AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00670_mtub_reg_300.orf -o00670_mtub_300.ace -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 glyA2 300 glyA2 #2 Rv0954 164 hypothetical protein Rv0954 #3 Rv0955 39 hypothetical protein Rv0955 #4 purN 115 purN #5 glyA 300 glyA #6 fmt 196 fmt #7 metH 225 metH #8 panB 300 panB #9 dfrA 70 dfrA #10 thyA 164 thyA #11 Rv2963 113 hypothetical protein Rv2963 #12 purU 72 purU #13 folD 123 folD #14 Rv3404c 117 hypothetical protein Rv3404c #15 Rv3405c 61 hypothetical protein Rv3405c Motif number 1 TCGCACCGACCGTGCCTGACCGAAGGTGTA 1 26 1 CGTGCCTGAC 0.767414 -275 CTGAGAGTCTGCGGCGTCGCATCATGGCGC 1 61 0 GCGGCGTCGC 0.503359 -240 GCTGGTTGCGCCCTCCCCGCTCTGTCCTGA 1 94 0 CCCTCCCCGC 0.94451 -207 GAGGGCGCAACCAGCCCGGCGCGATCCGGG 1 109 1 CCAGCCCGGC 0.973367 -192 CAGCCCGGCGCGATCCGGGCTCGTCGAAAC 1 120 1 CGATCCGGGC 0.554462 -181 CGAACTGTTGGCGACCTCGCCGTGGCCGAA 1 180 1 GCGACCTCGC 0.897491 -121 AACGATGTCGCGGCCGCCGGATGCCCATTT 1 209 1 CGGCCGCCGG 0.90313 -92 GGAGCAATCGGCTGCCCGGCCAAATGGGCA 1 230 0 GCTGCCCGGC 0.964369 -71 CACCCTTGACCGCCCCCGAGTACGCCGAAC 1 265 1 CGCCCCCGAG 0.788428 -36 ACGTGTTCCACCTGCGCCGGGCAAGCGGCC 2 24 1 CCTGCGCCGG 0.711103 -141 GTTAATGTCGCGAGCGCCGGTCGCTCCGGC 2 62 1 CGAGCGCCGG 0.969294 -103 GGTCGCTCCGGCAGCGGCACCCGAACGTGC 2 80 1 GCAGCGGCAC 0.743998 -85 TGATCGAATCGCGTCGCCGGGAGCACAGCG 2 121 1 GCGTCGCCGG 0.503397 -44 CACGCGCGACCGGACGCGGGAACGCCCGG 3 10 0 CGGACGCGGG 0.80029 -30 TCTTCGCGCACACGCGCGACCGGACGCGGG 3 20 0 CACGCGCGAC 0.596431 -20 TCAGACAGTTGCGGCCTCACCAACCGCAGA 4 11 0 GCGGCCTCAC 0.962468 -105 CACGCTTTGAGGAGCCAGACTAGGCTCGCC 4 94 1 GGAGCCAGAC 0.534488 -22 TCGAAACACCGCGCCCTGGCCCCAGTGCCC 5 36 0 GCGCCCTGGC 0.93434 -265 ACAGCATCAACCGGCGTCAGCGTGCGAAAT 5 90 0 CCGGCGTCAG 0.835605 -211 GGGCACAAACCGCCCACCGCTACTCGTGAC 5 125 1 CGCCCACCGC 0.759118 -176 CTACTCGTGACCTACGTGGCAGCTGGGGCA 5 144 1 CCTACGTGGC 0.721171 -157 TCCAGCGAGCCGCTCCCGGGCTGATTACCC 5 232 0 CGCTCCCGGG 0.914068 -69 GCAGCAGTCACGGGCGCCAGTGTATCCAGC 5 256 0 CGGGCGCCAG 0.961243 -45 CGCGGTAGTGCGAGCGTCAGGTGCAGCAGT 5 278 0 CGAGCGTCAG 0.834041 -23 ATCGTTGTCGCGGGCACGGCGGGAGCCTGG 6 53 1 CGGGCACGGC 0.89427 -144 GGGCACGGCGGGAGCCTGGGCAGTAGCGTG 6 64 1 GGAGCCTGGG 0.918302 -133 AGAAGCGCCGCCGACGTGGCGTGGGCCACA 6 165 0 CCGACGTGGC 0.501057 -32 TGCACGGTTCGCATCGTCGCCCGGGTGGAC 7 27 0 GCATCGTCGC 0.879386 -199 GTCGTCTGAGGCGGCCCGGCTAGTAGCGAT 7 58 1 GCGGCCCGGC 0.762673 -168 ACACAACGTGCCCACCTCAGCGCGACAAAG 7 95 0 CCCACCTCAG 0.712554 -131 ACGTTGTGTGCCTGCCTCAGCTGAGACTCT 7 116 1 CCTGCCTCAG 0.801505 -110 TGTGACCGATGCGACGTCGCGGTACCTGGC 7 155 1 GCGACGTCGC 0.498914 -71 GCGACGTCGCGGTACCTGGCAGAGCGCTGT 7 165 1 GGTACCTGGC 0.726491 -61 TTCCGAAACCGCGGCCTCGCCTTGATCTGG 8 35 1 GCGGCCTCGC 0.888832 -266 CCTTTGACCGGCTGCGTGACGCGTTCTGAC 8 66 0 GCTGCGTGAC 0.812446 -235 CATGTTTGCTCGAGCATGGGTTACGCCTTT 8 91 0 CGAGCATGGG 0.505447 -210 ACAGCAACTGGCGTCCAGGCCACTGAGCCG 8 147 1 GCGTCCAGGC 0.760314 -154 TATGCCGATGGGGGCCCCGGGCGCGTCTGA 8 192 1 GGGGCCCCGG 0.987268 -109 CGGGTTCGTCGGACCCTGACAGTCTGCCAC 8 231 0 GGACCCTGAC 0.61343 -70 TGGCCCGTTAGGGTCCCCGGGTTCGTCGGA 8 248 0 GGGTCCCCGG 0.961268 -53 GGCGCGCCGACGACAATGAA 9 1 1 GGCGCGCCGA 0.714706 -70 CGTCACACGCGTCACTCCTTGATTC 9 56 0 CACGCGTCAC 0.546386 -15 CACCCAGATCCGCGCCACAGGAGTACAACG 10 17 0 CGCGCCACAG 0.686666 -148 GCTGTGCCCGGCTTCGCCGCGCTTGCGATC 10 62 1 GCTTCGCCGC 0.842521 -103 CCGCCGCAGCGACTCGCCGCCAAACAAACC 10 100 0 GACTCGCCGC 0.658325 -65 CGCTGCGGCGGCTTCGCCGCGCTTGCGATC 10 119 1 GCTTCGCCGC 0.842521 -46 GCCGCGCTTGCGATCGCCGCTAGGCTGACC 10 134 1 CGATCGCCGC 0.932679 -31 TAAACGTATCGCCGCCCCACTCTTGCCGAG 11 22 0 GCCGCCCCAC 0.97199 -92 GATACGTTTAGCGGCACCACTGCGCGGTCG 11 42 1 GCGGCACCAC 0.83091 -72 GCGGTCGTTGCCCACCCCGGTGACTATACC 11 65 1 CCCACCCCGG 0.85887 -49 CCACCATATACCACCCGGGGGTATAGTCAC 11 84 0 CCACCCGGGG 0.536309 -30 CGCCACCACGCCGATCAGTCG 12 2 1 GCCACCACGC 0.733132 -71 GGCCAGGATACCGCCGCCGGTGGCCTTTTC 12 37 0 CCGCCGCCGG 0.506809 -36 CCGTACGGTGGGCGCGTGAGCGGGTCGTCG 13 66 1 GGCGCGTGAG 0.868785 -58 GCGCGTGAGCGGGTCGTCGCCATCGGCACC 13 77 1 GGGTCGTCGC 0.933873 -47 CGTCGCCATCGGCACCGCGGACACGCATGC 13 91 1 GGCACCGCGG 0.69414 -33 TGCGCTGGCCCCAGCGTGGCCGTCCGGTAT 14 21 1 CCAGCGTGGC 0.876276 -97 CCCTACTTCAGGGCCGACGCATACCGGACG 14 41 0 GGGCCGACGC 0.824306 -77 GCTGGTGTTGGGGGCTCCGCTGATGGGCGC 14 74 1 GGGGCTCCGC 0.814599 -44 GACTCGCCCCCGCCAGCCTGCCCAGC 14 102 0 CCCCCGCCAG 0.831669 -16 ********** Masking position 5 Map Score: 81.8619 Number of sites scoring better than the average of aligned sites = 99601 Number in coding regions = 92695 Number in noncoding regions = 6906 Number of orfs with sites within 600 bp upstream = 1639 Fraction of orfs with sites within 600 bp upstream = 0.263251 Motif number 2 CAGGCACGGTCGGTGCGACCGTCCCTGTCTC 1 13 0 CGGGCGACCG 0.749721 -288 CAGGACAGAGCGGGGAGGGCGCAACCAGCCC 1 95 1 CGGGAGGGCG 0.977593 -206 GAGGGCGCAACCAGCCCGGCGCGATCCGGGC 1 109 1 CCACCCGGCG 0.975566 -192 CAGCCCGGCGCGATCCGGGCTCGTCGAAACC 1 120 1 CGACCGGGCT 0.650305 -181 GATCCGGGCTCGTCGAAACCGGAGTTGGCCC 1 131 1 CGTGAAACCG 0.649672 -170 GACATCGTTTCGGCCACGGCGAGGTCGCCAA 1 187 0 CGGCACGGCG 0.863763 -114 CATCCGGCGGCCGCGACATCGTTTCGGCCAC 1 201 0 CCGGACATCG 0.892441 -100 GCCCATTTGGCCGGGCAGCCGATTGCTCCGG 1 231 1 CCGGCAGCCG 0.970258 -70 CCGAGTACGCCGAACAGACCGGACTGAGCTG 1 280 1 CGACAGACCG 0.630459 -21 TCCACCTGCGCCGGGCAAGCGGCCGTCCAGT 2 30 1 CCGGCAAGCG 0.959016 -135 GGGCAAGCGGCCGTCCAGTCGTTAATGTCGC 2 42 1 CCGCCAGTCG 0.824359 -123 CAGTCGTTAATGTCGCGAGCGCCGGTCGCTC 2 57 1 TGTGCGAGCG 0.542372 -108 GTGCCGCTGCCGGAGCGACCGGCGCTCGCGA 2 69 0 CGGGCGACCG 0.868987 -96 ATTCGATCAACCACGCTAGCGCACGTTCGGG 2 99 0 CCAGCTAGCG 0.690485 -66 TGCGACGCTGTGCTCCCGGCGACGCGATTCG 2 125 0 TGCCCCGGCG 0.813813 -40 TCTGCGGTTGGTGAGGCCGCAACTGTCTG 4 9 1 TGGGAGGCCG 0.647172 -107 GAATTTCGCACGCTGACGCCGGTTGATGCTG 5 88 1 CGCGACGCCG 0.628787 -213 CTGCCGTTTGCGGTGCAGACGTGCAACGGTG 5 181 1 CGGGCAGACG 0.915793 -120 ACACTGGCGCCCGTGACTGCTGCACCTGACG 5 263 1 CCGGACTGCT 0.630791 -38 ATCGTTGTCGCGGGCACGGCGGGAGCCTGGG 6 53 1 CGGCACGGCG 0.986504 -144 GCGTGCCTTGCGTACCCACCGGATACAGTAT 6 89 1 CGTCCCACCG 0.936764 -108 GTCTAAGAAGCGCCGCCGACGTGGCGTGGGC 6 169 0 CGCGCCGACG 0.676237 -28 CCTACGGCGTCCACCCGGGCGACGATGCGAA 7 19 1 CCACCGGGCG 0.930837 -207 CGATGCGAACCGTGCACGTCGTCTGAGGCGG 7 41 1 CGTCACGTCG 0.793804 -185 TCGCTACTAGCCGGGCCGCCTCAGACGACGT 7 56 0 CCGGCCGCCT 0.957989 -170 CGCGACAAAGCGTGGCCATCGCTACTAGCCG 7 74 0 CGTGCCATCG 0.908679 -152 AGGCACACAACGTGCCCACCTCAGCGCGACA 7 98 0 CGTCCCACCT 0.697702 -128 GACGTCGCATCGGTCACAGCTGCCACAAGAG 7 142 0 CGGCACAGCT 0.796916 -84 CTGCCAGGTACCGCGACGTCGCATCGGTCAC 7 156 0 CCGGACGTCG 0.94575 -70 TTTCCTCAGTCGTTGACAGCGCTCTGCCAGG 7 179 0 CGTGACAGCG 0.90011 -47 AAAAAGCTTGCCAGCAGTGCGCTGAA 8 6 0 CCACAGTGCG 0.398102 -295 GCCACTGAGCCGCTGCATGCGCGATGGTATG 8 165 1 CGCGCATGCG 0.749886 -136 GGCGCGCCGACGACAATGAAGT 9 2 1 GCGGCCGACG 0.59576 -69 TGAAGGCTGTCCGAGCCGACTTCATTGTCGT 9 20 0 CCGGCCGACT 0.853066 -51 GCTCGGACAGCCTTCAAGCCGGAATCAAGGA 9 35 1 CCTCAAGCCG 0.628061 -36 ACACCCAGATCCGCGCCACAGGAGTACAACG 10 17 0 CCGGCCACAG 0.632431 -148 GCGGCGAAGCCGGGCACAGCGAGTCGACGGG 10 51 0 CGGCACAGCG 0.973055 -114 CCCGGCTTCGCCGCGCTTGCGATCGCCCGCT 10 68 1 CCGGCTTGCG 0.775892 -97 GCCAAACAAACCCAGCGGGCGATCGCAAGCG 10 81 0 CCCGCGGGCG 0.970903 -84 GCAAGCGCGGCGAAGCCGCCGCAGCGACTCG 10 114 0 CGAGCCGCCG 0.927131 -51 GGCGGCTTCGCCGCGCTTGCGATCGCCGCTA 10 125 1 CCGGCTTGCG 0.775892 -40 CGCCACCACGCCGATCAGTCGGC 12 3 1 CCACACGCCG 0.89266 -70 GTGGCCTTTTCGGCGCCGACTGATCGGCGTG 12 17 0 CGGGCCGACT 0.883592 -56 GCCAGGATACCGCCGCCGGTGGCCTTTTCGG 12 35 0 CGCGCCGGTG 0.674419 -38 GCGGCGGTATCCTGGCCTGCGGGTATTCCAC 12 50 1 CCTGCCTGCG 0.936564 -23 GACCCGCTCACGCGCCCACCGTACGGACAAC 13 61 0 CGCCCCACCG 0.952313 -63 GTGAGCGGGTCGTCGCCATCGGCACCGCGGA 13 81 1 CGTGCCATCG 0.840629 -43 ACGGCCACGCTGGGGCCAGCGCAGGGACATC 14 13 0 TGGGCCAGCG 0.92458 -105 CACCCTACTTCAGGGCCGACGCATACCGGAC 14 42 0 CAGGCCGACG 0.679513 -76 CCCCCGCCAGCCTGCCCAGCGCCCATCAGCG 14 91 0 CCTCCCAGCG 0.962309 -27 *** ******* Masking position 10 Map Score: 84.1653 Number of sites scoring better than the average of aligned sites = 75590 Number in coding regions = 71616 Number in noncoding regions = 3974 Number of orfs with sites within 600 bp upstream = 1373 Fraction of orfs with sites within 600 bp upstream = 0.220527 Motif number 3 CTCTACACCTTCGGTCAGGCACGGTCGGTG 1 29 0 TCGGTCAGGC 0.537274 -272 TGCGCCCTCCCCGCTCTGTCCTGAAACCTG 1 88 0 CCGCTCTGTC 0.802297 -213 CGGGGAGGGCGCAACCAGCCCGGCGCGATC 1 105 1 GCAACCAGCC 0.682111 -196 GAGCAATCGGCTGCCCGGCCAAATGGGCAT 1 229 0 CTGCCCGGCC 0.938492 -72 TGTTCCACCTGCGCCGGGCAAGCGGCCGTC 2 27 1 GCGCCGGGCA 0.637842 -138 ACATTAACGACTGGACGGCCGCTTGCCCGG 2 40 0 CTGGACGGCC 0.784205 -125 GTGAGCACCACCAGCCTGCATCCCAGTGCA 4 65 0 CCAGCCTGCA 0.766949 -51 ACGGCGAGCCTAGTCTGGCT 4 106 0 ACGGCGAGCC 0.91739 -10 TCGAAACACCGCGCCCTGGCCCCAGTGCCC 5 36 0 GCGCCCTGGC 0.823213 -265 CGTGCGAAATTCACAGGGCCACAGCTGAAT 5 70 0 TCACAGGGCC 0.335197 -231 GCCAGTGTATCCAGCGAGCCGCTCCCGGGC 5 241 0 CCAGCGAGCC 0.975576 -60 GCCCAGGCTCCCGCCGTGCCCGCGACAACG 6 55 0 CCGCCGTGCC 0.969632 -142 AGCCTGGGCAGTAGCGTGCCTTGCGTACCC 6 76 1 GTAGCGTGCC 0.679003 -121 CATACTGTATCCGGTGGGTACGCAAGGCAC 6 91 0 CCGGTGGGTA 0.326125 -106 GCGCCCAGTCTAAGAAGCGC 6 187 0 GCGCCCAGTC 0.887088 -10 CTGGTCAGCCTACGGCGTCC 7 1 1 CTGGTCAGCC 0.881997 -225 CCTACGGCGTCCACCCGGGCGACGATGCGA 7 19 1 CCACCCGGGC 0.895017 -207 GCCATCGCTACTAGCCGGGCCGCCTCAGAC 7 61 0 CTAGCCGGGC 0.704318 -165 GTCGTTGACAGCGCTCTGCCAGGTACCGCG 7 172 0 GCGCTCTGCC 0.902249 -54 ATGGCAAGGATAGTCGGCCTATGAAATTT 7 207 0 ATAGTCGGCC 0.39392 -19 AACGCGTCACGCAGCCGGTCAAAGGCGTAA 8 71 1 GCAGCCGGTC 0.90034 -230 CTGGAAACGTCCACTCAGCCCATGCATGTT 8 115 0 CCACTCAGCC 0.929801 -186 GGCGTCCAGGCCACTGAGCCGCTGCATGCG 8 156 1 CCACTGAGCC 0.882816 -145 TCGGACCCTGACAGTCTGCCACTTCTTCCC 8 223 0 ACAGTCTGCC 0.705122 -78 TTCATTGTCGTCGGCGCGCC 9 1 0 TCGGCGCGCC 0.601074 -70 TGAAGTCGGCTCGGACAGCCTTCAAGCCGG 9 27 1 TCGGACAGCC 0.718668 -44 GAAGCCGGGCACAGCGAGTCGACGGGAATA 10 47 0 ACAGCGAGTC 0.536538 -118 CCAAACAAACCCAGCGGGCGATCGCAAGCG 10 81 0 CCAGCGGGCG 0.781573 -84 GGTTTGTTTGGCGGCGAGTCGCTGCGGCGG 10 100 1 GCGGCGAGTC 0.890523 -65 GATTGACACGCGGTCAGCCTAGCGGCGAT 10 146 0 GCGGTCAGCC 0.958883 -19 CGCCACCACGCCGATCAGTCGGCGCCGAAA 12 11 1 CCGATCAGTC 0.395474 -62 CGGCGGTATCCTGGCCTGCGGGTATTCCAC 12 51 1 CTGGCCTGCG 0.524104 -22 GCATGCGTGTCCGCGGTGCCGATGGCGACG 13 91 0 CCGCGGTGCC 0.65301 -33 GCCAGCCAGTCTGGCATGCGT 13 113 0 CCAGCCAGTC 0.936652 -11 CCGACGCATACCGGACGGCCACGCTGGGGC 14 28 0 CCGGACGGCC 0.959475 -90 CTCGCCCCCGCCAGCCTGCCCAGCGCCCAT 14 96 0 CCAGCCTGCC 0.980618 -22 ********** Masking position 8 Map Score: 44.7148 Number of sites scoring better than the average of aligned sites = 40699 Number in coding regions = 37823 Number in noncoding regions = 2876 Number of orfs with sites within 600 bp upstream = 1229 Fraction of orfs with sites within 600 bp upstream = 0.197398 Motif number 4 ACACCTTCGGTCAGGCACGGTCGGTGCGAC 1 25 0 TCAGGCACGG 0.617559 -276 CGACATCGTTTCGGCCACGGCGAGGTCGCC 1 189 0 TCGGCCACGG 0.973847 -112 GCCGGTCGCTCCGGCAGCGGCACCCGAACG 2 77 1 CCGGCAGCGG 0.846714 -88 CTGGGCTTAGCTGGGCACTGGGGCCAGGGC 5 24 1 CTGGGCACTG 0.706498 -277 GCACTGGGGCCAGGGCGCGGTGTTTCGATG 5 38 1 CAGGGCGCGG 0.813223 -263 CGAAATTCACAGGGCCACAGCTGAATTCCA 5 66 0 AGGGCCACAG 0.81996 -235 ATGCTGTGAGTCGGGCACAAACCGCCCACC 5 113 1 TCGGGCACAA 0.887686 -188 AGCTGCCACGTAGGTCACGAGTAGCGGTGG 5 138 0 TAGGTCACGA 0.437356 -163 ACGTGGCAGCTGGGGCACTAGTGGCTGCCG 5 157 1 TGGGGCACTA 0.686421 -144 GGTAATCAGCCCGGGAGCGGCTCGCTGGAT 5 233 1 CCGGGAGCGG 0.709463 -68 GCAGCAGTCACGGGCGCCAGTGTATCCAGC 5 256 0 CGGGCGCCAG 0.830842 -45 CATCGTTGTCGCGGGCACGGCGGGAGCCTG 6 52 1 GCGGGCACGG 0.944841 -145 TGCGTACCCACCGGATACAGTATGCATCAG 6 97 1 CCGGATACAG 0.446782 -100 CGACGTGGCGTGGGCCACAATTCCGACACG 6 154 0 TGGGCCACAA 0.914213 -43 GGCGTCCACCCGGGCGACGATGCGAACCGT 7 24 1 CGGGCGACGA 0.884537 -202 CGACGTCGCATCGGTCACAGCTGCCACAAG 7 144 0 TCGGTCACAG 0.871952 -82 CGTCACGCAGCCGGTCAAAGGCGTAACCCA 8 75 1 CCGGTCAAAG 0.336128 -226 AACTGGCGTCCAGGCCACTGAGCCGCTGCA 8 152 1 CAGGCCACTG 0.902165 -149 TATGCCGATGGGGGCCCCGGGCGCGTCTGA 8 192 1 GGGGCCCCGG 0.906798 -109 CCCGGGTTCGTCGGACCCTGACAGTCTGCC 8 233 0 TCGGACCCTG 0.377256 -68 GGGACCCTAACGGGCCACGAGGATCGACCC 8 261 1 CGGGCCACGA 0.979569 -40 CACCCAGATCCGCGCCACAGGAGTACAACG 10 17 0 CGCGCCACAG 0.796538 -148 CGCGGCGAAGCCGGGCACAGCGAGTCGACG 10 53 0 CCGGGCACAG 0.950219 -112 GTCACCGGGGTGGGCAACGACCGCGCAGTG 11 59 0 TGGGCAACGA 0.670794 -55 CGCCGATCAGTCGGCGCCGAAAAGGCCACC 12 19 1 TCGGCGCCGA 0.441255 -54 GGAATACCCGCAGGCCAGGATACCGCCGCC 12 49 0 CAGGCCAGGA 0.388936 -24 TGTCCCTGCGCTGGCCCCAGCGTGGCCGTC 14 15 1 CTGGCCCCAG 0.650075 -103 CCGGCTACAGTAACCGATGT 15 52 0 CCGGCTACAG 0.895673 -10 ********** Masking position 4 Map Score: 23.1666 Number of sites scoring better than the average of aligned sites = 21737 Number in coding regions = 20297 Number in noncoding regions = 1440 Number of orfs with sites within 600 bp upstream = 876 Fraction of orfs with sites within 600 bp upstream = 0.1407 Motif number 5 GAGCGGGGAGGGCGCAACCAGCCCGGCGCGA 1 102 1 GGCGCACCAG 0.776735 -199 CTCCGGTTTCGACGAGCCCGGATCGCGCCGG 1 124 0 GACGACCCGG 0.967791 -177 TCGAACTGTTGGCGACCTCGCCGTGGCCGAA 1 179 1 GGCGACTCGC 0.836924 -122 CCCGGCCAAATGGGCATCCGGCGGCCGCGAC 1 215 0 TGGGCTCCGG 0.530314 -86 GGCGGTCAAGGGTGTTCCCGGAGCAATCGGC 1 248 0 GGTGTCCCGG 0.981177 -53 CGGTCTGTTCGGCGTACTCGGGGGCGGTCAA 1 270 0 GGCGTCTCGG 0.930182 -31 TGCCGCTGCCGGAGCGACCGGCGCTCGCGAC 2 68 0 GGAGCACCGG 0.776668 -97 AGTGCGACGCTGTGCTCCCGGCGACGCGATT 2 127 0 TGTGCCCCGG 0.924359 -38 CCGGGCGTTCCCGCGTCCGGTCGC 3 4 1 GGCGTCCCGC 0.992767 -36 TTCGCGCACACGCGCGACCGGACGCGGGAAC 3 17 0 CGCGCACCGG 0.700948 -23 TCTGCGGTTGGTGAGGCCGCAACTGTCTGA 4 10 1 GGTGAGCCGC 0.798206 -106 AAGCCCAGGGGGTACCCCCGG 5 1 0 GGTACCCCGG 0.868975 -300 TATCCAGCGAGCCGCTCCCGGGCTGATTACC 5 233 0 GCCGCCCCGG 0.98325 -68 CCAGGCTCCCGCCGTGCCCGCGACAACGATG 6 52 0 GCCGTCCCGC 0.96168 -145 TAGCGTGCCTTGCGTACCCACCGGATACAGT 6 87 1 TGCGTCCCAC 0.659497 -110 CGCCTCAGACGACGTGCACGGTTCGCATCGT 7 40 0 GACGTCACGG 0.629605 -186 TCCAGATCAAGGCGAGGCCGCGGTTTCGGAA 8 35 0 GGCGAGCCGC 0.943016 -266 GGGCTGAGTGGACGTTTCCAGACACAGCAAC 8 124 1 GACGTTCCAG 0.412035 -177 CTTCCCCTCAGACGCGCCCGGGGCCCCCATC 8 198 0 GACGCCCCGG 0.986188 -103 GTCAGGGTCCGACGAACCCGGGGACCCTAAC 8 241 1 GACGACCCGG 0.967791 -60 CCGTCGACTCGCTGTGCCCGGCTTCGCCGCG 10 52 1 GCTGTCCCGG 0.906279 -113 TCGCAAGCGCGGCGAAGCCGCCGCAGCGACT 10 116 0 GGCGAGCCGC 0.943016 -49 CCCCGGTGACTATACCCCCGGGTGGTATATG 11 79 1 TATACCCCGG 0.193886 -35 GGGTGGAATACCCGCAGGCCAGGAT 12 58 0 GGAATCCCGC 0.512373 -15 CAGTCTGGCATGCGTGTCCGCGGTGCCGATG 13 97 0 TGCGTTCCGC 0.783193 -27 AGCTGGTGTTGGGGGCTCCGCTGATGGGCGC 14 73 1 GGGGGTCCGC 0.357511 -45 ***** ***** Masking position 9 Map Score: 41.4434 Number of sites scoring better than the average of aligned sites = 18537 Number in coding regions = 17466 Number in noncoding regions = 1071 Number of orfs with sites within 600 bp upstream = 694 Fraction of orfs with sites within 600 bp upstream = 0.111468 Motif number 6 TCGCATCATGGCGCCGCTCTACACCTTCGGTCAGG 1 40 0 GCCCGTACCC 0.986322 -261 TGCGGTTCAGACAAGGGCCAACTCCGGTTTCGACG 1 141 0 ACAGGAACCC 0.770232 -160 ACCCTTGACCGCCCCCGAGTACGCCGAACAGACCG 1 266 1 GCCCCTACCC 0.841276 -35 GCACCGAATTAGAACGTGTTCCACCTGCGCCGGGC 2 11 1 AGACGTCCCC 0.921907 -154 CTGGTGCAGTGCGACGCTGTGCTCCCGGCGACGCG 2 130 0 GCACGTGCCC 0.968743 -35 CCCAGCTAAGCCCAGGGGGTACCCCCGG 5 4 0 CCAGGTACCC 0.981955 -297 CTTAATGCAGCACACGCCATCCACCGTTGCACGTC 5 198 0 CAACGTCCCC 0.958464 -103 CTGGTCAGCCTACGGCGTCCACCCGGGCGACGA 7 9 1 CCACGTCCCC 0.991446 -217 CGGGCCGCCTCAGACGACGTGCACGGTTCGCATCG 7 41 0 CAACGTGCCG 0.721713 -185 TGTTTGCTCGAGCATGGGTTACGCCTTTGACCGGC 8 84 0 AGATGTACCC 0.601915 -217 AGACTGTCAGGGTCCGACGAACCCGGGGACCCTAA 8 236 1 GGCCGAACCG 0.70081 -65 CGTCACACGCGTCACTCCTTGATTCCGG 9 53 0 CAACGCACCC 0.756273 -18 GGCCTCCGTTGTACTCCTGTGGCGCGG 10 3 1 CCCCGTACCC 0.989628 -162 CACAGCGAGTCGACGGGAATACACCCAGATCCGCG 10 33 0 CGCGGTACCC 0.952338 -132 TGCGATCGCCGCTAGGCTGACCGCGTGTCAATC 10 142 1 GCAGGACCCG 0.778991 -23 CCCACTCTTGCCGAGGTTTTCCCCGA 11 2 0 CCAGGTCCCG 0.949374 -112 GCTCTGCCCTCCACCATATACCACC 11 99 0 GCCTGTCCCC 0.915744 -15 ** *** *** ** Masking position 12 Map Score: 14.4157 Number of sites scoring better than the average of aligned sites = 4535 Number in coding regions = 4186 Number in noncoding regions = 349 Number of orfs with sites within 600 bp upstream = 298 Fraction of orfs with sites within 600 bp upstream = 0.0478638 Motif number 7 AGGTTTCAGGACAGAGCGGGGAGGGCGCAA 1 89 1 ACAGAGCGGG 0.852002 -212 GAGGGCGCAACCAGCCCGGCGCGATCCGGG 1 109 1 CCAGCCCGGC 0.937873 -192 ACGTGTTCCACCTGCGCCGGGCAAGCGGCC 2 24 1 CCTGCGCCGG 0.778421 -141 GTTAATGTCGCGAGCGCCGGTCGCTCCGGC 2 62 1 CGAGCGCCGG 0.919221 -103 CGCCGGGAGCACAGCGTCGCACTGCACCAG 2 135 1 ACAGCGTCGC 0.938654 -30 CTGGCTCCTCAAAGCGTGTGAGCACCACCA 4 82 0 AAAGCGTGTG 0.721253 -34 CCCAGTCTAAGAAGCGCCGCCGACGTGGCG 6 174 0 GAAGCGCCGC 0.912363 -23 TCAGCGCGACAAAGCGTGGCCATCGCTACT 7 79 0 AAAGCGTGGC 0.96515 -147 ACAGCTGCCACAAGAGTCTCAGCTGAGGCA 7 128 0 CAAGAGTCTC 0.510948 -98 GCTTTTTCCGAAACCGCGGCCTCGCCTTGA 8 30 1 AAACCGCGGC 0.816522 -271 CGGGCGATCGCAAGCGCGGCGAAGCCGGGC 10 67 0 CAAGCGCGGC 0.993565 -98 GCGGCGATCGCAAGCGCGGCGAAGCCGCCG 10 124 0 CAAGCGCGGC 0.993565 -41 AAAACCTCGGCAAGAGTGGGGCGGCGATAC 11 17 1 CAAGAGTGGG 0.890128 -97 GCCAGTCTGGCATGCGTGTCCGCGGTGCCG 13 100 0 CATGCGTGTC 0.682804 -24 CACGCTGGGGCCAGCGCAGGGACATCAG 14 9 0 CCAGCGCAGG 0.719753 -109 TGCGCTGGCCCCAGCGTGGCCGTCCGGTAT 14 21 1 CCAGCGTGGC 0.989412 -97 ********** Masking position 6 Map Score: 21.9131 Number of sites scoring better than the average of aligned sites = 9916 Number in coding regions = 9229 Number in noncoding regions = 687 Number of orfs with sites within 600 bp upstream = 495 Fraction of orfs with sites within 600 bp upstream = 0.0795053 Motif number 8 GGGACGGTCGCACCGACCGTGCCTGACCGA 1 19 1 CACCGACCGT 0.930866 -282 GCGGGGAGGGCGCAACCAGCCCGGCGCGAT 1 104 1 CGCAACCAGC 0.946967 -197 ACGGCGAGGTCGCCAACAGTTCGATCGTGC 1 173 0 CGCCAACAGT 0.936722 -128 GTTGCGGCCTCACCAACCGCAGA 4 4 0 CACCAACCGC 0.975624 -112 AGCGTGTGAGCACCACCAGCCTGCATCCCA 4 70 0 CACCACCAGC 0.971296 -46 GTGAGTCGGGCACAAACCGCCCACCGCTAC 5 118 1 CACAAACCGC 0.889085 -183 ACGTCTGCACCGCAAACGGCAGCCACTAGT 5 173 0 CGCAAACGGC 0.954793 -128 GCCACAATTCCGACACGCGCGATAGTTAGA 6 141 0 CGACACGCGC 0.640547 -56 GTCTAAGAAGCGCCGCCGACGTGGCGTGGG 6 170 0 CGCCGCCGAC 0.95219 -27 GAACGCGTCACGCAGCCGGTCAAAGGCGTA 8 70 1 CGCAGCCGGT 0.919519 -231 GGCGCGCCGACGACAATGAAGTCG 9 5 1 CGCCGACGAC 0.925292 -66 CCGGGGTGGGCAACGACCGCGCAGTGGTGC 11 55 0 CAACGACCGC 0.878201 -59 GCCAGGATACCGCCGCCGGTGGCCTTTTCG 12 36 0 CGCCGCCGGT 0.982773 -37 CCCGCTCACGCGCCCACCGTACGGACAACT 13 60 0 CGCCCACCGT 0.854477 -64 AGCGGGTCGTCGCCATCGGCACCGCGGACA 13 84 1 CGCCATCGGC 0.943261 -40 GCGGAGCCCCCAACACCAGCTCACCCTACT 14 64 0 CAACACCAGC 0.828704 -54 GACTCGCCCCCGCCAGCCTGCCCAGCG 14 101 0 CCCCGCCAGC 0.929177 -17 ********** Masking position 1 Map Score: 24.1724 Number of sites scoring better than the average of aligned sites = 22286 Number in coding regions = 21141 Number in noncoding regions = 1145 Number of orfs with sites within 600 bp upstream = 735 Fraction of orfs with sites within 600 bp upstream = 0.118053 Motif number 9 AGACAGGGACGGTCGCACCGACCGTGCCTG 1 14 1 GGTCGCACCG 0.787132 -287 AAACCTGAGAGTCTGCGGCGTCGCATCATG 1 65 0 GTCTGCGGCG 0.944871 -236 GACGAGCCCGGATCGCGCCGGGCTGGTTGC 1 115 0 GATCGCGCCG 0.980014 -186 GTTGGCCCTTGTCTGAACCGCACGATCGAA 1 154 1 GTCTGAACCG 0.941557 -147 TGAACCGCACGATCGAACTGTTGGCGACCT 1 167 1 GATCGAACTG 0.683824 -134 AACTGTTGGCGACCTCGCCGTGGCCGAAAC 1 182 1 GACCTCGCCG 0.868611 -119 CCGGGCAGCCGATTGCTCCGGGAACACCCT 1 241 1 GATTGCTCCG 0.642142 -60 GAACACCCTTGACCGCCCCCGAGTACGCCG 1 262 1 GACCGCCCCC 0.726774 -39 GAACAGACCGGACTGAGCTG 1 291 1 GACTGAGCTG 0.903274 -10 TAGCGTGGTTGATCGAATCGCGTCGCCGGG 2 112 1 GATCGAATCG 0.411643 -53 ACGGTACTGAGTCTGCACTGGGATGCAGGC 4 52 1 GTCTGCACTG 0.904583 -64 ACCGTTGCACGTCTGCACCGCAAACGGCAG 5 181 0 GTCTGCACCG 0.973848 -120 GACGTGCACGGTTCGCATCGTCGCCCGGGT 7 31 0 GTTCGCATCG 0.639527 -195 CGTGCACGTCGTCTGAGGCGGCCCGGCTAG 7 51 1 GTCTGAGGCG 0.881882 -175 TGCCACAAGAGTCTCAGCTGAGGCAGGCAC 7 123 0 GTCTCAGCTG 0.37649 -103 GCGTCCAGGCCACTGAGCCGCTGCATGCGC 8 157 1 CACTGAGCCG 0.673182 -144 GGGCCACGAGGATCGACCCGACCACCATTA 8 272 1 GATCGACCCG 0.858122 -29 CTTGAAGGCTGTCCGAGCCGACTTCATTGT 9 23 0 GTCCGAGCCG 0.987485 -48 GGTGGGCAACGACCGCGCAGTGGTGCCGCT 11 51 0 GACCGCGCAG 0.897537 -63 ACGCCGATCAGTCGGCGCCGAAAAGGCCAC 12 18 1 GTCGGCGCCG 0.972747 -55 TGGCATGCGTGTCCGCGGTGCCGATGGCGA 13 93 0 GTCCGCGGTG 0.891469 -31 TCCGGTATGCGTCGGCCCTGAAGTAGGGTG 14 43 1 GTCGGCCCTG 0.721523 -75 ********** Masking position 1 Map Score: 26.4366 Number of sites scoring better than the average of aligned sites = 21277 Number in coding regions = 20008 Number in noncoding regions = 1269 Number of orfs with sites within 600 bp upstream = 799 Fraction of orfs with sites within 600 bp upstream = 0.128333 Motif number 10 GCCGGAGCGACCGGCGCTCGCGACATTAACGA 2 60 0 CCGGGCTGCG 0.95027 -105 GGCTCCTCCACTGGTGCAGTGCGACG 2 149 0 CCTCACTGTG 0.95022 -16 CGACTCACAGCATCAACCGGCGTCAGCGTGCG 5 94 0 CATCACCGCG 0.869393 -207 AAACCGCCCACCGCTACTCGTGACCTACGTGG 5 131 1 CCGCACTGTG 0.991992 -170 CCGCAAACGGCAGCCACTAGTGCCCCAGCTGC 5 162 0 CAGCACTGTG 0.981434 -139 ACACTGGCGCCCGTGACTGCTGCACCTGACGC 5 263 1 CCGTACTCTG 0.557331 -38 TGAGGCGGCCCGGCTAGTAGCGATGGCCACGC 7 64 1 CGGCAGTGCG 0.841036 -162 TTTCCAGACACAGCAACTGGCGTCCAGGCCAC 8 138 1 CAGCACTGCG 0.98949 -163 GGCCACTGAGCCGCTGCATGCGCGATGGTATG 8 164 1 CCGCGCAGCG 0.958787 -137 GAAGCCGCCGCAGCGACTCGCCGCCAAACAAA 10 102 0 CAGCACTGCC 0.921535 -63 GGCCAGGATACCGCCGCCGGTGGCCTTTTCGG 12 35 0 CCGCGCCGTG 0.970734 -38 **** *** *** Masking position 1 Map Score: 10.2717 Number of sites scoring better than the average of aligned sites = 3858 Number in coding regions = 3569 Number in noncoding regions = 289 Number of orfs with sites within 600 bp upstream = 228 Fraction of orfs with sites within 600 bp upstream = 0.0366206 Motif number 11 ********** No masking Map Score: 8.76972e-14 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ********** No masking Map Score: 8.76972e-14 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: 8.76972e-14 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0