AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00620_mtub_reg_100.orf -o00620_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 Rv0012 93 hypothetical protein Rv0012 #2 pabA 36 pabA #3 Rv0144 101 hypothetical protein Rv0144 #4 Rv0145 88 hypothetical protein Rv0145 #5 Rv0146 42 hypothetical protein Rv0146 #6 Rv0147 94 hypothetical protein Rv0147 #7 Rv0223c 98 hypothetical protein Rv0223c #8 Rv0224c 35 hypothetical protein Rv0224c #9 fadA2 141 fadA2 #10 Rv0407 77 hypothetical protein Rv0407 #11 Rv0458 67 hypothetical protein Rv0458 #12 Rv0460 59 hypothetical protein Rv0460 #13 Rv0461 37 hypothetical protein Rv0461 #14 Rv0462 63 hypothetical protein Rv0462 #15 Rv0692 164 hypothetical protein Rv0692 #16 adhB 98 adhB #17 Rv0767c 201 hypothetical protein Rv0767c #18 lpdB 300 lpdB #19 fadA 156 fadA #20 accD3 26 accD3 #21 Rv0976c 197 hypothetical protein Rv0976c #22 pabB 115 pabB #23 ppdK 212 ppdK #24 mdh 170 mdh #25 fadA4 300 fadA4 #26 pykA 107 pykA #27 glcB 275 glcB #28 lldD2 22 lldD2 #29 pks12 300 pks12 #30 aceE 51 aceE #31 adhE2 300 adhE2 #32 mez 112 mez #33 pdhA 258 pdhA #34 scoA 82 scoA #35 fadD35 115 fadD35 #36 pca 24 pca #37 Rv2969c 96 hypothetical protein Rv2969c #38 lipN 300 lipN #39 accA3 107 accA3 #40 Rv3292 30 hypothetical protein Rv3292 #41 aldB 26 aldB #42 lpdA 202 lpdA #43 mhpE 60 mhpE #44 Rv3536c 72 hypothetical protein Rv3536c #45 fadA6 64 fadA6 #46 Rv3557c 300 hypothetical protein Rv3557c #47 acs 300 acs #48 leuA 256 leuA Motif number 1 ATAGAAGTTGCAGCTGCAGGCATACCTTGT 1 73 1 CAGCTGCAGG 0.621287 -21 CCTGACCCTGCCGGCAGTCGT 2 2 0 CCGGCAGTCG 0.450648 -35 CGACGATCAGCAGCGCAACCATGGCCCAGG 3 33 1 CAGCGCAACC 0.910938 -69 GATCTCCTCGCCGCACAGCGGCGGTGATCG 3 75 0 CCGCACAGCG 0.893886 -27 CACTACGCTTCGGGGCCGCCGGTTAGGTCT 4 14 0 CGGGGCCGCC 0.984872 -75 ATGCGCCGCTCCTCCTCATCGCTGC 7 84 0 CCGCTCCTCC 0.969668 -15 ACCCTACGGCCCGCTAGGCTATCGACCA 8 9 0 CCGCTAGGCT 0.670594 -27 GTGTGGGGGTCGGGCGCGCCAATACACGTA 9 30 1 CGGGCGCGCC 0.895237 -112 TGGCCCTCAACGGCCGATCCCCCGAACTGA 9 107 1 CGGCCGATCC 0.776919 -35 ATCGCGAGCGCGGCGAAGCCGGGCGTGGCG 10 24 1 CGGCGAAGCC 0.94611 -54 TAAACGCGACCCGCCACGCCCGGCTTCGCC 10 35 0 CCGCCACGCC 0.953811 -43 GCTCACACTACCGCCGGGGCCACAATGGCT 11 14 0 CCGCCGGGGC 0.913653 -54 CGTATTCGGCTCCTCGTCAAAATCAT 11 52 0 CGGCTCCTCG 0.936928 -16 GCTGCCATGACCGCGGAAGGGGGATCACGG 12 29 0 CCGCGGAAGG 0.785609 -31 GATTACCGGTCGGCACCCGGAACCGAGCCG 13 15 1 CGGCACCCGG 0.855574 -23 CCTACTGGGTCAGGCCGACGAGCACTCGAC 14 28 1 CAGGCCGACG 0.595054 -36 TGTAGGTCAACGGCGCTAGGGCGT 16 5 0 CGGCGCTAGG 0.608922 -94 GACCTACACTCAGCCAGTCGGCGTTCCGGC 16 27 1 CAGCCAGTCG 0.543766 -72 GTCGGCGTTCCGGCCGAGGCTAGGGACCAC 16 43 1 CGGCCGAGGC 0.839114 -56 ATCCGCAAGGCCGCTACACCGTCCTGACCG 17 82 1 CCGCTACACC 0.889244 -120 ATGGGACTGTCCGCGACGCGACGTGGCCCC 17 120 0 CCGCGACGCG 0.970423 -82 CGGATGGTCGCGGCAGGAGGCAAGCCAGTC 17 169 0 CGGCAGGAGG 0.559464 -33 GTGAGAAGGACCGGCCGGCGT 18 2 0 CCGGCCGGCG 0.891646 -299 CCCAAGAGGACGGCAGACGCAAAGTGAGCC 18 62 1 CGGCAGACGC 0.552145 -239 GAACAAACCACCGCGACACGGCGTCTGTCA 18 109 1 CCGCGACACG 0.932401 -192 TAGGCCGGCACGGCTCACCGGCGCTAGGCG 18 238 1 CGGCTCACCG 0.891604 -63 CGGACTCTGCCAGCGACGCTACGCGCGCCT 18 263 0 CAGCGACGCT 0.754547 -38 TCGAGCCTATCCGGGCGACGATGCGCGCCG 19 16 1 CCGGGCGACG 0.858551 -141 GGCACCCTAACAGGGCCCCCGGCCAACCTG 19 68 0 CAGGGCCCCC 0.925512 -89 TGTTAGGGTGCCGGTACGGGACCTAGTCTT 19 86 1 CCGGTACGGG 0.676372 -71 GGTGCTTTGCCGGCCCCAGGAGGTCAGCGC 21 12 0 CGGCCCCAGG 0.919749 -186 CGTTTCGCTACGGGACGCCGGGTGCTTTGC 21 32 0 CGGGACGCCG 0.611293 -166 ACGGCGCAGACCGGGCCGCTTCGACTCAGG 21 78 1 CCGGGCCGCT 0.906262 -120 CCCTTGGGATCGGCGACGCTACCAACCAAC 21 149 0 CGGCGACGCT 0.895699 -49 TTCTCGCTGACCGCGAGACGTTGACGCTCG 22 30 0 CCGCGAGACG 0.889258 -86 GCTGCTCGCACAGCAACACCCCCCGGGACG 22 75 1 CAGCAACACC 0.559736 -41 TCCGTGACCGGCTCCGGTCTCCGTCCCG 22 98 0 CGGCTCCGGT 0.880687 -18 TTGGTTCGACCGGCTCCCCCGCCTAACG 23 9 0 CGGCTCCCCC 0.974819 -204 GCGGCGTGGACAGCGCACCGGCCCAACGGC 23 39 0 CAGCGCACCG 0.90821 -174 GGTGCGCTGTCCACGCCGCCAGCCACCATC 23 50 1 CCACGCCGCC 0.600693 -163 GAGACAACGCCGGCTGCCGGTGATGGTGGC 23 71 0 CGGCTGCCGG 0.568247 -142 TGTGGGCCCACAGGGGGCGCCTTGGTCAGC 23 149 0 CAGGGGGCGC 0.599087 -64 TGGATCTGATCGGGCGGTGCTCCAGGTTAC 24 29 1 CGGGCGGTGC 0.507114 -142 AAGTTCCATACCGGGACGCGTAACCTGGAG 24 48 0 CCGGGACGCG 0.906103 -123 AGATGTCCGTCCGGTGCCGGTGCGCTAGTT 24 114 1 CCGGTGCCGG 0.449092 -57 TTGCGCCGCGGAGCCCGGCACCGCC 25 6 1 CCGCGGAGCC 0.962924 -295 CCGCGGAGCCCGGCACCGCCAGCAGTGCCT 25 16 1 CGGCACCGCC 0.975548 -285 CAACGACGATCAGGGCATCCGCGAGGCACT 25 39 0 CAGGGCATCC 0.719163 -262 ACGTCCAGGTCGGCGACCGCAATACCGACG 25 123 1 CGGCGACCGC 0.933695 -178 ACTACCTCCTCAGCGCACCCGAAAGCCGAT 25 268 0 CAGCGCACCC 0.934819 -33 AACCAGACCGCGGGTAGGCGCGG 26 4 0 CGGGTAGGCG 0.712202 -104 CCACCGCGGGCAGCCCAGCCAACCAGACCG 26 24 0 CAGCCCAGCC 0.908719 -84 ACCGCCGGGTCGGCACACCGGTCAACACCA 26 51 0 CGGCACACCG 0.820818 -57 GCGGTAGGGCCGGCACCGCCGGGTCGGCAC 26 65 0 CGGCACCGCC 0.975548 -43 CCGCCGGGAGCGGCTCCGGCCACGTCGGTG 27 39 0 CGGCTCCGGC 0.979943 -237 AGTAGGCAGACCGCCCCACCCGTATGATCG 27 105 1 CCGCCCCACC 0.971103 -171 ATGATCGCTGCGGCCACTGCGTCGCGTTGC 27 128 1 CGGCCACTGC 0.798782 -148 GTCAGCACCTCGGCACCCGGCATGCTCGCT 27 163 0 CGGCACCCGG 0.855574 -113 CTACTACATCCGGCGACCCGCAACCGCAGG 27 207 0 CGGCGACCCG 0.524213 -69 CTTCACAACACAGCCGCACGAATG 29 5 0 CAGCCGCACG 0.751474 -296 GCGACTGTACCCGCCCGCCCGTCAACGCCG 29 69 0 CCGCCCGCCC 0.952791 -232 CCGCCGGATGCGGCTCCCGCCGAGTCACCG 29 239 0 CGGCTCCCGC 0.958052 -62 ATCCGGCGGTCGGCGACGGCCAATATTAGC 29 260 1 CGGCGACGGC 0.967945 -41 AACTCAAACAGCGCAAGCGAACCCGACC 30 9 1 CAGCGCAAGC 0.844554 -43 TTCGGGTGATCCGCGAGGGT 30 42 1 CCGCGAGGGT 0.74076 -10 CTCATCTGCGCCGCTCCTCCTCATCGCTTC 31 12 1 CCGCTCCTCC 0.969668 -289 GCATCGTCACCGGCGCGACTCATCTGCGCC 31 47 1 CGGCGCGACT 0.899227 -254 CTCATCTGCGCCGCTCCTGCTCATCGCTTC 31 65 1 CCGCTCCTGC 0.944402 -236 GCATCGTCACCGGCGCGACTCATCTGCGCC 31 100 1 CGGCGCGACT 0.899227 -201 CTCATCTGCGCCGCTCCTGCTCATCGCTTC 31 118 1 CCGCTCCTGC 0.944402 -183 GCATCGTCACCGGCGCGACTCATCTGCGCC 31 153 1 CGGCGCGACT 0.899227 -148 CTCATCTGCGCCGCTCCTGCTCATCGCTTC 31 171 1 CCGCTCCTGC 0.944402 -130 GCATCGTCACCGGCGCGACTCATCTGCGCC 31 206 1 CGGCGCGACT 0.899227 -95 CTCATCTGCGCCGCTCCTCCTCATCGCTTC 31 224 1 CCGCTCCTCC 0.969668 -77 CGCGCATGGTCAGCGACGCTACACCGTAGG 31 272 1 CAGCGACGCT 0.754547 -29 CTCGGCGAGGCAGGTCGAGCACACCCCGAA 32 11 0 CAGGTCGAGC 0.533514 -102 ACCCGATTGTCGGGGGCGCTCGGCGAGGCA 32 29 0 CGGGGGCGCT 0.77694 -84 TTCGGCCACCCAGCGCTTCCGACATACCGA 32 88 1 CAGCGCTTCC 0.583577 -25 CGCAGATCCCCCGCGACACGGTTGCGATGC 33 14 1 CCGCGACACG 0.932401 -245 ACCAAAGCTTCCGCTCGCCGCAACACTGGC 33 94 0 CCGCTCGCCG 0.518323 -165 AGTTGATCGCCGGCCGCACCAAAGCTTCCG 33 111 0 CGGCCGCACC 0.923702 -148 GCGGCGCTCACAGCACATCCCGCCTGGGAA 33 156 0 CAGCACATCC 0.609936 -103 GCTGTGAGCGCCGCACCACCAGCGCCGACG 33 172 1 CCGCACCACC 0.937048 -87 CCTAGACGCACCGCGGGGGCAATGGTATTC 34 15 1 CCGCGGGGGC 0.966147 -68 ACCGCAGAGCCTCCTAGCATT 34 72 0 CCGCAGAGCC 0.809934 -11 TGGCTTGCCGCCGGTACGCTAGAGGCGCCG 37 19 1 CCGGTACGCT 0.46118 -78 GGTCAGGCGACGGCGCCTCTAGCGTACCGG 37 29 0 CGGCGCCTCT 0.928568 -68 CGTCGCCTGACCGCGGCCGCGACAAGCCGA 37 47 1 CCGCGGCCGC 0.955536 -50 GGCTGTGGCTCAGCACCTGCCCAGGTGTTG 38 75 0 CAGCACCTGC 0.729038 -226 CCACAGCCTTCGGCGACGGCGGCGTAAGCC 38 97 1 CGGCGACGGC 0.967945 -204 GCGGTAGGTGCCGCGAGTCCGGCGTGCCCA 38 181 0 CCGCGAGTCC 0.926559 -120 CCGGCCGACACCGGGCAAGCGGTAGGTGCC 38 199 0 CCGGGCAAGC 0.7999 -102 GGATGTCTTTCGGGTCCTGCCGGCCGACAC 38 218 0 CGGGTCCTGC 0.823232 -83 GACACTCGATCCGCGCCGTCAGGCTGGATG 38 243 0 CCGCGCCGTC 0.696971 -58 CGCCGCTGACCCGCTCACGCGGTTCCTCGA 39 12 0 CCGCTCACGC 0.88755 -96 AGCGGGTCAGCGGCGCGACGCTTAAACTTC 39 27 1 CGGCGCGACG 0.904496 -81 GCGGCACTGCCGTTGCGATAG 40 20 0 CGGCACTGCC 0.644275 -11 AAAGCTTAGACGGCGGGGGCTCGGGTGGTA 42 16 1 CGGCGGGGGC 0.966778 -187 ACCCGCACCGCAGCGCGGCGCGATGGGTAC 42 43 0 CAGCGCGGCG 0.974072 -160 CGCTGCGGTGCGGGTCATCGTCAAGCTGTG 42 58 1 CGGGTCATCG 0.653735 -145 CTTGACTGCTCGGCTCCTCCTCACGCCGCT 42 88 1 CGGCTCCTCC 0.970239 -115 ACGATGCACGCCGCGCAGCGGCGTGAGGAG 42 104 0 CCGCGCAGCG 0.98081 -99 CAGTCCAACACAGCTCGGCGACGATGCACG 42 124 0 CAGCTCGGCG 0.936077 -79 TTGGACTGCTCGGCTCCTCCTCACGCCGCT 42 146 1 CGGCTCCTCC 0.970239 -57 ACGATGCACGCCGCGCAGCGGCGTGAGGAG 42 162 0 CCGCGCAGCG 0.98081 -41 GACACCAGCCGCGCGTCCAAGAATTCAT 43 9 1 CCGCGCGTCC 0.981544 -52 TAGAATTGCTCGGGTCGGGCGCTACTGGCC 44 24 1 CGGGTCGGGC 0.893506 -49 CGCTACTGGCCCGGTCACGCCTACGAGGGG 44 43 1 CCGGTCACGC 0.679589 -30 AACCGCTCCTCTCCCGTTGCCA 45 53 0 CCGCTCCTCT 0.828487 -12 GCATATTCTTCCGCGCGTCGTCATAGCCTA 46 29 0 CCGCGCGTCG 0.838447 -272 CTTGCCCGCACAGCCCGGCCCAGGTGCAGG 46 144 0 CAGCCCGGCC 0.953724 -157 CCGGGCTGTGCGGGCAAGGCGTCCATCCAG 46 156 1 CGGGCAAGGC 0.481455 -145 GGCGTCCATCCAGCGCCAGCAACGTCGCAT 46 173 1 CAGCGCCAGC 0.946234 -128 ATCTAATGCCCCGGTGAGCGAAGGGCGCAT 46 201 1 CCGGTGAGCG 0.648235 -100 ATCGAGGTCGCAGCTGGCCGAGCAAGCGCT 46 262 1 CAGCTGGCCG 0.702683 -39 CAGCGGTGCCCCAACGCGAT 47 1 1 CAGCGGTGCC 0.582416 -300 TTAGCTTTATCGGCGCGGCGGATCGCGTTG 47 22 0 CGGCGCGGCG 0.917861 -279 CAACGGAGATCGGCTGGCGTGAGCGACATG 47 81 0 CGGCTGGCGT 0.467271 -220 ATCTCCGTTGCCGGCCACCGTAACCGTCAG 47 101 1 CCGGCCACCG 0.710095 -200 GGCACAATGCCAGCCGCACGCTGCAAGGCC 47 139 1 CAGCCGCACG 0.751474 -162 CGACTTTGCCCAGCTCAACCTCTGCCATGC 47 248 1 CAGCTCAACC 0.794682 -53 GTGAGCCTAACCGCGCGACGATACAGCCGG 47 277 0 CCGCGCGACG 0.934868 -24 CAGCGCAGGCCGGCGCGCCCCCTATTCTGG 48 44 0 CGGCGCGCCC 0.91579 -213 GACGCAGAGTCAGCGCAGGCCGGCGCGCCC 48 54 0 CAGCGCAGGC 0.934522 -203 GCTTCATGTGCAGCGGGTGCTCCTCCTCGG 48 140 1 CAGCGGGTGC 0.787218 -117 TCCTCGGACGCCGCGACGGGGTCTGATCCA 48 163 1 CCGCGACGGG 0.949507 -94 CGCGAACGTCCCGCGACGGGAAGCCGGTCT 48 192 0 CCGCGACGGG 0.949507 -65 AACCTCAGACCGGCGCATCGCGAACGTCCC 48 210 0 CGGCGCATCG 0.94828 -47 ********** Masking position 1 Map Score: 183.691 Number of sites scoring better than the average of aligned sites = 85219 Number in coding regions = 79688 Number in noncoding regions = 5531 Number of orfs with sites within 600 bp upstream = 1574 Fraction of orfs with sites within 600 bp upstream = 0.252811 Motif number 2 GACGACGAATGGCCCGGGGTGCAACGATAGA 1 47 1 GGCCCGGGTG 0.644214 -47 ACTGCCGGCAGGGTCAGGCGGTAGCCTGTCA 2 14 1 GGGTCGGCGG 0.548899 -23 CGTCGGATAGCGCTGGCCAACTCTGGG 3 7 0 CGCTGCCAAC 0.541814 -95 GCCATGGTTGCGCTGCTGATCGTCGGATAGC 3 27 0 CGCTGTGATC 0.760974 -75 CGCACAGCGGCGGTGATCGCGTACGTCCAGA 3 63 0 CGGTGTCGCG 0.482338 -39 CGATCACCGCCGCTGTGCGGCGAGGAGATCC 3 75 1 CGCTGGCGGC 0.958446 -27 ACTACGCTTCGGGGCCGCCGGTTAGGTCTCG 4 12 0 GGGGCGCCGG 0.636846 -77 GGCGCTCATCCTGTGCTCCCTCT 5 30 0 CGCTCTCCTG 0.806255 -13 TCGGCATCGTCGCCGGCGGTCATGGCGTCAC 7 51 0 CGCCGCGGTC 0.81138 -48 CTCATCGCTGCGCTCGGCATCGTCGCCGGCG 7 64 0 CGCTCGCATC 0.960714 -35 ATGCGCCGCTCCTCCTCATCGCTGCGC 7 82 0 CGCTCTCCTC 0.921499 -17 CGGCCCGCTAGGCTATCGACCA 8 2 0 GGCTACGACC 0.530377 -34 CCACACGATACGGAAGGCAGCTGAA 9 5 0 CGGAAGCAGC 0.502055 -137 CGTGTATTGGCGCGCCCGACCCCCACACGAT 9 27 0 CGCGCCGACC 0.894087 -115 GGCCCTCAACGGCCGATCCCCCGAACTGATC 9 108 1 GGCCGTCCCC 0.537432 -34 GGCTTCGCCGCGCTCGCGATCGCTCCATATC 10 13 0 CGCTCCGATC 0.896896 -65 CGACCCGCCACGCCCGGCTTCGCCGCGCTCG 10 28 0 CGCCCGCTTC 0.764706 -50 ATGCCATAAACGCGACCCGCCACGCCCGGCT 10 40 0 CGCGACCGCC 0.561862 -38 AAGCCATTGTGGCCCCGGCGGTAGTGTGAGC 11 13 1 GGCCCGGCGG 0.679194 -55 CGTATTCGGCTCCTCGTCAAAATCATGT 11 50 0 GGCTCTCGTC 0.839263 -18 CGCGCTGGTCAGCTGCCATGACC 12 47 0 CGCTGTCAGC 0.854618 -13 CAACGATTACCGGTCGGCACCCGGAACCGAG 13 11 1 CGGTCGCACC 0.900238 -27 TCGGTTGTCGGACTTGACCTACTGGGTCA 14 9 1 CGGACTGACC 0.450414 -55 TTGACCTACTGGGTCAGGCCGACGAGCACTC 14 24 1 GGGTCGGCCG 0.541409 -40 TCGACCATTAGGGTAGGGGCC 14 53 1 GGGTAGGGCC 0.459755 -11 CTTCCATTTCGGCACTCGATGCCATATTGTG 15 21 1 GGCACCGATG 0.37909 -144 TCTTCAACCAGGGTCTCGGTGACAAGCTCGG 15 126 0 GGGTCCGGTG 0.386928 -39 ACGCCCTAGCGCCGTTGACCTACACTCAGC 16 10 1 CGCCGTGACC 0.674749 -89 CTCAGCCAGTCGGCGTTCCGGCCGAGGCTAG 16 35 1 CGGCGTCCGG 0.359734 -64 TTCCGGCCGAGGCTAGGGACCACTCGTAGCC 16 50 1 GGCTAGGACC 0.656805 -49 CGCAAACCTGCTTTCATCGTT 16 88 0 CGCAACCTGC 0.289121 -11 CTTGCGGATACGGTCTCGATGAGGCAATATC 17 60 0 CGGTCCGATG 0.505573 -142 AGACCGTATCCGCAAGGCCGCTACACCGTCC 17 75 1 CGCAAGCCGC 0.808406 -127 CCTGGTGCATCGGTCAGGACGGTGTAGCGGC 17 91 0 CGGTCGGACG 0.658538 -111 GACGCGACGTGGCCCCTGGTGCATCGGTCAG 17 105 0 GGCCCTGGTG 0.393935 -97 TGGGACTGTCCGCGACGCGACGTGGCCCCTG 17 118 0 CGCGAGCGAC 0.500823 -84 GGTCCCTTTTCGCACGGCGTGTCGAGAGCTT 18 190 1 CGCACGCGTG 0.836708 -111 AGGCCGGCACGGCTCACCGGCGCTAGGCGCG 18 239 1 GGCTCCCGGC 0.908357 -62 CTGCCAGCGACGCTACGCGCGCCTAGCGCCG 18 256 0 CGCTAGCGCG 0.764696 -45 GGCGGTCGAGCCTATCCGGGC 19 1 1 GGCGGCGAGC 0.712437 -156 GGCGACGATGCGCGCCGCAGCGATACCTTGC 19 29 1 CGCGCGCAGC 0.960831 -128 ACCCTAACAGGGCCCCCGGCCAACCTGTTGG 19 64 0 GGCCCCGGCC 0.473505 -93 GGCGCTGACCTCCTGGGGCCGGC 21 3 1 CGCTGCCTCC 0.694454 -195 TCCTGGGGCCGGCAAAGCACCCGGCGTCCCG 21 21 1 GGCAAGCACC 0.580263 -177 GAGTCCGTTTCGCTACGGGACGCCGGGTGCT 21 36 0 CGCTAGGGAC 0.402594 -162 CGAAGCGGCCCGGTCTGCGCCGTCCATTGGA 21 70 0 CGGTCGCGCC 0.914939 -128 TGCCGTTTCTCGCTGACCGCGAGACGTTGAC 22 35 0 CGCTGCCGCG 0.821511 -81 ATTGGCTGCTCGCACAGCAACACCCCCCGGG 22 71 1 CGCACGCAAC 0.582935 -45 TGACCGGCTCCGGTCTCCGTCCCGGGGGGTG 22 91 0 CGGTCCCGTC 0.866589 -25 TGGTTCGACCGGCTCCCCCGCCTAACG 23 7 0 GGCTCCCCGC 0.910176 -206 GCGTGGACAGCGCACCGGCCCAACGGCTTGG 23 35 0 CGCACGGCCC 0.906352 -178 CTGTCCACGCCGCCAGCCACCATCACCGGCA 23 56 1 CGCCACCACC 0.706485 -157 AGACAACGCCGGCTGCCGGTGATGGTGGCTG 23 69 0 GGCTGCGGTG 0.543024 -144 CTCGCAGCATGGGTAAGGCCCAACACCAGAC 23 98 1 GGGTAGGCCC 0.467216 -115 CGCTGACCAAGGCGCCCCCTGTGGGCCCACA 23 148 1 GGCGCCCCTG 0.738132 -65 AACCTCCGATCGCGGTGGATCTGATCGGGCG 24 14 1 CGCGGGGATC 0.892427 -157 GATCTGATCGGGCGGTGCTCCAGGTTACGCG 24 31 1 GGCGGGCTCC 0.603727 -140 TTGAAACTAGCGCACCGGCACCGGACGGACA 24 117 0 CGCACGGCAC 0.538991 -54 GGCGGTGCCGGGCTCCGCGGCGCAA 25 5 0 GGCTCGCGGC 0.943789 -296 GCATCCGCGAGGCACTGCTGGCGGTGCCGGG 25 24 0 GGCACGCTGG 0.302168 -277 AGCAGTGCCTCGCGGATGCCCTGATCGTCGT 25 36 1 CGCGGTGCCC 0.713036 -265 GTCGGTATTGCGGTCGCCGACCTGGACGTTG 25 121 0 CGGTCCCGAC 0.460233 -180 TGGACTTGATCGGTCGTCATCACACAACGGT 25 198 1 CGGTCTCATC 0.737192 -103 CTTTCGGGTGCGCTGAGGAGGTAGTCATAAC 25 273 1 CGCTGGGAGG 0.784081 -28 ACCAGACCGCGGGTAGGCGCGG 26 2 0 GGGTAGCGCG 0.329252 -106 CGGTCTGGTTGGCTGGGCTGCCCGCGGTGGT 26 24 1 GGCTGGCTGC 0.636522 -84 GTGCCGACCCGGCGGTGCCGGCCCTACCGCC 26 65 1 GGCGGGCCGG 0.768081 -43 TCAGCATAGTCGCGACGGCGGTAGGGCCGGC 26 81 0 CGCGAGGCGG 0.650475 -27 CCGGCCACGTCGGTGCCGCTCATTGCGGCGG 27 23 0 CGGTGCGCTC 0.714187 -253 TGGCCGGAGCCGCTCCCGGCGGGATGCTGTC 27 47 1 CGCTCCGGCG 0.815833 -229 CCGTTCTGGCCGGACAGCATCCCGCCGGGAG 27 59 0 CGGACGCATC 0.779292 -217 GATTGTAGTAGGCAGACCGCCCCACCCGTAT 27 99 1 GGCAGCCGCC 0.721702 -177 GGCAACGCGACGCAGTGGCCGCAGCGATCAT 27 128 0 CGCAGGGCCG 0.684952 -148 GTCAGCACCTCGGCACCCGGCATGCTCGCTG 27 162 0 CGGCACCGGC 0.52055 -114 GACCCGCAACCGCAGGTCACGTCAAGCTCTG 27 192 0 CGCAGTCACG 0.475736 -84 CTACTACATCCGGCGACCCGCAACCGCAGGT 27 206 0 CGGCGCCCGC 0.729768 -70 CTCCCTTACTGGCAATTGCTCAGCCTACCGG 27 249 0 GGCAATGCTC 0.26439 -27 GCGGTGCTAGCGGTGGTCTTCACAACACAGC 29 21 0 CGGTGTCTTC 0.284145 -280 CATTGACATGCGCCCATCCGGCGTTGACGGG 29 51 1 CGCCCTCCGG 0.730359 -250 CCGGCGTTGACGGGCGGGCGGGTACAGTCGC 29 68 1 CGGGCGGCGG 0.704768 -233 GGTACAGTCGCGCCATGGACGGCAGGCTTTG 29 88 1 CGCCAGGACG 0.465474 -213 TTTGCACGGGCGCACTGGTGCCCAGGGAGTA 29 115 1 CGCACGGTGC 0.61824 -186 CGTCGTACGGCGCTCTGGCGCAAGTTCGCTG 29 186 0 CGCTCGGCGC 0.957924 -115 CGCCGGATGCGGCTCCCGCCGAGTCACCGAA 29 237 0 GGCTCCGCCG 0.678288 -64 TATTGGCCGTCGCCGACCGCCGGATGCGGCT 29 254 0 CGCCGCCGCC 0.588842 -47 CACCCGAACTCGGTCGGGTTCGCTTGCGCTG 30 19 0 CGGTCGGTTC 0.525597 -33 ACCCTCGCGGATCACCCGAACTCGGT 30 36 0 CGCGGTCACC 0.840155 -16 TCATCTGCGCCGCTCCTCCTCATCGCTTCGC 31 13 1 CGCTCTCCTC 0.921499 -288 CTCATCGCTTCGCTCTGCATCGTCACCGGCG 31 31 1 CGCTCGCATC 0.960714 -270 TCGTCACCGGCGCGACTCATCTGCGCCGCTC 31 50 1 CGCGATCATC 0.661756 -251 TCATCTGCGCCGCTCCTGCTCATCGCTTCGC 31 66 1 CGCTCTGCTC 0.87618 -235 CTCATCGCTTCGCTCTGCATCGTCACCGGCG 31 84 1 CGCTCGCATC 0.960714 -217 TCGTCACCGGCGCGACTCATCTGCGCCGCTC 31 103 1 CGCGATCATC 0.661756 -198 TCATCTGCGCCGCTCCTGCTCATCGCTTCGC 31 119 1 CGCTCTGCTC 0.87618 -182 CTCATCGCTTCGCTCTGCATCGTCACCGGCG 31 137 1 CGCTCGCATC 0.960714 -164 TCGTCACCGGCGCGACTCATCTGCGCCGCTC 31 156 1 CGCGATCATC 0.661756 -145 TCATCTGCGCCGCTCCTGCTCATCGCTTCGC 31 172 1 CGCTCTGCTC 0.87618 -129 CTCATCGCTTCGCTCTGCATCGTCACCGGCG 31 190 1 CGCTCGCATC 0.960714 -111 TCGTCACCGGCGCGACTCATCTGCGCCGCTC 31 209 1 CGCGATCATC 0.661756 -92 TCATCTGCGCCGCTCCTCCTCATCGCTTCGC 31 225 1 CGCTCTCCTC 0.921499 -76 CTCATCGCTTCGCTCTGCATCGTCACCGGCG 31 243 1 CGCTCGCATC 0.960714 -58 TCGTCACCGGCGCGCATGGTCAGCGACGCTA 31 262 1 CGCGCTGGTC 0.860966 -39 CGACCTGCCTCGCCGAGCGCCCCCGACAATC 32 24 1 CGCCGGCGCC 0.572679 -89 CCCGACAATCGGGTCGCCATCTATGAAAGGA 32 45 1 GGGTCCCATC 0.685093 -68 AGCAACATTCGGCCACCCAGCGCTTCCGACA 32 81 1 GGCCACCAGC 0.523481 -32 GCAACCGTGTCGCGGGGGATCTGCGCCC 33 8 0 CGCGGGGATC 0.892427 -251 GCGATGCGTTCGCGATCGGTCCGGACTCTTC 33 37 1 CGCGACGGTC 0.731326 -222 CCGCAACACTGGCGCTTCCTCCATTATGCCC 33 76 0 GGCGCTCCTC 0.826638 -183 GCTTTGGTGCGGCCGGCGATCAACTTCGGCT 33 116 1 GGCCGCGATC 0.591471 -143 TTAGCGTCGGCGCTGGTGGTGCGGCGCTCAC 33 175 0 CGCTGTGGTG 0.605086 -84 CCAGCGCCGACGCTAAGGATGGAACGCACGG 33 190 1 CGCTAGGATG 0.572773 -69 AAGGATGGAACGCACGGCATCTTCTGACGCG 33 204 1 CGCACGCATC 0.914152 -55 CCATTGCCCCCGCGGTGCGTCTAGGGACC 34 9 0 CGCGGGCGTC 0.945591 -74 ACCGCAGAGCCTCCTAGCATTTC 34 70 0 CGCAGGCCTC 0.902197 -13 GAGTCGTGTACGGAGACCGTC 35 1 0 CGGAGCCGTC 0.638459 -115 GTCAGACATGCGGTAGGCACCAGGCGGAGGA 35 92 1 CGGTAGCACC 0.698377 -24 GTAGGCACCAGGCGGAGGAACC 35 104 1 GGCGGGGAAC 0.331149 -12 GCGTACCGGCGGCAAGCCAGCCTCGAC 37 7 0 GGCAACCAGC 0.449286 -90 GCCGCGGTCAGGCGACGGCGCCTCTAGCGTA 37 33 0 GGCGAGGCGC 0.70441 -64 CGGCTTGTCGCGGCCGCGGTCAGGCGACGGC 37 45 0 CGGCCCGGTC 0.695486 -52 AGTTTCGCTGATCCTCACGTGCTCGA 37 81 0 CGCTGTCCTC 0.879931 -16 CGAAGGCTGTGGCTCAGCACCTGCCCAGGTG 38 78 0 GGCTCGCACC 0.925192 -223 CGGCTTACGCCGCCGTCGCCGAAGGCTGTGG 38 97 0 CGCCGCGCCG 0.489131 -204 ACGTAGAGTTGGCCGTTGGGCACGCCGGACT 38 165 1 GGCCGTGGGC 0.561281 -136 CGGTAGGTGCCGCGAGTCCGGCGTGCCCAAC 38 179 0 CGCGATCCGG 0.516981 -122 TGCCCGGTGTCGGCCGGCAGGACCCGAAAGA 38 212 1 CGGCCGCAGG 0.652296 -89 TCCAGCCTGACGGCGCGGATCGAGTGTCCGT 38 245 1 CGGCGGGATC 0.641488 -56 AACTCTGTCACGCGCAGCAACGGACACTCGA 38 264 0 CGCGCGCAAC 0.743159 -37 GACCCGCTCACGCGGTTCCTCGAT 39 4 0 CGCGGTCCTC 0.868251 -104 AGCGTCGCGCCGCTGACCCGCTCACGCGGTT 39 18 0 CGCTGCCCGC 0.932951 -90 CTATCGCAACGGCAGTGCCGC 40 20 1 GGCAGGCCGC 0.823578 -11 AAGCTTAGACGGCGGGGGCTCGGGTGGTACC 42 17 1 GGCGGGGCTC 0.837648 -186 GACGATGACCCGCACCGCAGCGCGGCGCGAT 42 49 0 CGCACGCAGC 0.922194 -154 TTGACTGCTCGGCTCCTCCTCACGCCGCTGC 42 89 1 GGCTCTCCTC 0.842199 -114 CGATGCACGCCGCGCAGCGGCGTGAGGAGGA 42 102 0 CGCGCGCGGC 0.964637 -101 TGGACTGCTCGGCTCCTCCTCACGCCGCTGC 42 147 1 GGCTCTCCTC 0.842199 -56 CGATGCACGCCGCGCAGCGGCGTGAGGAGGA 42 160 0 CGCGCGCGGC 0.964637 -43 AATTCTTGGACGCGCGGCTGGTGTC 43 5 0 CGCGCGCTGG 0.66347 -56 AGAATTGCTCGGGTCGGGCGCTACTGGCCCG 44 25 1 GGGTCGGCGC 0.774388 -48 CGCCTACGAGGGGACTTCGCCGA 44 60 1 GGGACTCGCC 0.452858 -13 AACCGCTCCTCTCCCGTTGCCAGT 45 51 0 CGCTCTCTCC 0.680941 -14 CATATTCTTCCGCGCGTCGTCATAGCCTAAT 46 27 0 CGCGCTCGTC 0.910406 -274 GAAGAATATGCGCAATCCGCCAGAATGCCCA 46 48 1 CGCAACCGCC 0.707381 -253 ACGCCTTGCCCGCACAGCCCGGCCCAGGTGC 46 147 0 CGCACGCCCG 0.847235 -154 GGGCTGTGCGGGCAAGGCGTCCATCCAGCGC 46 158 1 GGCAAGCGTC 0.627723 -143 CGACGTTGCTGGCGCTGGATGGACGCCTTGC 46 169 0 GGCGCGGATG 0.681693 -132 ATGCGCCCTTCGCTCACCGGGGCATTAGATG 46 200 0 CGCTCCCGGG 0.885441 -101 AGCGCTTGCTCGGCCAGCTGCGACCTCGATG 46 261 0 CGGCCGCTGC 0.545352 -40 GCTTTATCGGCGCGGCGGATCGCGTTGGGGC 47 18 0 CGCGGGGATC 0.892427 -283 TGGCCGGCAACGGAGATCGGCTGGCGTGAGC 47 87 0 CGGAGTCGGC 0.535378 -214 CTGACGGTTACGGTGGCCGGCAACGGAGATC 47 100 0 CGGTGCCGGC 0.81864 -201 ACAGTGCAATCGCTGACCAGGATGCAGTCAT 47 215 0 CGCTGCCAGG 0.780454 -86 AGCGCAGGCCGGCGCGCCCCCTATTCTGGAC 48 42 0 GGCGCCCCCC 0.530173 -215 CATGTGCAGCGGGTGCTCCTCCTCGGACGCC 48 144 1 GGGTGTCCTC 0.524906 -113 TGCTCCTCCTCGGACGCCGCGACGGGGTCTG 48 157 1 CGGACCCGCG 0.520067 -100 GACGGGAAGCCGGTCTGGATCAGACCCCGTC 48 177 0 CGGTCGGATC 0.830162 -80 GCGGGACGTTCGCGATGCGCCGGTCTGAGGT 48 208 1 CGCGAGCGCC 0.558104 -49 ***** ***** Masking position 2 Map Score: 189.564 Number of sites scoring better than the average of aligned sites = 90006 Number in coding regions = 83239 Number in noncoding regions = 6767 Number of orfs with sites within 600 bp upstream = 1681 Fraction of orfs with sites within 600 bp upstream = 0.269997 Motif number 3 GGTTGCGCTGCTGATCGTCGGATAGCGCTG 3 23 0 CTGATCGTCG 0.87557 -79 ATCACCGCCGCTGTGCGGCGAGGAGATCCG 3 77 1 CTGTGCGGCG 0.846868 -25 CATCGCTGCGCTCGGCATCGTCGCCGGCGG 7 63 0 CTCGGCATCG 0.958765 -36 TGCGCCGCTCCTCCTCATCGCTGCGCTCGG 7 78 0 CTCCTCATCG 0.968272 -21 ATCCCCCGAACTGATCAACGGAGAAAACA 9 123 1 CTGATCAACG 0.710797 -19 GTCATGGCAGCTGACCAGCGCG 12 48 1 CTGACCAGCG 0.750426 -12 GCCAGCAGGTCTCGACAGCGATCCGTCGAT 15 57 0 CTCGACAGCG 0.799621 -108 TTCTCCGACTCTCATCATCGATTGGACACT 17 25 1 CTCATCATCG 0.952379 -177 GCCGGCAATACTGCTCAACGCCAACCCCAA 18 37 1 CTGCTCAACG 0.7895 -264 GCCGGCACGGCTCACCGGCGCTAGGCGCGC 18 241 1 CTCACCGGCG 0.859859 -60 CGCTGCGGCGCGCATCGTCGCCCGGATAGG 19 21 0 CGCATCGTCG 0.921597 -136 CGACGATGCGCGCCGCAGCGATACCTTGCC 19 31 1 CGCCGCAGCG 0.51895 -126 CGGTGCCGGGCTCCGCGGCGCAA 25 4 0 CTCCGCGGCG 0.866839 -297 CGCGGATGCCCTGATCGTCGTTGATTTCCT 25 46 1 CTGATCGTCG 0.87557 -255 TTATGACTACCTCCTCAGCGCACCCGAAAG 25 273 0 CTCCTCAGCG 0.980061 -28 TCAGCATAGTCGCGACGGCGGTAGGGCCGG 26 82 0 CGCGACGGCG 0.68582 -26 GTTGGCAATACTCACCAGCGAACTTGCGCC 29 171 1 CTCACCAGCG 0.878682 -130 ACTCATCTGCGCCGCTCCTCC 31 2 1 CTCATCTGCG 0.863098 -299 TGCGCCGCTCCTCCTCATCGCTTCGCTCTG 31 18 1 CTCCTCATCG 0.968272 -283 CATCGCTTCGCTCTGCATCGTCACCGGCGC 31 33 1 CTCTGCATCG 0.907122 -268 ACCGGCGCGACTCATCTGCGCCGCTCCTGC 31 55 1 CTCATCTGCG 0.863098 -246 TGCGCCGCTCCTGCTCATCGCTTCGCTCTG 31 71 1 CTGCTCATCG 0.926828 -230 CATCGCTTCGCTCTGCATCGTCACCGGCGC 31 86 1 CTCTGCATCG 0.907122 -215 ACCGGCGCGACTCATCTGCGCCGCTCCTGC 31 108 1 CTCATCTGCG 0.863098 -193 TGCGCCGCTCCTGCTCATCGCTTCGCTCTG 31 124 1 CTGCTCATCG 0.926828 -177 CATCGCTTCGCTCTGCATCGTCACCGGCGC 31 139 1 CTCTGCATCG 0.907122 -162 ACCGGCGCGACTCATCTGCGCCGCTCCTGC 31 161 1 CTCATCTGCG 0.863098 -140 TGCGCCGCTCCTGCTCATCGCTTCGCTCTG 31 177 1 CTGCTCATCG 0.926828 -124 CATCGCTTCGCTCTGCATCGTCACCGGCGC 31 192 1 CTCTGCATCG 0.907122 -109 ACCGGCGCGACTCATCTGCGCCGCTCCTCC 31 214 1 CTCATCTGCG 0.863098 -87 TGCGCCGCTCCTCCTCATCGCTTCGCTCTG 31 230 1 CTCCTCATCG 0.968272 -71 CATCGCTTCGCTCTGCATCGTCACCGGCGC 31 245 1 CTCTGCATCG 0.907122 -56 GTCGCCTGACCGCGGCCGCGACAAGCCGAC 37 48 1 CGCGGCCGCG 0.474557 -49 CTCTGTCACGCGCAGCAACGGACACTCGAT 38 263 0 CGCAGCAACG 0.83698 -38 ACCGCGTGAGCGGGTCAGCGGCGCGACGCT 39 19 1 CGGGTCAGCG 0.890157 -89 CGATGACCCGCACCGCAGCGCGGCGCGATG 42 48 0 CACCGCAGCG 0.698875 -155 CGCTGCGGTGCGGGTCATCGTCAAGCTGTG 42 58 1 CGGGTCATCG 0.833259 -145 ATGCACGCCGCGCAGCGGCGTGAGGAGGAG 42 101 0 CGCAGCGGCG 0.514878 -102 TCCAACACAGCTCGGCGACGATGCACGCCG 42 121 0 CTCGGCGACG 0.853712 -82 ATGCACGCCGCGCAGCGGCGTGAGGAGGAG 42 159 0 CGCAGCGGCG 0.514878 -44 CATAACCTAGCTCGGCGACGATGCACGCCG 42 179 0 CTCGGCGACG 0.853712 -24 GTACCCCCACCGCATCGTCGTCGACACGGG 45 16 0 CGCATCGTCG 0.921597 -49 TTAGCTTTATCGGCGCGGCGGATCGCGTTG 47 22 0 CGGCGCGGCG 0.750107 -279 CAACGAACGACGCCACATCGCACATGTCGC 47 59 1 CGCCACATCG 0.750601 -242 TGACTGCATCCTGGTCAGCGATTGCACTGT 47 216 1 CTGGTCAGCG 0.921041 -85 GCAGCGGGTGCTCCTCCTCGGACGCCGCGA 48 149 1 CTCCTCCTCG 0.799719 -108 CCTCCTCGGACGCCGCGACGGGGTCTGATC 48 161 1 CGCCGCGACG 0.747006 -96 AACCTCAGACCGGCGCATCGCGAACGTCCC 48 210 0 CGGCGCATCG 0.921599 -47 ********** Masking position 6 Map Score: 101.182 Number of sites scoring better than the average of aligned sites = 7941 Number in coding regions = 7352 Number in noncoding regions = 589 Number of orfs with sites within 600 bp upstream = 392 Fraction of orfs with sites within 600 bp upstream = 0.0629618 Motif number 4 GACGACGAATGGCCCGGGGTGCAACGATAGA 1 47 1 GGCCCGGGGG 0.597538 -47 ACGACTGCCGGCAGGGTCAGGCGGTAG 2 7 1 GCCGGCAGGT 0.922866 -30 CCGCCGCTGTGCGGCGAGGAGATCCGAAACG 3 81 1 GCGGCGAGGG 0.457546 -21 CACCGGCATCACGAGAACCAGAGGG 5 5 1 GGCATCACGG 0.307633 -38 TGGGTAGGGTGACGCCATGACCGCCGGCGAC 7 43 1 GACGCCATGC 0.518237 -56 TAGCCTAGCGGGCCGTAGGGTGTGCCAG 8 18 1 GGCCGTAGGT 0.37237 -18 GGCGAAGCCGGGCGTGGCGGGTCGCGTTTAT 10 35 1 GGCGTGGCGG 0.413769 -43 ATTGCCTTTCGCCAGCAGGTCTCGACAGCGA 15 66 0 GCCAGCAGGC 0.761933 -99 GTAGGTCAACGGCGCTAGGGCGT 16 3 0 GGCGCTAGGC 0.890304 -96 CCTAGCCTCGGCCGGAACGCCGACTGGCTGA 16 36 0 GCCGGAACGC 0.34154 -63 GACTGTCCGCGACGCGACGTGGCCCCTGGTG 17 115 0 GACGCGACGG 0.812132 -87 ATCGGATGGTCGCGGCAGGAGGCAAGCCAGT 17 170 0 CGCGGCAGGG 0.674433 -32 ACGCCGGCCGGTCCTTCTCACCT 18 3 1 GCCGGCCGGC 0.817272 -298 CAGTATTGCCGGCACTAGGTGAGAAGGACCG 18 19 0 GGCACTAGGG 0.72854 -282 ACCCCAAGAGGACGGCAGACGCAAAGTGAGC 18 60 1 GACGGCAGAG 0.267469 -241 AAGTGAGCCAGACACCAGGTGATCCGGAACA 18 83 1 GACACCAGGG 0.66312 -218 CGGTGTGACAGACGCCGTGTCGCGGTGGTTT 18 113 0 GACGCCGTGC 0.231304 -188 TGTTGTGTGTGCCGCGAGGTGGGTGTGTCGG 18 141 0 GCCGCGAGGG 0.972922 -160 TGGGCGATAGGCCGGCACGGCTCACCGGCGC 18 231 1 GCCGGCACGC 0.766385 -70 ACGGCTCACCGGCGCTAGGCGCGCGTAGCGT 18 247 1 GGCGCTAGGG 0.954846 -54 CTCTGCCAGCGACGCTACGCGCGCCTAGCGC 18 258 0 GACGCTACGG 0.657477 -43 CCAACAGGTTGGCCGGGGGCCCTGTTAGGGT 19 64 1 GGCCGGGGGC 0.365789 -93 CTGTTAGGGTGCCGGTACGGGACCTAGTCTT 19 85 1 GCCGGTACGG 0.890125 -72 GTGCTTTGCCGGCCCCAGGAGGTCAGCGCC 21 10 0 GGCCCCAGGG 0.861115 -188 TTCGCTACGGGACGCCGGGTGCTTTGCCGGC 21 28 0 GACGCCGGGG 0.821558 -170 CACCATCACCGGCAGCCGGCGTTGTCTCGCA 23 73 1 GGCAGCCGGG 0.737621 -140 CAACGAGGTAGCCAGCATGTGACGGGCGTGG 25 170 1 GCCAGCATGG 0.596051 -131 TAGTCGCGACGGCGGTAGGGCCGGCACCGCC 26 75 0 GGCGGTAGGC 0.922308 -33 GAATCACACCGCCGCAATGAGCGGCACCGAC 27 15 1 GCCGCAATGG 0.346291 -261 AGCCGCTCCCGGCGGGATGCTGTCCGGCCAG 27 54 1 GGCGGGATGT 0.696353 -222 CGTCTTGTCGGCCGGTAGGCTGAGCAATTGC 27 238 1 GCCGGTAGGT 0.810569 -38 GGCGTTGACGGGCGGGCGGGTACAGTCGCGC 29 70 1 GGCGGGCGGT 0.766223 -231 TCGCGCCATGGACGGCAGGCTTTGCACGGGC 29 95 1 GACGGCAGGT 0.806405 -206 TCGGTGACTCGGCGGGAGCCGCATCCGGCGG 29 238 1 GGCGGGAGCG 0.626936 -63 AGCCGCATCCGGCGGTCGGCGACGGCCAATA 29 254 1 GGCGGTCGGG 0.888354 -47 GATTGTCGGGGGCGCTCGGCGAGGCAGGTCG 32 24 0 GGCGCTCGGG 0.844252 -89 CGGTTTCCCAGGCGGGATGTGCTGTGAGCGC 33 152 1 GGCGGGATGG 0.926024 -107 ACATGCGGTAGGCACCAGGCGGAGGAACC 35 97 1 GGCACCAGGG 0.882505 -19 CTGGCTTGCCGCCGGTACGCTAGAGGCGCCG 37 18 1 GCCGGTACGT 0.597811 -79 ACACCGGGCAAGCGGTAGGTGCCGCGAGTCC 38 191 0 AGCGGTAGGG 0.3323 -110 CCCGGTGTCGGCCGGCAGGACCCGAAAGACA 38 214 1 GCCGGCAGGC 0.962292 -87 CTCGATCCGCGCCGTCAGGCTGGATGTCTTT 38 238 0 GCCGTCAGGT 0.580119 -63 GCGGGTCAGCGGCGCGACGCTTAAACTTCCC 39 28 1 GGCGCGACGT 0.749358 -80 GAATCAGCCCGACAGGAGGCGCA 39 95 1 GACAGGAGGG 0.700871 -13 GGAAAGCTTAGACGGCGGGGGCTCGGGTGGT 42 14 1 GACGGCGGGG 0.86927 -189 ACCGCAGCGCGGCGCGATGGGTACCACCCGA 42 36 0 GGCGCGATGG 0.894498 -167 GCCGCGCAGCGGCGTGAGGAGGAGCCGAGCA 42 94 0 GGCGTGAGGG 0.891082 -109 GCCGCGCAGCGGCGTGAGGAGGAGCCGAGCA 42 152 0 GGCGTGAGGG 0.891082 -51 CTGCACCTGGGCCGGGCTGTGCGGGCAAGGC 46 145 1 GCCGGGCTGG 0.70655 -156 CGACGATACAGCCGGCATGGCAGAGGTTGAG 47 261 0 GCCGGCATGC 0.798836 -40 GTCAGCGCAGGCCGGCGCGCCCCCTATTCTG 48 45 0 GCCGGCGCGC 0.482191 -212 CTCCTCGGACGCCGCGACGGGGTCTGATCCA 48 162 1 GCCGCGACGG 0.919886 -95 ********* * Masking position 3 Map Score: 71.3934 Number of sites scoring better than the average of aligned sites = 14425 Number in coding regions = 13234 Number in noncoding regions = 1191 Number of orfs with sites within 600 bp upstream = 796 Fraction of orfs with sites within 600 bp upstream = 0.127851 Motif number 5 CTGGACGTACGCGATCACCGCCGCTGTGCGGCGAG 3 64 1 GCGATCCCCT 0.393277 -38 CGTTTCGGATCTCCTCGCCGCACAGCGGCG 3 82 0 CGGATCCCCG 0.514476 -20 CTTGGGTAGGGTGACGCCATGACCGCCGGCGACGA 7 41 1 GTGACGCACG 0.314812 -58 GGGATATGGAGCGATCGCGAGCGCGGCGAAGCCGG 10 11 1 GCGATCCGCG 0.596819 -67 GTCGTAGACCGTGATCCCCCTTCCGCGGTCATGGC 12 21 1 GTGATCCCCG 0.913275 -39 ACGGATCGCTGTCGAGACCTGCTGGCGAAAGGCAA 15 61 1 GTCGAGCCGG 0.387284 -104 CTGAGTGTAGGTCAACGGCGCTAGGGCGT 16 5 0 GTCAACGCGG 0.672155 -94 TAGCCTCGGCCGGAACGCCGACTGGCTGAGTGTAG 16 30 0 CGGAACCCGG 0.634098 -69 ACTGCTCAACGCCAACCCCAAGAGGACGGCAGACG 18 46 1 GCCAACCCGG 0.981572 -255 GACTCAGGAAGCGATCTCCGTCGCGAAACAGGGCA 21 100 1 GCGATCCCCG 0.944486 -98 GGCACCACAGTCAGGGCCATGCGAT 21 183 0 GGCACCCAGG 0.926992 -15 CACACCGAGCGTCAACGTCTCGCGGTCAGCGAGAA 22 25 1 GTCAACTCGG 0.569975 -91 CTGCTCGCACAGCAACACCCCCCGGGACGGAGACC 22 76 1 AGCAACCCGG 0.548601 -40 CGCTGACCAAGGCGCCCCCTGTGGGCCCACAGTGG 23 148 1 GGCGCCCCGG 0.87181 -65 GCTACTTATGGGCAACGCCAGACCGCCCACTGTGG 23 174 0 GGCAACCCCG 0.978598 -39 GTCAACCTCCGATCGCGGTGGATCT 24 1 1 GTCAACTCCG 0.532228 -170 TCAACCCGAAGCCAAGTCCGTAAGGAGCAGAACCG 24 144 1 GCCAAGCCGG 0.87395 -27 CGCGGAGCCCGGCACCGCCAGCAGTGCCTCGCGGA 25 17 1 GGCACCCCGT 0.637225 -284 GTCCAGGTCGGCGACCGCAATACCGACGTGATCGA 25 125 1 GCGACCCACG 0.850906 -176 TTGATCGGTCGTCATCACACAACGGTAACCTGAAG 25 203 1 GTCATCCAGG 0.865719 -98 CGGCACACCGGTCAACACCACCGCGGGCAGCCCAG 26 36 0 GTCAACCCCG 0.965847 -72 CGGTAGGGCCGGCACCGCCGGGTCGGCACACCGGT 26 59 0 GGCACCCCCG 0.975374 -49 TTCGGAATCACACCGCCGCAATGAGCGG 27 4 1 GGAATCCACG 0.221921 -272 CCGCCCGCCCGTCAACGCCGGATGGGCGCATGTCA 29 54 0 GTCAACCCGG 0.97054 -247 GGTGAGTATTGCCAACTCCGGCAGGATTTCAAAGC 29 152 0 GCCAACCCGG 0.981572 -149 TCCTCAGCTCGCGATCACAACGCGGTTACGCGTCA 33 228 0 GCGATCCAGG 0.84516 -31 GCGTACCGGCGGCAAGCCAGCCTCGAC 37 3 0 GGCAAGCACG 0.620903 -94 CGCTAGAGGCGCCGTCGCCTGACCGCGGCCGCGAC 37 35 1 GCCGTCCCCG 0.82738 -62 CCCCAAGTCGGTGAACCCAATGCGGATTG 38 5 0 GTGAACCAGG 0.825996 -296 CGGTAATATCGTGATCCCCAAGTCGGTGAACCCAA 38 20 0 GTGATCCCCG 0.913275 -281 TTGATTAGGTGGCATATCCAACTCGGTAATATCGT 38 43 0 GGCATACCCG 0.588511 -258 GTGCCCAACGGCCAACTCTACGTGGTGACCAAAGT 38 153 0 GCCAACCTGG 0.629328 -148 GCGGCACTGCCGTTGCGATAGTCTCCG 40 14 0 GGCACTCCCG 0.496513 -17 AGCCGAGCAGTCCAACACAGCTCGGCGACGATGCA 42 126 0 TCCAACCAGG 0.250623 -77 TCCGCGCGTCGTCATAGCCTAATCGGACTACGCGG 46 15 0 GTCATACCCG 0.469369 -286 TCGGCCAGCTGCGACCTCGATGGGGTGGGAATCCG 46 248 0 GCGACCCGGG 0.677465 -53 TACGGTGGCCGGCAACGGAGATCGGCTGGCGTGAG 47 88 0 GGCAACGAGG 0.47451 -213 TGGACGCAGAGTCAGCGCAGGCCGGCGCGCCCCCT 48 51 0 GTCAGCCAGG 0.504179 -206 CGTTGACTCTGCGTCCACCGTGTGGGCTACTCGCA 48 97 0 GCGTCCCCGG 0.472666 -160 ****** ** ** Masking position 15 Map Score: 32.769 Number of sites scoring better than the average of aligned sites = 12493 Number in coding regions = 11724 Number in noncoding regions = 769 Number of orfs with sites within 600 bp upstream = 540 Fraction of orfs with sites within 600 bp upstream = 0.0867331 Motif number 6 TTGTCGAGGTAGTCCCGCCAGATCCCGAGGA 1 16 0 AGTCCCGCCG 0.941134 -78 CGTGACAGGCTACCGCCTGACCCTGCCGG 2 18 0 GCTACCGCCG 0.935989 -19 ACTACGCTTCGGGGCCGCCGGTTAGGTCTCG 4 12 0 GGGGCCGCCG 0.799286 -77 GGGTGACGCCATGACCGCCGGCGACGATGCC 7 49 1 ATGACCGCCG 0.591381 -50 AAACGCGACCCGCCACGCCCGGCTTCGCCGC 10 33 0 CGCCACGCCG 0.978393 -45 TACAGCTCACACTACCGCCGGGGCCACAATG 11 17 0 ACTACCGCCG 0.820676 -51 TAGCCTCGGCCGGAACGCCGACTGGCTGAGT 16 34 0 CGGAACGCCA 0.422916 -65 GGCAATACTGCTCAACGCCAACCCCAAGAGG 18 40 1 CTCAACGCCA 0.277534 -261 GCTACGCGCGCCTAGCGCCGGTGAGCCGTGC 18 245 0 CCTAGCGCCG 0.796654 -56 CCGGTGCGCTGTCCACGCCGCCAGCCACCAT 23 48 1 GTCCACGCCC 0.245314 -165 CATGCTGCGAGACAACGCCGGCTGCCGGTGA 23 78 0 GACAACGCCG 0.774266 -135 ATGGGTAAGGCCCAACACCAGACACAAGCTG 23 106 1 CCCAACACCG 0.60961 -107 GCTACTTATGGGCAACGCCAGACCGCCCACT 23 178 0 GGCAACGCCG 0.977059 -35 CGTAACCTGGAGCACCGCCCGATCAGATCCA 24 29 0 AGCACCGCCG 0.95997 -142 CGCGGAGCCCGGCACCGCCAGCAGTGCCTCG 25 17 1 GGCACCGCCG 0.987117 -284 GACCGATCAAGTCCACGCCCGTCACATGCTG 25 182 0 GTCCACGCCG 0.914566 -119 ACCGCCGGGTCGGCACACCGGTCAACACCAC 26 50 0 CGGCACACCG 0.649246 -58 CGGTAGGGCCGGCACCGCCGGGTCGGCACAC 26 63 0 GGCACCGCCG 0.987117 -45 GAGCGGCTCCGGCCACGTCGGTGCCGCTCAT 27 31 0 GGCCACGTCG 0.533887 -245 GGCCGGACAGCATCCCGCCGGGAGCGGCTCC 27 52 0 CATCCCGCCG 0.755811 -224 GTAGGCAGACCGCCCCACCCGTATGATCGCT 27 106 1 CGCCCCACCG 0.907531 -170 CCGCCCGCCCGTCAACGCCGGATGGGCGCAT 29 58 0 GTCAACGCCG 0.883382 -243 TGGCGCGACTGTACCCGCCCGCCCGTCAACG 29 72 0 GTACCCGCCG 0.421882 -229 GGTGAGTATTGCCAACTCCGGCAGGATTTCA 29 156 0 GCCAACTCCG 0.271111 -145 GCCGGATGCGGCTCCCGCCGAGTCACCGAAG 29 236 0 GCTCCCGCCA 0.582094 -65 TTGGCCGTCGCCGACCGCCGGATGCGGCTCC 29 252 0 CCGACCGCCG 0.887712 -49 GGCGCAGATGAGTCGCGCCGGTGACGATGCA 31 46 0 AGTCGCGCCG 0.850602 -255 GGCGCAGATGAGTCGCGCCGGTGACGATGCA 31 99 0 AGTCGCGCCG 0.850602 -202 GGCGCAGATGAGTCGCGCCGGTGACGATGCA 31 152 0 AGTCGCGCCG 0.850602 -149 GGCGCAGATGAGTCGCGCCGGTGACGATGCA 31 205 0 AGTCGCGCCG 0.850602 -96 GCTCACAGCACATCCCGCCTGGGAAACCGCT 33 150 0 CATCCCGCCG 0.755811 -109 CTGTGAGCGCCGCACCACCAGCGCCGACGCT 33 173 1 CGCACCACCG 0.874132 -86 GGTCCCTAGACGCACCGCGGGGGCAATGGTA 34 11 1 CGCACCGCGG 0.608207 -72 GCGCCTCTAGCGTACCGGCGGCAAGCCAGCC 37 16 0 CGTACCGGCG 0.585345 -81 ATGCCACCTAATCAACACCTGGGCAGGTGCT 38 63 1 ATCAACACCG 0.222162 -238 GTTGGCCGTTGGGCACGCCGGACTCGCGGCA 38 172 1 GGGCACGCCG 0.953319 -129 GGTCCTGCCGGCCGACACCGGGCAAGCGGTA 38 205 0 GCCGACACCG 0.241365 -96 CGGAGACTATCGCAACGGCAGTGCCGC 40 14 1 CGCAACGGCG 0.624519 -17 TACCACCCGAGCCCCCGCCGTCTAAGCTTTC 42 15 0 GCCCCCGCCT 0.472968 -188 CGGCGCGATGGGTACCACCCGAGCCCCCGCC 42 27 0 GGTACCACCG 0.813248 -176 TGACCGGGCCAGTAGCGCCCGACCCGAGCAA 44 29 0 AGTAGCGCCG 0.801147 -44 CTACTGGCCCGGTCACGCCTACGAGGGGACT 44 45 1 GGTCACGCCA 0.656814 -28 ACGCCTTGCCCGCACAGCCCGGCCCAGGTGC 46 147 0 CGCACAGCCG 0.511576 -154 CGCACATGTCGCTCACGCCAGCCGATCTCCG 47 77 1 GCTCACGCCG 0.91991 -224 CCAGAATAGGGGGCGCGCCGGCCTGCGCTGA 48 44 1 GGGCGCGCCG 0.928999 -213 ********* * Masking position 6 Map Score: 60.6479 Number of sites scoring better than the average of aligned sites = 17963 Number in coding regions = 16823 Number in noncoding regions = 1140 Number of orfs with sites within 600 bp upstream = 779 Fraction of orfs with sites within 600 bp upstream = 0.12512 Motif number 7 CGGGACTACCTCGACAAGACGACGAATGGC 1 30 1 TCGACAAGAC 0.209312 -64 CCAGCGCTATCCGACGATCAGCAGCGCAAC 3 22 1 CCGACGATCA 0.508473 -80 ATGACCGCCGGCGACGATGCCGAGCGCAGC 7 59 1 GCGACGATGC 0.82516 -40 TGCCATAAACGCGACCCGCCACGCCCGGCT 10 40 0 GCGACCCGCC 0.967245 -38 CTGGGTCAGGCCGACGAGCACTCGACCATT 14 32 1 CCGACGAGCA 0.828324 -32 GGGACTGTCCGCGACGCGACGTGGCCCCTG 17 118 0 GCGACGCGAC 0.977909 -84 GCCTCCTGCCGCGACCATCCGATAGCTTGG 17 178 1 GCGACCATCC 0.743493 -24 ACAAACCACCGCGACACGGCGTCTGTCACA 18 111 1 GCGACACGGC 0.917863 -190 GTCTGTCACACCGACACACCCACCTCGCGG 18 131 1 CCGACACACC 0.242454 -170 ACACACAACACCGACACTGAGACATAAAGG 18 162 1 CCGACACTGA 0.26031 -139 GCAAAAGCTCTCGACACGCCGTGCGAAAAG 18 195 0 TCGACACGCC 0.483801 -106 GGGCGATAGGCCGGCACGGCTCACCGGCGC 18 232 1 CCGGCACGGC 0.74217 -69 GACTCTGCCAGCGACGCTACGCGCGCCTAG 18 261 0 GCGACGCTAC 0.90468 -40 GCCTATCCGGGCGACGATGCGCGCCGCAGC 19 20 1 GCGACGATGC 0.82516 -137 GCGATGAGGCTATATAGGCT 20 17 0 GCGATGAGGC 0.673941 -10 CTTGGGATCGGCGACGCTACCAACCAACCG 21 147 0 GCGACGCTAC 0.90468 -51 GTGTTGCTGTGCGAGCAGCCAATGCCAATG 22 64 0 GCGAGCAGCC 0.280871 -52 GCCGATCTGACCGACCCGGAGAAGCAGATT 25 244 0 CCGACCCGGA 0.744025 -57 GACCGGTGTGCCGACCCGGCGGTGCCGGCC 26 58 1 CCGACCCGGC 0.943332 -50 GGCCCTACCGCCGTCGCGACTATGCTGAGT 26 84 1 CCGTCGCGAC 0.762884 -24 ATGAGCGGCACCGACGTGGCCGGAGCCGCT 27 31 1 CCGACGTGGC 0.5443 -245 TCGCTGGCTGGCAACGCGACGCAGTGGCCG 27 138 0 GCAACGCGAC 0.429604 -138 ACTACATCCGGCGACCCGCAACCGCAGGTC 27 205 0 GCGACCCGCA 0.837558 -71 AGCCTACCGGCCGACAAGACGACTACTACA 27 229 0 CCGACAAGAC 0.798469 -47 TGCATCGTCACCGGCGCGACTCATCTGCGC 31 46 1 CCGGCGCGAC 0.919372 -255 GCAGAGCGAAGCGATGAGCAGGAGCGGCGC 31 72 0 GCGATGAGCA 0.350032 -229 TGCATCGTCACCGGCGCGACTCATCTGCGC 31 99 1 CCGGCGCGAC 0.919372 -202 GCAGAGCGAAGCGATGAGCAGGAGCGGCGC 31 125 0 GCGATGAGCA 0.350032 -176 TGCATCGTCACCGGCGCGACTCATCTGCGC 31 152 1 CCGGCGCGAC 0.919372 -149 GCAGAGCGAAGCGATGAGCAGGAGCGGCGC 31 178 0 GCGATGAGCA 0.350032 -123 TGCATCGTCACCGGCGCGACTCATCTGCGC 31 205 1 CCGGCGCGAC 0.919372 -96 CGCATGGTCAGCGACGCTACACCGTAGGTT 31 274 1 GCGACGCTAC 0.90468 -27 TTCATAGATGGCGACCCGATTGTCGGGGGC 32 42 0 GCGACCCGAT 0.287841 -71 ACCACCAGCGCCGACGCTAAGGATGGAACG 33 186 1 CCGACGCTAA 0.582296 -73 TAGCGTACCGGCGGCAAGCCAGCCTCGAC 37 10 0 GCGGCAAGCC 0.700394 -87 GACCGCGGCCGCGACAAGCCGACAAATCGA 37 55 1 GCGACAAGCC 0.884182 -42 GTGTTGAATGCCGACCAGCACTATTCGCGG 38 125 0 CCGACCAGCA 0.665069 -176 GGAAGTTTAAGCGTCGCGCCGCTGACCCGC 39 28 0 GCGTCGCGCC 0.861099 -80 TAAACTTCCCCCGACAAGACTTGTAAGAAA 39 49 1 CCGACAAGAC 0.798469 -59 ACACAGCTCGGCGACGATGCACGCCGCGCA 42 117 0 GCGACGATGC 0.82516 -86 ACCTAGCTCGGCGACGATGCACGCCGCGCA 42 175 0 GCGACGATGC 0.82516 -28 CCAGTAGCGCCCGACCCGAGCAATTCTATA 44 22 0 CCGACCCGAG 0.335071 -51 CCGACCAGACTATCAACCAA 46 291 0 CCGACCAGAC 0.875251 -10 GTGCCCCAACGCGATCCGCCGCGCCGATAA 47 16 1 GCGATCCGCC 0.734929 -285 GCCTAACCGCGCGACGATACAGCCGGCATG 47 273 0 GCGACGATAC 0.812914 -28 TCAGCGCAGGCCGGCGCGCCCCCTATTCTG 48 45 0 CCGGCGCGCC 0.948672 -212 GGATCAGACCCCGTCGCGGCGTCCGAGGAG 48 162 0 CCGTCGCGGC 0.777517 -95 CGGGACGTTCGCGATGCGCCGGTCTGAGGT 48 209 1 GCGATGCGCC 0.87075 -48 ********** Masking position 2 Map Score: 83.2382 Number of sites scoring better than the average of aligned sites = 13221 Number in coding regions = 12115 Number in noncoding regions = 1106 Number of orfs with sites within 600 bp upstream = 710 Fraction of orfs with sites within 600 bp upstream = 0.114038 Motif number 8 TTTTCTATTGCTGGTTCAACCGGGTGACTAGGATCG 6 57 1 CGTCAACGGG 0.627475 -38 GGGATATGGAGCGATCGCGAGCGCGGCGAAG 10 6 1 AGGCGACGGG 0.901824 -72 CTGGTTGAAGAGGTGTCCATCGACGGAAT 15 146 1 AGTCCACGCG 0.882011 -19 TCTGCTAAACATGCAGCTAACATGGGACTGTCCGCG 17 135 0 AGGCTACAGG 0.450705 -67 GGCTTGCCTCCTGCCGCGACCATCCGATAGCTTGGA 17 173 1 CGGCGACACG 0.834035 -29 GCGTCGCTGGCAGAGTCCGACGAAAGGATCTTTGAT 18 274 1 CGTCCGCGAG 0.903311 -27 GGGCCCTGTTAGGGTGCCGGTACGGGACCTAGTCTT 19 80 1 AGGCCGTAGG 0.775249 -77 TGACCGGCTCCGGTCTCCGTCCCGGGGGGTGTTGCT 22 86 0 CGTCCGCCGG 0.907225 -30 TCCACGCCGCCAGCCACCATCACCGGCAGCCGGCGT 23 59 1 CGACCACACG 0.746071 -154 AGATGTCCGTCCGGTGCCGGTGCGCTAGTTTCAACC 24 114 1 CGGCCGTGGT 0.421659 -57 GCCGCGGAGCCCGGCACCGCCAGCAGTGCCTCGCGG 25 15 1 CGACCGCACG 0.678577 -286 GCCGACCTGGACGTTGCCATCGAGTGGTATCACGAC 25 101 0 AGGCCACGGG 0.977174 -200 GTTACCAACGAGGTAGCCAGCATGTGACGGGCGTGG 25 165 1 AGGCCACAGG 0.961114 -136 CTTTCCCTTCAGGTTACCGTTGTGTGATGACGACCG 25 208 0 AGACCGTGGG 0.429379 -93 TCCGGCCAGAACGGATCCAACGGGATTGTAGTAGGC 27 76 1 AGTCCACGGT 0.491803 -200 GACGCAGTGGCCGCAGCGATCATACGGGTGGGGCGG 27 115 0 CGGCGACAAG 0.649982 -161 GCTGCACAAAACGACGCCGTCGTACGGCGCTCTGGC 29 198 0 AGGCCGCGAG 0.887331 -103 TCGGCGGGAGCCGCATCCGGCGGTCGGCGACGGCCA 29 246 1 CGTCCGCGTG 0.739475 -55 CGATTAACCGAAGTGTCCAGCATGAGTCGTGTACGG 35 19 0 AGTCCACAGG 0.920127 -97 GTCAGACATGCGGTAGGCACCAGGCGGAGGAACC 35 92 1 CGGGCACAGG 0.712506 -24 CGGCTTGTCGCGGCCGCGGTCAGGCGACGGCGCCTC 37 40 0 CGGCGGCAGG 0.947461 -57 GCTTACGCCGCCGTCGCCGAAGGCTGTGGCTCAGCA 38 90 0 CGGCCGAGCG 0.562988 -211 ACCGCTTGCCCGGTGTCGGCCGGCAGGACCCGAAAG 38 206 1 CGTCGGCGCG 0.844999 -95 AGAATTCATCAAGGATCCGGCAAGGGTGCGGGCTGA 43 30 1 AGTCCGCAGG 0.939049 -31 CGCTCCTCTCCCGTTGCCAGTGAGTGGTACCCCCAC 45 36 0 CGGCCATGGG 0.91875 -29 TGTGCGGGCAAGGCGTCCATCCAGCGCCAGCAACGT 46 162 1 AGTCCACCGG 0.74204 -139 ATAAAGCTAACCGGTGCCAACGAACGACGCCACATC 47 42 1 CGGCCACGAG 0.937424 -259 CTGACGGTTACGGTGGCCGGCAACGGAGATCGGCTG 47 95 0 CGGCCGCACG 0.520276 -206 TGCGCTGACTCTGCGTCCACCACGGGAATGTGCGAG 48 67 1 CGTCCACAGG 0.966996 -190 CACGTTGACTCTGCGTCCACCGTGTGGGCTACTCGC 48 98 0 CGTCCACGGG 0.980673 -159 TGCTCCTCCTCGGACGCCGCGACGGGGTCTGATCCA 48 157 1 CGGCCGGAGG 0.798783 -100 * * **** ** * * Masking position 3 Map Score: 41.3518 Number of sites scoring better than the average of aligned sites = 11454 Number in coding regions = 10759 Number in noncoding regions = 695 Number of orfs with sites within 600 bp upstream = 508 Fraction of orfs with sites within 600 bp upstream = 0.0815933 Motif number 9 GGACTACCTCGACAAGACGACGAATGGCCCG 1 32 1 GCAAGACGAC 0.961561 -62 CTGGACGTACGCGATCACCGCCGCTGTGCGG 3 64 1 GGATCACCGC 0.682953 -38 CACCGGCATCACGAGAACCAGAGGG 5 5 1 GCATCACGAG 0.678597 -38 GTAGGGTGACGCCATGACCGCCGGCGACGAT 7 46 1 GCATGACCGC 0.82054 -53 CTGGTCAGCTGCCATGACCGCGGAAGGGGGA 12 35 0 GCATGACCGC 0.82054 -25 GACCTACTGGGTCAGGCCGACGAGCACTCGA 14 26 1 GCAGGCCGAC 0.855409 -38 GCCATCGAGTGGTATCACGACCACCTTGGCA 25 91 0 GTATCACGAC 0.785159 -210 TTACCGTTGTGTGATGACGACCGATCAAGTC 25 200 0 GGATGACGAC 0.939608 -101 TGAGGAGGTAGTCATAACGACATCG 25 286 1 GCATAACGAC 0.7284 -15 GGGCAGCCCAGCCAACCAGACCGCGGGTAGG 26 16 0 GCAACCAGAC 0.354936 -92 CGGCACACCGGTCAACACCACCGCGGGCAGC 26 40 0 GCAACACCAC 0.895221 -68 CTCGCTGGCTGGCAACGCGACGCAGTGGCCG 27 138 0 GCAACGCGAC 0.760338 -138 CCTACCGGCCGACAAGACGACTACTACATCC 27 226 0 GCAAGACGAC 0.961561 -50 CGGCTGTGTTGTGAAGACCACCGCTAGCACC 29 19 1 GGAAGACCAC 0.800438 -282 AACAGCGCAAGCGAACCCGACCGAGTTCGGG 30 17 1 GGAACCCGAC 0.866546 -35 TCCTCAGCTCGCGATCACAACGCGGTTACGC 33 232 0 GGATCACAAC 0.457841 -27 CCGCGGCCGCGACAAGCCGACAAATCGAGCA 37 57 1 GCAAGCCGAC 0.932599 -40 CACCGACTTGGGGATCACGATATTACCGAGT 38 27 1 GGATCACGAT 0.400672 -274 GTCCGATTAGGCTATGACGACGCGCGGAAGA 46 22 1 GTATGACGAC 0.785086 -279 CACCGTAACCGTCAGCACGACTCGGCACAAT 47 116 1 GCAGCACGAC 0.912596 -185 CTCAACCTCTGCCATGCCGGCTGTATCGTCG 47 261 1 GCATGCCGGC 0.880967 -40 * ********* Masking position 4 Map Score: 19.5528 Number of sites scoring better than the average of aligned sites = 2563 Number in coding regions = 2388 Number in noncoding regions = 175 Number of orfs with sites within 600 bp upstream = 158 Fraction of orfs with sites within 600 bp upstream = 0.0253774 Motif number 10 CGATCCTAGTCACCCGGTTGAACCAGCAATA 6 62 0 CACCGGTTGA 0.771171 -33 CTCGTTTCGCGTTCGGCTTGGGTAGGGTGAC 7 25 1 GTCGGCTTGG 0.916779 -74 TCCGTATCGTGTGGGGGTCGGGCGCGCCAAT 9 22 1 GTGGGGTCGG 0.777552 -120 CTGCCGTCCTCTTGGGGTTGGCGTTGAGCAG 18 47 0 CTGGGGTTGG 0.965089 -254 CTTGCCCAACCAACAGGTTGGCCGGGGGCCC 19 55 1 CACAGGTTGG 0.750627 -102 CAGTGCTAACCTACCGGTTGGTTGGTAGCGT 21 133 1 CTCCGGTTGG 0.93092 -65 CGCACCGGCCCAACGGCTTGGTTCGACCGGC 23 25 0 CACGGCTTGG 0.970472 -188 AGTCGTAGCTGTGGGGGTTGGACCCCAGATG 24 88 1 GTGGGGTTGG 0.941021 -83 ACGGACTTGGCTTCGGGTTGAAACTAGCGCA 24 134 0 CTCGGGTTGA 0.827661 -37 GCCAGCATGTGACGGGCGTGGACTTGATCGG 25 180 1 GAGGGCGTGG 0.818436 -121 GAATCTGCTTCTCCGGGTCGGTCAGATCGGC 25 243 1 CTCGGGTCGG 0.878712 -58 GCGAGTCAGACATGCGGTAGGCACCAGGCGG 35 88 1 CAGCGGTAGG 0.733153 -28 GCATTGGGTTCACCGACTTGGGGATCACGAT 38 17 1 CACGACTTGG 0.566549 -284 CGACACCGGGCAAGCGGTAGGTGCCGCGAGT 38 193 0 CAGCGGTAGG 0.733152 -108 GCACGCCGCGCAGCGGCGTGAGGAGGAGCCG 42 98 0 CACGGCGTGA 0.575697 -105 GCACGCCGCGCAGCGGCGTGAGGAGGAGCCG 42 156 0 CACGGCGTGA 0.575697 -47 TGTCGACGACGATGCGGTGGGGGTACCACTC 45 20 1 GAGCGGTGGG 0.710385 -45 GTGCAGGATCGAGGGGCTTGGTACCTGATCA 46 120 0 GAGGGCTTGG 0.94068 -181 CTGCGACCTCGATGGGGTGGGAATCCGGGAA 46 244 0 GAGGGGTGGG 0.857534 -57 GCTGGCCGAGCAAGCGCTTGGTTGATAGTCT 46 274 1 CAGCGCTTGG 0.918008 -27 CGGCGCGGCGGATCGCGTTGGGGCACCGCTG 47 11 0 GACGCGTTGG 0.659544 -290 GGTAGTTGCTCCGGGATGGTGAGAAGGAA 48 238 0 CTCGGGATGG 0.702911 -19 ** ******** Masking position 10 Map Score: 17.459 Number of sites scoring better than the average of aligned sites = 4642 Number in coding regions = 4319 Number in noncoding regions = 323 Number of orfs with sites within 600 bp upstream = 266 Fraction of orfs with sites within 600 bp upstream = 0.0427241 Motif number 11 CCGAGACCTAACCGGCGGCCCCG 4 2 1 CGACCTAACC 0.896797 -87 ACCTAACCGGCGGCCCCGAAGCGTAGTGATGT 4 16 1 CGCCCGAAGC 0.577755 -73 GCGGTCATGGCGTCACCCTACCCAAGCCGAAC 7 35 0 CGACCCTACC 0.42994 -64 CGTGTATTGGCGCGCCCGACCCCCACACGATA 9 26 0 CGCCCGACCC 0.81251 -116 CGCCAATACACGTAACCGTATCGAGGACTAAC 9 46 1 CGACCGTATC 0.784483 -96 GGTCGGCACCCGGAACCGAGCCGTTT 13 22 1 CGACCGAGCC 0.99113 -16 CAGCAGGTCTCGACAGCGATCCGTCGATCTGG 15 53 0 CGAGCGATCC 0.662663 -112 AGATGGACTACGAAACCGATACCGACACCGAG 15 99 1 CGACCGATAC 0.79476 -66 AAACCGATACCGACACCGAGCTTGTCACCGAG 15 111 1 CGACCGAGCT 0.907193 -54 ACACCGAGCTTGTCACCGAGACCCTGGTTGAA 15 123 1 TGACCGAGAC 0.645356 -42 CGGCTACGAGTGGTCCCTAGCCTCGGCCGGAA 16 50 0 TGCCCTAGCC 0.526845 -49 ATTGCCTCATCGAGACCGTATCCGCAAGGCCG 17 63 1 CGACCGTATC 0.784483 -139 CACACAACACCGACACTGAGACATAAAGGTCC 18 163 1 CGACTGAGAC 0.408431 -138 CGCGCCGCAGCGATACCTTGCCCAACCAACAG 19 39 1 CGACCTTGCC 0.899932 -118 GGTGCCGGTACGGGACCTAGTCTTGAAGAAGG 19 92 1 CGACCTAGTC 0.896797 -65 TGGTTGGTAGCGTCGCCGATCCCAAGGGAGGA 21 151 1 CGGCCGATCC 0.855342 -47 CAACACCCCCCGGGACGGAGACCGGAGCCGGT 22 88 1 CGACGGAGAC 0.505755 -28 GCAATACCGACGTGATCGAGTCCAGTTACCAA 25 141 1 CGATCGAGTC 0.549851 -160 ACTCAAACAGCGCAAGCGAACCCGACCGAGTT 30 12 1 CGAGCGAACC 0.769125 -40 GCGAACGCATCGCAACCGTGTCGCGGGGGATC 33 18 0 CGACCGTGTC 0.920182 -241 GAGTTGGATATGCCACCTAATCAACACCTGGG 38 54 1 TGACCTAATC 0.193562 -247 CGGCGTGCATCGTCGCCGAGCTGTGTTGGACT 42 121 1 CGGCCGAGCT 0.735353 -82 CGGCGTGCATCGTCGCCGAGCTAGGTTATGGG 42 179 1 CGGCCGAGCT 0.735353 -24 AGTGTCAGCCCGCACCCTTGCCGGATCCTTGA 43 38 0 CGCCCTTGCC 0.806163 -23 CCCTCGTAGGCGTGACCGGGCCAGTAGCGCCC 44 40 0 CGACCGGGCC 0.918267 -33 CAGGCCGGCGCGCCCCCTATTCTGGACCTGTC 48 37 0 CGCCCTATTC 0.42796 -220 ** ******** Masking position 2 Map Score: 20.2457 Number of sites scoring better than the average of aligned sites = 5843 Number in coding regions = 5418 Number in noncoding regions = 425 Number of orfs with sites within 600 bp upstream = 373 Fraction of orfs with sites within 600 bp upstream = 0.0599101 Motif number 12 GATATATAAGGTCAGTCGGATGCGCTCG 6 4 0 GTCGGAGCGC 0.974256 -91 GACCTACTGGGTCAGGCCGACGAGCACTCGACCAT 14 26 1 GTCGGAGAGC 0.614391 -38 CTGGCTGAGTGTAGGTCAACGGCGCTAGGGCGT 16 9 0 GTAGACGCGC 0.608864 -90 GTTGGGCAAGGTATCGCTGCGGCGCGCATCGTCGC 19 30 0 GTACGCGCGC 0.751228 -127 GAACCAAGCCGTTGGGCCGGTGCGCTGTCCACGCC 23 32 1 GTTGGGGCGC 0.729615 -181 GCTTCTCCGGGTCGGTCAGATCGGCTTTCGGGTGC 25 249 1 GTCGGACGGC 0.356817 -52 CGCCCCACCCGTATGATCGCTGCGGCCACTGCGTC 27 116 1 GTAGGCGCGG 0.816727 -160 ACCCGACCGAGTTCGGGTGATCCGCGAGGGT 30 31 1 GTTGGACCGC 0.702124 -21 CAGGAGCGGCGCAGATGAGTCGCGCCGGTGACGAT 31 49 0 GCAAGTGCGC 0.837213 -252 CAGGAGCGGCGCAGATGAGTCGCGCCGGTGACGAT 31 102 0 GCAAGTGCGC 0.837213 -199 CAGGAGCGGCGCAGATGAGTCGCGCCGGTGACGAT 31 155 0 GCAAGTGCGC 0.837213 -146 GAGGAGCGGCGCAGATGAGTCGCGCCGGTGACGAT 31 208 0 GCAAGTGCGC 0.837213 -93 GATCCTCGGTATGTCGGAAGCGCTGGGTGGCCG 32 90 0 GTAGGAGCGC 0.987652 -23 TTTGGGGGCATAATGGAGGAAGCGCCAGTGTTGCG 33 71 1 TAAGGAGCGC 0.243875 -188 GGTGCCTACCGCATGTCTGACTCGCGTTAACATCG 35 78 0 GCAGGATCGC 0.918663 -38 CTTGCCGCCGGTACGCTAGAGGCGCCGTCGCCTGA 37 22 1 GTAGGAGCGC 0.987652 -75 TGGCCGTTGGGCACGCCGGACTCGCGGCACCTACC 38 174 1 GCAGGATCGC 0.903098 -127 AACCGCGTGAGCGGGTCAGCGGCGCGACGCTTAAA 39 18 1 GCGGGCGCGC 0.786387 -90 GTCCGATTAGGCTATGACGACGCGCGGAAGAATAT 46 22 1 GCTTGAGCGC 0.527615 -279 CGGCCCAGGTGCAGGATCGAGGGGCTTGGTACCTG 46 124 0 GCAGGAGGGC 0.917436 -177 CGGGAATTCGGTACGAGGGATGCGCCCTTCGCTCA 46 215 0 GTAGGAGCGC 0.987652 -86 CACCGTAACCGTCAGCACGACTCGGCACAATGCCA 47 116 1 GTCGGATCGG 0.328486 -185 *** * ** **** Masking position 14 Map Score: 18.9793 Number of sites scoring better than the average of aligned sites = 2804 Number in coding regions = 2575 Number in noncoding regions = 229 Number of orfs with sites within 600 bp upstream = 199 Fraction of orfs with sites within 600 bp upstream = 0.0319627 Motif number 13 CACTTTCCTCGGGATCTGGCGG 1 1 1 CCTTCCTCGG 0.481505 -93 GACAGGCTACCGCCTGACCCTGCCGGCAGTCG 2 12 0 CCTGACCCTG 0.490046 -25 CTGGTTCAACCGGGTGACTAGGATCGCGGTTA 6 67 1 CGTGACTAGG 0.871424 -28 GGAAGCCATTGTGGCCCCGGCGGTAGTGTG 11 9 1 TGGGCCCCGG 0.677621 -59 GCGGTCATGGCAGCTGACCAGCGCG 12 45 1 CGTGACCAGC 0.879304 -15 GACGTGGCCCCTGGTGCATCGGTCAGGACGGT 17 99 0 CGTGCATCGG 0.459886 -103 AGCCAGACACCAGGTGATCCGGAACAAACCAC 18 88 1 CGTGATCCGG 0.949332 -213 AGTAGTCCGACCGCTGACCAAGGCGCCCCCTG 23 137 1 CGTGACCAAG 0.634724 -76 GGGAAAGAATCTGCTTCTCCGGGTCGGTCAGA 25 237 1 CGTTCTCCGG 0.824746 -64 GCGAGCATGCCGGGTGCCGAGGTGCTGACAGA 27 164 1 CGTGCCGAGG 0.831124 -112 CACGGGCGCACTGGTGCCCAGGGAGTATTGGA 29 119 1 CGTGCCCAGG 0.984942 -182 TGCAGCAACTTCGGTGACTCGGCGGGAGCCGC 29 228 1 TGTGACTCGG 0.689143 -73 CGACCGAGTTCGGGTGATCCGCGAGGGT 30 34 1 CGTGATCCGC 0.769295 -18 CGGCTCGCAGCGGTTTCCCAGGCGGGATGTGC 33 142 1 CGTTCCCAGG 0.911461 -117 TGTGGCTCAGCACCTGCCCAGGTGTTGATTAG 38 70 0 CCTGCCCAGG 0.945466 -231 GCGGCACCTACCGCTTGCCCGGTGTCGGCCGG 38 197 1 CGTTGCCCGG 0.719491 -104 AAGCGTCGCGCCGCTGACCCGCTCACGCGGTT 39 18 0 CGTGACCCGC 0.939542 -90 CCAGATGTCTCCCGTGATCAGGTACCAAGCCC 46 106 1 CCTGATCAGG 0.697287 -195 AACGTCGCATCTAATGCCCCGGTGAGCGAAGG 46 193 1 CATGCCCCGG 0.876434 -108 CACAGTGCAATCGCTGACCAGGATGCAGTCAT 47 215 0 TGTGACCAGG 0.864569 -86 GGTAGTTGCTCCGGGATGGTGAGA 48 243 0 TGTGCTCCGG 0.824927 -14 * * ******** Masking position 5 Map Score: 18.5547 Number of sites scoring better than the average of aligned sites = 6138 Number in coding regions = 5749 Number in noncoding regions = 389 Number of orfs with sites within 600 bp upstream = 325 Fraction of orfs with sites within 600 bp upstream = 0.0522004 Motif number 14 TCGACGGATCGCTGTCGAGACCTGCTGGCGA 15 58 1 GCTGTGAGAC 0.617983 -107 CGGTCAGGACGGTGTAGCGGCCTTGCGGATA 17 81 0 GGTGTGCGGC 0.876783 -121 CGTGTCGAGAGCTTTTGCGTCTGGTGGGCGA 18 207 1 GCTTTGCGTC 0.896325 -94 CCAGACACAAGCTGAGTAGTCCGACCGCTGA 23 123 1 GCTGATAGTC 0.890136 -90 CGGTGCTCCAGGTTACGCGTCCCGGTATGGA 24 43 1 GGTTAGCGTC 0.888175 -128 TCGCGACTATGCTGAGTCGTC 26 97 1 GCTGATCGTC 0.962383 -11 CAGCAACTTCGGTGACTCGGCGGGAGCCGCA 29 230 1 GGTGATCGGC 0.843155 -71 CAGGAGCGGCGCAGATGAGTCGCGCCGGTGA 31 53 0 GCAGAGAGTC 0.839376 -248 CAGGAGCGGCGCAGATGAGTCGCGCCGGTGA 31 106 0 GCAGAGAGTC 0.839376 -195 CAGGAGCGGCGCAGATGAGTCGCGCCGGTGA 31 159 0 GCAGAGAGTC 0.839376 -142 GAGGAGCGGCGCAGATGAGTCGCGCCGGTGA 31 212 0 GCAGAGAGTC 0.839376 -89 TCCAACCTACGGTGTAGCGTCGCTGACCATG 31 276 0 GGTGTGCGTC 0.940954 -25 ATCACAACGCGGTTACGCGTCAGAAGATGCC 33 219 0 GGTTAGCGTC 0.888175 -40 GTGATCGCGAGCTGAGGAGACGGT 33 245 1 GCTGAGAGAC 0.760005 -14 TGGACACTTCGGTTAATCGTCACTAACGTAG 35 36 1 GGTTATCGTC 0.754115 -80 GTCGGGGGAAGTTTAAGCGTCGCGCCGCTGA 39 33 0 GTTTAGCGTC 0.507445 -75 CTCCTGTCGGGCTGATTCTTCGTCTCTAAGA 39 82 0 GCTGATCTTC 0.65331 -26 GCACCGGTTAGCTTTATCGGCGCGGCGGATC 47 28 0 GCTTTTCGGC 0.598491 -273 CGACATGTGCGATGTGGCGTCGTTCGTTGGC 47 57 0 GATGTGCGTC 0.673952 -244 TGCCATGCCGGCTGTATCGTCGCGCGGTTAG 47 270 1 GCTGTTCGTC 0.929135 -31 GCCGGCCTGCGCTGACTCTGCGTCCACCACG 48 60 1 GCTGATCTGC 0.446299 -197 ***** ***** Masking position 1 Map Score: 22.0637 Number of sites scoring better than the average of aligned sites = 3253 Number in coding regions = 2946 Number in noncoding regions = 307 Number of orfs with sites within 600 bp upstream = 241 Fraction of orfs with sites within 600 bp upstream = 0.0387086 Motif number 15 TTCTATCGTTGCACCCCGGGCCATTCGTCG 1 49 0 GCACCCCGGG 0.688087 -45 CACCGGCATCACGAGAACCAGAGGG 5 6 1 GCATCACGAG 0.590279 -37 CGGGTGACTAGGATCGCGGTTATCACCG 6 77 1 GGATCGCGGT 0.931311 -18 GGATATGGAGCGATCGCGAGCGCGGCGAAG 10 12 1 CGATCGCGAG 0.83162 -66 CGCGGAAGGGGGATCACGGTCTACGACCTT 12 18 0 GGATCACGGT 0.748606 -42 ACACAATATGGCATCGAGTGCCGAAATGGA 15 23 0 GCATCGAGTG 0.758548 -142 TATTGTGTCCAGATCGACGGATCGCTGTCG 15 45 1 AGATCGACGG 0.419899 -120 GAAGAGGTGTCCATCGACGGAAT 15 152 1 CCATCGACGG 0.850269 -13 GGTTTGTTCCGGATCACCTGGTGTCTGGCT 18 88 0 GGATCACCTG 0.492021 -213 CCGCCAGCCACCATCACCGGCAGCCGGCGT 23 65 1 CCATCACCGG 0.807112 -148 CCCATAAGTAGCATCAAGGGGTGCCC 23 197 1 GCATCAAGGG 0.798345 -16 GTCAACCTCCGATCGCGGTGGATCTGATC 24 10 1 CGATCGCGGT 0.910782 -161 GCGGAGCCCGGCACCGCCAGCAGTGCCTCG 25 18 1 GCACCGCCAG 0.701504 -283 CTGGACGTTGCCATCGAGTGGTATCACGAC 25 101 0 CCATCGAGTG 0.702851 -200 AGTCCAGTTACCAACGAGGTAGCCAGCATG 25 159 1 CCAACGAGGT 0.170326 -142 CCAGCCAACCAGACCGCGGGTAGGCGCGG 26 10 0 AGACCGCGGG 0.78989 -98 CCGGTCAACACCACCGCGGGCAGCCCAGCC 26 34 0 CCACCGCGGG 0.970031 -74 GGTAGGGCCGGCACCGCCGGGTCGGCACAC 26 63 0 GCACCGCCGG 0.951787 -45 GCAATGAGCGGCACCGACGTGGCCGGAGCC 27 28 1 GCACCGACGT 0.613762 -248 CTGCGGTTGCGGGTCGCCGGATGTAGTAGT 27 208 1 GGGTCGCCGG 0.74893 -68 TGGCCGTCGCCGACCGCCGGATGCGGCTCC 29 252 0 CGACCGCCGG 0.936964 -49 CAAGCGAACCCGACCGAGTTCGGGTGATCC 30 24 1 CGACCGAGTT 0.312288 -28 GAGCCGAAGTTGATCGCCGGCCGCACCAAA 33 118 0 TGATCGCCGG 0.688743 -141 GTCCCTAGACGCACCGCGGGGGCAATGGTA 34 12 1 GCACCGCGGG 0.977267 -71 ACCGACTTGGGGATCACGATATTACCGAGT 38 28 1 GGATCACGAT 0.261717 -273 CTGACGGCGCGGATCGAGTGTCCGTTGCTG 38 251 1 GGATCGAGTG 0.758548 -50 GCTTGGTACCTGATCACGGGAGACATCTGG 46 106 0 TGATCACGGG 0.514165 -195 CCCAGGTGCAGGATCGAGGGGCTTGGTACC 46 126 0 GGATCGAGGG 0.947439 -175 GATTCCCACCCCATCGAGGTCGCAGCTGGC 46 250 1 CCATCGAGGT 0.769454 -51 TCGGCGCGGCGGATCGCGTTGGGGCACCGC 47 13 0 GGATCGCGTT 0.702649 -288 GACTCTGCGTCCACCACGGGAATGTGCGAG 48 73 1 CCACCACGGG 0.876681 -184 GACCGGCTTCCCGTCGCGGGACGTTCGCGA 48 193 1 CCGTCGCGGG 0.829478 -64 ********** Masking position 5 Map Score: 36.3843 Number of sites scoring better than the average of aligned sites = 11039 Number in coding regions = 10312 Number in noncoding regions = 727 Number of orfs with sites within 600 bp upstream = 580 Fraction of orfs with sites within 600 bp upstream = 0.0931577