AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00650_mtub_reg_300.orf -o00650_mtub_300.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 Rv0144 101 hypothetical protein Rv0144 #2 Rv0145 88 hypothetical protein Rv0145 #3 Rv0146 42 hypothetical protein Rv0146 #4 Rv0147 94 hypothetical protein Rv0147 #5 lipW_Rv0218 92 lipW: lipW, Rv0218: hypothetical protein Rv0218 #6 Rv0221 43 hypothetical protein Rv0221 #7 echA1 30 echA1 #8 Rv0223c 98 hypothetical protein Rv0223c #9 Rv0224c 35 hypothetical protein Rv0224c #10 gabD2 25 gabD2 #11 Rv0235c 34 hypothetical protein Rv0235c #12 Rv0236c 300 hypothetical protein Rv0236c #13 fadA2 141 fadA2 #14 Rv0248c 30 hypothetical protein Rv0248c #15 Rv0249c 79 hypothetical protein Rv0249c #16 Rv0250c 144 hypothetical protein Rv0250c #17 hsp 213 hsp #18 Rv0466 151 hypothetical protein Rv0466 #19 aceA 274 aceA #20 fadB2 81 fadB2 #21 end 194 end #22 lpqP 31 lpqP #23 fadE8 59 fadE8 #24 fadA 156 fadA #25 echA6 26 echA6 #26 Rv0976c 197 hypothetical protein Rv0976c #27 echA9 186 echA9 #28 fadA4 300 fadA4 #29 frdA 300 frdA #30 Rv1707 300 hypothetical protein Rv1707 #31 Rv1714 173 hypothetical protein Rv1714 #32 gabD1 300 gabD1 #33 ilvG 70 ilvG #34 aceE 51 aceE #35 echA14 300 echA14 #36 pdhA 258 pdhA #37 scoA 82 scoA #38 fadD35 115 fadD35 #39 gabT 166 gabT #40 echA15 52 echA15 #41 echA16 46 echA16 #42 ilvB 300 ilvB #43 serB2 37 serB2 #44 ctaD 214 ctaD #45 lat 50 lat #46 Rv3291c_Rv3292 30 Rv3291c: hypothetical protein Rv3291c, Rv3292: hypothetical protein Rv3292 #47 aldB 26 aldB #48 sdhC 236 sdhC #49 sdhA 128 sdhA #50 Rv3371 191 hypothetical protein Rv3371 #51 otsB2 41 otsB2 #52 echA18 236 echA18 #53 gadB 37 gadB #54 Rv3435c 221 hypothetical protein Rv3435c #55 glmS 21 glmS #56 Rv3510c 300 hypothetical protein Rv3510c #57 echA19 73 echA19 #58 echA20 54 echA20 #59 fadA6 64 fadA6 #60 Rv3557c 300 hypothetical protein Rv3557c Motif number 1 GCACAGCGGCGGTGATCGCGTACGTCCAGA 1 63 0 GGTGATCGCG 0.856022 -39 TTTCGGATCTCCTCGCCGCACAGCGGCGGT 1 80 0 CCTCGCCGCA 0.893253 -22 CACTACGCTTCGGGGCCGCCGGTTAGGTCT 2 14 0 CGGGGCCGCC 0.877533 -75 CCTATGAGTAGGGGGCTGCG 6 34 1 GGGGGCTGCG 0.574286 -10 CGTCGCCGGCGGTCATGGCGTCACCCTACC 8 45 0 GGTCATGGCG 0.729067 -54 CGCTCGGCATCGTCGCCGGCGGTCATGGCG 8 55 0 CGTCGCCGGC 0.796468 -44 CGGCCCGCTAGGCTATCGACCA 9 3 0 GGCTATCGAC 0.576355 -33 CTGGCACACCCTACGGCCCGCTAGGCTA 9 18 0 CCCTACGGCC 0.798623 -18 GCAGAAGCGTGGGCCTGGCCCCCCAACC 12 9 0 GGGCCTGGCC 0.784494 -292 TTCATCGGTGGCTCCTCGACGGCTGTGGGT 12 66 0 GCTCCTCGAC 0.506204 -235 GGATCGTCGCGCCCGCCGCCGCAAGCGTGG 12 98 1 GCCCGCCGCC 0.516593 -203 TGTTGCTGGGCGCGGCCGCGATCTTCGGAG 12 137 1 CGCGGCCGCG 0.499929 -164 GACGACGGATCGCCCCCGGGGAGTGGCGGT 12 195 0 CGCCCCCGGG 0.782125 -106 CAGTGCTCAACCGGGTCGAGTACGGTAACC 12 227 1 CCGGGTCGAG 0.913826 -74 CCTGCGGCGCCCGGGTCGCGGGGCTAGCTA 12 258 0 CCGGGTCGCG 0.96083 -43 GGCCGCCTCAGCCTGCGGCGCCCGGGTCGC 12 269 0 GCCTGCGGCG 0.92985 -32 GAGGCGGCCTCCGGGTCGCAG 12 290 1 CCGGGTCGCA 0.911413 -11 CGTATCGTGTGGGGGTCGGGCGCGCCAATA 13 24 1 GGGGGTCGGG 0.89724 -118 ATACACGTAACCGTATCGAGGACTAACTTA 13 51 1 CCGTATCGAG 0.593978 -91 GATCAGTTCGGGGGATCGGCCGTTGAGGGC 13 109 0 GGGGATCGGC 0.729918 -33 CCGGATCATGCCGTATCGCGAA 16 3 0 CCGTATCGCG 0.826006 -142 GACCCATCGGCCCGGCCGGATCATGCCGTA 16 18 0 CCCGGCCGGA 0.826318 -127 CTGTCACACAGCCGGTCGCCAGGTGTGATC 17 75 0 GCCGGTCGCC 0.523511 -139 GGAACTTAAGCGTGGTCGACTCAGGTTCTT 17 131 1 CGTGGTCGAC 0.774897 -83 TCTTGGTATAGCGGGCCGGCAACGCGCCGG 17 157 1 GCGGGCCGGC 0.923005 -57 GGGCCGGCAACGCGCCGGACACAGCTAACT 17 169 1 CGCGCCGGAC 0.74785 -45 CCAACCGAGCGTACCGGGTGTTGTGAAG 18 9 1 GCGTACCGGG 0.7838 -143 ATCATGCCAACGCCGTGGCGGAAACACCAA 18 72 0 CGCCGTGGCG 0.502608 -80 CTCCCCATTTCCTCCTCGCGTGTACCTCAG 18 126 0 CCTCCTCGCG 0.799239 -26 TTCGGCAACGGCCTGCGGACTTTTTGCAAA 19 110 0 GCCTGCGGAC 0.824648 -165 GTCCGCAGGCCGTTGCCGAAATTCGCAAGT 19 120 1 CGTTGCCGAA 0.559229 -155 GCCGTTGACACCGCCTGGACGACGGTAGGG 19 213 1 CCGCCTGGAC 0.493026 -62 CGTATTCGTGGGCCCCGGCGCATAAAGTGT 21 92 0 GGCCCCGGCG 0.879364 -103 CGGCAGCATCCCGTGCCGCGGCTGGCCGGA 21 124 1 CCGTGCCGCG 0.967531 -71 CCGTGCCGCGGCTGGCCGGACGTGATCCGA 21 134 1 GCTGGCCGGA 0.78852 -61 CTTCAAGCCCCGCGGCACCTACCGTTG 22 8 1 CCCCGCGGCA 0.888735 -24 GGCGGTCGAGCCTATCCGGG 24 1 1 GGCGGTCGAG 0.886993 -156 GGCAAGGTATCGCTGCGGCGCGCATCGTCG 24 31 0 CGCTGCGGCG 0.844711 -126 CCCTAACAGGGCCCCCGGCCAACCTGTTGG 24 64 0 GCCCCCGGCC 0.885144 -93 AGACTAGGTCCCGTACCGGCACCCTAACAG 24 85 0 CCGTACCGGC 0.682563 -72 CTGACCTCCTGGGGCCGGCAAAGCACCCGG 26 15 1 GGGGCCGGCA 0.80933 -183 TGCCCTGTTTCGCGACGGAGATCGCTTCCT 26 105 0 CGCGACGGAG 0.767234 -93 GGATGACAACGCTGGCCGGGAACCCGGGCC 27 77 0 GCTGGCCGGG 0.904461 -110 GCCCAGCGGTGCCCGCGGGGGCTAAGGTTT 27 118 0 GCCCGCGGGG 0.507828 -69 GGGCCTCGCCTCCCCTGAAG 27 177 0 GGGCCTCGCC 0.871988 -10 TTGCGCCGCGGAGCCCGGCACCG 28 4 1 CGCCGCGGAG 0.841945 -297 CCGCGGAGCCCGGCACCGCCAGCAGTGCCT 28 16 1 CGGCACCGCC 0.904237 -285 TCGTTGATTTCCTCGTGGACCAGGATCATG 28 63 1 CCTCGTGGAC 0.59939 -238 CGTCCAGGTCGGCGACCGCAATACCGACGT 28 124 1 GGCGACCGCA 0.848232 -177 GCAATACCGACGTGATCGAGTCCAGTTACC 28 141 1 CGTGATCGAG 0.627857 -160 AGCATGTGACGGGCGTGGACTTGATCGGTC 28 183 1 GGGCGTGGAC 0.784336 -118 CGCCTCCTCCGGTGCTGGCACGTGACCTAG 29 33 0 GGTGCTGGCA 0.481454 -268 GCAAAAAGCGCCCTGCGGGCACATGGTTGA 29 97 1 CCCTGCGGGC 0.756672 -204 CGCTCGATGTGGTGATCGCCGTCAACCATG 29 118 0 GGTGATCGCC 0.808766 -183 GCAAGGCCTTCGTCGTCGCGCTCGATGTGG 29 136 0 CGTCGTCGCG 0.907745 -165 GTTTTCCTGCGGCTGCCGCGAAATCCGGCA 29 181 1 GGCTGCCGCG 0.879062 -120 GTTCACGCTTCGTGATCGCCGCTGTGCTCG 29 274 0 CGTGATCGCC 0.777925 -27 GGCTGCTATCCGCGATGGCACCAAACGTCG 30 18 0 CGCGATGGCA 0.659087 -283 GCCGCTGTGAGCCCATGGCAAGTTGGCCCA 30 107 0 GCCCATGGCA 0.66846 -194 GGCTCACAGCGGCTATCGCGAGCGTGTAGC 30 124 1 GGCTATCGCG 0.846275 -177 TACCGGCACTCCCTGCGGCAACCATGCCGC 30 212 0 CCCTGCGGCA 0.845176 -89 CAGCGGGCCAGGTTGCCGACCAGACTTACC 30 238 0 GGTTGCCGAC 0.78004 -63 CGGCAACCTGGCCCGCTGCGGGTTGGGTTC 30 250 1 GCCCGCTGCG 0.504178 -51 CGGCTAGTAAGGTGCTCGCCTG 30 289 1 GGTGCTCGCC 0.803552 -12 CCGGGTAACCGGGGATGGACAGCGAGGCCG 31 31 1 GGGGATGGAC 0.613527 -143 CACGAAGAACCGGCCTCGCGATGTTCATGT 32 14 0 CGGCCTCGCG 0.890719 -287 AACCAAATTCGCTTCCGGCAGTCCCTTGGG 32 59 0 GCTTCCGGCA 0.453153 -242 GCGCCGCTTGGGGCGTCGCGAGAGATTCGG 32 89 1 GGGCGTCGCG 0.955362 -212 AGGGCGTAGGCGCTGCGGCGTGCACGGCTT 32 150 1 CGCTGCGGCG 0.844711 -151 CATCAATACGGGTTGTGGGGCCAAGCCGTG 32 172 0 GGTTGTGGGG 0.544221 -129 ATCGGCAGCCTATCGACAACCTTCGGG 33 54 0 GCCTATCGAC 0.583323 -17 CGCAAGCGAACCCGACCGAGTTCGGGTGAT 34 22 1 CCCGACCGAG 0.874513 -30 GACCTTTCGCGCGTGTGGCGTCTGGAAAAA 35 67 1 GCGTGTGGCG 0.897217 -234 ATCTAACGGTGGCCGTCGAGGAATTTTTCC 35 90 0 GGCCGTCGAG 0.891602 -211 AAACTGACCTGCGCATCGCCTCCGTAGCTC 35 120 1 GCGCATCGCC 0.884783 -181 TTTCCACAGTGCCCCCGGCACGACTCGAAC 35 190 0 GCCCCCGGCA 0.798032 -111 AGGCGACTCTGGGCGTCGACCCATAACGAG 35 255 0 GGGCGTCGAC 0.87188 -46 CGCATCGCAACCGTGTCGCGGGGGATCTGC 36 15 0 CCGTGTCGCG 0.932253 -244 CGTTCGCGATCGGTCCGGACTCTTCACATT 36 43 1 CGGTCCGGAC 0.509223 -216 CAAAGCTTCCGCTCGCCGCAACACTGGCGC 36 92 0 GCTCGCCGCA 0.908535 -167 GAAGTTGATCGCCGGCCGCACCAAAGCTTC 36 113 0 GCCGGCCGCA 0.923068 -146 TCCGCCTGGTGCCTACCGCATGTCTGACTC 38 90 0 GCCTACCGCA 0.807118 -26 GGCCTGGCACCGTGATCGCAATACCAATAC 39 24 0 CGTGATCGCA 0.620761 -143 AGGCCTACCCGCGGGCCGCGCACCTGGTAA 39 49 1 GCGGGCCGCG 0.966634 -118 TCCTCCTCACCCGGCTCGCCGGTTCACATC 39 144 0 CCGGCTCGCC 0.88198 -23 TACGCAGGTGCGGGGTGGCGGTCGTGGCAG 40 22 0 CGGGGTGGCG 0.919678 -31 GTGGGCGTCGAGTTCGCGAGCG 42 3 1 GGGCGTCGAG 0.906243 -298 GCGAGCGTAACGCCACCGCGAAAATTCGCA 42 26 1 CGCCACCGCG 0.500136 -275 GATCCGCGAGCGTGACGGCACTGCGAAATC 42 59 0 CGTGACGGCA 0.65481 -242 GGGGCCCAACCGGTACGGCCCCA 43 4 0 CGGTACGGCC 0.790074 -34 CCCGCCGGACAGCACGCGTT 44 1 1 CCCGCCGGAC 0.753446 -214 GGGGTCGACGGCTGGCCGAGTGCTACCGTC 44 32 0 GCTGGCCGAG 0.928318 -183 CCGCGCGAATCGGGGTCGACGGCTGGCCGA 44 43 0 CGGGGTCGAC 0.878802 -172 CCCGATTCGCGCGGGCGGAAAGCGTTGGTC 44 59 1 GCGGGCGGAA 0.813551 -156 GTCTGCAACGGCCCGCCGGCGGAGTCTGGC 44 86 1 GCCCGCCGGC 0.504339 -129 GTAGGACCAGGCCTGCCGCCAGCCTGATCG 44 130 1 GCCTGCCGCC 0.92766 -85 CTGCCGCCAGCCTGATCGAGGGCTAAGATG 44 142 1 CCTGATCGAG 0.634512 -73 AACATCCAGCCCGGACCGGGCCAAAACCCA 44 183 0 CCGGACCGGG 0.870697 -32 TTCTTAGTCGGCCCATCGACGAGCGGGGTT 48 16 0 GCCCATCGAC 0.731022 -221 CACACACGATCCCGATCGGACTGTTCGACA 48 67 1 CCCGATCGGA 0.540318 -170 AGGTTGCCCGCGGTGTCGAACAGTCCGATC 48 80 0 CGGTGTCGAA 0.552066 -157 CGCGCGAGACGGTTGTCGCCGTTGTATTCA 48 176 0 GGTTGTCGCC 0.84134 -61 GGTCCGAGGTGGCCGCCGCCCGCGCGAGAC 48 196 0 GGCCGCCGCC 0.501897 -41 GGTACCGCCCGCTTGCGGGGGAGAGGTGGC 49 37 0 GCTTGCGGGG 0.727157 -92 GATGAGGTGGGGGTACCGCCCGCTTGCGGG 49 48 0 GGGTACCGCC 0.893133 -81 GAAGCGACGAGGGGGCCGCAGCGATGAGGT 49 70 0 GGGGGCCGCA 0.962402 -59 TGGGGGCACCCCCAGCCGCGAAGCGACGAG 49 89 0 CCCAGCCGCG 0.444894 -40 CTGCATCGTCGGCGGCGGCG 49 119 1 GGCGGCGGCG 0.500454 -10 TGGAGCAACGGGCCGCCGAGCTGGGCGGAA 50 11 0 GGCCGCCGAG 0.889897 -181 TAAGTGTCCGCCGGACCGCACCGGAAGCAG 50 137 0 CCGGACCGCA 0.885025 -55 GGGGGTCAACGCCGACGGAGATGGCG 51 7 0 GCCGACGGAG 0.837922 -35 GGAGCGTATCGCCCGCGGCGGCACCGCGTC 52 11 0 GCCCGCGGCG 0.524748 -226 CCAAGTCTGTCGCCGCCGCGGCCAGCATCT 52 89 0 CGCCGCCGCG 0.501623 -148 CTACCAGCCAGGTCACCGCAGAGGACGCGC 52 151 0 GGTCACCGCA 0.769058 -86 GACCTGTGCCGCGTCTCGAGTTCTCTGGCA 52 211 0 GCGTCTCGAG 0.608274 -26 CGGTACGGGACCTGGCGGCCCAAGACACTC 54 24 1 CCTGGCGGCC 0.90285 -198 CGATCCACGTGGCGACCGCGGAGACGTTGG 54 58 1 GGCGACCGCG 0.501347 -164 CGGAGACGTTGGGTGCGGAGTTGACGGCGA 54 76 1 GGGTGCGGAG 0.85012 -146 GGAAGATGGCGGCTGTCGCACAATCACGTG 54 121 1 GGCTGTCGCA 0.844544 -101 CACGTGGCCTGGCGGTGGCATCCGCTGACG 54 145 1 GGCGGTGGCA 0.841322 -77 GGTGGCATCCGCTGACGGAGGGGTCCCGCG 54 158 1 GCTGACGGAG 0.70488 -64 GCTGACGGAGGGGTCCCGCGGTTACAATTT 54 168 1 GGGTCCCGCG 0.91398 -54 GTTACAATTTCCGGGCCGGAACGCACAAGT 54 188 1 CCGGGCCGGA 0.868716 -34 AGGCGAAGCACCGCGTGGCCACGAACGCCG 56 92 1 CCGCGTGGCC 0.905778 -209 CGAGATTGTCCCTCCCGGCGTTCGTGGCCA 56 107 0 CCTCCCGGCG 0.821876 -194 AGAAGCCCTAGCCGCCCGAGATTGTCCCTC 56 123 0 GCCGCCCGAG 0.905988 -178 TACGTTCGGGCCTTCCCGCGAGAAGCCCTA 56 143 0 CCTTCCCGCG 0.813801 -158 CCCGAATGTTCGCGGTCGGAGGGCGACGCG 56 189 0 CGCGGTCGGA 0.716407 -112 GCGAACATTCGGGGATGGCAGCAACCTGGT 56 206 1 GGGGATGGCA 0.6863 -95 CTGGTAGCACCCTGGCCGGGCGATGATCTG 56 231 1 CCTGGCCGGG 0.883843 -70 TGATCTGCAGCGTCGCCGCGGGTAGTCGCC 56 254 1 CGTCGCCGCG 0.912836 -47 CTGTAGCCGCCCGGGCGGCGACTACCCGCG 56 270 0 CCGGGCGGCG 0.951102 -31 ACCTCTTTCTGCCCGTCGGGTGTGAGCTTG 57 38 0 GCCCGTCGGG 0.533797 -36 GGCAGAAAGAGGTGGCGGCCGTGGCAACC 57 55 1 GGTGGCGGCC 0.878397 -19 AATGCCCCGTGTCGACGACGATGCGG 59 7 1 CCGTGTCGAC 0.749135 -58 TGAGTGGTACCCCCACCGCATCGTCGTCGA 59 22 0 CCCCACCGCA 0.859373 -43 GAGACATCTGGGGTATCGGCGGAGAGTGCC 60 87 0 GGGTATCGGC 0.533467 -214 TGCGCCCTTCGCTCACCGGGGCATTAGATG 60 200 0 GCTCACCGGG 0.768184 -101 CGGATTCCCACCCCATCGAGGTCGCAGCTG 60 248 1 CCCCATCGAG 0.763672 -53 CGAGGTCGCAGCTGGCCGAGCAAGCGCTTG 60 264 1 GCTGGCCGAG 0.928318 -37 ********** Masking position 8 Map Score: 180.776 Number of sites scoring better than the average of aligned sites = 141166 Number in coding regions = 132473 Number in noncoding regions = 8693 Number of orfs with sites within 600 bp upstream = 1743 Fraction of orfs with sites within 600 bp upstream = 0.279955 Motif number 2 CCAGACCTGGGCCATGGTTGCGCTGCTGAT 1 38 0 GCCATGGTTG 0.607717 -64 CTCCTCGCCGCACAGCGGCGGTGATCGCGT 1 72 0 CACAGCGGCG 0.54261 -30 CGTTTCGGATCTCCTCGCCGCACAGCGGCG 1 82 0 CTCCTCGCCG 0.870524 -20 CGATCCTAGTCACCCGGTTGAACCAGCAAT 4 63 0 CACCCGGTTG 0.708483 -32 GCCTGCCAAAGCCATCGCTGTACCGAGGCG 5 47 1 GCCATCGCTG 0.861974 -46 GTCGCCGGCGGTCATGGCGTCACCCTACCC 8 44 0 GTCATGGCGT 0.388434 -55 CGCTGCGCTCGGCATCGTCGCCGGCGGTCA 8 60 0 GGCATCGTCG 0.873036 -39 GCCGCTCCTCCTCATCGCTGCGCTCGGCAT 8 75 0 CTCATCGCTG 0.61961 -24 TTACTCCTTGGACACGGCGTTCACACCAA 11 10 0 GACACGGCGT 0.6998 -25 GGTTGGGGGGCCAGGCCCACGCTTCTGC 12 9 1 GGCCAGGCCC 0.790584 -292 TCAAGCCGCACCCACAGCCGTCGAGGAGCC 12 57 1 CCCACAGCCG 0.54434 -244 ACAGACCAACCACCACGCTTGCGGCGGCGG 12 110 0 CACCACGCTT 0.494315 -191 CGAAGATCGCGGCCGCGCCCAGCAACAGAC 12 134 0 GGCCGCGCCC 0.741237 -167 ACGACGGATCGCCCCCGGGGAGTGGCGGTT 12 194 0 GCCCCCGGGG 0.759572 -107 TACCGTACTCGACCCGGTTGAGCACTGATG 12 224 0 GACCCGGTTG 0.795905 -77 CTAGCCCCGCGACCCGGGCGCCGCAGGCTG 12 261 1 GACCCGGGCG 0.698634 -40 CTGAGGCGGCCTCCGGGTCGCAG 12 288 1 CTCCGGGTCG 0.522504 -13 CGGACCCATCGGCCCGGCCGGATCATGCCG 16 20 0 GGCCCGGCCG 0.98469 -125 CACAGCCGGTCGCCAGGTGTGATCACAGCG 17 69 0 CGCCAGGTGT 0.390447 -145 CGAACACTGTCACACAGCCGGTCGCCAGGT 17 81 0 CACACAGCCG 0.511557 -133 GCTTAAGTTCCACCTCGGCGTTCACCGGAA 17 112 0 CACCTCGGCG 0.685775 -102 AACCTGAGTCGACCACGCTTAAGTTCCACC 17 128 0 GACCACGCTT 0.608028 -86 ATAGCGGGCCGGCAACGCGCCGGACACAGC 17 164 1 GGCAACGCGC 0.564813 -50 TGCGAATCATGCCAACGCCGTGGCGGAAAC 18 77 0 GCCAACGCCG 0.933292 -75 TCCCCATTTCCTCCTCGCGTGTACCTCAGG 18 125 0 CTCCTCGCGT 0.409867 -27 GGCACAGCGTGTCAACGCTGGTCCACCCAT 19 153 0 GTCAACGCTG 0.69961 -122 GACACGCTGTGCCATGGTCGAGTTAGCACA 19 170 1 GCCATGGTCG 0.793894 -105 CTGCGCCGTTGACACCGCCTGGACGACGGT 19 209 1 GACACCGCCT 0.817116 -66 CGTATTCGTGGGCCCCGGCGCATAAAGTGT 21 92 0 GGCCCCGGCG 0.744761 -103 CGCTGCGGCGCGCATCGTCGCCCGGATAGG 24 21 0 CGCATCGTCG 0.812494 -136 CCCTAACAGGGCCCCCGGCCAACCTGTTGG 24 64 0 GCCCCCGGCC 0.407181 -93 GCCGGCAAAGCACCCGGCGTCCCGTAGCGA 26 28 1 CACCCGGCGT 0.709177 -170 GGACGGCGCAGACCGGGCCGCTTCGACTCA 26 76 1 GACCGGGCCG 0.933439 -122 AGGGAGGAATCGCATGGCCCTGACTGTGGT 26 175 1 CGCATGGCCC 0.61425 -23 ATCAGTAGTAGGCCCGGGTTCCCGGCCAGC 27 67 1 GGCCCGGGTT 0.539817 -120 GTACCCGGATGACAACGCTGGCCGGGAACC 27 83 0 GACAACGCTG 0.831453 -104 AGCCCCCGCGGGCACCGCTGGGCGAGCCAC 27 125 1 GGCACCGCTG 0.948668 -62 GGGCCTCGCCTCCCCTGAAGA 27 176 0 GGCCTCGCCT 0.892922 -11 GCATCCGCGAGGCACTGCTGGCGGTGCCGG 28 25 0 GGCACTGCTG 0.607445 -276 CCAGGATCATGCCAAGGTGGTCGTGATACC 28 82 1 GCCAAGGTGG 0.654305 -219 CGATGGCAACGTCCAGGTCGGCGACCGCAA 28 115 1 GTCCAGGTCG 0.704559 -186 GACCGATCAAGTCCACGCCCGTCACATGCT 28 183 0 GTCCACGCCC 0.489139 -118 GAATCTGCTTCTCCGGGTCGGTCAGATCGG 28 243 1 CTCCGGGTCG 0.522504 -58 AAGCAAAAAGCGCCCTGCGGGCACATGGTT 29 95 1 CGCCCTGCGG 0.68324 -206 GCCCTGCGGGCACATGGTTGACGGCGATCA 29 106 1 CACATGGTTG 0.461166 -195 GGTCGTCGTAGGCAAGGCCTTCGTCGTCGC 29 147 0 GGCAAGGCCT 0.812382 -154 TCGACACGACGGCAAGGTGTTGAAGGACGA 29 247 1 GGCAAGGTGT 0.379766 -54 GAAGGACGAGCACAGCGGCGATCACGAAGC 29 268 1 CACAGCGGCG 0.54261 -33 GACGTTTGGTGCCATCGCGGATAGCAGCCA 30 19 1 GCCATCGCGG 0.894382 -282 GGGCCAACTTGCCATGGGCTCACAGCGGCT 30 108 1 GCCATGGGCT 0.373742 -193 TGCCGCTCAGGCCACCGTCGCCTGGACGAT 30 159 0 GCCACCGTCG 0.874631 -142 ATCCTCTTGCGGCATGGTTGCCGCAGGGAG 30 204 1 GGCATGGTTG 0.725713 -97 ACCCGCAGCGGGCCAGGTTGCCGACCAGAC 30 243 0 GGCCAGGTTG 0.798225 -58 CAGCAGAACCGGCCTCGCTGTCCATCCCCG 31 40 0 GGCCTCGCTG 0.946518 -134 ATTCGGCAATCCCCTGGCTGGAGGATCCCG 32 113 1 CCCCTGGCTG 0.86175 -188 CAGCGCCTACGCCCTGGCTGAACGGGATCC 32 135 0 GCCCTGGCTG 0.908379 -166 CCGTGCACGCCGCAGCGCCTACGCCCTGGC 32 147 0 CGCAGCGCCT 0.675018 -154 CGGGTTGTGGGGCCAAGCCGTGCACGCCGC 32 164 0 GGCCAAGCCG 0.736424 -137 AACTGACCTGCGCATCGCCTCCGTAGCTCA 35 121 1 CGCATCGCCT 0.759928 -180 TCGTGCCGGGGGCACTGTGGAAATAGCAGG 35 197 1 GGCACTGTGG 0.352358 -104 CAAGCCACGCCACCATGCTGACCTGCTATT 35 218 0 CACCATGCTG 0.301672 -83 GGCGTGGCTTGACACCGCCTCGTTATGGGT 35 237 1 GACACCGCCT 0.817116 -64 GATCCCCCGCGACACGGTTGCGATGCGTTC 36 18 1 GACACGGTTG 0.701793 -241 AGCTCGCGATCACAACGCGGTTACGCGTCA 36 228 0 CACAACGCGG 0.808254 -31 GAATACCATTGCCCCCGCGGTGCGTCTAGG 37 15 0 GCCCCCGCGG 0.960355 -68 ATGCGGTAGGCACCAGGCGGAGGAACC 38 99 1 CACCAGGCGG 0.869714 -17 CTCGCCGGTTCACATCGCTGGTAAAGCCTA 39 130 0 CACATCGCTG 0.775287 -37 AGATCCTCCTCACCCGGCTCGCCGGTTCAC 39 147 0 CACCCGGCTC 0.483177 -20 CATGGGATTTCGCAGTGCCGTCACGCTCGC 42 54 1 CGCAGTGCCG 0.478656 -247 GATCAAGACTGACACCGCGGATTTGACTGC 42 85 1 GACACCGCGG 0.92787 -216 GGACACTATGGACAAGGCCGGAAAGCCCGG 42 138 1 GACAAGGCCG 0.921473 -163 CGGTTTGTAGGACCAGGCCTGCCGCCAGCC 44 124 1 GACCAGGCCT 0.786776 -91 TTTTGGCCCGGTCCGGGCTGGATGTTTGGA 44 187 1 GTCCGGGCTG 0.729277 -28 GCGGCACTGCCGTTGCGATAGT 46 3 1 GGCACTGCCG 0.793706 -28 CGGACTGTTCGACACCGCGGGCAACCTGGC 48 83 1 GACACCGCGG 0.92787 -154 AGCTTAACTTGGCCAGGTTGCCCGCGGTGT 48 94 0 GGCCAGGTTG 0.798225 -143 TAAGGGGTTTGCCAGCGGTGAATACAACGG 48 158 1 GCCAGCGGTG 0.464897 -79 GTACCCCCACCTCATCGCTGCGGCCCCCTC 49 62 1 CTCATCGCTG 0.61961 -67 TCGCTGCGGCCCCCTCGTCGCTTCGCGGCT 49 76 1 CCCCTCGTCG 0.80791 -53 AGTGGGGGCACCCCCAGCCGCGAAGCGACG 49 91 0 CCCCCAGCCG 0.661018 -38 GACAAGTCCCCACCGTCGTTTTGCGACC 50 174 0 CCCACCGTCG 0.814684 -18 TCTCACGGGGGTCAACGCCGACGGAGATGG 51 13 0 GTCAACGCCG 0.852742 -29 CGCCCGCGGCGGCACCGCGTC 52 2 0 GGCACCGCGT 0.825989 -235 CATGGCCGTCCTCCTCGTTGACGGTCGGAG 52 37 0 CTCCTCGTTG 0.412167 -200 CAATGCAAACCACATGGCCGTCCTCCTCGT 52 49 0 CACATGGCCG 0.891385 -188 CGGAGATGCTGGCCGCGGCGGCGACAGACT 52 86 1 GGCCGCGGCG 0.67922 -151 CCTCTGCGGTGACCTGGCTGGTAGCTTAGG 52 157 1 GACCTGGCTG 0.896835 -80 TCTCTGGCAGCACCCGGTGTCGATAAAGAC 52 190 0 CACCCGGTGT 0.387374 -47 CACGGTACGGGACCTGGCGGCCCAAGACAC 54 22 1 GACCTGGCGG 0.92179 -200 TCTCCGCGGTCGCCACGTGGATCGCGTCGA 54 52 0 CGCCACGTGG 0.779205 -170 CAACTCCGCACCCAACGTCTCCGCGGTCGC 54 69 0 CCCAACGTCT 0.302169 -153 ACAATCACGTGGCCTGGCGGTGGCATCCGC 54 140 1 GGCCTGGCGG 0.958205 -82 CGGCGTTCGTGGCCACGCGGTGCTTCGCCT 56 92 0 GGCCACGCGG 0.955783 -209 GAGATTGTCCCTCCCGGCGTTCGTGGCCAC 56 106 0 CTCCCGGCGT 0.535178 -195 CCCGCGAGAAGCCCTAGCCGCCCGAGATTG 56 129 0 GCCCTAGCCG 0.644893 -172 ATCATCGCCCGGCCAGGGTGCTACCAGGTT 56 228 0 GGCCAGGGTG 0.733702 -73 AGACTGTAGCCGCCCGGGCGGCGACTACCC 56 273 0 CGCCCGGGCG 0.495677 -28 GGTTGCCACGGCCGCCACCTCTTT 57 60 0 GCCACGGCCG 0.962602 -14 GTACCCCCACCGCATCGTCGTCGACACGGG 59 16 0 CGCATCGTCG 0.812494 -49 CCTGCACCTGGGCCGGGCTGTGCGGGCAAG 60 144 1 GGCCGGGCTG 0.916565 -157 GGGCTGTGCGGGCAAGGCGTCCATCCAGCG 60 158 1 GGCAAGGCGT 0.702504 -143 ********** Masking position 7 Map Score: 88.8035 Number of sites scoring better than the average of aligned sites = 71737 Number in coding regions = 67529 Number in noncoding regions = 4208 Number of orfs with sites within 600 bp upstream = 1452 Fraction of orfs with sites within 600 bp upstream = 0.233216 Motif number 3 CGAGCGCATCCGACTGACCTTATA 4 3 1 AGCGACCGAC 0.965136 -92 GTTCGTCGGGAGCTAATCGGCCCGT 10 4 0 AGCTACGGCC 0.871655 -22 CCGTGTCCAAGGAGTAACGGCC 11 23 1 GGAGACGGCC 0.975737 -12 CACTGATGACGACGGATCGCCCCCGGGGAGTG 12 200 0 GACGACGCCC 0.861026 -101 TGATCAGTTCGGGGGATCGGCCGTTGAGGGCC 13 108 0 GGGGACGGCC 0.702569 -34 AAGGGTACACAGAGAACGGCCCCCTTTTTCTG 15 25 0 AGAGAGGCCC 0.925878 -55 GCTCCGGGGAAACGTATCCCACAAGGAGAAAC 21 62 1 AACGACCCAC 0.715676 -133 TGGGGCCGGCAAAGCACCCGGCGTCCCGTAGC 26 24 1 AAAGACCGGC 0.745224 -174 GGCGTCCCGTAGCGAAACGGACTCTACTCCAA 26 43 1 AGCGACGGAC 0.972892 -155 CGCTTCCTGAGTCGAAGCGGCCCGGTCTGCGC 26 81 0 GTCGACGGCC 0.718853 -117 AGCCATCAAGAGAGGATCCGACG 27 2 0 AGAGACCGAC 0.942055 -185 CTACCTCCTCAGCGCACCCGAAAGCCGATCTG 28 265 0 AGCGACCGAA 0.82782 -36 TTACTAGCCGAGCGAATCCGAACCCAACCCGC 30 267 0 AGCGACCGAA 0.827819 -34 ATTATGGGACAGCAGAACCGGCCTCGCTGTCC 31 47 0 AGCAACCGGC 0.747247 -127 TATACGAGAAAGCGTAAGCGCCGAGCGCTCGG 31 121 0 AGCGAGCGCC 0.979711 -53 ACGTTACCACGAAGAACCGGCCTCGCGATGTT 32 19 0 GAAGACGGCC 0.855877 -282 ACCTGAACAAGAAGAACCCGGCATTCGTCGAG 32 204 1 GAAGACCGGC 0.643382 -97 TCTAGGGCACAGAGTATCGGCCTGCGATTGGT 32 249 0 AGAGACGGCC 0.984894 -52 AAACAGCGCAAGCGAACCCGACCGAGTTCGGG 34 16 1 AGCGACCGAC 0.971265 -36 TCAGGTGGATAGAGCAAGGGCCTTCTAATCCC 35 148 1 AGAGAGGGCC 0.961196 -153 GGGGCATAATGGAGGAAGCGCCAGTGTTGCGG 36 75 1 GGAGAGCGCC 0.929242 -184 CGGCGCTCACAGCACATCCCGCCTGGGAAACC 36 153 0 AGCAACCCGC 0.598534 -106 CGAGTTCGCGAGCGTAACGCCACCGCGAAAAT 42 19 1 AGCGACGCCA 0.906536 -282 AATGTGGGGTGGAGCAACGGGCCGCCGAGCTG 50 18 0 GGAGACGGGC 0.928429 -174 CCGCACCGGAAGCAGAAGGCCCAAACGGTTAA 50 120 0 AGCAAGGCCC 0.650884 -72 TGACGGTCGGAGCGTATCGCCCGCGGCGGCAC 52 17 0 AGCGACGCCC 0.985545 -220 CCGTCAACGAGGAGGACGGCCATGTGGTTTGC 52 43 1 GGAGAGGCCA 0.522871 -194 AGGTCACCGCAGAGGACGCGCATAGGCGGCGC 52 140 0 AGAGAGCGCA 0.768428 -97 ACAAGCCCGGAAAGGATCCGCC 53 26 1 AAAGACCGCC 0.900634 -12 CCCCTCCGTCAGCGGATGCCACCGCCAGGCCA 54 149 0 AGCGAGCCAC 0.865285 -73 GCGACGCTGCAGATCATCGCCCGGCCAGGGTG 56 238 0 AGATACGCCC 0.622832 -63 TTGCTTAGGTAGCGAACCCGCAGGAGTGCA 58 35 1 AGCGACCGCA 0.947684 -20 TGCCCCGGTGAGCGAAGGGCGCATCCCTCGTA 60 207 1 AGCGAGGCGC 0.893122 -94 **** * ***** Masking position 6 Map Score: 36.5799 Number of sites scoring better than the average of aligned sites = 7915 Number in coding regions = 7320 Number in noncoding regions = 595 Number of orfs with sites within 600 bp upstream = 479 Fraction of orfs with sites within 600 bp upstream = 0.0769354 Motif number 4 TCCAGACCTGGGCCATGGTTGCGCTGCTGATCG 1 36 0 GGCCAGGTGG 0.769663 -66 CGGCGGTGATCGCGTACGTCCAGACCTGGGCCA 1 54 0 CGCGTCGTCG 0.585961 -48 ACCTAACCGGCGGCCCCGAAGCGTAGTGATGTG 2 16 1 CGGCCCGAGG 0.538144 -73 GGCGCTCATCCTGTGCTCCCTCT 3 30 0 GGCGCCATCG 0.826178 -13 CGGTGATAACCGCGATCCTAGTCACCCGGTTGA 4 72 0 CGCGACCTGC 0.668309 -23 CAGGCCACCATCCCGATCCTCGTTC 5 3 1 GGCCACATCG 0.440089 -90 GCGATGGCTTTGGCAGGCTGCGGTTAGTCGAAC 5 32 0 TGGCAGCTCG 0.86096 -61 GGCGCAATTTCGCCTCGGTACAGCGATGGCTTT 5 54 0 CGCCTGGTCG 0.748889 -39 ACTGGCCTCATACTCGTCCGGTGTT 7 16 0 TGGCCCATCC 0.585137 -15 CATGACCGCCGGCGACGATGCCGAGCGCAGCGA 8 58 1 GGCGAGATCG 0.556644 -41 ATGCGCCGCTCCTCCTCATCGCTG 8 85 0 TGCGCGCTCC 0.901363 -14 GCACACCCTACGGCCCGCTAGGCTATCGACCA 9 10 0 CGGCCGCTGC 0.881803 -26 CGGCGGCGGGCGCGACGATCCGGTTCATCGGTG 12 86 0 CGCGAGATCG 0.891008 -215 ATCGCGGCCGCGCCCAGCAACAGACCAACCACC 12 126 0 CGCCCGCACG 0.908957 -175 CCGGGTCGCGGGGCTAGCTACGGTTACCGTACT 12 245 0 GGGCTGCTCG 0.65 -56 CAGCCTGCGGCGCCCGGGTCGCGGGGCTAGCTA 12 258 0 CGCCCGGTGG 0.912764 -43 CGTGTATTGGCGCGCCCGACCCCCACACGATAC 13 25 0 CGCGCCGACC 0.660361 -117 AAAACCTCGCTCAGCTTCTGAAACGATCCT 14 11 0 CGCTCGCTCG 0.650371 -20 TTCGCGATACGGCATGATCCGGCCGGGCCGAT 16 10 1 CGGCAGATCG 0.865116 -135 CTCGGCCCAATGGCATGATCCGGCGGACCCATC 16 40 0 TGGCAGATCG 0.727564 -105 TAGCTAGTATCGGGAGCGTACTGTGATCTGTAA 16 98 1 CGGGACGTCG 0.848263 -47 TCCCTGGGCTGGCGGTGTTACAGATCACAGTAC 16 115 0 GGCGGGTTCG 0.382813 -30 TTGGTATAGCGGGCCGGCAACGCGCCGGACACA 17 159 1 GGGCCGCACC 0.719558 -55 GCCACGGCGTTGGCATGATTCGCACCGGGACTC 18 83 1 TGGCAGATCC 0.592371 -69 TCGTTACTGGCGGGTAGCTTCTGAAACGGTTCA 19 55 1 CGGGTGCTCG 0.771992 -220 TGACACGCTGTGCCATGGTCGAGTTAGCACACC 19 169 1 TGCCAGGTGG 0.701281 -106 CGGTGTCAACGGCGCAGCTTCACTGGTGTGCTA 19 193 0 GGCGCGCTCC 0.929609 -82 GCGCTGACTACGCGCTGCTCCGGGGAAACGTAT 21 46 1 CGCGCGCTCG 0.976923 -149 AGCCGCGGCACGGGATGCTGCCGTCCGTATTCG 21 114 0 CGGGAGCTCG 0.547689 -81 GGATCACGTCCGGCCAGCCGCGGCACGGGATGC 21 129 0 CGGCCGCCCG 0.465968 -66 AGCCTATCCGGGCGACGATGCGCGCCGCAGCGA 24 19 1 GGCGAGATCC 0.726014 -138 GTTGGCCGGGGGCCCTGTTAGGGTGCCGGTACG 24 71 1 GGCCCGTTGG 0.684485 -86 CGGCGCAGACCGGGCCGCTTCGACTCAGGAAGC 26 79 1 CGGGCGCTCA 0.455027 -119 AGGTTAGCACTGCCCTGTTTCGCGACGGAGATC 26 112 0 TGCCCGTTCC 0.665257 -86 AACAGGGCAGTGCTAACCTACCGGTTGGTTGGT 26 126 1 TGCTACCTCG 0.135661 -72 CTACGAGCTGTGCGAACATCCGCTCAACGATCA 27 38 1 TGCGACATCC 0.45594 -149 ATCAGTAGTAGGCCCGGGTTCCCGGCCAGCGTT 27 67 1 GGCCCGGTCC 0.905549 -120 CCGGGTTCCCGGCCAGCGTTGTCATCCGGGTAC 27 80 1 GGCCACGTGC 0.456297 -107 CTGCTGGCGGTGCCGGGCTCCGCGGCGCAA 28 8 0 TGCCGGCTCC 0.49554 -293 GCCTCGCGGATGCCCTGATCGTCGTTGATTTCC 28 42 1 TGCCCGATGC 0.60721 -259 ACGACCACCTTGGCATGATCCTGGTCCACGAGG 28 73 0 TGGCAGATCG 0.727564 -228 TACCACTCGATGGCAACGTCCAGGTCGGCGACC 28 108 1 TGGCACGTCG 0.681656 -193 GCGTAGTGGTCGCGACCATAGTCCCGCCTCCTC 29 54 0 CGCGACATGC 0.464456 -247 CCTTCGTCGTCGCGCTCGATGTGGTGATCGCCG 29 127 0 CGCGCCGAGG 0.5967 -174 CGCGCTGGTTCACGCTTCGTGAT 29 288 0 CGCGCGGTCC 0.945892 -13 GCTTGAACGCTGCGAGCGAGCCCATGTAGAGCG 30 54 1 TGCGACGACC 0.262437 -247 TGTGAGCCCATGGCAAGTTGGCCCACCGATCGG 30 99 0 TGGCAGTTGC 0.234028 -202 TCATCGTCCAGGCGACGGTGGCCTGAGCGGCAG 30 157 1 GGCGAGGTGC 0.481075 -144 CATCCTCTTGCGGCATGGTTGCCGCAGGGAGTG 30 203 1 CGGCAGGTGC 0.71974 -98 GTCGGCAACCTGGCCCGCTGCGGGTTGGGTTCG 30 248 1 TGGCCGCTCG 0.929819 -53 CGAATTTGGTTGCGCCGCTTGGGGCGTCGCGAG 32 78 1 TGCGCGCTGG 0.873457 -223 CCTGGCTGAACGGGATCCTCCAGCCAGGGGATT 32 120 0 CGGGACCTCG 0.869202 -181 AAATCCTTCGGGCGAAGGTACCCGAAGGTTGTC 33 34 1 GGCGAGGTCC 0.816764 -37 CGGGTTCGCTTGCGCTGTTTGAGTT 34 3 0 TGCGCGTTGG 0.610756 -49 CACCCGAACTCGGTCGGGTTCGCTTGCGCTGTT 34 17 0 CGGTCGGTCC 0.387558 -35 TGTCAAGCCACGCCACCATGCTGACCTGCTATT 35 218 0 CGCCACATCG 0.780299 -83 GGGCGCAGATCCCCCGCGACACGG 36 2 1 GGCGCGATCC 0.849638 -257 CGATCAACTTCGGCTCGCAGCGGTTTCCCAGGC 36 132 1 CGGCTGCACG 0.443624 -127 CCTTAGCGTCGGCGCTGGTGGTGCGGCGCTCAC 36 175 0 GGCGCGGTGG 0.88332 -84 GTGGCGGTCGTGGCAGCATTGAGTTCG 40 5 0 TGGCACATGG 0.332958 -48 CGAGCACCAACGCGACCCTCGTGCAGCAGCTGA 42 215 1 CGCGACCTGG 0.777887 -86 TGGGGCCGTACCGGTTGGGCCCCA 43 2 1 GGGGCGTACG 0.528528 -36 CCGTACCGGTTGGGCCCCATCTGAAGGTGAGC 43 16 1 TGGGCCCACG 0.60811 -22 CCGATTCGCGCGGGCGGAAAGCGTTGGTCTGCA 44 60 1 CGGGCGAAGG 0.603105 -155 ACTCCGCCGGCGGGCCGTTGCAGACCAACGCTT 44 78 0 CGGGCGTTCG 0.88804 -137 TACTGGGTTTTGGCCCGGTCCGGGCTGGATGTT 44 180 1 TGGCCGGTCG 0.909547 -35 AGCTTAACTTGGCCAGGTTGCCCGCGGTGTCGA 48 91 0 GGCCAGTTCC 0.424301 -146 GACCCTGTATCGGGGAGATCCCGGT 48 222 1 CGGGGGATCG 0.603128 -15 AAGGCCCGGAAGGAGCACATGATCA 49 3 1 GGCCCGAAGG 0.503032 -126 GTGGGGGTACCGCCCGCTTGCGGGGGAGAGGTG 49 39 0 CGCCCCTTCG 0.807225 -90 CTCATCGCTGCGGCCCCCTCGTCGCTTCGCGGC 49 72 1 CGGCCCCTGC 0.77229 -57 TTCCGCCCAGCTCGGCGGCCCGTTGC 50 4 1 CGCCCGCTGC 0.900514 -188 CAAACCACATGGCCGTCCTCCTCGTTGACGGTC 52 41 0 GGCCGCCTCC 0.392289 -196 GTCGCCGCCGCGGCCAGCATCTCCGGGTTCACC 52 78 0 CGGCCGCACC 0.817353 -159 GCGACAGACTTGGGCGGCATCAGGTCAGGGATC 52 106 1 TGGGCGCACG 0.773363 -131 GATCCTTTCCGGGCTTGTTGCGGACTGGCAGGA 53 11 0 GGGCTGTTCG 0.296614 -27 AGACACTCGACGCGATCCACGTGGCGACCGCGG 54 46 1 CGCGACCAGG 0.476659 -176 GTGCGACAGCCGCCATCTTCCTGTGGTAGGTGA 54 109 0 CGCCACTTCG 0.658598 -113 TTACAATTTCCGGGCCGGAACGCACAAGTGGGC 54 189 1 CGGGCGGACC 0.780225 -33 AACGCACAAGTGGGCGGGTAGCGAG 54 207 1 TGGGCGGTGG 0.811915 -15 TTGGACGTATTGGGCGGGTGCTGAATTATGATC 56 16 0 TGGGCGGTCG 0.913123 -285 TTCGTGGCCACGCGGTGCTTCGCCTTTTTGCCC 56 84 0 CGCGGGCTCC 0.721298 -217 AAGCACCGCGTGGCCACGAACGCCGGGAGGGAC 56 97 1 TGGCCCGACC 0.379944 -204 GGGACAATCTCGGGCGGCTAGGGCTTCTCGCGG 56 125 1 CGGGCGCTGG 0.934804 -176 GCCCTCCGACCGCGAACATTCGGGGATGGCAGC 56 195 1 CGCGACATCG 0.795254 -106 CATTCGGGGATGGCAGCAACCTGGTAGCACCCT 56 211 1 TGGCACAACG 0.230381 -90 GACTACCCGCGGCGACGCTGCAGATCATCGCCC 56 248 0 GGCGAGCTCG 0.916959 -53 AGTCGCCGCCCGGGCGGCTACAGTCTGAAACGC 56 277 1 CGGGCGCTCG 0.972147 -24 TCACACCCGACGGGCAGAAAGAGGTGGCGGCCG 57 43 1 CGGGCGAAGG 0.603311 -31 CGCACAGCCCGGCCCAGGTGCAGGATCGAGGGG 60 135 0 GGCCCGGTCG 0.946326 -166 GTGCGGGCAAGGCGTCCATCCAGCGCCAGCAAC 60 163 1 GGCGTCATCG 0.315131 -138 GGGCATTAGATGCGACGTTGCTGGCGCTGGATG 60 179 0 TGCGAGTTCG 0.641464 -122 AGCGCTTGCTCGGCCAGCTGCGACCTCGATGGG 60 259 0 CGGCCGCTCA 0.444072 -42 ***** *** * * Masking position 2 Map Score: 109.614 Number of sites scoring better than the average of aligned sites = 39253 Number in coding regions = 36579 Number in noncoding regions = 2674 Number of orfs with sites within 600 bp upstream = 1233 Fraction of orfs with sites within 600 bp upstream = 0.19804 Motif number 5 GCTATCCGACGATCAGCAGCGCAACCATGG 1 27 1 GATCAGCAGC 0.246942 -75 CTACGCTTCGGGGCCGCCGGTTAGGTCTCG 2 12 0 GGGCCGCCGG 0.719277 -77 GGATATATAAGGTCAGTCGGATGCGCTCG 4 10 0 GGTCAGTCGG 0.391221 -85 CGAGCGCAGCGATGAGGAGGAGCGGCGCAT 8 79 1 GATGAGGAGG 0.878952 -20 CACCACGCTTGCGGCGGCGGGCGCGACGAT 12 100 0 GCGGCGGCGG 0.897363 -201 TCGCCCCCGGGGAGTGGCGGTTTCTTGTCC 12 186 0 GGAGTGGCGG 0.39075 -115 GGCGCCGCAGGCTGAGGCGGCCTCCGGGTC 12 277 1 GCTGAGGCGG 0.971303 -24 CTGCGACCCGGAGGCCGCCTCAGC 12 287 0 GACCCGGAGG 0.789285 -14 CCAATGGCATGATCCGGCGGACCCATCGGC 16 37 0 GATCCGGCGG 0.951868 -108 TCCGGTGAACGCCGAGGTGGAACTTAAGCG 17 113 1 GCCGAGGTGG 0.802066 -101 CCGGATCCGCAGGACGTCGATCC 19 4 1 GATCCGCAGG 0.809369 -271 CACCAGTGAAGCTGCGCCGTTGACACCGCC 19 198 1 GCTGCGCCGT 0.706222 -77 ATTTGCTGCTGGTGCGGAGGATTAGGCA 21 9 0 GGTGCGGAGG 0.976838 -186 GTCAACGGTAGGTGCCGCGGGGCTTGAAG 22 10 0 GGTGCCGCGG 0.800863 -22 GCAAGGTATCGCTGCGGCGCGCATCGTCGC 24 30 0 GCTGCGGCGC 0.784156 -127 GCCCCCGCGGGCACCGCTGGGCGAGCCACG 27 126 1 GCACCGCTGG 0.628939 -61 TTGCGCCGCGGAGCCCGGCACCGC 28 5 1 GCCGCGGAGC 0.674767 -296 TTTCGGGTGCGCTGAGGAGGTAGTCATAAC 28 274 1 GCTGAGGAGG 0.948956 -27 TCACGTGCCAGCACCGGAGGAGGCGGGACT 29 38 1 GCACCGGAGG 0.863193 -263 CCGCATTATGGGACAGCAGAACCGGCCTCG 31 53 0 GGACAGCAGA 0.101735 -121 GGGCGTAGGCGCTGCGGCGTGCACGGCTTG 32 151 1 GCTGCGGCGT 0.859893 -150 GGTTCTTCTTGTTCAGGTGGCATCAATACG 32 192 0 GTTCAGGTGG 0.288287 -109 CTACGGAGGCGATGCGCAGGTCAGTTTATC 35 117 0 GATGCGCAGG 0.859451 -184 CGCCTCCGTAGCTCAGGTGGATAGAGCAAG 35 136 1 GCTCAGGTGG 0.890902 -165 CGGAAGCTTTGGTGCGGCCGGCGATCAACT 36 111 1 GGTGCGGCCG 0.680971 -148 CGGCGCTGGTGGTGCGGCGCTCACAGCACA 36 169 0 GGTGCGGCGC 0.922441 -90 GTGATCGCGAGCTGAGGAGACGGT 36 245 1 GCTGAGGAGA 0.611654 -14 CGGAAACATCGGTCAGCAGATAGGCTTTAC 39 110 1 GGTCAGCAGA 0.312294 -57 CCAGCGATGTGAACCGGCGAGCCGGGTGAG 39 139 1 GAACCGGCGA 0.294689 -28 CGGCGAGCCGGGTGAGGAGGATCT 39 153 1 GGTGAGGAGG 0.951813 -14 CCTTCACACAGCTCAGCAGTCAAATCCGCG 42 100 0 GCTCAGCAGT 0.299534 -201 TCGTGCAGCAGCTGAGCTGGCGAGGGTTTT 42 233 1 GCTGAGCTGG 0.821296 -68 GAACGCGTGCTGTCCGGCGGG 44 2 0 TGTCCGGCGG 0.50007 -213 GGTCTGCAACGGCCCGCCGGCGGAGTCTGG 44 85 1 GGCCCGCCGG 0.878738 -130 CGCTTGCGGGGGAGAGGTGGCGTGATCATG 49 28 0 GGAGAGGTGG 0.756936 -101 GGGCCGCAGCGATGAGGTGGGGGTACCGCC 49 58 0 GATGAGGTGG 0.821108 -71 GCAACGGGCCGCCGAGCTGGGCGGAA 50 7 0 GCCGAGCTGG 0.612961 -185 CTTCCGGTGCGGTCCGGCGGACACTTATAC 50 140 1 GGTCCGGCGG 0.981688 -52 GGAGATGCTGGCCGCGGCGGCGACAGACTT 52 87 1 GCCGCGGCGG 0.961732 -150 GGAGACGTTGGGTGCGGAGTTGACGGCGAT 54 77 1 GGTGCGGAGT 0.782726 -145 CTGACGGAGGGGTCCCGCGGTTACAATTTC 54 169 1 GGTCCCGCGG 0.73637 -53 TGTCGACGACGATGCGGTGGGGGTACCACT 59 20 1 GATGCGGTGG 0.908197 -45 ACTGGCAACGGGAGAGGAGCGGTT 59 51 1 GGAGAGGAGC 0.450412 -14 CTGCGACCTCGATGGGGTGGGAATCCGGGA 60 245 0 GATGGGGTGG 0.327377 -56 ********** Masking position 1 Map Score: 41.1876 Number of sites scoring better than the average of aligned sites = 19816 Number in coding regions = 18583 Number in noncoding regions = 1233 Number of orfs with sites within 600 bp upstream = 774 Fraction of orfs with sites within 600 bp upstream = 0.124317 Motif number 6 CCCAGAGTTGGCCAGCGCTATCC 1 3 1 CGAGTTGGCC 0.861896 -99 GAGCGCAGCGATGAGGAGGAGCGGCGCAT 8 80 1 AGAGGAGGAG 0.19022 -19 GCGCCGCAGGCTGAGGCGGCCTCCGGGTCGC 12 278 1 CGAGGCGGCC 0.978462 -23 TGCCATTGGGCCGAGTAGACCCAACGACTCC 16 58 1 CGAGTAGACC 0.676247 -87 TGGGTGCTCCCTGGGCTGGCGGTGTTACAGA 16 124 0 CGGGCTGGCG 0.865422 -21 TACCAAGAACCTGAGTCGACCACGCTTAAGT 17 134 0 CGAGTCGACC 0.701767 -80 TCTGCCGAGCAGACGCAAAAGCACC 20 5 1 CGAGCAGACG 0.918654 -77 CCTCAAATGCGCGAGCAGACGCAAAAGCGCC 20 54 0 GGAGCAGACG 0.675239 -28 AAGTCAACGGTAGGTGCCGCGGGGCTTGA 22 13 0 GTAGGTGCCG 0.172969 -19 CTCCAATGGACGGCGCAGACCGGGCCGCTTC 26 69 1 CGCGCAGACC 0.719681 -129 GTGGCTCGCCCAGCGGTGCCCGCGGGGGCTA 27 124 0 CGCGGTGCCC 0.817728 -63 TCAAACTCTTCAGGGGAGGCGAGGCCC 27 170 1 CGGGGAGGCG 0.942898 -17 TTGCGCCGCGGAGCCCGGCACCGCCA 28 6 1 CGCGGAGCCC 0.795841 -295 GTGCCAGCACCGGAGGAGGCGGGACTATGGT 29 42 1 CGAGGAGGCG 0.98859 -259 ATTTCTTCGAAAGAGGTGACGAT 32 288 1 AGAGGTGACG 0.815823 -13 ATTTCTGTTTGTGAGGAGACGTCGACC 33 7 0 GGAGGAGACG 0.859965 -64 ACCTGAGCTACGGAGGCGATGCGCAGGTCAG 35 123 0 CGAGGCGATG 0.468321 -178 ACTCAAACCACGGAGGTGCCCG 35 289 1 CGAGGTGCCC 0.901681 -12 GCCGCACCACCAGCGCCGACGCTAAGGATGG 36 181 1 CGCGCCGACG 0.850872 -78 TGATCGCGAGCTGAGGAGACGGT 36 246 1 CGAGGAGACG 0.970893 -13 TTACGCAGGTGCGGGGTGGCGGTCGTGGCAG 40 22 0 GGGGGTGGCG 0.777623 -31 CGTGCAGCAGCTGAGCTGGCGAGGGTTTTTT 42 234 1 CGAGCTGGCG 0.971217 -67 GCTGGCTTTTCTTAGTCGGCCCATCGACGAG 48 23 0 CTAGTCGGCC 0.260557 -214 GATACAGGGTCCGAGGTGGCCGCCGCCCGCG 48 202 0 CGAGGTGGCC 0.978897 -35 GCTTGCGGGGGAGAGGTGGCGTGATCATGTG 49 26 0 GGAGGTGGCG 0.948317 -103 GGCCGCAGCGATGAGGTGGGGGTACCGCCCG 49 56 0 AGAGGTGGGG 0.424295 -73 CCGCGAAGCGACGAGGGGGCCGCAGCGATGA 49 73 0 AGAGGGGGCC 0.404463 -56 ACTGCATCGTCGGCGGCGGCG 49 118 1 CGCGGCGGCG 0.963152 -11 CAACGGGCCGCCGAGCTGGGCGGAA 50 5 0 CGAGCTGGGC 0.501492 -187 TCAACGCCGACGGAGATGGCG 51 1 0 CGAGATGGCG 0.767871 -41 GAGATGCTGGCCGCGGCGGCGACAGACTTGG 52 88 1 CGCGGCGGCG 0.97841 -149 AGAGGACGCGCATAGGCGGCGCTGATCCCTG 52 131 0 CTAGGCGGCG 0.8491 -106 CAGGTCACCGCAGAGGACGCGCATAGGCGGC 52 142 0 CGAGGACGCG 0.740192 -95 CACGTGGCGACCGCGGAGACGTTGGGTGCGG 54 63 1 CGCGGAGACG 0.942211 -159 ACGTTGGGTGCGGAGTTGACGGCGATGATCA 54 81 1 CGAGTTGACG 0.837715 -141 CGGCGACTACCCGCGGCGACGCTGCAGATCA 56 254 0 CGCGGCGACG 0.937484 -47 GACGGGCAGAAAGAGGTGGCGGCCGTGGCAA 57 51 1 AGAGGTGGCG 0.920038 -23 TCGCAGCTGGCCGAGCAAGCGCTTGGTTGAT 60 269 1 CGAGCAAGCG 0.394238 -32 * ********* Masking position 5 Map Score: 49.2694 Number of sites scoring better than the average of aligned sites = 15209 Number in coding regions = 14432 Number in noncoding regions = 777 Number of orfs with sites within 600 bp upstream = 555 Fraction of orfs with sites within 600 bp upstream = 0.0891423 Motif number 7 CACTACGCTTCGGGGCCGCCGGTTAGGTCT 2 14 0 CGGGGCCGCC 0.850603 -75 AGCGGGCCGTAGGGTGTGCCAG 9 24 1 AGGGTGTGCC 0.900858 -12 AGCAGAAGCGTGGGCCTGGCCCCCCAACC 12 10 0 TGGGCCTGGC 0.783126 -291 TCGACGGCTGTGGGTGCGGCTTGAGAGGCT 12 51 0 TGGGTGCGGC 0.942623 -250 GGTCTGTTGCTGGGCGCGGCCGCGATCTTC 12 133 1 TGGGCGCGGC 0.918705 -168 GATCGCCCCCGGGGAGTGGCGGTTTCTTGT 12 188 0 GGGGAGTGGC 0.839119 -113 GTGTGGGGGTCGGGCGCGCCAATACACGTA 13 30 1 CGGGCGCGCC 0.890402 -112 GATCAGTTCGGGGGATCGGCCGTTGAGGGC 13 109 0 GGGGATCGGC 0.756324 -33 GCCGGGCCGATGGGTCCGCCGGATCATGCC 16 32 1 TGGGTCCGCC 0.929977 -113 CCGCCAGCCCAGGGAGCACCCA 16 133 1 AGGGAGCACC 0.650038 -12 CCGGGACTCAAGGGTGAGCCTGAGGTACAC 18 107 1 AGGGTGAGCC 0.732388 -45 CGTCGATCCGTGGGTTTACCTGCGGATTTG 19 25 1 TGGGTTTACC 0.641784 -250 GCAAGTGAAATGGGTGGACCAGCGTTGACA 19 144 1 TGGGTGGACC 0.666558 -131 TGGGTCAGCCTATATAGCCT 25 17 0 TGGGTCAGCC 0.742138 -10 GCTGACCTCCTGGGGCCGGCAAAGCACCCG 26 14 1 TGGGGCCGGC 0.88789 -184 ATTCCTCCCTTGGGATCGGCGACGCTACCA 26 155 0 TGGGATCGGC 0.841767 -43 CGGGCACCGCTGGGCGAGCCACGATCTAGA 27 133 1 TGGGCGAGCC 0.81678 -54 GAGGCACTGCTGGCGGTGCCGGGCTCCGCG 28 17 0 TGGCGGTGCC 0.463362 -284 CCTGAGCGGCAGGGGTTGCCTTATTCATCC 30 178 1 AGGGGTTGCC 0.808546 -123 TGGTTGCCGCAGGGAGTGCCGGTAAGTCTG 30 218 1 AGGGAGTGCC 0.872969 -83 CGGGATCCCAAGGGACTGCCGGAAGCGAAT 32 53 1 AGGGACTGCC 0.753203 -248 GAAGCGAATTTGGTTGCGCCGCTTGGGGCG 32 74 1 TGGTTGCGCC 0.427236 -227 CCTCCAGCCAGGGGATTGCCGAATCTCTCG 32 107 0 GGGGATTGCC 0.802572 -194 CATCGACGAGCGGGGTTGCCGA 48 3 0 CGGGGTTGCC 0.797961 -234 GTGTGGATCCGGGGTTAGGCTGGCTTTTCT 48 42 0 GGGGTTAGGC 0.470717 -195 GTGCTTTTAAGGGGTTTGCCAGCGGTGAAT 48 151 1 GGGGTTTGCC 0.84314 -86 AGCGATGAGGTGGGGGTACCGCCCGCTTGC 49 51 0 TGGGGGTACC 0.819567 -78 GCTTCGCGGCTGGGGGTGCCCCCACTGCAT 49 95 1 TGGGGGTGCC 0.958944 -34 TGTGGAATGTGGGGTGGAGCAACGGGCCGC 50 25 0 GGGGTGGAGC 0.390511 -167 CCAGCATCTCCGGGTTCACCAATGCAAACC 52 68 0 CGGGTTCACC 0.495821 -169 GCATCAGGTCAGGGATCAGCGCCGCCTATG 52 122 1 AGGGATCAGC 0.304054 -115 CCGTGTAATTTGGGATGGGCAAAAAGGCGA 56 68 1 TGGGATGGGC 0.646462 -233 GACGATGCGGTGGGGGTACCACTCACTGGC 59 27 1 TGGGGGTACC 0.819567 -38 ATCCTGCACCTGGGCCGGGCTGTGCGGGCA 60 142 1 TGGGCCGGGC 0.633037 -159 ********** Masking position 3 Map Score: 34.0751 Number of sites scoring better than the average of aligned sites = 5788 Number in coding regions = 5290 Number in noncoding regions = 498 Number of orfs with sites within 600 bp upstream = 398 Fraction of orfs with sites within 600 bp upstream = 0.0639255 Motif number 8 GATATATAAGGTCAGTCGGATGCGCTCG 4 6 0 GTCAGCGGGC 0.865888 -89 TTTCGCCTCGGTACAGCGATGGCTTTGGCAGGC 5 47 0 GTACACGAGC 0.344966 -46 GTTCGTCGGGAGCTAATCGGCCC 10 13 0 GTTCGCGGGC 0.994108 -13 CGACGATCCGGTTCATCGGTGGCTCCTCGACGG 12 74 0 GTTCACGGGC 0.956137 -227 AAGCGTGGTGGTTGGTCTGTTGCTGGGCGCGGC 12 120 1 GTTGGCTGGC 0.857327 -181 CGTATCGTGTGGGGGTCGGGCGCGCCAATACAC 13 24 1 GGGGGCGGGC 0.942648 -118 CAACGACTCCGTCCGTCGATAGCTAGTATCGGG 16 79 1 GTCCGCGAGC 0.926674 -66 CCACCTCGGCGTTCACCGGAAGCGAACACTGTC 17 100 0 GTTCACGGGC 0.956137 -114 CTGGACGACGGTAGGGCGTCAGCGTTTTCGGCA 19 227 1 GTAGGCGTGC 0.790085 -48 CAACCAACAGGTTGGCCGGGGGCCCTGTTAGGG 24 61 1 GTTGGCGGGC 0.991701 -96 TTTCGCTACGGGACGCCGGGTGCTTTGCCGGCC 26 27 0 GGACGCGGGC 0.965466 -171 TAACCTACCGGTTGGTTGGTAGCGTCGCCGATC 26 139 1 GTTGGTGGGC 0.875042 -59 ACTACTGATCGTTGAGCGGATGTTCGCACAGCT 27 43 0 GTTGACGGGT 0.305687 -144 GCAACGTCCAGGTCGGCGACCGCAATACCGACG 28 120 1 GGTCGCGAGC 0.906301 -181 GAAAACTTGAGGTCGTCGTAGGCAAGGCCTTCG 29 154 0 GGTCGCGTGC 0.926442 -147 CGGGTCACACGTTCGAGGTGCGC 31 1 0 GTTCGGGTGC 0.776727 -173 CCAGTGTTGCGGCGAGCGGAAGCTTTGGTGCGG 36 95 1 GGCGACGGGC 0.888162 -164 AGCCGAAGTTGATCGCCGGCCGCACCAAAGCTT 36 114 0 GATCGCGGGC 0.912063 -145 TGTCCATAGTGTCCGACGGTAGCCTTCACACAG 42 119 0 GTCCGCGGGC 0.992818 -182 GACAGCACGCGTTCGACGGTAGCACTCGGCCAG 44 18 1 GTTCGCGGGC 0.994108 -197 CGCGAATCGGGGTCGACGGCTGGCCGAGTGCTA 44 37 0 GGTCGCGGGG 0.817054 -178 GGCGGAAAGCGTTGGTCTGCAACGGCCCGCCGG 44 72 1 GTTGGCTGAC 0.309557 -143 GGTCCGAGGTGGCCGCCGCCCGCGCGAGACGGT 48 193 0 GGCCGCGCGC 0.822939 -44 CCCACTGCATCGTCGGCGGCGGCG 49 115 1 CGTCGCGGGC 0.817054 -14 TTCCGGTGCGGTCCGGCGGACACTTATACCTGG 50 141 1 GTCCGCGGAC 0.911612 -51 GAACGCACAAGTGGGCGGGTAGCGAG 54 206 1 GTGGGGGGGC 0.819497 -16 GCTTGGACGTATTGGGCGGGTGCTGAATTATGA 56 18 0 ATTGGCGGGC 0.773125 -283 AATGTTCGCGGTCGGAGGGCGACGCGACGTGTT 56 182 0 GTCGGGGGAC 0.558775 -119 CTTTCTGCCCGTCGGGTGTGAGCTTGTCAAGAA 57 31 0 GTCGGTGTGC 0.405819 -43 CGGGAATTCGGTACGAGGGATGCGCCCTTCGCT 60 217 0 GTACGGGGGC 0.885357 -84 ***** *** ** Masking position 8 Map Score: 42.4522 Number of sites scoring better than the average of aligned sites = 6036 Number in coding regions = 5630 Number in noncoding regions = 406 Number of orfs with sites within 600 bp upstream = 345 Fraction of orfs with sites within 600 bp upstream = 0.0554128 Motif number 9 CACCGATGAACCGGATCGTCGCGCCCGCCGCCGC 12 86 1 CCGACGGCGC 0.865972 -215 CCTGCGGCGCCCGGGTCGCGGGGCTAGCTACGGT 12 254 0 CCGGCGGGGC 0.912642 -47 CCGGAGGCCGCCTCAGCCTGCGGCGCCCGGGTCG 12 270 0 CCCACCCGGC 0.646877 -31 GTCGAAGGGTACACAGAGAACGGCCCCCTTTTTC 15 27 0 ACCAAGCGGC 0.31202 -53 ACGGACTCTACTCCAATGGACGGCGCAGACCGGG 26 59 1 CTCATGCGGC 0.769533 -139 ATCGCATGGCCCTGACTGTGGTGCC 26 183 1 CCGATGGTGC 0.61627 -15 GAGCCACGATCTAGATTGCTGGTCAAACTCTTCA 27 148 1 CTGATGGGTC 0.258724 -39 CGGGCGTGGACTTGATCGGTCGTCATCACACAAC 28 192 1 CTGACGCGTC 0.712759 -109 GGTAGAAATGCCGGATTTCGCGGCAGCCGCAGGA 29 185 0 CCGATTCGGC 0.861778 -116 TTGGTACCAAACCGATCGGTGGGCCAACTTGCCA 30 88 1 ACGACGGGGC 0.877989 -213 GCGACGGTGGCCTGAGCGGCAGGGGTTGCCTTAT 30 168 1 CCGACGAGGG 0.856816 -133 AGGTTGCCGACCAGACTTACCGGCACTCCCTGCG 30 225 0 CCGATTCGGC 0.86178 -76 GGTGTTGACACCCGAGCGCTCGGCGCTTACGCTT 31 110 1 CCGACGCGGC 0.717528 -64 GCGCCTACGCCCTGGCTGAACGGGATCCTCCAGC 32 129 0 CCGGTGCGGG 0.81909 -172 CCCGGCACGACTCGAACGTGCGACCTAGGGATTA 35 173 0 CTGACGCGAC 0.712143 -128 TGTGAAGAGTCCGGACCGATCGCGAACGCATCGC 36 37 0 CCGACGCGCG 0.63467 -222 GACGCTAAGGATGGAACGCACGGCATCTTCTGAC 36 198 1 ATGACGCGGC 0.81137 -61 GGTCCCTAGACGCACCGCGGGGGCAATGGTATT 37 10 1 ACCACGGGGG 0.381187 -73 TTCCGGCCTGCCAGACTGGACGGGCACACTGGAC 39 81 0 CCGATGCGGG 0.972547 -86 ATGGACAAGGCCGGAAAGCCCGGGATGCTCGTAG 42 145 1 CCGAAGCGGG 0.859801 -156 CACACACGATCCCGATCGGACTGTTCGACACCGC 48 67 1 CCGACGCTGT 0.272566 -170 CCAAGTTAAGCTCGATTGCCCGGCTCTAGCTGTT 48 112 1 CTGATGCGGC 0.945898 -125 CGACAACCGTCTCGCGCGGGCGGCGGCCACCTCG 48 188 1 CTGCCGCGGC 0.849146 -49 GGGGGTACCGCCCGCTTGCGGGGGAGAGGTGGCG 49 36 0 CCGCTGGGGG 0.616478 -93 TAAGTGTCCGCCGGACCGCACCGGAAGCAGAAGG 50 133 0 CCGACGCCGG 0.819564 -59 GCTCACGGTACGGGACCTGGCGGCCCAAGACACT 54 19 1 CGGACTCGGC 0.617515 -203 CGCCAGGCCACGTGATTGTGCGACAGCCGCCATC 54 125 0 CGGATGCGAC 0.316117 -97 CGCGGGAAGGCCCGAACGTACGGCGTTTCAACAC 56 153 1 CCGACGCGGC 0.988797 -148 TGCTGCCATCCCCGAATGTTCGCGGTCGGAGGGC 56 195 0 CCGATGCGCG 0.709038 -106 GCCAGAATGCCCAGAACGCTAGGCACTCTCCGCC 60 66 1 CCGACGAGGC 0.935299 -235 GGCCCAGGTGCAGGATCGAGGGGCTTGGTACCTG 60 124 0 CAGACGGGGC 0.75219 -177 GACGCCTTGCCCGCACAGCCCGGCCCAGGTGCAG 60 145 0 CCCAAGCGGC 0.828626 -156 ** ** ** **** Masking position 1 Map Score: 33.413 Number of sites scoring better than the average of aligned sites = 8908 Number in coding regions = 8297 Number in noncoding regions = 611 Number of orfs with sites within 600 bp upstream = 481 Fraction of orfs with sites within 600 bp upstream = 0.0772567 Motif number 10 CAACCGGGTGACTAGGATCGCGGTTATCAC 4 73 1 ACTAGGATCG 0.697579 -22 GGTTAGTCGAACGAGGATCGGGATGGTGGC 5 14 0 ACGAGGATCG 0.977598 -79 GCCACCGATGAACCGGATCGTCGCGCCCGC 12 84 1 AACCGGATCG 0.713104 -217 ATCAGTGCTCAACCGGGTCGAGTACGGTAA 12 225 1 AACCGGGTCG 0.495368 -76 ATAACACGCGAAGAGGATCACATTAG 15 64 1 AAGAGGATCA 0.791099 -16 CTGTTTCGCGACGGAGATCGCTTCCTGAGT 26 101 0 ACGGAGATCG 0.677212 -97 GAGGAAATCAACGACGATCAGGGCATCCGC 28 47 0 ACGACGATCA 0.78036 -254 TTCCTCGTGGACCAGGATCATGCCAAGGTG 28 71 1 ACCAGGATCA 0.893842 -230 CACATGGTTGACGGCGATCACCACATCGAG 29 116 1 ACGGCGATCA 0.763679 -185 CGTCGCCTGGACGATGATCGGCTACACGCT 30 144 0 ACGATGATCG 0.85355 -157 ATCCCCGGTTACCCGGGTCACACGTTCGAG 31 17 0 ACCCGGGTCA 0.782953 -157 ACCCTCGCGGATCACCCGAACTCG 34 38 0 TCGCGGATCA 0.869387 -14 TGTACGTGTGTCGAGGATCACACAATAACC 35 18 1 TCGAGGATCA 0.859863 -283 TAGGCCTGGCACCGTGATCGCAATACCAAT 39 26 0 ACCGTGATCG 0.644284 -141 CGGTCCTGTTACGGTGATCGA 41 36 1 ACGGTGATCG 0.841297 -11 GCCGTCACGCTCGCGGATCAAGACTGACAC 42 70 1 TCGCGGATCA 0.869387 -231 CAGCTGCTGCACGAGGGTCGCGTTGGTGCT 42 217 0 ACGAGGGTCG 0.945159 -84 TCCAGAGCAATAGAGGATCACACAACA 42 284 1 TAGAGGATCA 0.485309 -17 CCACCCTCTCACGGGGGTCAACGCCGACGG 51 19 0 ACGGGGGTCA 0.898499 -23 CGCGGTCGCCACGTGGATCGCGTCGAGTGT 54 48 0 ACGTGGATCG 0.859952 -174 TAATCGGACTACGCGGATCG 60 1 0 ACGCGGATCG 0.979313 -300 ********** Masking position 8 Map Score: 18.11 Number of sites scoring better than the average of aligned sites = 1835 Number in coding regions = 1683 Number in noncoding regions = 152 Number of orfs with sites within 600 bp upstream = 141 Fraction of orfs with sites within 600 bp upstream = 0.022647 Motif number 11 CTCTGGTTCTCGTGATGCCGGTG 3 3 0 CGTGAGCCGG 0.907858 -40 CACGAAACACCGGACGAGTATGA 7 3 1 CGAAAACCGG 0.739246 -28 TAGCTAGCCCCGCGACCCGGGCGCCGCAGGC 12 258 1 CGCGACCGGG 0.909944 -43 TCAGGTTCTTGGTATAGCGGGCCGGCAACGC 17 151 1 GGTATGCGGG 0.551742 -63 CTGTGTCCGGCGCGTTGCCGGCCCGCTATAC 17 162 0 CGCGTGCCGG 0.781792 -52 TTGTGGGATACGTTTCCCCGGAGCAGCGCGT 21 55 0 CGTTTCCCGG 0.836203 -140 GCTGGCCGGACGTGATCCGAGGGTGTGGGTC 21 144 1 CGTGACCGAG 0.552402 -51 CGTTTCGCTACGGGACGCCGGGTGCTTTGCC 26 31 0 CGGGAGCCGG 0.756852 -167 GTAGTAGGCCCGGGTTCCCGGCCAGCGTTGT 27 71 1 CGGGTCCCGG 0.872267 -116 TAAGGTTTATCGTGTACCCGGATGACAACGC 27 95 0 CGTGTCCCGG 0.955802 -92 GCGGCTGCCGCGAAATCCGGCATTTCTACCA 29 189 1 CGAAACCGGC 0.402165 -112 GTCCATCCCCGGTTACCCGGGTCACACGTTC 31 20 0 GGTTACCGGG 0.602263 -154 TACGCTTTCTCGTATAACGGGTGATAAGTAC 31 137 1 CGTATACGGG 0.642621 -37 TGATAAGTACCGTATTGCGGGAGTAG 31 158 1 CGTATGCGGG 0.808192 -16 CACGTTACCACGAAGAACCGGCCTCGCGATG 32 21 0 CGAAGACCGG 0.277799 -280 GCATTCTCGACGAATGCCGGGTTCTTCTTGT 32 210 0 CGAATCCGGG 0.921268 -91 GCATCGCAACCGTGTCGCGGGGGATCTGCGC 36 13 0 CGTGTGCGGG 0.862054 -246 AATACCAATACGAAAGACGGGTTG 39 4 0 CGAAAACGGG 0.694667 -163 GATGTGAACCGGCGAGCCGGGTGAGGAGGAT 39 144 1 GGCGACCGGG 0.74695 -23 GGACAAGGCCGGAAAGCCCGGGATGCTCGTA 42 147 1 GGAAACCCGG 0.843486 -154 GAAAAGCCAGCCTAACCCCGGATCCACACAC 48 43 1 CCTAACCCGG 0.456006 -194 AAGTTAAGCTCGATTGCCCGGCTCTAGCTGT 48 114 1 CGATTCCCGG 0.836203 -123 CCTGTATCGGGGAGATCCCGGT 48 225 1 GGAGACCCGG 0.888801 -12 GGTTTGCATTGGTGAACCCGGAGATGCTGGC 52 68 1 GGTGACCCGG 0.888801 -169 CGCGTGGCCACGAACGCCGGGAGGGACAATC 56 103 1 CGAACCCGGG 0.667636 -198 CACTCTCCGCCGATACCCCAGATGTCTCCCG 60 89 1 CGATACCCAG 0.266348 -212 TCCCTCGTACCGAATTCCCGGATTCCCACCC 60 230 1 CGAATCCCGG 0.935819 -71 ***** ***** Masking position 8 Map Score: 26.8125 Number of sites scoring better than the average of aligned sites = 5089 Number in coding regions = 4677 Number in noncoding regions = 412 Number of orfs with sites within 600 bp upstream = 349 Fraction of orfs with sites within 600 bp upstream = 0.0560553 Motif number 12 CGTCGGATAGCGCTGGCCAACTCTGGG 1 7 0 CGCTGGCAAC 0.508971 -95 ATCTCCTCGCCGCACAGCGGCGGTGATCGCG 1 73 0 CGCACACGGC 0.609813 -29 CTCATCGCTGCGCTCGGCATCGTCGCCGGCG 8 64 0 CGCTCGCATC 0.709475 -35 CGCCACTCCCCGGGGGCGATCCGTCGTCATC 12 197 1 CGGGGGGATC 0.53984 -104 CTGCGACCCGGAGGCCGCCTCAGCCTGCG 12 282 0 CGGAGGCGCC 0.718214 -19 CCACACGATACGGAAGGCAGCTGAA 13 5 0 CGGAAGCAGC 0.577691 -137 TAGCTATCGACGGACGGAGTCGTTGGGTCTA 16 73 0 CGGACGAGTC 0.566552 -72 TTCTTGGTATAGCGGGCCGGCAACGCGCCGG 17 156 1 AGCGGGCGGC 0.893956 -58 CCGGATCCGCAGGACGTCGATCCGTGGG 19 8 1 CGCAGGCGTC 0.963338 -267 GCAAAAAGTCCGCAGGCCGTTGCCGAAATTC 19 113 1 CGCAGGCGTT 0.589044 -162 GGACGACGGTAGGGCGTCAGCGTTTTCGGCA 19 229 1 AGGGCGCAGC 0.629236 -46 CCCACGAATACGGACGGCAGCATCCCGTGCC 21 110 1 CGGACGCAGC 0.905376 -85 CGCGGCTGGCCGGACGTGATCCGAGGGTGTG 21 140 1 CGGACGGATC 0.337056 -55 ATCGCTGCGGCGCGCATCGTCGCCCGGATAG 24 22 0 CGCGCACGTC 0.539073 -135 TGCCGGCCCCAGGAGGTCAGCGCC 26 4 0 AGGAGGCAGC 0.681267 -194 CGGATGACAACGCTGGCCGGGAACCCGGGCC 27 77 0 CGCTGGCGGG 0.377776 -110 TTGCGCCGCGGAGCCCGGCACCGCCAGCA 28 9 1 CGGAGCCGGC 0.574743 -292 GTCGGTATTGCGGTCGCCGACCTGGACGTTG 28 121 0 CGGTCGCGAC 0.569902 -180 TGGACTTGATCGGTCGTCATCACACAACGGT 28 198 1 CGGTCGCATC 0.678652 -103 GGGTGCGCTGAGGAGGTAGTCATAACGACAT 28 278 1 AGGAGGAGTC 0.226 -23 GTTTATCTAACGGTGGCCGTCGAGGAATTTT 35 93 0 CGGTGGCGTC 0.900716 -208 GGAGGCGATGCGCAGGTCAGTTTATCTAACG 35 112 0 CGCAGGCAGT 0.507113 -189 CTGTGGAAATAGCAGGTCAGCATGGTGGCGT 35 211 1 AGCAGGCAGC 0.711946 -90 GCAACCGTGTCGCGGGGGATCTGCGCCC 36 8 0 CGCGGGGATC 0.575652 -251 AAGGATGGAACGCACGGCATCTTCTGACGCG 36 204 1 CGCACGCATC 0.859487 -55 CCATTGCCCCCGCGGTGCGTCTAGGGACC 37 9 0 CGCGGTCGTC 0.441048 -74 GAGTCGTGTACGGAGACCGTC 38 1 0 CGGAGACGTC 0.560212 -115 GTGCGCGGCCCGCGGGTAGGCCTGGCACCGT 39 41 0 CGCGGGAGGC 0.863167 -126 CCCGCCGGACAGCACGCGTTCGA 44 3 1 CGCCGGCAGC 0.666667 -212 CCGCCGCCCGCGCGAGACGGTTGTCGCCGTT 48 183 0 CGCGAGCGGT 0.227386 -54 CCGTCTCGCGCGGGCGGCGGCCACCTCGGAC 48 194 1 CGGGCGCGGC 0.970269 -43 TTCCGCCCAGCTCGGCGGCCCGTTGCTCC 50 9 1 AGCTCGCGGC 0.593262 -183 CACCCTCTCACGGGGGTCAACGCCGACGGAG 51 17 0 CGGGGGCAAC 0.752423 -25 GAGCGTATCGCCCGCGGCGGCACCGCGTC 52 9 0 CCCGCGCGGC 0.533988 -228 ACCGTCAACGAGGAGGACGGCCATGTGGTTT 52 42 1 AGGAGGCGGC 0.84341 -195 CGAGACGCGGCACAGGTCGGCACC 52 223 1 CACAGGCGGC 0.493342 -14 TAGGGCTTCTCGCGGGAAGGCCCGAACGTAC 56 143 1 CGCGGGAGGC 0.863167 -158 TGTTCGCGGTCGGAGGGCGACGCGACGTGTT 56 182 0 CGGAGGCGAC 0.849803 -119 GCAGCGTCGCCGCGGGTAGTCGCCGCCCGGG 56 260 1 CGCGGGAGTC 0.77716 -41 CATATTCTTCCGCGCGTCGTCATAGCCTAAT 60 27 0 CGCGCGCGTC 0.954261 -274 TACCTGATCACGGGAGACATCTGGGGTATCG 60 99 0 CGGGAGCATC 0.505846 -202 ****** **** Masking position 2 Map Score: 46.5063 Number of sites scoring better than the average of aligned sites = 17192 Number in coding regions = 15993 Number in noncoding regions = 1199 Number of orfs with sites within 600 bp upstream = 770 Fraction of orfs with sites within 600 bp upstream = 0.123675 Motif number 13 GCCGCACAGCGGCGGTGATCGCGTACGTCC 1 66 0 GGCGGTGATC 0.892546 -36 GGTAGGGTGACGCCATGACCGCCGGCGACG 8 45 1 CGCCATGACC 0.269196 -54 TCCTCCTCATCGCTGCGCTCGGCATCGTCG 8 70 0 CGCTGCGCTC 0.481675 -29 CGGCGGCGGGCGCGACGATCCGGTTCATCG 12 89 0 CGCGACGATC 0.869759 -212 AGATCGCGGCCGCGCCCAGCAACAGACCAA 12 131 0 CGCGCCCAGC 0.559001 -170 GCCACTCCCCGGGGGCGATCCGTCGTCATC 12 198 1 GGGGGCGATC 0.579466 -103 GCACATATGACGCTGTGATCACACCTGGCG 17 59 1 CGCTGTGATC 0.717165 -155 GCGCTGACTACGCGCTGCTCCGGGGAAACG 21 46 1 CGCGCTGCTC 0.400932 -149 GGCGCTGACCTCCTGGGGCC 26 1 1 GGCGCTGACC 0.932273 -197 TCCAATGGACGGCGCAGACCGGGCCGCTTC 26 70 1 GGCGCAGACC 0.660975 -128 GGTTGGTAGCGTCGCCGATCCCAAGGGAGG 26 152 1 GTCGCCGATC 0.357531 -46 TGATGGCTATGGCTACGAGCTGTGCGAACA 27 26 1 GGCTACGAGC 0.736529 -161 CGGTATTGCGGTCGCCGACCTGGACGTTGC 28 120 0 GTCGCCGACC 0.584709 -181 ACCCGAAAGCCGATCTGACCGACCCGGAGA 28 252 0 CGATCTGACC 0.0757093 -49 AGTGCGTAGTGGTCGCGACCATAGTCCCGC 29 60 0 GGTCGCGACC 0.226654 -241 CCACATCGAGCGCGACGACGAAGGCCTTGC 29 136 1 CGCGACGACG 0.444766 -165 GGACGAGCACAGCGGCGATCACGAAGCGTG 29 271 1 AGCGGCGATC 0.712748 -30 CAAGCTTGAACGCTGCGAGCGAGCCCATGT 30 51 1 CGCTGCGAGC 0.922466 -250 TCGCGATAGCCGCTGTGAGCCCATGGCAAG 30 115 0 CGCTGTGAGC 0.792241 -186 AGAAAGCGTAAGCGCCGAGCGCTCGGGTGT 31 117 0 AGCGCCGAGC 0.70966 -57 CCGAATCTCTCGCGACGCCCCAAGCGGCGC 32 89 0 CGCGACGCCC 0.664938 -212 GGCGACTCTGGGCGTCGACCCATAACGAGG 35 254 0 GGCGTCGACC 0.800081 -47 GGGCGCAGATCCCCCGCGACA 36 2 1 GGCGCAGATC 0.43522 -257 GCGCCAGTGTTGCGGCGAGCGGAAGCTTTG 36 92 1 TGCGGCGAGC 0.788651 -167 CTTTGGTGCGGCCGGCGATCAACTTCGGCT 36 117 1 GCCGGCGATC 0.715444 -142 CCTGGGAAACCGCTGCGAGCCGAAGTTGAT 36 134 0 CGCTGCGAGC 0.922466 -125 AGGCGGGATGTGCTGTGAGCGCCGCACCAC 36 161 1 TGCTGTGAGC 0.258506 -98 CGCGTAACCGCGTTGTGATCGCGAGCTGAG 36 231 1 CGTTGTGATC 0.166907 -28 CAGGCACCAACGCGCCGACCAATTACTACG 42 174 0 CGCGCCGACC 0.97825 -127 ACCACTGACGCGTTACGAGCCCAG 47 13 1 CGTTACGAGC 0.187859 -14 TGAATACAACGGCGACAACCGTCTCGCGCG 48 176 1 GGCGACAACC 0.218627 -61 GTCTCGCGCGGGCGGCGGCCACCTCGGACC 48 196 1 GGCGGCGGCC 0.82713 -41 CCCACCTCATCGCTGCGGCCCCCTCGTCGC 49 67 1 CGCTGCGGCC 0.617277 -62 GGAGCAACGGGCCGCCGAGCTGGGCGGAA 50 10 0 GCCGCCGAGC 0.712376 -182 CATCTCCGTCGGCGTTGACCCCCGTGAGAG 51 14 1 GGCGTTGACC 0.56198 -28 GCGGGCGATACGCTCCGACCGTCAACGAGG 52 25 1 CGCTCCGACC 0.929134 -212 CTGTCGCCGCCGCGGCCAGCATCTCCGGGT 52 83 0 CGCGGCCAGC 0.659244 -154 GCGCATAGGCGGCGCTGATCCCTGACCTGA 52 125 0 GGCGCTGATC 0.844742 -112 GCGCGTCCTCTGCGGTGACCTGGCTGGTAG 52 151 1 TGCGGTGACC 0.667994 -86 GGTGCCGACCTGTGCCGCGT 52 227 0 GGTGCCGACC 0.772318 -10 ACGCGATCCACGTGGCGACCGCGGAGACGT 54 55 1 CGTGGCGACC 0.843699 -167 CGGAGTTGACGGCGATGATCACCTACCACA 54 91 1 GGCGATGATC 0.671471 -131 CGTCGCGTCGCCCTCCGACCGCGAACATTC 56 186 1 CCCTCCGACC 0.559849 -115 ACCCTGGCCGGGCGATGATCTGCAGCGTCG 56 239 1 GGCGATGATC 0.671471 -62 GGCGACTACCCGCGGCGACGCTGCAGATCA 56 254 0 CGCGGCGACG 0.764965 -47 TAGCCGCCCGGGCGGCGACTACCCGCGGCG 56 267 0 GGCGGCGACT 0.532595 -34 TCTGCCCGTCGGGTGTGAGCTTGTCAAGAA 57 31 0 GGGTGTGAGC 0.162202 -43 CATCTAATGCCCCGGTGAGCGAAGGGCGCA 60 200 1 CCCGGTGAGC 0.559289 -101 TTGCTCGGCCAGCTGCGACCTCGATGGGGT 60 257 0 AGCTGCGACC 0.646634 -44 ********** Masking position 7 Map Score: 46.8108 Number of sites scoring better than the average of aligned sites = 21761 Number in coding regions = 20387 Number in noncoding regions = 1374 Number of orfs with sites within 600 bp upstream = 834 Fraction of orfs with sites within 600 bp upstream = 0.133954 Motif number 14 GGTTGAGCACTGATGACGACGGATCGCCCC 12 209 0 TGATGACGAC 0.894344 -92 CGATACGGCATGATCCGGCCGGGCCGATGG 16 15 1 TGATCCGGCC 0.586298 -130 TATGACGCTGTGATCACACCTGGCGACCGG 17 64 1 TGATCACACC 0.626258 -150 CCGGGTGTTGTGAAGACGCCATTCGCAGAG 18 24 1 TGAAGACGCC 0.880981 -128 CTGCGATTGGTGTTTCCGCCACGGCGTTGG 18 66 1 TGTTTCCGCC 0.618816 -86 TACCGTTGTGTGATGACGACCGATCAAGTC 28 200 0 TGATGACGAC 0.894344 -101 CAGCGGGCCAGGTTGCCGACCAGACTTACC 30 238 0 GGTTGCCGAC 0.697259 -63 GGGATTTAGGTGTTGACACCCGAGCGCTCG 31 102 1 TGTTGACACC 0.668587 -72 CAACCCGTATTGATGCCACCTGAACAAGAA 32 187 1 TGATGCCACC 0.89951 -114 ACAGCGCAAGCGAACCCGACCGAGTTCGGG 34 18 1 CGAACCCGAC 0.266833 -34 GGTTTGAGTTTGAAGGCGACTCTGGGCGTC 35 268 0 TGAAGGCGAC 0.440455 -33 AAGGAGCACATGATCACGCCACCTCTCCCC 49 20 1 TGATCACGCC 0.900011 -109 CGCCCAAGTCTGTCGCCGCCGCGGCCAGCA 52 92 0 TGTCGCCGCC 0.877363 -145 ATCCCTGACCTGATGCCGCCCAAGTCTGTC 52 108 0 TGATGCCGCC 0.979627 -129 CTCCGTCAGCGGATGCCACCGCCAGGCCAC 54 148 0 GGATGCCACC 0.676267 -74 TGCTGAATTATGATCCCGAC 56 1 0 TGATCCCGAC 0.891265 -300 CGTTTCAGACTGTAGCCGCCCGGGCGGCGA 56 279 0 TGTAGCCGCC 0.896152 -22 AATGCCCCGTGTCGACGACGATGCGGTGG 59 10 1 TGTCGACGAC 0.557411 -55 ********** Masking position 2 Map Score: 10.8844 Number of sites scoring better than the average of aligned sites = 5173 Number in coding regions = 4941 Number in noncoding regions = 232 Number of orfs with sites within 600 bp upstream = 186 Fraction of orfs with sites within 600 bp upstream = 0.0298747 Motif number 15 TTTCGGATCTCCTCGCCGCACAGCGGCGGTGA 1 78 0 CCTCGCCCCA 0.916985 -24 TAACCGCGATCCTAGTCACCCGGTTGAACCAG 4 67 0 CCTAGTCCCG 0.887965 -28 GTCACCCTACCCAAGCCGAACGCGAAACGAGA 8 24 0 CCAAGCCACG 0.909462 -75 GGCGACGATGCCGAGCGCAGCGATGAGGAGGA 8 68 1 CCGAGCGACG 0.579825 -31 GAAGCGTGGGCCTGGCCCCCCAACC 12 4 0 CCTGGCCCCA 0.796252 -297 CTAAGTTGCCTCTAGCCTCTCAAGCCGCACCC 12 38 1 TCTAGCCCCA 0.744007 -263 AAGATCGCGGCCGCGCCCAGCAACAGACCAAC 12 130 0 CCGCGCCACA 0.616196 -171 GGTAACCGTAGCTAGCCCCGCGACCCGGGCGC 12 250 1 GCTAGCCCCG 0.815459 -51 ACAACCGAGCCCCCCAGAAAAAGGGG 15 5 1 CCGAGCCCCA 0.943994 -75 CCAACCGAGCGTACCGGGTGTTGTGA 18 5 1 CCGAGCGACG 0.579825 -147 CTTCAAGCCCCGCGGCACCTACCG 22 3 1 TCAAGCCCCG 0.872794 -29 GGGCCTCGCCTCCCCTGAAGAGTTT 27 172 0 CCTCGCCCCC 0.873711 -15 GCGTTTGGTACCAAACCGATCGGTGGGCCAAC 30 84 1 CCAAACCACG 0.228767 -217 CGAGCACCTTACTAGCCGAGCGAATCCGAACC 30 275 0 ACTAGCCACG 0.590668 -26 CCCCGGTTACCCGGGTCACACGTTCGAGGTGC 31 13 0 CCGGGTCCCG 0.514103 -161 TCGCGACGCCCCAAGCGGCGCAACCAAATTCG 32 78 0 CCAAGCGCCA 0.663034 -223 GGTTGTGGGGCCAAGCCGTGCACGCCGCAGCG 32 160 0 CCAAGCCTCA 0.381913 -141 TACTCTGTGCCCTAGACACCCGCATTTCTTCG 32 265 1 CCTAGACCCG 0.937924 -36 ATTGTGTGATCCTCGACACACGTACAAAACCG 35 12 0 CCTCGACCCG 0.882537 -289 CGAGGCGGTGTCAAGCCACGCCACCATGCTGA 35 227 0 TCAAGCCCCC 0.560103 -74 GGTCCCTAGACGCACCGCGGGGGCAA 37 5 1 CCTAGACCCC 0.737111 -78 ACGCTCGCGAACTCGACGCCCAC 42 2 0 ACTCGACCCA 0.182795 -299 GCGAGCACCAACGCGACCCTCGTGCAGCAGCT 42 214 1 ACGCGACCCG 0.36421 -87 CTGATGCCGCCCAAGTCTGTCGCCGCCGCGGC 52 97 0 CCAAGTCGCG 0.246283 -140 ACCTGGCGGCCCAAGACACTCGACGCGATCCA 54 33 1 CCAAGACCCG 0.913559 -189 CGCGAGAAGCCCTAGCCGCCCGAGATTGTCCC 56 125 0 CCTAGCCCCG 0.986837 -176 CGTTTCAGACTGTAGCCGCCCGGGCGGCGACT 56 277 0 TGTAGCCCCG 0.300361 -24 TGATCAGGTACCAAGCCCCTCGATCCTGCACC 60 120 1 CCAAGCCCCG 0.981288 -181 ******* * ** Masking position 11 Map Score: 26.1668 Number of sites scoring better than the average of aligned sites = 4141 Number in coding regions = 3784 Number in noncoding regions = 357 Number of orfs with sites within 600 bp upstream = 304 Fraction of orfs with sites within 600 bp upstream = 0.0488275