGGGCCGAG 26 144 1 CGGCCTCGGC 0.977179 -157 TGCGCTCTCGCGGCCTCGGCCCCCGCCGAG 26 158 0 CGGCCTCGGC 0.977179 -143 TCGGCGATGCGGGCCTGCGCTCTCGCGGCC 26 173 0 GGGCCTGCGC 0.81148 -128 CTTTAGTTATCGTGCTCGGCGGCACTCGCC 26 225 0 CGTGCTCGGC 0.842933 -76 TTCCGGATTCGGGGCTCGTCTCTTGTGTGA 27 24 0 GGGGCTCGTC 0.88139 -273 ATCCGGAAGCGGACCACGGGGCTCTGCGAA 27 46 1 GGACCACGGG 0.785688 -251 AGCTAGACCACGGGCACCGCTGGCCGGTAC 27 79 1 CGGGCACCGC 0.946059 -218 TCGTGCTCAACGCGCAGCGCCGATTTTTCT 27 113 0 CGCGCAGCGC 0.795078 -184 AGTTTTTGCGCGGGCGCGTCCGTTGATGGC 27 152 0 CGGGCGCGTC 0.961345 -145 ACCCAAAATTGGGTGGTGGCGCCGAAGGAC 27 197 1 GGGTGGTGGC 0.479738 -100 GAAGGACCTGCCGCGTGGCGATGAGCCTGG 27 220 1 CCGCGTGGCG 0.760932 -77 ACGAGTCGGCGGACCGCGGCATAGCCTGGC 27 249 0 GGACCGCGGC 0.926792 -48 TCCAAACTTACCGCCGCGCGGCGACGAGTC 27 272 0 CCGCCGCGCG 0.521825 -25 TGCCCCTAATCCCTCACCCGTTCATGGTAT 28 26 0 CCCTCACCCG 0.702253 -24 CGAGCGCCGGACTCCGGTGT 29 1 1 CGAGCGCCGG 0.840639 -56 CCGCCCCGACGCGTTGGAGACCA 30 43 0 CCCCGACGCG 0.878977 -13 TCGCGCGGGACGGCCGGGGCTGTGTCATCG 31 19 0 CGGCCGGGGC 0.548738 -82 GCTGTCCCGGCGCTCGCGCGGGACGGCCGG 31 32 0 CGCTCGCGCG 0.875637 -69 TCTTCGTTGGCGCTGTCCCGGCGCTCGCGC 31 43 0 CGCTGTCCCG 0.511613 -58 CCCGCCACGCGGGCCGCCCCGTCACCGCAC 32 24 0 GGGCCGCCCC 0.516376 -151 GCCTCCGCCTCCTCCTCGGCCCGCCACGCG 32 43 0 CCTCCTCGGC 0.848832 -132 GGGTGCTGTGCCGCCTCCGCCTCCTCCTCG 32 55 0 CCGCCTCCGC 0.956803 -120 AGAGCAGTAGCCAGGGGCGGATTCCCCTTG 32 122 1 CCAGGGGCGG 0.528786 -53 GCAGTGGTTTGCGGGGGCCGATAGGTTTGA 32 152 1 GCGGGGGCCG 0.614358 -23 CTGGCACCTCCGCAATGAAGAGC 34 4 1 GCACCTCCGC 0.695921 -238 CGATAAGATACGTCGGTCGCTAGCTCTTCA 34 26 0 CGTCGGTCGC 0.452437 -216 TTATCGCGATCCAGCGGCCGCTTCACCCGT 34 50 1 CCAGCGGCCG 0.600682 -192 AACCATTCTGGCGGGGTGCGTTACCCCGAA 34 80 0 GCGGGGTGCG 0.607841 -162 CGTTAGTGGCCCCGCTTGCCTTGTGCCAGT 34 114 1 CCCGCTTGCC 0.628736 -128 TTTGGTCGTTCCTGCGTCCCTACACTCGGT 34 181 1 CCTGCGTCCC 0.498364 -61 TCCGGCGGCCTCACGACAGGGG 34 230 0 CGGCGGCCTC 0.955015 -12 TCCAGGTTCTCCGGCGGGTGTAGGCG 35 7 0 CCGGCGGGTG 0.840573 -32 CCTCCCAAACCCGCCTCCTGCTTCCCGCTG 36 31 1 CCGCCTCCTG 0.883639 -68 CCTCCTGCTTCCCGCTGCTCAGCGCGCGAA 36 44 1 CCCGCTGCTC 0.563768 -55 CCAGCCTCCTGCTTCGCGCGCTGAGCAGCG 36 56 0 GCTTCGCGCG 0.53562 -43 CAACAGATGCCGGCCGCGTCCATAGCTGGC 37 105 0 CGGCCGCGTC 0.980044 -135 TTACTGGGATGGGCCGTGGCGTGGCTGCAT 38 25 0 GGGCCGTGGC 0.895424 -223 CATGCATGCTCCCCGATGGCAGAGGTTTTG 38 62 0 CCCCGATGGC 0.585046 -186 CAGGCTGATTCGGCGGTGCCATGCATGCAT 38 85 0 CGGCGGTGCC 0.889316 -163 GGCACCGAATCCCGGTCGGCTCTAGACGAG 38 135 1 CCCGGTCGGC 0.881057 -113 GTCCGCTCGTCGGGCTCGTCTAGAGCCGAC 38 149 0 CGGGCTCGTC 0.941101 -99 CGAGCGGACACCCCCACGGGTACTCACGCT 38 170 1 CCCCCACGGG 0.935298 -78 GATCACCTTCCGGTCTGCTCAGAACACCTG 39 15 1 CGGTCTGCTC 0.466068 -249 TTTGCCACTGCGCGGATCCCCCAAGGATTC 39 61 1 CGCGGATCCC 0.440846 -203 CAGATTCCTGCGCTCGCCCGCACACGGGTG 39 224 1 CGCTCGCCCG 0.809912 -40 CATCTTGCGTCCGGCACCCGTGTGCGGGCG 39 238 0 CCGGCACCCG 0.874317 -26 AGATATGATCGGCGCGCGTCACAAGCTTCC 41 77 0 GGCGCGCGTC 0.889428 -80 GGGTTAGGGACCATCGCCTCCTGACGCGAT 42 27 1 CCATCGCCTC 0.594502 -69 CCAGCTGTCGCGATCGCGTCAGGAGGCGAT 42 39 0 CGATCGCGTC 0.733455 -57 GCGCGGGTGGGCACCACCCGAGCAGATCGC 43 19 0 GCACCACCCG 0.631346 -183 CGGGGCTTTCCGCGCGGGTGGGCACCACCC 43 30 0 CGCGCGGGTG 0.783962 -172 CGCGCGGAAAGCCCCGTCCGAACCGTGATT 43 44 1 GCCCCGTCCG 0.566901 -158 GGGCAACGTCGGGCCGGGCCAGCAGCGCTG 43 74 1 GGGCCGGGCC 0.51739 -128 AGGGACCTACGGTCCAGCGCTGCTGGCCCG 43 88 0 GGTCCAGCGC 0.441234 -114 CCCTGCCTAACGGTCGCCGGTGTGGATCAG 43 138 0 CGGTCGCCGG 0.896164 -64 GGGAAAGGCCCCGGCTTCGGCAAGTCGGTG 44 16 0 CCGGCTTCGG 0.625271 -285 CTCTTAGGTCCGGCGACCTGGCCGGGACGC 44 88 1 CGGCGACCTG 0.841262 -213 GGCGACCTGGCCGGGACGCCTACGTGTAGC 44 99 1 CCGGGACGCC 0.939345 -202 ATGTCAGCACCCGCCTTGGCCGGGAGAGCG 44 193 1 CCGCCTTGGC 0.828004 -108 GCCGGGAGAGCGGCGTCGTGACCGTGCTGT 44 211 1 CGGCGTCGTG 0.863691 -90 GGTTAGGCTCGGGGCGCGGGCTGGCGCGGA 44 251 1 GGGGCGCGGG 0.501306 -50 CAACACACCTCCTCCGCGCCAGCCCGCGCC 44 263 0 CCTCCGCGCC 0.934644 -38 TACAACACACCTCCTCCGCAACACACCTC 44 282 0 CCTCCTCCGC 0.789307 -19 CCGACGAACTCCGCGGCCGCACGGTTGTGT 46 48 1 CCGCGGCCGC 0.964751 -253 TGTTCGATGTCGACCTCGTCGTAAGCGATT 46 75 1 CGACCTCGTC 0.788038 -226 CTCAAAACAGCGCTCACGGCCAACCGAATC 46 101 0 CGCTCACGGC 0.881204 -200 GCCGCCACACCGCCCGGGTCGTCGCCGCGC 46 202 0 CGCCCGGGTC 0.904637 -99 GGGCGGTGTGGCGGCTCGGCAGTTGTTCAT 46 217 1 GCGGCTCGGC 0.9154 -84 CATGTCGCACGCCCCACGGCGTGGCGACAC 46 244 1 GCCCCACGGC 0.917898 -57 GATGACAGACCGGGCGTGTCGCCACGCCGT 46 259 0 CGGGCGTGTC 0.863625 -42 TCTTCGTCGTCGGCGACCGGAACGACGAAG 47 29 1 CGGCGACCGG 0.929394 -272 GCTTGGTCGACGACGTCGGCTTCGCTGGCG 47 59 1 CGACGTCGGC 0.804134 -242 ACGTCGGCTTCGCTGGCGTCTCGGTCGCCG 47 71 1 CGCTGGCGTC 0.783587 -230 GTCTCGGTCGCCGGCGCCGCCGCTGAGGTA 47 88 1 CCGGCGCCGC 0.506957 -213 GCACGCCCTTGCTCCACCGCATCGGCTTCG 47 155 1 GCTCCACCGC 0.68592 -146 TTCGTCCTGTGGACCGCCGCCTACGACCGC 47 190 1 GGACCGCCGC 0.890276 -111 CCGCCGCCTACGACCGCCGCCATGGTAGCC 47 203 1 CGACCGCCGC 0.942254 -98 TGGCACGCCTCGGGCACGCCGGGGTTGGCT 48 22 1 CGGGCACGCC 0.960927 -54 TGTAACGGCGCCCTGTCGGGTAGCCAACCC 48 43 0 CCCTGTCGGG 0.588478 -33 CGGATCCAGGATCGCCCCGCTCAGGGTG 49 21 0 GGATCGCCCC 0.650282 -18 CAGGCCGCGTCCAGCAGGCGAAGGCATCAG 50 13 1 CCAGCAGGCG 0.548856 -112 TGTAATTGCAGCGGCAGCTCGTTGCAGTGA 50 82 0 GCGGCAGCTC 0.589028 -43 TCGCCGACCTGCCGCGCCTCATCCGACTTC 51 18 0 GCCGCGCCTC 0.801617 -283 CGCGGCAGGTCGGCGATGCGTTGGAGATTG 51 32 1 CGGCGATGCG 0.66723 -269 TTGGAGACGTCGGCCGCGTCACGTTTGACG 51 59 1 CGGCCGCGTC 0.980044 -242 CTAGGAACGTCGACCGCGTCGTCAAACGTG 51 78 0 CGACCGCGTC 0.927088 -223 TGCCGCGTATCGGCGACGGCTTTGTCGCGA 51 119 0 CGGCGACGGC 0.96665 -182 TGCGACACCACCGGCTCCGCCAGATATCGC 51 187 0 CCGGCTCCGC 0.927362 -114 GGTGGGTCTGCCCCGACGTCCCTGCTGCGA 51 212 0 CCCCGACGTC 0.83044 -89 GTGGTTCTTTCGGTGGGGTGGGTCTGCCCC 51 228 0 CGGTGGGGTG 0.575213 -73 ACCACCACCACCTGCTCGCCTAGCCGAACG 51 253 1 CCTGCTCGCC 0.78982 -48 CCGCCCAGCTCGGCGGCCCGTTGCTCCACC 53 13 1 CGGCGGCCCG 0.941889 -179 GCGGCCCGTTGCTCCACCCCACATTCCACA 53 25 1 GCTCCACCCC 0.656934 -167 ATAAGTGTCCGCCGGACCGCACCGGAAGCA 53 138 0 GCCGGACCGC 0.742315 -54 GGTCGCAAAACGACGGTGGGGACTTGTC 53 174 1 CGACGGTGGG 0.525555 -18 CAGCCCAATTCGGGCTCCTCCCCCCATCAA 55 78 1 CGGGCTCCTC 0.914227 -223 ATCAATCATTCGGTGGCGCGAAGTTCACCA 55 103 1 CGGTGGCGCG 0.91079 -198 GTCCCGGACACGCTCACGCGAACTACCTGC 55 135 1 CGCTCACGCG 0.815749 -166 CCGCCGGCTACCCGCACCCCGTAGAATCGC 55 247 1 CCCGCACCCC 0.876949 -54 CGATGGGTACCGTCGACGCGGT 56 3 0 CGTCGACGCG 0.700485 -79 CGGTACCCATCGCCGGGGCCAAACCGTGAC 56 21 1 CGCCGGGGCC 0.900517 -61 CAGCGCAATGCGGGCTTGGCTTACAGTTAT 56 59 1 CGGGCTTGGC 0.821463 -23 ********** Masking position 5 Map Score: 268.937 Number of sites scoring better than the average of aligned sites = 176439 Number in coding regions = 165347 Number in noncoding regions = 11092 Number of orfs with sites within 600 bp upstream = 1845 Fraction of orfs with sites within 600 bp upstream = 0.296338 Motif number 2 CCCGCGCTGGCGACGATGCAGAGCGC 1 7 1 CTGGCGACGA 0.831149 -82 TGGGGGCGCGCCCCCACCGCTTCTCTGCGC 1 33 0 CCCCCACCGC 0.921687 -56 CCGGGGTTGACCCGCGCCGACCACCGTCAA 2 31 1 CCCGCGCCGA 0.806899 -93 CTCCGGCCCCGCGCTGCCGAGCACGTCAGC 2 75 0 GCGCTGCCGA 0.866837 -49 CGCGGGGCCGGAGCAGACGGTGCAGGACGG 2 92 1 GAGCAGACGG 0.408331 -32 GCTGCCAGGGGCGCCGGCGGGCTCAGTGGG 3 159 1 GCGCCGGCGG 0.492688 -142 GCGGAAAGGGCCGGCCACGCCCACTGAGCC 3 178 0 CCGGCCACGC 0.684195 -123 CGTTTGCCTTGCGCCGACGATGCACCAGAA 3 260 1 GCGCCGACGA 0.9797 -41 GAGTCCGCGTGCGGAGCCGATCGGTC 4 7 0 GCGGAGCCGA 0.644424 -294 GCTCGACGGCGCGCCGCCGATGCCCCCGCC 4 58 1 GCGCCGCCGA 0.761518 -243 GCCGCCGATGCCCCCGCCGCGCGACCCGCT 4 70 1 CCCCCGCCGC 0.913509 -231 GCCCGGTAAACCGCCGCGGGGGGATCAGCT 4 130 1 CCGCCGCGGG 0.544665 -171 GGGGGCCCGGGCGGCCCCGGTGGGCGACGT 4 169 0 GCGGCCCCGG 0.535495 -132 CGGCCGGCTGCCCCAACCGAGGGTGGACTT 4 220 1 CCCCAACCGA 0.5082 -81 CGCGGTTGGCCCCTACGAGGTGCTGCAG 5 9 1 GCCCCTACGA 0.557799 -23 CTCGCCGTTCGCGACACTGACATTGCGCAC 6 27 1 GCGACACTGA 0.501347 -192 GCCGCGGATCGTCGCACCGGGTTAAGCCTG 6 64 1 GTCGCACCGG 0.479915 -155 TGCCGACCAGGCACCACCGCACTCCAGGCT 6 88 0 GCACCACCGC 0.520352 -131 GTCGGCATTTTCGCAGTCGAGGGCTCTCGT 6 111 1 TCGCAGTCGA 0.203222 -108 CCTGGGCGAGTTGCCGACGCAGGCGACCCT 6 145 1 TTGCCGACGC 0.441523 -74 GTGGTCGTGTGCGGCCACGGTCGATCCGTG 6 180 0 GCGGCCACGG 0.700376 -39 CGTAACCGCACCGACAGCGAACAGCCAGTG 7 24 0 CCGACAGCGA 0.241282 -80 AGAACACGACCAGCCGCCGAACCCAGGCGG 7 69 1 CAGCCGCCGA 0.96737 -35 ACAGCGCGTGCCCGCGACGCACTGCAGGCC 11 99 1 CCCGCGACGC 0.873405 -202 TGCTGCGCGCCAGGCGCCGCGGCCAGCGCT 11 130 1 CAGGCGCCGC 0.656073 -171 TGAGGTCAGGCCCGCGCCGAGGGCCGCGAC 11 198 1 CCCGCGCCGA 0.806899 -103 TAGCGGCTCTCCCGCGCCGCGCGCGATTGT 11 237 0 CCCGCGCCGC 0.569693 -64 GGAGAGCCGCTAGCCGCCGGTGACCGGCGA 11 255 1 TAGCCGCCGG 0.734985 -46 ACTCACCTCACCGAAGCCGCCTGACGCGGT 12 35 0 CCGAAGCCGC 0.517463 -97 CTTGGTCATGCCGCCGCCGATGTTGAGCGG 12 79 1 CCGCCGCCGA 0.769285 -53 TCCCAACGACGCGGCAACGCCTGGCTAACG 14 61 0 GCGGCAACGC 0.77983 -240 TTTCACGTGCCCGCCACCGGCGCGTCACGG 14 104 1 CCGCCACCGG 0.800814 -197 TACGGGCGGGCCCGTGACGCGCCGGTGGCG 14 115 0 CCCGTGACGC 0.463135 -186 GCGATGAATGCAGACGCCGTGTCGGATCTA 14 152 0 CAGACGCCGT 0.461376 -149 CCTTCAACTACCGATACCGCGCCTAATCCT 14 273 0 CCGATACCGC 0.377866 -28 CAGCCGCCGCTCGACGTCGC 15 1 1 CAGCCGCCGC 0.941393 -300 TCCAGACTTCGCGACGTCGAGCGGCGGCTG 15 11 0 GCGACGTCGA 0.638366 -290 GTAGCGCGACCCGGCACCGCACACGGCCTT 15 202 0 CCGGCACCGC 0.513088 -99 ACAATGTCGTCCGCCAACGAGCGTGTTCGC 15 247 1 CCGCCAACGA 0.948186 -54 ATGCCCCGGACCGGCACCGAAACCCTCGTT 16 19 0 CCGGCACCGA 0.64241 -133 GCGGGTGGTATCCGCGACGAAA 17 3 0 TCCGCGACGA 0.596362 -106 TCGCGGATACCACCCGCCGGCCGGCCAATT 17 16 1 CACCCGCCGG 0.874375 -93 ATTGCCGCGTGAGCCCCCGAGTTCCGTCTC 17 64 1 GAGCCCCCGA 0.703555 -45 CGGTTGAGCACTGATGACGACGGATCGCCC 18 48 1 CTGATGACGA 0.120251 -253 CTGTTGCTGGGCGCGGCCGCGATCTTCGGA 18 122 0 GCGCGGCCGC 0.684621 -179 ATCGTCGCGCCCGCCGCCGCAAGCGTGGTG 18 158 0 CCGCCGCCGC 0.553175 -143 AGCCGTCGAGGAGCCACCGATGAACCGGAT 18 186 0 GAGCCACCGA 0.903057 -115 GCCGCACCCACAGCCGTCGAGGAGCCACCG 18 197 0 CAGCCGTCGA 0.820595 -104 CGGAGCGTATGCGCCACCGTGACAGCATGT 18 277 1 GCGCCACCGT 0.880029 -24 TCTGGCGGCGTTGAGCAACTCTTG 19 5 1 GCGGCGTTGA 0.577172 -47 GTAGTCGGCAGTCGCGCCGCACGCGGCAGT 20 24 1 GTCGCGCCGC 0.793618 -177 CGCCCTGACTGAGACAACGCGCAACTGCCG 20 47 0 GAGACAACGC 0.367004 -154 ATGCAAGCCTGCCACGCCGCCCTGACTGAG 20 64 0 GCCACGCCGC 0.727809 -137 TGCATTCGCACCGCTGACGAGATTTCTGTT 20 107 0 CCGCTGACGA 0.855437 -94 CGCCGAAGAAGCGCCTACGTAGGCCAAGTC 21 22 0 GCGCCTACGT 0.365818 -279 TGGTTCACACCCGGCGATGATGCCCGCCGC 21 196 1 CCGGCGATGA 0.770554 -105 CGGCTTAGGCGCGCCGCGGGGCGGCGGGCA 21 216 0 GCGCCGCGGG 0.553233 -85 CCTCCTCAGCCCGCCGCCTCGCGGCGCGTA 21 254 1 CCGCCGCCTC 0.426705 -47 TAGCTTAAGCGCGCCGACGATACGCGCCGC 21 274 0 GCGCCGACGA 0.9797 -27 TGGACAAAGCGCGCCGTCGACCCTCAGTAT 25 47 1 GCGCCGTCGA 0.860166 -169 GGCTCGAATACCGACCCCGGGTCGGTGGCT 25 140 1 CCGACCCCGG 0.575077 -76 GGTGGTCGCCGAGCCACCGACCCGGGGTCG 25 151 0 GAGCCACCGA 0.903057 -65 GCGGATCCACTCGCCACCGGTGGTCGCCGA 25 169 0 TCGCCACCGG 0.67266 -47 GGAAGTTGAACCGCCGTTGCGCCGCTTGGT 26 35 0 CCGCCGTTGC 0.646229 -266 GTACTGGCGTGCGCCATTGCAGGCCATGCT 26 90 1 GCGCCATTGC 0.36284 -211 GCGGCCTCGGCCCCCGCCGAGGCCGCTGAC 26 149 0 CCCCCGCCGA 0.975492 -152 AGAGCGCAGGCCCGCATCGCCGAGCCTGTA 26 180 1 CCCGCATCGC 0.505646 -121 CAAACGGCGAGTGCCGCCGAGCACGATAAC 26 220 1 GTGCCGCCGA 0.96322 -81 GGCGAAGACAGCGGCTCTGATCGACGCCAC 26 259 1 GCGGCTCTGA 0.387434 -42 ATGCCGTGGAGTGGCGTCGATCAGAGCCGC 26 269 0 GTGGCGTCGA 0.702187 -32 GCCCCGTGGTCCGCTTCCGGATTCGGGGCT 27 38 0 CCGCTTCCGG 0.420416 -259 TGCTCAACGCGCAGCGCCGATTTTTCTACG 27 110 0 GCAGCGCCGA 0.533819 -187 AAATTGGGTGGTGGCGCCGAAGGACCTGCC 27 202 1 GTGGCGCCGA 0.92474 -95 GACCTGCCGCGTGGCGATGAGCCTGGCCAG 27 224 1 GTGGCGATGA 0.294013 -73 TTACCGCCGCGCGGCGACGAGTCGGCGGAC 27 265 0 GCGGCGACGA 0.803979 -32 CGTTCTTTCTGACACCGACGTCTCGCTG 30 9 1 CTGACACCGA 0.557765 -47 CCGCCCCGACGCGTTGGAGACC 30 44 0 GCCCCGACGC 0.949878 -12 CGCCGGGACAGCGCCAACGAAGAGGCGGGC 31 50 1 GCGCCAACGA 0.954528 -51 ACCCCGCACCGTAGTGCGGTGA 32 3 1 CCCGCACCGT 0.536798 -172 GCACCGTAGTGCGGTGACGGGGCGGCCCGC 32 16 1 GCGGTGACGG 0.581298 -159 GGGTGCTGTGCCGCCTCCGCCTCCTCCTCG 32 55 0 CCGCCTCCGC 0.751692 -120 GGCGGCACAGCACCCGTCGAACGGGGCCAA 32 70 1 CACCCGTCGA 0.55333 -105 CGCCTACACCCGCCGGAGAACCTGGA 35 7 1 CACCCGCCGG 0.874375 -32 GCCAAAACCTCTGCCATCGGGGAGCATGCA 38 60 1 CTGCCATCGG 0.40003 -188 TGCATGCATGGCACCGCCGAATCAGCCTGA 38 86 1 GCACCGCCGA 0.815422 -162 CAGCCCGATGCTGGCACCGAATCCCGGTCG 38 123 1 CTGGCACCGA 0.786343 -125 GCCCAGTGAAGACACGACGAATCCTTGGGG 39 79 0 GACACGACGA 0.420079 -185 CAACCGTGCTGTGCTGACGGAAGGCTCAGA 39 198 1 GTGCTGACGG 0.368488 -66 GCAGCAGACGACACGACTTGT 40 2 1 CAGCAGACGA 0.427627 -51 TAACCGATATCCCGAGCCGATAGCTGGCGG 41 17 0 CCCGAGCCGA 0.713126 -140 TCGTGAGTTGGCGGCTCTGCGGCCGGAAGC 41 53 1 GCGGCTCTGC 0.318227 -104 ATCGCGTCAGGAGGCGATGGTCCCTAACCC 42 27 0 GAGGCGATGG 0.317526 -69 CTACGGTCCAGCGCTGCTGGCCCGGCCCGA 43 82 0 GCGCTGCTGG 0.53858 -120 TGCGACACCGACTTGCCGAAG 44 2 1 GCGACACCGA 0.817407 -299 CACCGACTTGCCGAAGCCGGGGCCTTTCCC 44 16 1 CCGAAGCCGG 0.519043 -285 GATCGTTTTGGCGCTACCGCACAACAATGG 44 149 0 GCGCTACCGC 0.756343 -152 GGCCGGGAGAGCGGCGTCGTGACCGTGCTG 44 210 1 GCGGCGTCGT 0.51307 -91 AGTTCTGTTGCCGCCATTGACCGAGCCGAC 46 23 1 CCGCCATTGA 0.366669 -278 GCCATTGACCGAGCCGACGAACTCCGCGGC 46 35 1 GAGCCGACGA 0.925445 -266 CCGACGAACTCCGCGGCCGCACGGTTGTGT 46 48 1 CCGCGGCCGC 0.673507 -253 TACGACGAGGTCGACATCGAACACAACCGT 46 68 0 TCGACATCGA 0.161086 -233 CTAACCTAGCGCGGCGACGACCCGGGCGGT 46 194 1 GCGGCGACGA 0.803979 -107 CTGCCGAGCCGCCACACCGCCCGGGTCGTC 46 209 0 GCCACACCGC 0.738932 -92 CGGGCGTGTCGCCACGCCGTGGGGCGTGCG 46 249 0 GCCACGCCGT 0.640034 -52 GCCTGCTACCGGTCGATTTCTT 47 3 1 CTGCTACCGG 0.276004 -298 GTTCCGGTCGCCGACGACGAAGAAATCGAC 47 22 0 CCGACGACGA 0.907823 -279 CGAGACGCCAGCGAAGCCGACGTCGTCGAC 47 64 0 GCGAAGCCGA 0.720639 -237 TACCTCAGCGGCGGCGCCGGCGACCGAGAC 47 88 0 GCGGCGCCGG 0.500115 -213 GCTGTCGATTTCGACGACGAAGCCGGGTTG 47 127 0 TCGACGACGA 0.626952 -174 GAGCAAGGGCGTGCTGTCGATTTCGACGAC 47 139 0 GTGCTGTCGA 0.236264 -162 GACGAAATACCCGAAGCCGATGCGGTGGAG 47 166 0 CCGAAGCCGA 0.702507 -135 CTGTGGACCGCCGCCTACGACCGCCGCCAT 47 196 1 CCGCCTACGA 0.802267 -105 TCACTGCAACGAGCTGCCGCTGCAATTACA 50 82 1 GAGCTGCCGC 0.716838 -43 GCGCGGCAGGTCGGCGATGCGTTGGAGATT 51 31 1 TCGGCGATGC 0.246499 -270 TTGGAGATTGGAGACGTCGGCCGCGTCACG 51 52 1 GAGACGTCGG 0.462842 -249 GTGCCGCGTATCGGCGACGGCTTTGTCGCG 51 120 0 TCGGCGACGG 0.500597 -181 GCGATATCTGGCGGAGCCGGTGGTGTCGCA 51 187 1 GCGGAGCCGG 0.501944 -114 GGGTGGGTCTGCCCCGACGTCCCTGCTGCG 51 213 0 GCCCCGACGT 0.738015 -88 GGGCAGACCCACCCCACCGAAAGAACCACC 51 229 1 ACCCCACCGA 0.284447 -72 ATCGTGCCAACAGGCACCGACAAAAACCGC 52 18 0 CAGGCACCGA 0.831967 -26 GTGGAGCAACGGGCCGCCGAGCTGGGCGGA 53 12 0 GGGCCGCCGA 0.771344 -180 ACGGGGGTCAACGCCGACGGAGATGGCG 54 9 0 ACGCCGACGG 0.60541 -33 GGTGAACTTCGCGCCACCGAATGATTGATG 55 102 0 GCGCCACCGA 0.951252 -199 AAGTGCGAATTCGCCGCCGGCTACCCGCAC 55 234 1 TCGCCGCCGG 0.535212 -67 ACCGCGTCGACGGTACCCATCGC 56 4 1 GCGTCGACGG 0.358495 -78 CGGTTTGGCCCCGGCGATGGGTACCGTCGA 56 17 0 CCGGCGATGG 0.703228 -65 ********** Masking position 9 Map Score: 140.05 Number of sites scoring better than the average of aligned sites = 77242 Number in coding regions = 73103 Number in noncoding regions = 4139 Number of orfs with sites within 600 bp upstream = 1297 Fraction of orfs with sites within 600 bp upstream = 0.20832 Motif number 3 CGCAGAGAAGCGGTGGGGGCGCGCCCCCAC 1 34 1 CGGTGGGGGC 0.766702 -55 TCTCCCCCGCAAGCGGGTGGGGGTACC 1 72 0 CGCAAGCGGG 0.716291 -17 GATACTTTGACGGTGGTCGGCGCGGGTCAA 2 37 0 CGGTGGTCGG 0.842176 -87 GCTCGGCAGCGCGGGGCCGGAGCAGACGGT 2 83 1 GCGGGGCCGG 0.867851 -41 AGTACGGTGGGCGAAGGGGGACTTGAACCC 3 22 1 GCGAAGGGGG 0.478968 -279 CAGCGCGTCTGCCATTCCGCCACTCGCCCG 3 83 1 GCCATTCCGC 0.720232 -218 CCCCTGGCAGCGGATGGGGCCTGCGGCTAC 3 140 0 CGGATGGGGC 0.276826 -161 GGCTCAGTGGGCGTGGCCGGCCCTTTCCGC 3 178 1 GCGTGGCCGG 0.974566 -123 GCGTGGCCGGCCCTTTCCGCTCGCTCACAC 3 188 1 CCCTTTCCGC 0.713329 -113 ACCGCCTCGATGGAGTCCGCGTGCGGAGCC 4 19 0 TGGAGTCCGC 0.242786 -282 ACGTCGCCCACCGGGGCCGCCCGGGCCCCC 4 169 1 CCGGGGCCGC 0.870554 -132 CCGGCCGGCAGGCTGTCCGGACGAACCGGG 4 197 0 GGCTGTCCGG 0.941368 -104 AGTCCACCCTCGGTTGGGGCAGCCGGCCGG 4 219 0 CGGTTGGGGC 0.309996 -82 GTGCGGTGGTGCCTGGTCGGCATTTTCGCA 6 96 1 GCCTGGTCGG 0.854846 -123 CACGGATCGACCGTGGCCGCACACGACCAC 6 180 1 CCGTGGCCGC 0.97514 -39 GCCAGTGCCTGGCAGGCCGA 7 1 0 GGCAGGCCGA 0.315996 -103 GCCAGGCACTGGCTGTTCGCTGTCGGTGCG 7 18 1 GGCTGTTCGC 0.791281 -86 ACCGACCGCGGCGTGGTCGCGCCAATCACA 11 72 1 GCGTGGTCGC 0.900143 -229 CAATCACAGCGCGTGCCCGCGACGCACTGC 11 94 1 GCGTGCCCGC 0.800849 -207 CAAGTCAGAGCGCTGGCCGCGGCGCCTGGC 11 138 0 CGCTGGCCGC 0.96685 -163 GCGGGAGAGCCGCTAGCCGCCGGTGACCGG 11 252 1 CGCTAGCCGC 0.901667 -49 CGCTAGCCGCCGGTGACCGGCGATTGGAGA 11 262 1 CGGTGACCGG 0.321893 -39 ACTCACCTCACCGAAGCCGCCTGACGCGGT 12 35 0 CCGAAGCCGC 0.884632 -97 CGTTAGCCAGGCGTTGCCGCGTCGTTGGGA 14 61 1 GCGTTGCCGC 0.870087 -240 CGTGACGCGCCGGTGGCGGGCACGTGAAAC 14 103 0 CGGTGGCGGG 0.920685 -198 CGCCGGTGAAGGCAGTCCGGACCCCTTTGG 14 189 0 GGCAGTCCGG 0.931851 -112 GCGAAGTATGCGCAAGTCGGTAGACATGGC 14 229 1 CGCAAGTCGG 0.537138 -72 TGCACGCGCACCCTGTCGGGCTAGCTGCCC 15 77 0 CCCTGTCGGG 0.854136 -224 TGACGCGCACGGCAATTGGCCGGCTCGGTC 15 129 1 GGCAATTGGC 0.292418 -172 CCCTTCAGTGCGGTATCCGCAGACCGAGAC 15 156 0 CGGTATCCGC 0.864175 -145 GGCGAAAAGGCCGTGTGCGGTGCCGGGTCG 15 196 1 CCGTGTGCGG 0.798574 -105 CCGCCAACGAGCGTGTTCGCCGGTGGTGGG 15 257 1 GCGTGTTCGC 0.826262 -44 GCGTGTTCGCCGGTGGTGGGGCGGGCGGGT 15 267 1 CGGTGGTGGG 0.684952 -34 CACACACCTCCCCAACCCGCCCGCCCCACC 15 281 0 CCCAACCCGC 0.359429 -20 GGGTTTCGGTGCCGGTCCGGGGCATGGCCA 16 24 1 GCCGGTCCGG 0.729904 -128 TCCGGGGCATGGCCATCCGCTGAGCTGGCG 16 39 1 GGCCATCCGC 0.478904 -113 CAATCCAATTGGCCGGCCGGCGGGTGGTAT 17 22 0 GGCCGGCCGG 0.804568 -87 CTGTTGCTGGGCGCGGCCGCGATCTTCGGA 18 122 0 GCGCGGCCGC 0.869316 -179 CCAACCACCACGCTTGCGGCGGCGGGCGCG 18 153 1 CGCTTGCGGC 0.618977 -148 CATACGCTCCGGGTTGGGGGGCCAGGCCCA 18 258 0 GGGTTGGGGG 0.305008 -43 CCAACCCGGAGCGTATGCGCCACCGTGACA 18 271 1 GCGTATGCGC 0.650943 -30 CACCGTGACAGCATGTCCGG 18 291 1 GCATGTCCGG 0.248569 -10 CGGCGTACGGCGGTAGTCGGCAGTCGCGCC 20 12 1 CGGTAGTCGG 0.626531 -189 ATGCAAGCCTGCCACGCCGCCCTGACTGAG 20 64 0 GCCACGCCGC 0.556996 -137 AATCCTGCCCGCGAGTCGGCCGACTTGCTT 21 85 1 GCGAGTCGGC 0.869485 -216 CGCCGCGATCGGCAGTCGGGTGCAAGCAAG 21 108 0 GGCAGTCGGG 0.847859 -193 ACCACACGACGGCTGGCCGGCATGTCGCGT 21 170 0 GGCTGGCCGG 0.966091 -131 TGAGGAGGCGGGCAATCGGCTTAGGCGCGC 21 232 0 GGCAATCGGC 0.688248 -69 GATACGCGCCGCGAGGCGGCGGGCTGAGGA 21 256 0 GCGAGGCGGC 0.939373 -45 CACTCGCCACCGGTGGTCGCCGAGCCACCG 25 162 0 CGGTGGTCGC 0.87059 -54 AATGGCGCACGCCAGTACGCCCAGGTGTGG 26 78 0 GCCAGTACGC 0.183119 -223 TCGGCCCCCGCCGAGGCCGCTGACCGTCGC 26 143 0 CCGAGGCCGC 0.966207 -158 TCGGCGGGGGCCGAGGCCGCGAGAGCGCAG 26 159 1 CCGAGGCCGC 0.966207 -142 TACAGGCTCGGCGATGCGGGCCTGCGCTCT 26 180 0 GCGATGCGGG 0.648005 -121 GAGACGAGCCCCGAATCCGGAAGCGGACCA 27 32 1 CCGAATCCGG 0.702857 -265 CCACGGGCACCGCTGGCCGGTACCCGTAGA 27 86 1 CGCTGGCCGG 0.958566 -211 ACCCAAAATTGGGTGGTGGCGCCGAAGGAC 27 197 1 GGGTGGTGGC 0.771459 -100 CAGGCTATGCCGCGGTCCGCCGACTCGTCG 27 251 1 CGCGGTCCGC 0.778074 -46 CCCCAGTGGGGTGGGATACCA 28 2 1 CCCAGTGGGG 0.525711 -48 CGAGAAACACCGGAGTCCGGCGCTCG 29 7 0 CGGAGTCCGG 0.93182 -50 GGGGCGGCCCGCGTGGCGGGCCGAGGAGGA 32 34 1 GCGTGGCGGG 0.940345 -141 GAGGAGGAGGCGGAGGCGGCACAGCACCCG 32 56 1 CGGAGGCGGC 0.925749 -119 TGCTCTGACGGGCTGTCCGTCAAGGTGTTT 32 98 0 GGCTGTCCGT 0.234046 -77 CACTGCCAAGGGGAATCCGCCCCTGGCTAC 32 128 0 GGGAATCCGC 0.869168 -47 GCCGCTTCACCCGTTTCGGGGTAACGCACC 34 66 1 CCGTTTCGGG 0.497588 -176 ACTGGCACAAGGCAAGCGGGGCCACTAACG 34 114 0 GGCAAGCGGG 0.756645 -128 GTACCCGTGGGGGTGTCCGCTCGTCGGGCT 38 163 0 GGGTGTCCGC 0.961427 -85 CGTCCCAGGGCGCTATCCGCAGCGTGAGTA 38 190 0 CGCTATCCGC 0.837851 -58 CGAATCCTTGGGGGATCCGCGCAGTGGCAA 39 62 0 GGGGATCCGC 0.623659 -202 CGGCGAATGACCGAGTCCGCCTGTGGAACT 39 116 1 CCGAGTCCGC 0.913137 -148 CGTCCGGCACCCGTGTGCGGGCGAGCGCAG 39 231 0 CCGTGTGCGG 0.798574 -33 CCGAGCCCGCCAGCTATCGG 41 1 1 CCGAGCCCGC 0.670076 -156 GTTCGGACGGGGCTTTCCGCGCGGGTGGGC 43 37 0 GGCTTTCCGC 0.734557 -165 CACCGACTTGCCGAAGCCGGGGCCTTTCCC 44 16 1 CCGAAGCCGG 0.870449 -285 AGGCGTCCCGGCCAGGTCGCCGGACCTAAG 44 90 0 GCCAGGTCGC 0.854712 -211 CGCTCTCCCGGCCAAGGCGGGTGCTGACAT 44 193 0 GCCAAGGCGG 0.648824 -108 CCTCCTCCGCGCCAGCCCGCGCCCCGAGCC 44 256 0 GCCAGCCCGC 0.702166 -45 GCACTGTAGGGCCTGTGGGCAGAATTGGTA 45 47 1 GCCTGTGGGC 0.671856 -23 CCGACGAACTCCGCGGCCGCACGGTTGTGT 46 48 1 CCGCGGCCGC 0.846497 -253 ATGAACAACTGCCGAGCCGCCACACCGCCC 46 217 0 GCCGAGCCGC 0.67107 -84 CCCTCACATCGCGTTTTCGGTTTTCTTGCC 47 235 1 GCGTTTTCGG 0.358624 -66 GCACGCCTCGGGCACGCCGGGGTTGGCTAC 48 24 1 GGCACGCCGG 0.490624 -52 TGTAACGGCGCCCTGTCGGGTAGCCAACCC 48 43 0 CCCTGTCGGG 0.854136 -33 GCCCCGCTCAGGGTGGTCGGTGTGG 49 6 0 GGGTGGTCGG 0.867928 -33 CGCAGGCCGCGTCCAGCAGG 50 1 1 CGCAGGCCGC 0.961313 -124 GATGAGGCGCGGCAGGTCGGCGATGCGTTG 51 25 1 GGCAGGTCGG 0.819698 -276 CGGCTTTGTCGCGAATCGGCGAAAGCTAGG 51 103 0 GCGAATCGGC 0.623192 -198 AGATAGTGCCGCGTATCGGCGACGGCTTTG 51 125 0 GCGTATCGGC 0.765392 -176 CACTATCTTCGCCAATTCGCGGATATCTCC 51 147 1 GCCAATTCGC 0.415877 -154 GCGGTAGGCGGTTTTTGTCGG 52 2 1 CGGTAGGCGG 0.667935 -42 TTTTGTCGGTGCCTGTTGGCACGATGGCTA 52 23 1 GCCTGTTGGC 0.628263 -21 ATGTTCTTAACCGTTTGGGCCTTCTGCTTC 53 114 1 CCGTTTGGGC 0.219046 -78 CCAGACGCAGCCCAATTCGGGCTCCTCCCC 55 71 1 CCCAATTCGG 0.351691 -230 GTTCGCGTGAGCGTGTCCGGGACTCTGGTG 55 128 0 GCGTGTCCGG 0.953553 -173 ATTGGTAAGTGCGAATTCGCCGCCGGCTAC 55 228 1 GCGAATTCGC 0.412183 -73 TACGGGGTGCGGGTAGCCGGCGGCGAATTC 55 240 0 GGGTAGCCGG 0.916879 -61 ACGTCTGCAGCGCAATGCGGGCTTGGCTTA 56 52 1 CGCAATGCGG 0.439493 -30 ********** Masking position 9 Map Score: 125.163 Number of sites scoring better than the average of aligned sites = 47301 Number in coding regions = 44323 Number in noncoding regions = 2978 Number of orfs with sites within 600 bp upstream = 1287 Fraction of orfs with sites within 600 bp upstream = 0.206714 Motif number 4 CCCGCGCTGGCGACGATGCAGAGC 1 2 1 CGCGGGCGAC 0.654131 -87 CGGCGCGGGTCAACCCCGGCAGCTTCGAGCCCA 2 17 0 CACCGGCAGC 0.877395 -107 GACCATACCACTGTAGTAGCCGCAGGCCCCATC 3 125 1 CGTAAGCCGC 0.647272 -176 GCGCCCCTGGCAGCGGATGGGGCCTGCGGCTAC 3 140 0 CGCGTGGGGC 0.626526 -161 CATCCGCTGCCAGGGGCGCCGGCGGGCTCAGTG 3 154 1 CGGGGCCGGC 0.78849 -147 TGGGCGTGGCCGGCCCTTTCCGCTCGCTCACAC 3 185 1 CGCCTTCCGC 0.639674 -116 TCCATCGAGGCGGTCAAGGCCGCGCTCGACGGC 4 35 1 CGTCGGCCGC 0.982002 -266 CGACGGCGCGCCGCCGATGCCCCCGCCGCGCGA 4 61 1 CGCCTGCCCC 0.73024 -240 GATGCCCCCGCCGCGCGACCCGCTCGAGGAGGT 4 76 1 CGCGACCCGC 0.698985 -225 GAGGTCACGGCCGCGTTGGCCGCCCCGCCCGGT 4 104 1 CGCGGGCCGC 0.990525 -197 CAGACGTCGCCCACCGGGGCCGCCCGGGCCCCC 4 166 1 CACCGGCCGC 0.953153 -135 AGTCCACCCTCGGTTGGGGCAGCCGGCCGGCAG 4 216 0 CGTTGGCAGC 0.43562 -85 CGGTGAGGTACAGCGAACGCCGTATCCATTTCC 4 273 0 CGCGCGCCGT 0.644092 -28 GGAGGGTCGCCTGCGTCGGCAACTCGCCCAGGC 6 144 0 CGCGGGCAAC 0.424616 -75 TGCCACGGATCGACCGTGGCCGCACACGACCAC 6 177 1 CACCGGCCGC 0.95319 -42 TGGCTGTTCGCTGTCGGTGCGGTTACGTAGGCT 7 27 1 CGTCTGCGGT 0.770973 -77 TCTGGCTGACCCAGGTTGGCAGTGTTGACACAG 11 34 0 CAGGGGCAGT 0.356129 -267 CGGGCACGCGCTGTGATTGGCGCGACCACGCCG 11 80 0 CGTGTGGCGC 0.490578 -221 CGACGCACTGCAGGCCGTGCTGCGCGCCAGGCG 11 113 1 CGGCTGCTGC 0.724588 -188 TGCTGCGCGCCAGGCGCCGCGGCCAGCGCTCTG 11 130 1 CGGCCGCGGC 0.898333 -171 GTCAGGCCCGCGCCGAGGGCCGCGACTTTCTCG 11 202 1 CCCGGGCCGC 0.683477 -99 CGCGCGCGGCGCGGGAGAGCCGCTAGCCGCCGG 11 242 1 GGGGAGCCGC 0.533517 -59 GGCCTCCGCTCAACATCGGCGGCGGCATGACCA 12 81 0 CACAGGCGGC 0.629106 -51 AATCCATCGCCAGTGCATCCAGCGGGCCATAGG 13 54 1 CGTGTCCAGC 0.39983 -90 CGGATCGAATCAGTGGATGCGGTGGGGTCCGTG 14 23 0 CGTGTGCGGT 0.770973 -278 AGCCGTTAGCCAGGCGTTGCCGCGTCGTTGGGA 14 58 1 CGGCTGCCGC 0.974901 -243 GTGAGGTCGCCGGTGAAGGCAGTCCGGACCCCT 14 193 0 CGTGGGCAGT 0.696106 -108 GGACAGTCAGCTGTCGCAGCCGTGACCAGCGGA 15 38 1 CGTCAGCCGT 0.703184 -263 CGGTCTCGGTCTGCGGATACCGCACTGAAGGGC 15 154 1 CGCGTACCGC 0.412674 -147 CCAGCCTTAAGGGTCCGGGCGGCAGGATTTTTC 16 89 0 GGTCGGCGGC 0.743173 -63 TTGGCGCCAGCCGTGATTGCCGCGTGAGCCCCC 17 49 1 CGTGTGCCGC 0.969032 -60 GGTCTGTTGCTGGGCGCGGCCGCGATCTTCGGA 18 122 0 TGGCGGCCGC 0.435279 -179 AGACCAACCACCACGCTTGCGGCGGCGGGCGCG 18 150 1 CACGTGCGGC 0.91317 -151 TCCTCGACGGCTGTGGGTGCGGCTTGAGAGGCT 18 204 1 CGTGTGCGGC 0.965746 -97 CCGGACATGCTGTCACGGTGGCGCATACGCTC 18 279 0 CGTCGGTGGC 0.645943 -22 AGCCCGTGCGATGGATGCAGCAATGCTCAAG 19 31 0 CATGTGCAGC 0.679651 -21 CGCGTTGTCTCAGTCAGGGCGGCGTGGCAGGCT 20 56 1 CGTCGGCGGC 0.980066 -145 CACCATTAGCCGGGCGCTGCGGGGAA 23 4 0 CGGCTGCGGG 0.550068 -70 CGTCGACCCTCAGTATCAGCGGCCCCTCCTGAA 25 61 1 CGTAAGCGGC 0.623025 -155 AATACCGACCCCGGGTCGGTGGCTCGGCGACCA 25 146 1 CGGGGGTGGC 0.695517 -70 GGAAGTTGAACCGCCGTTGCGCCGCTTGGTACT 26 32 0 CGCCTGCGCC 0.709595 -269 TGCGCCATTGCAGGCCATGCTGCCTGATCTGCA 26 99 1 CGGCTGCTGC 0.724588 -202 GCCTCGGCCCCCGCCGAGGCCGCTGACCGTCGC 26 143 0 CGCCGGCCGC 0.990009 -158 GCCTCGGCGGGGGCCGAGGCCGCGAGAGCGCAG 26 156 1 GGCCGGCCGC 0.86071 -145 CCGCGACAAACGGCGAGTGCCGCCGAGCACGAT 26 214 1 CGCGTGCCGC 0.983746 -87 GGAGTGGCGTCGATCAGAGCCGCTGTCTTCGCC 26 259 0 CATCAGCCGC 0.792814 -42 CCACGGGGCTCTGCGAAAGCAGCTAGACCACGG 27 59 1 CGCGAGCAGC 0.930972 -238 TGAGCCTGGCCAGGCTATGCCGCGGTCCGCCGA 27 241 1 CGGCTGCCGC 0.974565 -56 AACGATGACACAGCCCCGGCCGTCCCGCGCGAG 31 17 1 CGCCGGCCGT 0.926503 -84 CCCGGCCGTCCCGCGCGAGCGCCGGGACAGCGC 31 31 1 CGCGAGCGCC 0.607658 -70 CCTCGGCCCGCCACGCGGGCCGCCCCGTCACCG 32 27 0 CACGGGCCGC 0.953175 -148 GCCGAGGAGGAGGCGGAGGCGGCACAGCACCCG 32 53 1 AGCGGGCGGC 0.517503 -122 TGGCCCCGTTCGACGGGTGCTGTGCCGCCTCCG 32 66 0 CACGTGCTGT 0.085665 -109 GACGGACAGCCCGTCAGAGCAGTAGCCAGGGGC 32 107 1 CGTCAGCAGT 0.454311 -68 TACCCCGAAACGGGTGAAGCGGCCGCTGGATCG 34 56 0 CGGTAGCGGC 0.473737 -186 CGTGACCGGACGGTGACTGCCGCGCTCAATCTT 37 43 0 CGTGTGCCGC 0.969044 -197 ATCTGGCCAGCTATGGACGCGGCCGGCATCTGT 37 100 1 CATGCGCGGC 0.576465 -140 ACTTCACCGTCTGCCATTCCAGCCGGAAGTCAC 37 167 0 CGCCTCCAGC 0.563044 -73 ATGCATGGCACCGCCGAATCAGCCTGAAGACAC 38 89 1 CGCCATCAGC 0.283382 -159 GACCGGGATTCGGTGCCAGCATCGGGCTGAGTG 38 119 0 CGTGAGCATC 0.0729077 -129 TGTACCGTAGCGATATTGGCAGTATTTCTGGTC 38 225 1 CATAGGCAGT 0.039252 -23 TCGTGAGTTGGCGGCTCTGCGGCCGGAAGCTTG 41 53 1 GGGCTGCGGC 0.656284 -104 ACGGTTCGGACGGGGCTTTCCGCGCGGGTGGGC 43 37 0 CGGGTTCCGC 0.534697 -165 CAACGTCGGGCCGGGCCAGCAGCGCTGGACCGT 43 77 1 CGGGAGCAGC 0.897204 -125 CGTAGGCGTCCCGGCCAGGTCGCCGGACCTAAG 44 90 0 CGGCGGTCGC 0.71628 -211 AATGGCTATCCTGTGCTAGCCGCGGGCTACACG 44 121 0 CGTGAGCCGC 0.952019 -180 CCCGCCTTGGCCGGGAGAGCGGCGTCGTGACCG 44 202 1 CGGGAGCGGC 0.957123 -99 AGCGCGGCGACGACCCGGGCGGTGTGGCGGCTC 46 201 1 CACCGGCGGT 0.686502 -100 AGATGACAGACCGGGCGTGTCGCCACGCCGTGG 46 257 0 CGGGTGTCGC 0.592519 -44 GACGTCCATCTTGGCAGCGGTAGATGAC 46 283 0 CATCGGCAGC 0.787227 -18 TGGACACCGCCTACCTCAGCGGCGGCGCCGGCG 47 96 0 CACCAGCGGC 0.869553 -205 TGAGGGGTGGCTACCATGGCGGCGGTCGTAGGC 47 208 0 CACCGGCGGC 0.948294 -93 TCTTCCGGGTCTGTAATTGCAGCGGCAGCTCGT 50 90 0 CGTATGCAGC 0.504316 -35 TTCGCGATATCTGGCGGAGCCGGTGGTGTCGCA 51 184 1 CGGCAGCCGG 0.459589 -117 TTCCGCCCAGCTCGGCGGCCCGTTGCTCC 53 7 1 CAGCGGCGGC 0.922248 -185 GCGATGGGTACCGTCGACGCGGT 56 1 0 CGTCCGCGGT 0.457307 -81 CAAACCGTGACGACGTCTGCAGCGCAATGCGGG 56 40 1 CACGTGCAGC 0.80406 -42 * *** ****** Masking position 10 Map Score: 105.81 Number of sites scoring better than the average of aligned sites = 38457 Number in coding regions = 36662 Number in noncoding regions = 1795 Number of orfs with sites within 600 bp upstream = 897 Fraction of orfs with sites within 600 bp upstream = 0.144073 Motif number 5 CCGTCTGCTCCGGCCCCGCGCTGCCGAGCA 2 82 0 CGGCCCCGCG 0.734369 -42 CCGCGCTCGACGGCGCGCCGCCGATGCCCC 4 54 1 CGGCGCGCCG 0.485758 -247 CGACACGCCGCGGATCGTCGCACCGGGTTA 6 58 1 CGGATCGTCG 0.96168 -161 CCTCCTGCCACGGATCGACCGTGGCCGCAC 6 172 1 CGGATCGACC 0.32577 -47 GCGGTTACGTAGGCTCGGCGAAGAAGAACA 7 45 1 AGGCTCGGCG 0.968824 -59 CTGGGTTCGGCGGCTGGTCGTGTTCTTCTT 7 65 0 CGGCTGGTCG 0.695723 -39 GCCGGACCGACGAAGGACCGAC 11 3 1 CGGACCGACG 0.936046 -298 GGACCGACGAAGGACCGACGCTGTGTCAAC 11 14 1 AGGACCGACG 0.748433 -287 CTAGCCGCCGGTGACCGGCGATTGGAGATT 11 264 1 GTGACCGGCG 0.209374 -37 AACGCACCGGCGGATAGTCGTCT 12 4 0 CGGATAGTCG 0.644424 -128 GGCCCTCCTCGGATCGGCGTATTTGCACC 13 125 0 CGGATCGGCG 0.984972 -19 AAGCTAGATCCGACACGGCGTCTGCATTCA 14 148 1 CGACACGGCG 0.630856 -153 CAGCCGCCGCTCGACGTCGCGAAGTC 15 7 1 CCGCTCGACG 0.775698 -294 GGCCATGCCCCGGACCGGCACCGAAACCCT 16 23 0 CGGACCGGCA 0.585412 -129 ACCGATGAACCGGATCGTCGCGCCCGCCGC 18 171 0 CGGATCGTCG 0.96168 -130 GCGGCTTGAGAGGCTAGAGGCAACTTAGCA 18 222 1 AGGCTAGAGG 0.0416644 -79 GGCAGGATTACCGCCCGACGGTTCCTGGCG 21 64 0 CCGCCCGACG 0.717753 -237 CTGCCGATCGCGGCGCGCCGGCTCATGCTC 21 123 1 CGGCGCGCCG 0.485758 -178 CGCGACATGCCGGCCAGCCGTCGTGTGGTT 21 171 1 CGGCCAGCCG 0.421026 -130 AGGCGCGCCGCGGGGCGGCGGGCATCATCG 21 210 0 CGGGGCGGCG 0.803015 -91 CCTCGCGGCGCGTATCGTCGGCGCGCTTAA 21 270 1 CGTATCGTCG 0.441687 -31 GCTGATACTGAGGGTCGACGGCGCGCTTTG 25 51 0 AGGGTCGACG 0.589239 -165 CCCGGGTCGGTGGCTCGGCGACCACCGGTG 25 155 1 TGGCTCGGCG 0.767819 -61 TACCAAGCGGCGCAACGGCGGTTCAACTTC 26 34 1 CGCAACGGCG 0.446734 -267 GCCGAGGCCGCTGACCGTCGCCCAGCACCC 26 134 0 CTGACCGTCG 0.629745 -167 CGGTATCTACAGGCTCGGCGATGCGGGCCT 26 187 0 AGGCTCGGCG 0.968824 -114 TTTAGTTATCGTGCTCGGCGGCACTCGCCG 26 224 0 GTGCTCGGCG 0.453136 -77 CGATAACTAAAGGCTCGGCGAAGACAGCGG 26 243 1 AGGCTCGGCG 0.968824 -58 GACAGCGGCTCTGATCGACGCCACTCCACG 26 265 1 CTGATCGACG 0.646748 -36 TAGCCTGGCCAGGCTCATCGCCACGCGGCA 27 228 0 AGGCTCATCG 0.257077 -69 GACGAGTCGGCGGACCGCGGCATAGCCTGG 27 250 0 CGGACCGCGG 0.364907 -47 CGCGGTCCGCCGACTCGTCGCCGCGCGGCG 27 261 1 CGACTCGTCG 0.700393 -36 CCGCCCCGACGCGTTGGAGAC 30 45 0 CGCCCCGACG 0.597003 -11 CTGCTTCCCGCTGCTCAGCGCGCGAAGCAG 36 48 1 CTGCTCAGCG 0.292489 -51 GTGGGGGTGTCCGCTCGTCGGGCTCGTCTA 38 157 0 CCGCTCGTCG 0.813621 -91 CGTGAGTTGGCGGCTCTGCGGCCGGAAGCT 41 54 1 CGGCTCTGCG 0.713624 -103 CATAGCAGATATGATCGGCGCGCGTCACAA 41 83 0 ATGATCGGCG 0.554083 -74 GCTGCTGGCCCGGCCCGACGTTGCCCAATC 43 70 0 CGGCCCGACG 0.96402 -132 GCCCCGGCTTCGGCAAGTCGGTGTCGCA 44 9 0 CGGCAAGTCG 0.507842 -292 CAAATCTCTTAGGTCCGGCGACCTGGCCGG 44 83 1 AGGTCCGGCG 0.543509 -218 ACGTCTGGTTAGGCTCGGGGCGCGGGCTGG 44 245 1 AGGCTCGGGG 0.668823 -56 CCACACCGCCCGGGTCGTCGCCGCGCTAGG 46 198 0 CGGGTCGTCG 0.899109 -103 GGCGGTGTGGCGGCTCGGCAGTTGTTCATG 46 218 1 CGGCTCGGCA 0.815135 -83 CGTCGGCGACCGGAACGACGAAGGCTTGGT 47 36 1 CGGAACGACG 0.832803 -265 GGATGAGGCGCGGCAGGTCGGCGATGCGTT 51 24 1 CGGCAGGTCG 0.41079 -277 GGCGAAAGCTAGGAACGTCGACCGCGTCGT 51 86 0 AGGAACGTCG 0.561138 -215 GGCTTTGTCGCGAATCGGCGAAAGCTAGGA 51 102 0 CGAATCGGCG 0.749526 -199 GATAGTGCCGCGTATCGGCGACGGCTTTGT 51 124 0 CGTATCGGCG 0.676408 -177 GTGTCGCAGCAGGGACGTCGGGGCAGACCC 51 209 1 AGGGACGTCG 0.311612 -92 ACCACACGTTCGGCTAGGCGAGCAGGTGGT 51 259 0 CGGCTAGGCG 0.843217 -42 TTCCGCCCAGCTCGGCGGCCCGTTGCT 53 8 1 CAGCTCGGCG 0.744932 -184 GCTTCCGGTGCGGTCCGGCGGACACTTATA 53 139 1 CGGTCCGGCG 0.854125 -53 ********** Masking position 9 Map Score: 60.7184 Number of sites scoring better than the average of aligned sites = 13666 Number in coding regions = 12728 Number in noncoding regions = 938 Number of orfs with sites within 600 bp upstream = 647 Fraction of orfs with sites within 600 bp upstream = 0.103919 Motif number 6 GTTGACCCGCGCCGACCACCGTCAAAGTATC 2 36 1 GCCACCACCG 0.508093 -88 CGAGTCGTTTGCCTTGCGCCGACGATGCACC 3 255 1 GCCTGCGCCG 0.982319 -46 GCGGCGCGCCGTCGAGCGCGGCCTTGACCGC 4 44 0 GTCAGCGCGG 0.724719 -257 GGCAGACGTCGCCCACCGGGGCCGCCCGGGC 4 164 1 GCCACCGGGG 0.633746 -137 GAACGGCGAGGCCTATCGCGAACAGA 6 6 0 GCCATCGCGA 0.790113 -213 GATAGGCCTCGCCGTTCGCGACACTGACATT 6 20 1 GCCTTCGCGA 0.790113 -199 ACGTAACCGCACCGACAGCGAACAGCCAGTG 7 24 0 ACCACAGCGA 0.214719 -80 GAAGAACACGACCAGCCGCCGAACCCAGGCG 7 67 1 ACCGCCGCCG 0.862296 -37 CACAGCGTCGGTCCTTCGTCGGTCCGGC 11 8 0 GTCTTCGTCG 0.167714 -293 CCAGAGCTCTACCGACCGCGGCGTGGTCGCG 11 62 1 ACCACCGCGG 0.908814 -239 CGTGCTGCGCGCCAGGCGCCGCGGCCAGCGC 11 128 1 GCCGGCGCCG 0.952792 -173 TCAGGCCCGCGCCGAGGGCCGCGACTTTCTC 11 203 1 GCCAGGGCCG 0.616141 -98 GCTCTCCCGCGCCGCGCGCGATTGTAGCGAG 11 231 0 GCCCGCGCGA 0.627529 -70 GCGCGGGAGAGCCGCTAGCCGCCGGTGACCG 11 250 1 GCCCTAGCCG 0.620936 -51 CAACTCAATCTCCAATCGCCGGTCACCGGCG 11 269 0 TCCATCGCCG 0.433568 -32 AGACGACTATCCGCCGGTGCGTTCAC 12 6 1 ACTTCCGCCG 0.212827 -126 CACCGAAGCCGCCTGACGCGGTGAACGCACC 12 26 0 GCCGACGCGG 0.593871 -106 AACCTAGCACGCCAACCGCAGAAATCGGACC 13 18 1 GCCACCGCAG 0.614358 -126 GACCAAAAGAATCCATCGCCAGTGCATCCAG 13 45 1 ATCATCGCCA 0.122553 -99 GGCCCTCCTCGGATCGGCGTAT 13 132 0 GCCTCCTCGG 0.51293 -12 CGATCCGTGAGCCGTTAGCCAGGCGTTGCCG 14 49 1 GCCTTAGCCA 0.499709 -252 GACCGAGCCGGCCAATTGCCGTGCGCGTCAA 15 128 0 GCCATTGCCG 0.641985 -173 TGGCGAAAAGGCCGTGTGCGGTGCCGGGTCG 15 195 1 GCCTGTGCGG 0.612727 -106 ACCTAACAATGTCGTCCGCCAACGAGCGTGT 15 242 1 GTCTCCGCCA 0.491132 -59 CCGGGGCATGGCCATCCGCTGAGCTGGCGAT 16 40 1 GCCTCCGCTG 0.737476 -112 CGTCGCGGATACCACCCGCCGGCCGGCCAAT 17 14 1 ACCCCCGCCG 0.834859 -95 GGATCGTCGCGCCCGCCGCCGCAAGCGTGGT 18 159 0 GCCGCCGCCG 0.959876 -142 CTCAAGCCGCACCCACAGCCGTCGAGGAGCC 18 201 0 ACCACAGCCG 0.725611 -100 GCCGACTACCGCCGTACGCCGC 20 2 0 GCCTACGCCG 0.874401 -199 CGGCAGTCGCGCCGCACGCGGCAGTTGCGCG 20 29 1 GCCCACGCGG 0.541394 -172 GCACCCGACTGCCGATCGCGGCGCGCCGGCT 21 115 1 GCCATCGCGG 0.95465 -186 CGACATGCCGGCCAGCCGTCGTGTGGTTCAC 21 173 1 GCCGCCGTCG 0.617684 -128 GCCCCCTAGCACCATTAGCCGGGCGCTGCGG 23 15 0 ACCTTAGCCG 0.593828 -59 AGCATGTAGTACCCTGCGCCG 25 1 0 ACCTGCGCCG 0.935662 -215 CAAAGCAAGTACCAAGCGGCGCAACGGCGGT 26 25 1 ACCAGCGGCG 0.397917 -276 TGGGCGTACTGGCGTGCGCCATTGCAGGCCA 26 85 1 GGCTGCGCCA 0.315581 -216 CGTGCTCAACGCGCAGCGCCGATTTTTCTAC 27 111 0 GCGAGCGCCG 0.775898 -186 AGGCTATGCCGCGGTCCGCCGACTCGTCGCC 27 252 1 GCGTCCGCCG 0.804068 -45 GTTGGAGACCACCTTCAGCGAGACGTCGGTG 30 23 0 ACCTCAGCGA 0.214719 -33 GGCCCCGCTTGCCTTGTGCCAGTGACCAATT 34 121 1 GCCTGTGCCA 0.328567 -121 CGTCGGGCTCGTCTAGAGCCGACCGGGATTC 38 141 0 GTCAGAGCCG 0.411255 -107 GGCGGACTCGGTCATTCGCCGCTACCATGCC 39 106 0 GTCTTCGCCG 0.748982 -158 AGGAATCTGAGCCTTCCGTCAGCACAGCACG 39 202 0 GCCTCCGTCA 0.443002 -62 GATATCCCGAGCCGATAGCTGGCGGGCTCGG 41 11 0 GCCATAGCTG 0.192415 -146 GCAGGGTTGAGCCAACCGTCGGTTGAGCGTC 43 162 1 GCCACCGTCG 0.816428 -40 GCACACAGCGGCCATTCGTCAAGCTCCTCAA 44 55 1 GCCTTCGTCA 0.305415 -246 AAAACGATCAGCCCTTCGCGGACATGTCAGC 44 170 1 GCCTTCGCGG 0.95465 -131 GATTCGGTTGGCCGTGAGCGCTGTTTTGAGT 46 101 1 GCCTGAGCGC 0.122036 -200 TGACACGCTAACCTAGCGCGGCGACGACCCG 46 187 1 ACCAGCGCGG 0.893713 -114 CTGTCGGGTAGCCAACCCCGGCGTGCCCGAG 48 30 0 GCCACCCCGG 0.469535 -46 CACACCGACCACCCTGAGCGGGGCGATCCTG 49 12 1 ACCTGAGCGG 0.563311 -27 CCAATCTCCAACGCATCGCCGACCTGCCGCG 51 32 0 ACGATCGCCG 0.372599 -269 CGACGTTCCTAGCTTTCGCCGATTCGCGACA 51 96 1 AGCTTCGCCG 0.306648 -205 TTCCGCCCAGCTCGGCGGCCCGTTG 53 5 1 GCCAGCTCGG 0.470469 -187 CGTCGACGGTACCCATCGCCGGGGCCAAACC 56 15 1 ACCATCGCCG 0.905033 -67 *** ******* Masking position 3 Map Score: 53.1013 Number of sites scoring better than the average of aligned sites = 18927 Number in coding regions = 17543 Number in noncoding regions = 1384 Number of orfs with sites within 600 bp upstream = 835 Fraction of orfs with sites within 600 bp upstream = 0.134115 Motif number 7 CCCCCCACTTGTGGGGGCGCGCCCCCACCG 1 44 0 GTGGGGGCGC 0.859865 -45 CTTTCAGCGCTCGCCTCACTGTTC 3 287 0 CAGCGCTCGC 0.568314 -14 TGGAGTCCGCGTGCGGAGCCGATCGGTC 4 9 0 GTGCGGAGCC 0.671937 -292 TAAGCCTGGAGTGCGGTGGTGCCTGGTCGG 6 86 1 GTGCGGTGGT 0.615476 -133 GGCGAGCTGAGGCCACAACAGTT 10 4 1 GAGCTGAGGC 0.891666 -25 GCGGTCGGTAGAGCTCTGGCTGACCCAGGT 11 51 0 GAGCTCTGGC 0.823865 -250 GCGCAAGTCAGAGCGCTGGCCGCGGCGCCT 11 141 0 GAGCGCTGGC 0.926235 -160 GAGCGTTGTTGAGGTCAGGCCCGCGCCGAG 11 189 1 GAGGTCAGGC 0.494447 -112 CCGTTCGGTCGCAACTCAATCT 11 289 0 GTTCGGTCGC 0.499305 -12 CGCCGATGTTGAGCGGAGGCCACAGGTCGG 12 93 1 GAGCGGAGGC 0.956701 -39 ACTTCGCCGGGTGAGGTCGCCGGTGAAGGC 14 206 0 GTGAGGTCGC 0.624577 -95 TCGCGACGTCGAGCGGCGGCTG 15 3 0 GAGCGGCGGC 0.959949 -298 TCTGGACAGTCAGCTGTCGCAGCCGTGACC 15 35 1 CAGCTGTCGC 0.737496 -266 AAAAGGCCGTGTGCGGTGCCGGGTCGCGCT 15 200 1 GTGCGGTGCC 0.869591 -101 GTGTTCGCCGGTGGTGGGGCGGGCGGGTTG 15 269 1 GTGGTGGGGC 0.789438 -32 CTCAGTCAGGGCGGCGTGGCAGGCTTGCAT 20 64 1 GCGGCGTGGC 0.801868 -137 GCTAGGGGGCGAGCCGAGGCGATCAAACCA 23 36 1 GAGCCGAGGC 0.844467 -38 TAGCGTTCAGGAGGGGCCGCTGATACTGAG 25 69 0 GAGGGGCCGC 0.916727 -147 GTCGGTATTCGAGCCGTCACCGTTGTGCAT 25 125 0 GAGCCGTCAC 0.435432 -91 GAGGCCGCGAGAGCGCAGGCCCGCATCGCC 26 171 1 GAGCGCAGGC 0.794106 -130 CCCTAATGCCGTGGAGTGGCGTCGATCAGA 26 274 0 GTGGAGTGGC 0.767134 -27 CCAAAATTGGGTGGTGGCGCCGAAGGACCT 27 199 1 GTGGTGGCGC 0.7182 -98 CCCCAGTGGGGTGGGATACCATGAA 28 6 1 GTGGGGTGGG 0.748238 -44 CCGCACCGTAGTGCGGTGACGGGGCGGCCC 32 14 1 GTGCGGTGAC 0.846667 -161 CGTTCGACGGGTGCTGTGCCGCCTCCGCCT 32 63 0 GTGCTGTGCC 0.712971 -112 GTGAAGTCACGTGCTGAGGCACACACCACC 37 193 1 GTGCTGAGGC 0.907849 -47 GGGATGGGCCGTGGCGTGGCTGCATTACCC 38 20 0 GTGGCGTGGC 0.935068 -228 CGAGCCCGACGAGCGGACACCCCCACGGGT 38 161 1 GAGCGGACAC 0.490988 -87 TGGGGGATCCGCGCAGTGGCAAATACCCAG 39 54 0 GCGCAGTGGC 0.57643 -210 GCTCAGATTCCTGCGCTCGCCCGCACACGG 39 221 1 CTGCGCTCGC 0.611741 -43 CGACGTTAGCCAGCTGTCGCGATCGCGTCA 42 48 0 CAGCTGTCGC 0.737496 -48 CACCCATGCAGAGGGGACGCCA 42 84 1 GAGGGGACGC 0.911017 -12 AGCCATTGTTGTGCGGTAGCGCCAAAACGA 44 147 1 GTGCGGTAGC 0.710337 -154 CGTCGTGACCGTGCTGTCACCACGTCTGGT 44 224 1 GTGCTGTCAC 0.583364 -77 GGCTCGGGGCGCGGGCTGGCGCGGAGGAGG 44 256 1 GCGGGCTGGC 0.741997 -45 GAACACAACCGTGCGGCCGCGGAGTTCGTC 46 50 0 GTGCGGCCGC 0.946303 -251 ATACGACATCATGGTGTGGCTATTGCCTTC 46 133 0 ATGGTGTGGC 0.434758 -168 GACGACCCGGGCGGTGTGGCGGCTCGGCAG 46 209 1 GCGGTGTGGC 0.859942 -92 CCGCCTACCTCAGCGGCGGCGCCGGCGACC 47 93 0 CAGCGGCGGC 0.786855 -208 GAGCAAGGGCGTGCTGTCGATTTCGACGAC 47 139 0 GTGCTGTCGA 0.417157 -162 AACGCGATGTGAGGGGTGGCTACCATGGCG 47 220 0 GAGGGGTGGC 0.979987 -81 TCACTGCAACGAGCTGCCGCTGCAATTACA 50 82 1 GAGCTGCCGC 0.85871 -43 GAAGTCGGATGAGGCGCGGCAGGTCGGCGA 51 18 1 GAGGCGCGGC 0.800365 -283 ATTCGCGACAAAGCCGTCGCCGATACGCGG 51 117 1 AAGCCGTCGC 0.297702 -184 GGCGGAGCCGGTGGTGTCGCAGCAGGGACG 51 196 1 GTGGTGTCGC 0.93695 -105 GGTTCTTTCGGTGGGGTGGGTCTGCCCCGA 51 226 0 GTGGGGTGGG 0.748238 -75 ACTGTGGAATGTGGGGTGGAGCAACGGGCC 53 27 0 GTGGGGTGGA 0.657694 -165 ACACTTATACCTGGGGTCGCAAAACGACGG 53 160 1 CTGGGGTCGC 0.860028 -32 ********** Masking position 3 Map Score: 53.5696 Number of sites scoring better than the average of aligned sites = 9281 Number in coding regions = 8566 Number in noncoding regions = 715 Number of orfs with sites within 600 bp upstream = 568 Fraction of orfs with sites within 600 bp upstream = 0.0912303 Motif number 8 CTGGCGACGATGCAGAGCGCAGAGAAGCGGTG 1 17 1 TGCAGGCGCG 0.942879 -72 ACTTTGACGGTGGTCGGCGCGGGTCAACCCCG 2 32 0 TGGTCGCGCG 0.500031 -92 TCTCACAGTACGGTGGGCGAAGGGGGACTTGA 3 16 1 CGGTGGCGAG 0.721791 -285 CCAGGGGCGCCGGCGGGCTCAGTGGGCGTGGC 3 163 1 CGGCGGCTCG 0.478194 -138 CGGGCGGCCCCGGTGGGCGACGTCTGCCACCA 4 160 0 CGGTGGCGAG 0.72148 -141 CCGGACGAACCGGGGGGCCCGGGCGGCCCCGG 4 179 0 CGGGGGCCCG 0.593282 -122 CCGCGGCGTGTCGTGTGCGCAATGTCAGTGTC 6 39 0 TCGTGGCGCA 0.811167 -180 GGGTTAAGCCTGGAGTGCGGTGGTGCCTGGTC 6 82 1 TGGAGGCGGG 0.624151 -137 GAATGTCCAACGGAGAGTGCAAAATACC 9 15 1 CGGAGGTGCA 0.874039 -18 CAGCACGGCCTGCAGTGCGTCGCGGGCACGCG 11 103 0 TGCAGGCGTG 0.502681 -198 CTGCAGGCCGTGCTGCGCGCCAGGCGCCGCGG 11 120 1 TGCTGGCGCA 0.843602 -181 CAAGTCAGAGCGCTGGCCGCGGCGCCTGGCGC 11 136 0 CGCTGCCGCG 0.841094 -165 AAAGTCGCGGCCCTCGGCGCGGGCCTGACCTC 11 199 0 CCCTCGCGCG 0.594033 -102 GGCTCTCCCGCGCCGCGCGCGATTGTAGCGAG 11 231 0 CGCCGGCGCA 0.688191 -70 CGCCAGTGCATCCAGCGGGCCATAGGGAACCG 13 61 1 TCCAGGGGCA 0.0940216 -83 CGGCCAATTGCCGTGCGCGTCAATGGATTACC 15 119 0 CCGTGGCGTA 0.479846 -182 GGCGAAAAGGCCGTGTGCGGTGCCGGGTCGCG 15 196 1 CCGTGGCGGG 0.767619 -105 ACCAACGTAGTCCAGATCGCCAGCTCAGCGGA 16 54 0 TCCAGTCGCA 0.124101 -98 TTGGCGCCAGCCGTGATTGCCGCGTGAGCCCC 17 49 1 CCGTGTTGCG 0.342327 -60 GTTCCGTCTCCCGTGCGCGTGGCATCGTGGAA 17 84 1 CCGTGGCGTG 0.730301 -25 GTTGGTCTGTTGCTGGGCGCGGCCGCGATCTT 18 126 0 TGCTGGCGCG 0.941989 -175 ACGCTTGCGGCGGCGGGCGCGACGATCCGGTT 18 162 1 CGGCGGCGCA 0.677028 -139 TCCTCGACGGCTGTGGGTGCGGCTTGAGAGGC 18 204 1 CTGTGGTGCG 0.474339 -97 AACGCGCAACTGCCGCGTGCGGCGCGACTGCC 20 30 0 TGCCGGTGCG 0.700623 -171 GGCTTGCATTTCGAGAGCGCTGAACAGAAATC 20 85 1 TCGAGGCGCG 0.926923 -116 GCGGTGCGAATGCAGGGTGCGGGTTAACGAGT 20 123 1 TGCAGGTGCG 0.81078 -78 GACTGCCGATCGCGGCGCGCCGGCTCATGCTC 21 121 1 CGCGGGCGCG 0.761932 -180 TTCCCCGCAGCGCCCGGCTAATGGTGC 23 6 1 CGCAGGCCCG 0.823397 -68 GATCAAACCACCGAGTGTTCCGGCCGCG 23 56 1 CCGAGGTTCG 0.266492 -18 CGGCGCAGGGTACTACATGCTCCTT 25 4 1 CGCAGGTACA 0.0830893 -212 CACTCGCCACCGGTGGTCGCCGAGCCACCGAC 25 160 0 CGGTGTCGCG 0.732245 -56 CTGGGCGTACTGGCGTGCGCCATTGCAGGCCA 26 84 1 TGGCGGCGCA 0.793475 -217 TCGGCCCCCGCCGAGGCCGCTGACCGTCGCCC 26 141 0 CCGAGCCGCG 0.805111 -160 GGCCGAGGCCGCGAGAGCGCAGGCCCGCATCG 26 167 1 GCGAGGCGCG 0.601978 -134 CCGCGACAAACGGCGAGTGCCGCCGAGCACGA 26 214 1 CGGCGGTGCG 0.91185 -87 TAGCTGCTTTCGCAGAGCCCCGTGGTCCGCTT 27 52 0 CGCAGGCCCG 0.841919 -245 GAAAAATCGGCGCTGCGCGTTGAGCACGAACC 27 114 1 CGCTGGCGTG 0.780614 -183 TGAGCACGAACCGAGTGTGCCATCAACGGACG 27 134 1 CCGAGGTGCA 0.796791 -163 CACGATAACCCGCAGCGTGCTGATTGCCCGCC 31 73 0 CGCAGGTGCG 0.937825 -28 CTTCCCGCTGCTCAGCGCGCGAAGCAGGAGGC 36 51 1 CTCAGGCGCA 0.456713 -48 CGTGACCGGACGGTGACTGCCGCGCTCAATCT 37 44 0 CGGTGCTGCG 0.655422 -196 CACTCTCGGGTGGTGTGTGCCTCAGCACGTGA 37 199 0 TGGTGGTGCT 0.123599 -41 CACACACCACCCGAGAGTGCCAAGGAGGTTAC 37 212 1 CCGAGGTGCA 0.796742 -28 CATACCACGTCCCAGGGCGCTATCCGCAGCGT 38 195 0 CCCAGGCGCA 0.917447 -53 CCGAGCCCGCCAGCTATCGGCT 41 1 1 CCGAGCCGCA 0.473411 -156 GACGAATGGCCGCTGTGTGCGATATCTGCGGG 44 43 0 CGCTGGTGCA 0.836074 -258 ATTCGGTTGGCCGTGAGCGCTGTTTTGAGTCG 46 102 1 CCGTGGCGCG 0.97793 -199 GTCGTATAGATGGTGAGCGCAGCGGTGATCAT 46 156 1 TGGTGGCGCG 0.956924 -145 CGCCACGCCGTGGGGCGTGCGACATGAACAAC 46 238 0 TGGGGGTGCA 0.324708 -63 TAGCCAACCCCGGCGTGCCCGAGGCGTGCCAG 48 21 0 CGGCGGCCCA 0.570072 -55 ACACCGACCACCCTGAGCGGGGCGATCCTGGA 49 13 1 CCCTGGCGGG 0.707539 -26 AAGCCAAGCCCGCATTGCGCTGCAGACGTCGT 56 49 0 CGCATGCGCG 0.487069 -33 ***** **** * Masking position 5 Map Score: 62.9968 Number of sites scoring better than the average of aligned sites = 18498 Number in coding regions = 17158 Number in noncoding regions = 1340 Number of orfs with sites within 600 bp upstream = 768 Fraction of orfs with sites within 600 bp upstream = 0.123354 Motif number 9 GGCGGGCTCAGTGGGCGTGGCCGGCCCTTTCC 3 174 1 GTGGGGTGCC 0.934451 -127 ACGTCGCCCACCGGGGCCGCCCGGGCCCCCCG 4 169 1 CCGGGCCGCC 0.701697 -132 CCCTCGGTTGGGGCAGCCGGCCGGCAGGCTGT 4 211 0 GGGCACCGCC 0.505563 -90 CCAACCGAGGGTGGACTTGCCCCGGGTCGGCC 4 232 1 GTGGATTGCC 0.914029 -69 TCCATTTCCAGTTGATCTGGCCGACCCGGGGC 4 250 0 GTTGACTGCC 0.742458 -51 GGCCCTCGGCGCGGGCCTGACCTCAACAACGC 11 191 0 GCGGGCTGCC 0.965868 -110 TGGCGGGCACGTGAAACCGACCCAAACGATCC 14 88 0 GTGAACCGCC 0.795717 -213 CAGGGTGCGCGTGCACCTGGCCCGGGTGGTAA 15 92 1 GTGCACTGCC 0.886623 -209 CACTGATGACGACGGATCGCCCCCGGGGAGTG 18 56 1 GACGGTCGCC 0.427967 -245 TAGCAGAAGCGTGGGCCTGGCCCCCCAACCCG 18 247 1 GTGGGCTGCC 0.990578 -54 CCGGTGGCGAGTGGATCCGCCACCACGACCCC 25 179 1 GTGGACCGCA 0.841033 -37 ACGCCCAGGTGTGGGTTTCGCCATCCGGGAAG 26 60 0 GTGGGTTCCC 0.491364 -241 CTACTGCTCTGACGGGCTGTCCGTCAAGGTGT 32 100 0 GACGGCTGCC 0.856873 -75 CACTGCCAAGGGGAATCCGCCCCTGGCTACTG 32 126 0 GGGAACCGCC 0.603361 -49 AAGACTTCTGGTGGATCTGGCCAGCTATGGAC 37 86 1 GTGGACTGCC 0.984917 -154 GTGAGTACCCGTGGGGGTGTCCGCTCGTCGGG 38 165 0 GTGGGGTGCC 0.934466 -83 GAGTCCGCCTGTGGAACTGTCCGCTCCGCAGT 39 128 1 GTGGACTGCC 0.984917 -136 TCTTAGGTCCGGCGACCTGGCCGGGACGCCTA 44 89 1 GGCGACTGCC 0.814165 -212 AGCACACCGAGAGGGATCGACCA 45 2 0 GAGGGTCGCC 0.810176 -68 AGCTCGGATACTGGAGCTGGCAAGAAAACCGA 47 251 0 CTGGACTGCA 0.428228 -50 ATGACATCACGAGGGTCTGACAAGCTCGGATA 47 273 0 GAGGGCTGCA 0.783046 -28 TTTCGGTGGGGTGGGTCTGCCCCGACGTCCCT 51 219 0 GTGGGCTGCC 0.990591 -82 ***** *** ** Masking position 11 Map Score: 24.6859 Number of sites scoring better than the average of aligned sites = 2848 Number in coding regions = 2653 Number in noncoding regions = 195 Number of orfs with sites within 600 bp upstream = 181 Fraction of orfs with sites within 600 bp upstream = 0.0290716 Motif number 10 TGGGCTCGAAGCTGCCGGGGTTGACCCGCG 2 17 1 GCTGCCGGGG 0.787695 -107 CCGGCCCCGCGCTGCCGAGCACGTCAGCAA 2 73 0 GCTGCCGAGC 0.731116 -51 ACCGTCTGCTCCGGCCCCGCGCTGCCGAGC 2 83 0 CCGGCCCCGC 0.893219 -41 GGCCCCATCCGCTGCCAGGGGCGCCGGCGG 3 149 1 GCTGCCAGGG 0.902888 -152 GCGGAAAGGGCCGGCCACGCCCACTGAGCC 3 178 0 CCGGCCACGC 0.970565 -123 CGCCGATGCCCCCGCCGCGCGACCCGCTCG 4 72 1 CCCGCCGCGC 0.954094 -229 GGCCGCGTTGGCCGCCCCGCCCGGTAAACC 4 112 1 GCCGCCCCGC 0.937428 -189 AGGAGGGTCGCCTGCGTCGGCAACTCGCCC 6 148 0 CCTGCGTCGG 0.295822 -71 AGGCGACCCTCCTGCCACGGATCGACCGTG 6 165 1 CCTGCCACGG 0.960202 -54 GTGGTCGTGTGCGGCCACGGTCGATCCGTG 6 180 0 GCGGCCACGG 0.929622 -39 TCGGCCTGCCAGGCACTGGCTGTT 7 5 1 CCTGCCAGGC 0.958691 -99 TGTGATTGGCGCGACCACGCCGCGGTCGGT 11 72 0 GCGACCACGC 0.618378 -229 ACAGCGCGTGCCCGCGACGCACTGCAGGCC 11 99 1 CCCGCGACGC 0.944207 -202 CCAAACGATCCCAACGACGCGGCAACGCCT 14 69 0 CCAACGACGC 0.224661 -232 GCTGGTCACGGCTGCGACAGCTGACTGTCC 15 38 0 GCTGCGACAG 0.597335 -263 TGTCGGGCTAGCTGCCCGAGATGTCCGCTG 15 64 0 GCTGCCCGAG 0.27821 -237 TGCTTCCACGATGCCACGCGCACGGGAGA 17 90 0 GATGCCACGC 0.79343 -19 TCCGAAGATCGCGGCCGCGCCCAGCAACAG 18 122 1 GCGGCCGCGC 0.93971 -179 CCGGACATGCTGTCACGGTGGCGCATAC 18 283 0 GCTGTCACGG 0.401778 -18 GAAATGCAAGCCTGCCACGCCGCCCTGACT 20 67 0 CCTGCCACGC 0.986183 -134 GAGTGTGAATCCTGCGACGCGACATGCCGG 21 154 1 CCTGCGACGC 0.959686 -147 GATGATGCCCGCCGCCCCGCGGCGCGCCTA 21 211 1 GCCGCCCCGC 0.937428 -90 GACGATACGCGCCGCGAGGCGGCGGGCTGA 21 259 0 GCCGCGAGGC 0.862878 -42 TCCTCCTCGGCCCGCCACGCGGGCCGCCCC 32 34 0 CCCGCCACGC 0.981155 -141 CGTCAGAGCAGTAGCCAGGGGCGGATTCCC 32 118 1 GTAGCCAGGG 0.109058 -57 CCGGACGGTGACTGCCGCGCTCAATCTTTG 37 41 0 ACTGCCGCGC 0.585525 -199 CGAGGGTAATGCAGCCACGCCACGGCCCAT 38 17 1 GCAGCCACGC 0.960844 -231 ACCTCACCTCGCAGCCAGACGCTCAACCGA 43 180 0 GCAGCCAGAC 0.550479 -22 CAGCGGTGATCATGACACGCTAACCTAGCG 46 175 1 CATGACACGC 0.0707172 -126 CAACTGCCGAGCCGCCACACCGCCCGGGTC 46 212 0 GCCGCCACAC 0.904563 -89 GACCGGGCGTGTCGCCACGCCGTGGGGCGT 46 252 0 GTCGCCACGC 0.737055 -49 GACCGAGACGCCAGCGAAGCCGACGTCGTC 47 67 0 CCAGCGAAGC 0.360389 -234 GTGCCCGAGGCGTGCCAGACTCAAACAC 48 9 0 CGTGCCAGAC 0.119657 -67 GCATCGCCGACCTGCCGCGCCTCATCCGAC 51 21 0 CCTGCCGCGC 0.966083 -280 CGACGTCCCTGCTGCGACACCACCGGCTCC 51 199 0 GCTGCGACAC 0.814402 -102 CACATCTTCACCTGCGAAACATGTTCTTAA 53 94 1 CCTGCGAAAC 0.229727 -98 ********** Masking position 4 Map Score: 42.849 Number of sites scoring better than the average of aligned sites = 11942 Number in coding regions = 11090 Number in noncoding regions = 852 Number of orfs with sites within 600 bp upstream = 568 Fraction of orfs with sites within 600 bp upstream = 0.0912303 Motif number 11 AAGCTGCCGGGGTTGACCCGCGCCGACCACC 2 25 1 GGTTACCCGC 0.922554 -99 TCGAGCGCGGCCTTGACCGCCTCGATGGAGT 4 33 0 CCTTACCGCC 0.805462 -268 GTCACGGCCGCGTTGGCCGCCCCGCCCGGTA 4 107 1 CGTTGCCGCC 0.952467 -194 CCCCCGCGGCGGTTTACCGGGCGGGGCGGCC 4 121 0 GGTTACCGGG 0.861701 -180 CGCACTCCAGGCTTAACCCGGTGCGACGATC 6 70 0 GCTTACCCGG 0.432136 -149 CGCTAGCCGCCGGTGACCGGCGATTGGAGAT 11 262 1 CGGTACCGGC 0.910666 -39 TCCGCCGGTGCGTTCACCGCGTCAGGCGGCT 12 20 1 CGTTACCGCG 0.861701 -112 CATAGGGAACCGATTACCGCCTGCTTACGAC 13 81 1 CGATACCGCC 0.931191 -63 GTCCGGACTGCCTTCACCGGCGACCTCACCC 14 197 1 CCTTACCGGC 0.860694 -104 GCGCGTCAATGGATTACCACCCGGGCCAGGT 15 106 0 GGATACCACC 0.427575 -195 TGATGACGACGGATCGCCCCCGGGGAGTGGC 18 59 1 GGATGCCCCC 0.842782 -242 GCGCGACTGCCGACTACCGCCGTACGCCGC 20 10 0 CGACACCGCC 0.630734 -191 GTTCTACACTCGTTAACCCGCACCCTGCATT 20 131 0 CGTTACCCGC 0.946741 -70 CTCGCGGGCAGGATTACCGCCCGACGGTTCC 21 69 0 GGATACCGCC 0.900686 -232 ACCACACGACGGCTGGCCGGCATGTCGCGTC 21 169 0 GGCTGCCGGC 0.823836 -132 GCCGTCGTGTGGTTCACACCCGGCGATGATG 21 187 1 GGTTACACCC 0.286196 -114 GCGCCTAAGCCGATTGCCCGCCTCCTCAGCC 21 234 1 CGATGCCCGC 0.922698 -67 CGTTCACACGATAACCCGCAGCGTGCTGA 31 82 0 CGATACCCGC 0.922903 -19 ACCTTATCCAGGTTCTCCGGCGGGTGTAGGC 35 12 0 GGTTTCCGGC 0.589791 -27 CAGTCTACCTCGTTGACCTGCAACGTAGTGG 39 156 1 CGTTACCTGC 0.583444 -108 CAGATTCCTGCGCTCGCCCGCACACGGGTGC 39 224 1 CGCTGCCCGC 0.805326 -40 GTACTACCGACGTTAGCCAGCTGTCGCGATC 42 54 0 CGTTGCCAGC 0.711211 -42 TCAGCACCCGCCTTGGCCGGGAGAGCGGCGT 44 196 1 CCTTGCCGGG 0.656369 -105 GCTGGCGTCTCGGTCGCCGGCGCCGCCGCTG 47 82 1 CGGTGCCGGC 0.910435 -219 CGGATCCAGGATCGCCCCGCTCAGGGTGG 49 20 0 GGATGCCCCG 0.624348 -19 AAGCTAGGAACGTCGACCGCGTCGTCAAACG 51 80 0 CGTCACCGCG 0.440219 -221 TCTCCGTCGGCGTTGACCCCCGTGAGAGGGT 54 16 1 CGTTACCCCC 0.922552 -26 TGCATTTAGGGGATCACAGGCACCTTGAAAT 55 162 1 GGATACAGGC 0.404647 -139 TACGGGGTGCGGGTAGCCGGCGGCGAATTCG 55 239 0 GGGTGCCGGC 0.871994 -62 TCGACGGTACCCATCGCCGGGGCCAAACCGT 56 17 1 CCATGCCGGG 0.562611 -65 **** ****** Masking position 7 Map Score: 35.6988 Number of sites scoring better than the average of aligned sites = 7228 Number in coding regions = 6771 Number in noncoding regions = 457 Number of orfs with sites within 600 bp upstream = 356 Fraction of orfs with sites within 600 bp upstream = 0.0571796 Motif number 12 GCTGTCCGGACGAACCGGGGGGCCCGGGCG 4 186 0 CGAACCGGGG 0.934733 -115 TTGATCTGGCCGACCCGGGGCAAGTCCACC 4 241 0 CGACCCGGGG 0.971452 -60 GTCAGTGTCGCGAACGGCGAGGCCTATCGC 6 18 0 CGAACGGCGA 0.263357 -201 CCCGGTGCGACGATCCGCGGCGTGTCGTGT 6 55 0 CGATCCGCGG 0.987776 -164 CGGCCACGGTCGATCCGTGGCAGGAGGGTC 6 169 0 CGATCCGTGG 0.964849 -50 CACTTCCGGCCGACCTGTGGCCTCCGCTCA 12 102 0 CGACCTGTGG 0.680373 -30 GCAAATACGCCGATCCGAGGAGGGCC 13 128 1 CGATCCGAGG 0.925534 -16 TCCACTGATTCGATCCGTGAGCCGTTAGCC 14 39 1 CGATCCGTGA 0.815655 -262 GTTTCGGTGCCGGTCCGGGGCATGGCCATC 16 26 1 CGGTCCGGGG 0.804356 -126 TCCCCGGGGGCGATCCGTCGTCATCAGTGC 18 55 0 CGATCCGTCG 0.70469 -246 GCAAGTCGGCCGACTCGCGGGCAGGATTAC 21 83 0 CGACTCGCGG 0.96737 -218 TGATGCCCGCCGCCCCGCGGCGCGCCTAAG 21 213 1 CGCCCCGCGG 0.961526 -88 AGCGCGCCGACGATACGCGCCGCGAGGCGG 21 267 0 CGATACGCGC 0.437294 -34 TGCTAGGGGGCGAGCCGAGGCGATCAAACC 23 35 1 CGAGCCGAGG 0.680885 -39 GCCGAGCCACCGACCCGGGGTCGGTATTCG 25 144 0 CGACCCGGGG 0.971452 -72 GCGTTGAGCACGAACCGAGTGTGCCATCAA 27 130 1 CGAACCGAGT 0.216152 -167 CCAGGCTCATCGCCACGCGGCAGGTCCTTC 27 220 0 CGCCACGCGG 0.803068 -77 GACGAGTCGGCGGACCGCGGCATAGCCTGG 27 250 0 CGGACCGCGG 0.878356 -47 CGCGGTCCGCCGACTCGTCGCCGCGCGGCG 27 261 1 CGACTCGTCG 0.466677 -36 CTCCTCGGCCCGCCACGCGGGCCGCCCCGT 32 32 0 CGCCACGCGG 0.803068 -143 ATGCTGGCACCGAATCCCGGTCGGCTCTAG 38 130 1 CGAATCCCGG 0.361794 -118 GCAGACGACACGACTTGTGGTTACAGGACA 40 14 1 CGACTTGTGG 0.370824 -39 AAGCCCCGTCCGAACCGTGATTGGGCAACG 43 52 1 CGAACCGTGA 0.711695 -150 TAGCTTTCGCCGATTCGCGACAAAGCCGTC 51 105 1 CGATTCGCGA 0.782832 -196 AAGCCGTCGCCGATACGCGGCACTATCTTC 51 127 1 CGATACGCGG 0.929503 -174 CTATCTTCGCCAATTCGCGGATATCTCCTC 51 149 1 CAATTCGCGG 0.406728 -152 ATCTCCTCACCGATTCGCGATATCTGGCGG 51 171 1 CGATTCGCGA 0.782832 -130 ********** Masking position 1 Map Score: 28.5111 Number of sites scoring better than the average of aligned sites = 3236 Number in coding regions = 2923 Number in noncoding regions = 313 Number of orfs with sites within 600 bp upstream = 281 Fraction of orfs with sites within 600 bp upstream = 0.0451333 Motif number 13 CGGGGTTGACCCGCGCCGACCACCGTCAAA 2 32 1 CCGCGCCGAC 0.949082 -92 AGTCCGCGTGCGGAGCCGATCGGTC 4 6 0 CGGAGCCGAT 0.743225 -295 CGGCAACTCGCCCAGGCTACACGAGAGCCC 6 131 0 CCCAGGCTAC 0.60785 -88 TTCTTCTTCGCCGAGCCTACGTAACCGCAC 7 43 0 CCGAGCCTAC 0.976791 -61 AGCCGCCGAACCCAGGCGGACGCAGGAGGA 7 80 1 CCCAGGCGGA 0.421835 -24 ACTACCGATACCGCGCCTAATCCTGATGGC 14 267 0 CCGCGCCTAA 0.733901 -34 CAGACCGAGACCGAGCCGGCCAATTGCCGT 15 137 0 CCGAGCCGGC 0.982438 -164 CAGAAATTGTCCCAGCCTTAAGGGTCCGGG 16 103 0 CCCAGCCTTA 0.522881 -49 AGGGGGCGAGCCGAGGCGATCAAACCACCG 23 39 1 CCGAGGCGAT 0.895966 -35 GGGTCGGTATTCGAGCCGTCACCGTTGTGC 25 127 0 TCGAGCCGTC 0.583771 -89 GCCCGCATCGCCGAGCCTGTAGATACCGCG 26 189 1 CCGAGCCTGT 0.919322 -112 GCTGTCTTCGCCGAGCCTTTAGTTATCGTG 26 241 0 CCGAGCCTTT 0.87781 -60 CCGAGCCCGCCAGCTATCGG 41 1 1 CCGAGCCCGC 0.845225 -156 AACCGATATCCCGAGCCGATAGCTGGCGGG 41 16 0 CCGAGCCGAT 0.980043 -141 TGGGCACCACCCGAGCAGATCGCACAGGCC 43 12 0 CCGAGCAGAT 0.661352 -190 AGCCCGCGCCCCGAGCCTAACCAGACGTGG 44 243 0 CCGAGCCTAA 0.937126 -58 CCGCCATTGACCGAGCCGACGAACTCCGCG 46 33 1 CCGAGCCGAC 0.99017 -268 TGAACAACTGCCGAGCCGCCACACCGCCCG 46 216 0 CCGAGCCGCC 0.940785 -85 ACGTCGTCGACCAAGCCTTCGTCGTTCCGG 47 45 0 CCAAGCCTTC 0.578676 -256 CACCTGCTCGCCTAGCCGAACGTGTGGTCT 51 261 1 CCTAGCCGAA 0.653447 -40 CCTCAGGTGACCAAGCCGATATCGGCTTGC 55 275 0 CCAAGCCGAT 0.8207 -26 ********** Masking position 5 Map Score: 22.745 Number of sites scoring better than the average of aligned sites = 3344 Number in coding regions = 3087 Number in noncoding regions = 257 Number of orfs with sites within 600 bp upstream = 237 Fraction of orfs with sites within 600 bp upstream = 0.0380662 Motif number 14 TGTCAATCAATCATGGTATCGGGACAGTGT 3 214 0 TCATGGTATC 0.686715 -87 TCAGGATTAGGCGCGGTATCGGTAGTTGAA 14 271 1 GCGCGGTATC 0.766288 -30 CCGCTCGACGTCGCGAAGTCTGGACAGTCA 15 17 1 TCGCGAAGTC 0.529442 -284 GCGCACCCTGTCGGGCTAGCTGCCCGAGAT 15 72 0 TCGGGCTAGC 0.641238 -229 ACCTCCTGTGTCGGGGTAGCTATCAGAAAT 16 126 0 TCGGGGTAGC 0.932447 -26 GCGCGTGGCATCGTGGAAGCA 17 98 1 TCGTGGAAGC 0.617981 -11 GGACATGCTGTCACGGTGGCGCATACGCTC 18 279 0 TCACGGTGGC 0.750051 -22 CTCGAGGGGGTCGTGGTGGCGGATCCACTC 25 187 0 TCGTGGTGGC 0.8562 -29 TCGCCGTTTGTCGCGGTATCTACAGGCTCG 26 200 0 TCGCGGTATC 0.964965 -101 CCTCACCCGTTCATGGTATCCCACCCCACT 28 15 0 TCATGGTATC 0.686715 -35 TTCACCCGTTTCGGGGTAACGCACCCCGCC 34 71 1 TCGGGGTAAC 0.64163 -171 AGCTATCGGCTCGGGATATCGGTTAACGAT 41 22 1 TCGGGATATC 0.872929 -135 AGCCGCCAACTCACGATATCGTTAACCGAT 41 39 0 TCACGATATC 0.728941 -118 TAGCCAGCTGTCGCGATCGCGTCAGGAGGC 42 42 0 TCGCGATCGC 0.674758 -54 TGTCAGACCCTCGTGATGTCATGCGGCT 47 283 1 TCGTGATGTC 0.747683 -18 CATCTATATATCGCGATATCAATATGTATT 50 46 0 TCGCGATATC 0.930689 -79 CCTCACCGATTCGCGATATCTGGCGGAGCC 51 175 1 TCGCGATATC 0.930689 -126 ********** Masking position 5 Map Score: 11.2079 Number of sites scoring better than the average of aligned sites = 1542 Number in coding regions = 1426 Number in noncoding regions = 116 Number of orfs with sites within 600 bp upstream = 111 Fraction of orfs with sites within 600 bp upstream = 0.0178285 Motif number 15 AGGACACTGGCACCTGAAGCCAGCGCGTCT 3 63 1 CACCTGAAGC 0.854384 -238 CGCACACGACCACAGGAGGTGATGAGGTTC 6 197 1 CACAGGAGGT 0.916299 -22 AATCGCCGGTCACCGGCGGCTAGCGGCTCT 11 257 0 CACCGGCGGC 0.981062 -44 GCGGTGAACGCACCGGCGGATAGTCGTCT 12 10 0 CACCGGCGGA 0.852615 -122 GCTACCCCGACACAGGAGGTTACGGG 16 136 1 CACAGGAGGT 0.916299 -16 GCTCGGCGACCACCGGTGGCGAGTGGATCC 25 167 1 CACCGGTGGC 0.949982 -49 CTGGGCCTCACACAAGAGACGAGCCCCGAA 27 17 1 CACAAGAGAC 0.423474 -280 TCCCGAGAAACACCGGAGTCCGGCGCTCG 29 10 0 CACCGGAGTC 0.954117 -47 TGGCCAGATCCACCAGAAGTCTTTTTGCCG 37 79 0 CACCAGAAGT 0.755434 -161 CGCCGGACCGCACCGGAAGCAGAAGGCCCA 53 129 0 CACCGGAAGC 0.967529 -63 GCGCGAAGTTCACCAGAGTCCCGGACACGC 55 118 1 CACCAGAGTC 0.854384 -183 TCGGCTTGGTCACCTGAGGTGTTCT 55 286 1 CACCTGAGGT 0.907108 -15 ********** Masking position 2 Map Score: 7.38107 Number of sites scoring better than the average of aligned sites = 2244 Number in coding regions = 2138 Number in noncoding regions = 106 Number of orfs with sites within 600 bp upstream = 108 Fraction of orfs with sites within 600 bp upstream = 0.0173466