AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00710_mtub_reg_100.orf -o00710_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 aspC 30 aspC #2 Rv0338c 108 hypothetical protein Rv0338c #3 fba 95 fba #4 Rv0858c 156 hypothetical protein Rv0858c #5 ppdK 212 ppdK #6 fdxC 212 fdxC #7 Rv1178 32 hypothetical protein Rv1178 #8 mdh 170 mdh #9 fmt 196 fmt #10 rpe 24 rpe #11 gap 300 gap #12 tkt 300 tkt #13 pykA 107 pykA #14 rpi 101 rpi #15 fadD3 47 fadD3 Motif number 1 GACGTCCCAACATACCGGCCATCACGCAC 3 10 1 ACATACCGGC 0.627553 -86 ACCGGCCATCACGCACAGGCCGACAAGCTC 3 24 1 ACGCACAGGC 0.712818 -72 CCCAGTATCGCAACACCGCAACCGAGCTTG 3 47 0 CAACACCGCA 0.848497 -49 GAAGAAGGATCCAAACCCCCTTTTGTGGAA 4 32 0 CCAAACCCCC 0.555653 -125 AGACTAGGTCCCGTACCGGCACCCTAACAG 4 63 1 CCGTACCGGC 0.979546 -94 GGCACCCTAACAGGGCCCCCGGCCAACCTG 4 80 1 CAGGGCCCCC 0.945878 -77 GGGCGACGATGCGCGCCGCAGCGATACCTT 4 120 0 GCGCGCCGCA 0.953966 -37 CGGCGCGCATCGTCGCCCGGATAGGCTCGA 4 132 1 CGTCGCCCGG 0.543687 -25 CCCGGATAGGCTCGACCGCC 4 147 1 CTCGACCGCC 0.838307 -10 GTTCGACCGGCTCCCCCGCCTAACG 5 6 0 CTCCCCCGCC 0.836193 -207 GGCGTGGACAGCGCACCGGCCCAACGGCTT 5 37 0 GCGCACCGGC 0.985467 -176 GGTGCGCTGTCCACGCCGCCAGCCACCATC 5 50 1 CCACGCCGCC 0.990771 -163 CGCCAGCCACCATCACCGGCAGCCGGCGTT 5 66 1 CATCACCGGC 0.931409 -147 TGCTGCGAGACAACGCCGGCTGCCGGTGAT 5 77 0 CAACGCCGGC 0.984407 -136 CCGCTGACCAAGGCGCCCCCTGTGGGCCCA 5 147 1 AGGCGCCCCC 0.76526 -66 ATGGGCAACGCCAGACCGCCCACTGTGGGC 5 172 0 CCAGACCGCC 0.950008 -41 CCGGGCAGCATAGACGGCAA 6 1 1 CCGGGCAGCA 0.610454 -212 ATTGCCTCAGCAGGGCCCGGAGGAAGCCTT 6 133 1 CAGGGCCCGG 0.808894 -80 GGGTGCTGCCCCCAGCCGGC 7 1 0 CCCAGCCGGC 0.909656 -32 CGGCTGGGGGCAGCACCCGCTCGCGGCGGA 7 13 1 CAGCACCCGC 0.972597 -20 GCCCGATCAGATCCACCGCGATCGGAGGTT 8 14 0 ATCCACCGCG 0.601515 -157 GCGTAACCTGGAGCACCGCCCGATCAGATC 8 31 0 GAGCACCGCC 0.973532 -140 TTACCAAGTTCCATACCGGGACGCGTAACC 8 53 0 CCATACCGGG 0.871527 -118 GTTGAAACTAGCGCACCGGCACCGGACGGA 8 119 0 GCGCACCGGC 0.985467 -52 CAGGCTCCCGCCGTGCCCGCGACAACGATG 9 52 0 CCGTGCCCGC 0.763261 -145 TGCCTTGCGTACCCACCGGATACAGTATGC 9 92 1 ACCCACCGGA 0.826329 -105 CCAGTCTAAGAAGCGCCGCCGACGTGGCGT 9 173 0 AAGCGCCGCC 0.97694 -24 GGTTCGCCGCAGCGGCTCAGTAAT 10 5 1 CGCCGCAGCG 0.669093 -20 ATGAGCCCCGCCGCACCGGGCCGTTTCCAA 11 70 1 CCGCACCGGG 0.993938 -231 GCCGCCGCGTCCCTACCGCGGACATTGCGC 11 130 0 CCCTACCGCG 0.948348 -171 CCCCACCGATCCCAGCCGCCGCGTCCCTAC 11 144 0 CCCAGCCGCC 0.955465 -157 TCGGTGGGGTGAGCGCCCGGCTTCTCAAAG 11 165 1 GAGCGCCCGG 0.90822 -136 AAAGCGAGGGGAGCCCCGGGACTCTTACCG 11 191 1 GAGCCCCGGG 0.883663 -110 GATCAGTGACACCCGCCGCCTTCGGCCGGT 11 217 0 ACCCGCCGCC 0.980033 -84 GTTGGTCGGCGATCACCGGCATCATCGGTT 12 19 0 GATCACCGGC 0.770158 -282 CCGCGATTAAGCCGGCCGCCCGACCCGCAC 12 58 1 GCCGGCCGCC 0.531994 -243 GCCCCAGCAGCAGAGCCGCAGGGTCGATGA 12 119 1 CAGAGCCGCA 0.815688 -182 TTACGTTTCACAGGGCCCGGATGGGTACCC 12 202 1 CAGGGCCCGG 0.808894 -99 CCGGCGCTTGCAGTGCCGCATATCCGGGTA 12 227 0 CAGTGCCGCA 0.895093 -74 GCGGCACTGCAAGCGCCGGGATTCCCGCAC 12 238 1 AAGCGCCGGG 0.964623 -63 GCCCAGCCAACCAGACCGCGGGTAGGCGCG 13 12 0 CCAGACCGCG 0.921421 -96 CCACCGCGGGCAGCCCAGCCAACCAGACCG 13 24 0 CAGCCCAGCC 0.736516 -84 CACCGGTCAACACCACCGCGGGCAGCCCAG 13 36 0 CACCACCGCG 0.983701 -72 GTAGGGCCGGCACCGCCGGGTCGGCACACC 13 62 0 CACCGCCGGG 0.989365 -46 GCGGTGCCGGCCCTACCGCCGTCGCGACTA 13 76 1 CCCTACCGCC 0.968491 -32 ATAGTGAATTCGGCGCCGGAACACGCCCGG 14 17 1 CGGCGCCGGA 0.942696 -85 GGCGCCGGAACACGCCCGGGTTCTTGTCGC 14 28 1 CACGCCCGGG 0.866253 -74 CGGCGGGCGCCCGCGCCGGCGCCCGGCAGT 14 70 1 CCGCGCCGGC 0.982533 -32 GTGCCCGACACACTGCCGGGCGCCGGCGCG 14 81 0 CACTGCCGGG 0.927777 -21 ********** Masking position 6 Map Score: 88.9757 Number of sites scoring better than the average of aligned sites = 64587 Number in coding regions = 60705 Number in noncoding regions = 3882 Number of orfs with sites within 600 bp upstream = 1455 Fraction of orfs with sites within 600 bp upstream = 0.233697 Motif number 2 TCGGCCTGTGCGTGATGGCCGGTATGTTGG 3 17 0 CGTGATGGCC 0.79482 -79 CGCAACCGAGCTTGTCGGCCTGTGCGTGAT 3 31 0 CTTGTCGGCC 0.893207 -65 AACCAACAGGTTGGCCGGGGGCCCTGTTAG 4 86 0 TTGGCCGGGG 0.776477 -71 GGCCAACCTGTTGGTTGGGCAAGGTATCGC 4 100 1 TTGGTTGGGC 0.746892 -57 GTCGAACCAAGCCGTTGGGCCGGTGCGCTG 5 29 1 GCCGTTGGGC 0.930742 -184 GCCGGTGATGGTGGCTGGCGGCGTGGACAG 5 56 0 GTGGCTGGCG 0.879937 -157 ACCATCACCGGCAGCCGGCGTTGTCTCGCA 5 74 1 GCAGCCGGCG 0.717178 -139 GCTTGTGTCTGGTGTTGGGCCTTACCCATG 5 105 0 GGTGTTGGGC 0.88205 -108 GCCTTGGTCAGCGGTCGGACTACTCAGCTT 5 131 0 GCGGTCGGAC 0.838255 -82 CAAGGCGCCCCCTGTGGGCCCACAGTGGGC 5 155 1 CCTGTGGGCC 0.956051 -58 CCCACAGTGGGCGGTCTGGCGTTGCCCATA 5 173 1 GCGGTCTGGC 0.74436 -40 GCATAGCAATCCGGCTTGCCGTCTATGCTG 6 16 0 CCGGCTTGCC 0.73213 -197 ACTTGGCACATGCGTCGGCGTACACGGTCA 6 60 0 TGCGTCGGCG 0.881677 -153 GATACCGCTATGTGTGGGCTGCTGTCCACC 6 168 0 TGTGTGGGCT 0.604724 -45 GCCGGCTGGGGGCAGCACCCG 7 2 1 CCGGCTGGGG 0.955817 -31 GTCAGTCGTAGCTGTGGGGGTTGGACCCCA 8 85 1 GCTGTGGGGG 0.900168 -86 CGCACCGGCACCGGACGGACATCTGGGGTC 8 108 0 CCGGACGGAC 0.621604 -63 CCGCCGACGTGGCGTGGGCCACAATTCCGA 9 158 0 GGCGTGGGCC 0.930066 -39 ACGGCCCGGTGCGGCGGGGCTCATGTTCCC 11 64 0 GCGGCGGGGC 0.965492 -237 CCGCGGACATTGCGCTGGCTTGTGACACCG 11 115 0 TGCGCTGGCT 0.606895 -186 GCGGCTGGGATCGGTGGGGTGAGCGCCCGG 11 155 1 TCGGTGGGGT 0.788946 -146 ACTCTTACCGGCCGAAGGCGGCGGGTGTCA 11 211 1 GCCGAAGGCG 0.60425 -90 ACTGATCTAGGCTGACGGCCAGTGGTTGTT 11 240 1 GCTGACGGCC 0.912478 -61 TGTTGTCATCCTTGTTGGCTAAACAACCAC 11 261 0 CTTGTTGGCT 0.573805 -40 ACCGGCATCATCGGTTGGCCGGCG 12 5 0 TCGGTTGGCC 0.956009 -296 TGATAATCGGTTGGTCGGCGATCACCGGCA 12 28 0 TTGGTCGGCG 0.858811 -273 AAGTGTGGTGCGGGTCGGGCGGCCGGCTTA 12 65 0 CGGGTCGGGC 0.971074 -236 CTGCGGCTCTGCTGCTGGGGCTACGTCGAA 12 110 0 GCTGCTGGGG 0.893417 -191 CAGCAGCAGAGCCGCAGGGTCGATGACGGT 12 123 1 GCCGCAGGGT 0.532218 -178 TTCACAGGGCCCGGATGGGTACCCGGATAT 12 208 1 CCGGATGGGT 0.726049 -93 AACCAGACCGCGGGTAGGCGCGG 13 4 0 CGGGTAGGCG 0.881037 -104 TACCCGCGGTCTGGTTGGCTGGGCTGCCCG 13 18 1 CTGGTTGGCT 0.76448 -90 GTGGTGTTGACCGGTGTGCCGACCCGGCGG 13 50 1 CCGGTGTGCC 0.746194 -58 CCGACCCGGCGGTGCCGGCCCTACCGCCGT 13 68 1 GGTGCCGGCC 0.952017 -40 TCAGCATAGTCGCGACGGCGGTAGGGCCGG 13 82 0 CGCGACGGCG 0.841364 -26 GAATTCACTATCGGCGGGCGCCCGCGCCGG 14 59 1 TCGGCGGGCG 0.936571 -43 GGCGGGCGCCCGCGCCGGCGCCCGGCAGTG 14 71 1 CGCGCCGGCG 0.943556 -31 CGCCCGGCAGTGTGTCGGGCACA 14 89 1 TGTGTCGGGC 0.852782 -13 GCCCTGTAGGCTAACCTACCAA 15 3 1 CCTGTAGGCT 0.66269 -45 ********** Masking position 4 Map Score: 49.0491 Number of sites scoring better than the average of aligned sites = 57125 Number in coding regions = 53691 Number in noncoding regions = 3434 Number of orfs with sites within 600 bp upstream = 1371 Fraction of orfs with sites within 600 bp upstream = 0.220206 Motif number 3 CCGCGAGAAAGGCTGTCCTAACCTACCGGTC 2 12 0 GGCTGTCCAA 0.545301 -97 AGGACAGCCTTTCTCGCGGCGAAAGTCGCAC 2 24 1 TTCTCGCGCG 0.265049 -85 ACCCTAACAGGGCCCCCGGCCAACCTGTTGG 4 83 1 GGCCCCCGCC 0.930778 -74 CGGGCGACGATGCGCGCCGCAGCGATACCTT 4 120 0 TGCGCGCCCA 0.423258 -37 TGGTTCGACCGGCTCCCCCGCCTAACG 5 7 0 GGCTCCCCGC 0.867855 -206 TGGGCCGGTGCGCTGTCCACGCCGCCAGCCA 5 44 1 CGCTGTCCCG 0.945324 -169 CACCATCACCGGCAGCCGGCGTTGTCTCGCA 5 73 1 GGCAGCCGCG 0.73264 -140 GTAGTCCGACCGCTGACCAAGGCGCCCCCTG 5 138 1 CGCTGACCAG 0.706169 -75 GGGCACCCCTTGATGCTACTTA 5 201 0 GGCACCCCTG 0.531581 -12 ACCTCGCCAAGGCTTCCTCCGGGCCCTGCTG 6 140 0 GGCTTCCTCG 0.583491 -73 ATGTGTGGGCTGCTGTCCACCTCGCCAAGGC 6 158 0 TGCTGTCCCC 0.718271 -55 CGCGAGCGGGTGCTGCCCCCAGCCGGC 7 7 0 TGCTGCCCCA 0.911837 -26 GGGCAGCACCCGCTCGCGGCGGA 7 20 1 CGCTCGCGCG 0.952308 -13 CTACTGCCCAGGCTCCCGCCGTGCCCGCGAC 9 59 0 GGCTCCCGCG 0.9949 -138 TCGGAATTGTGGCCCACGCCACGTCGGCGGC 9 158 1 GGCCCACGCA 0.810263 -39 GTCTAAGAAGCGCCGCCGACGTGGCGTGGGC 9 169 0 CGCCGCCGCG 0.822339 -28 GGTTCGCCGCAGCGGCTCAGT 10 1 1 GGTTCGCCCA 0.365989 -24 AGAAGCCGGGCGCTCACCCCACCGATCCCAG 11 159 0 CGCTCACCCA 0.876407 -142 AGAGTCCCGGGGCTCCCCTCGCTTTGAGAAG 11 185 0 GGCTCCCCCG 0.996683 -116 CAGTGACACCCGCCGCCTTCGGCCGGTAAGA 11 213 0 CGCCGCCTCG 0.788748 -88 CACTGATCTAGGCTGACGGCCAGTGGTTGTT 11 239 1 GGCTGACGCC 0.868994 -62 TTGTCTCTCCTCGGCTTATTTGT 11 288 0 GTCTCTCCCG 0.706351 -13 CGATTAAGCCGGCCGCCCGACCCGCACCACA 12 61 1 GGCCGCCCAC 0.70626 -240 GTAACCCGCGCGCTACCCACGCTTCGCATTC 12 175 0 CGCTACCCCG 0.950848 -126 CCGCGCCTACCCGCGGTCTGGTTGG 13 5 1 GCCTACCCCG 0.652887 -103 TGGTTGGCTGGGCTGCCCGCGGTGGTGTTGA 13 29 1 GGCTGCCCCG 0.962998 -79 GCCGACCCGGCGGTGCCGGCCCTACCGCCGT 13 67 1 CGGTGCCGCC 0.491248 -41 CGCCGGCGCGGGCGCCCGCCGATAGTGAATT 14 60 0 GGCGCCCGCG 0.979086 -42 CGCCCGCGCCGGCGCCCGGCAGTGTGTCGGG 14 77 1 GGCGCCCGCA 0.923063 -25 GCCCTGTAGGCTAACCTACCAAGCACTTG 15 9 1 GGCTAACCAC 0.282954 -39 ******** ** Masking position 7 Map Score: 36.0038 Number of sites scoring better than the average of aligned sites = 22874 Number in coding regions = 21331 Number in noncoding regions = 1543 Number of orfs with sites within 600 bp upstream = 892 Fraction of orfs with sites within 600 bp upstream = 0.14327 Motif number 4 CTCGCGGCGAAAGTCGCACAGATGTCAGGA 2 36 1 AAGTCGCACA 0.904155 -73 CCGCAGCGATACCTTGCCCAACCAACAGGT 4 105 0 ACCTTGCCCA 0.966525 -52 GGGCGGTCTGGCGTTGCCCATAAGTAGCAT 5 181 1 GCGTTGCCCA 0.95748 -32 TTGCACATACACGTCGACCACTTGGCACAT 6 79 0 ACGTCGACCA 0.979689 -134 CTGATACTAGACGTTGCACATACACGTCGA 6 92 0 ACGTTGCACA 0.985446 -121 GCTGCTGTCCACCTCGCCAAGGCTTCCTCC 6 151 0 ACCTCGCCAA 0.818639 -62 GCTACGACTGACGTTTACCAAGTTCCATAC 8 67 0 ACGTTTACCA 0.840426 -104 CGAACACCGTACGTCGCAGAAGTGTGGTGC 12 84 0 ACGTCGCAGA 0.940075 -217 TGCTGGGGCTACGTCGAACACCGTACGTCG 12 98 0 ACGTCGAACA 0.968217 -203 CGCGCGGGTTACGTTTCACAGGGCCCGGAT 12 194 1 ACGTTTCACA 0.92129 -107 ********** Masking position 4 Map Score: 11.3572 Number of sites scoring better than the average of aligned sites = 1577 Number in coding regions = 1486 Number in noncoding regions = 91 Number of orfs with sites within 600 bp upstream = 93 Fraction of orfs with sites within 600 bp upstream = 0.0149374 Motif number 5 GACGTCCCAACATACCGGCCA 3 1 1 GACGTCCCAC 0.982489 -95 CGTTCCTCCTGACGACTCCGATCCACCCAGT 3 71 0 GACGACTCCA 0.937448 -25 TCAGCGGTCGGACTACTCAGCTTGTGTCTGG 5 123 0 GACTACTCAC 0.925432 -90 GGACGTCTCCTCAACATGTCTT 6 201 0 GACGTCTCCC 0.991718 -12 TCCAAATGGTGACGTCACAACGGTGTCACAA 11 95 1 GACGTCACAC 0.974182 -206 TACGGTGTTCGACGTAGCCCCAGCAGCAGAG 12 103 1 GACGTAGCCC 0.897867 -198 GACGACTCAGCATAGTCGCGA 13 97 0 GACGACTCAC 0.989423 -11 ********* * Masking position 2 Map Score: 5.58769 Number of sites scoring better than the average of aligned sites = 513 Number in coding regions = 471 Number in noncoding regions = 42 Number of orfs with sites within 600 bp upstream = 43 Fraction of orfs with sites within 600 bp upstream = 0.00690652 Motif number 6 TGGAATTTGTGGAACAGGAAATCGAC 4 3 0 GGACGAATCG 0.897986 -154 TTACGCGTCCCGGTATGGAACTTGGTAAACGTCA 8 55 1 CGGAGAATTG 0.95633 -116 GCCGTGCCCGCGACAACGATGTCGAAGTTCGCAG 9 39 0 CGAAGATTCG 0.610539 -158 AGCCGATGGTCGAAAAGGAACTCGATACGGCTAT 11 11 0 CGAAGAATCG 0.993546 -290 TTCGGCATATCGGCACCGAATGCGAAGCGTGGGT 12 158 1 CGGAGAAGCG 0.9909 -143 CCCGGATATGCGGCACTGCAAGCGCCGGGATTCC 12 229 1 CGGAGCAGCG 0.967233 -72 CCGCCGATAGTGAATTCGGCGCCGGAAC 14 5 1 CGAAGAATCG 0.985872 -97 GGGCGCCCGCCGATAGTGAATTCGGCGACAAGAA 14 48 0 CGAAGAATCG 0.985872 -54 *** * *** *** Masking position 8 Map Score: 9.29669 Number of sites scoring better than the average of aligned sites = 199 Number in coding regions = 189 Number in noncoding regions = 10 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 7 TCAGGATGAGCAGGTTATGCAGGGGTTCCA 2 60 1 CAGGTTATGC 0.881518 -49 GCATCGTCGCCCGGATAGGCTCGACCGCC 4 138 1 CCGGATAGGC 0.986005 -19 ATCCGGCTTGCCGTCTATGCTGCCCGG 6 8 0 CCGTCTATGC 0.912316 -205 TGCATATTGACCGTGTACGCCGACGCATGT 6 53 1 CCGTGTACGC 0.974045 -160 GGCGGTGCTCCAGGTTACGCGTCCCGGTAT 8 41 1 CAGGTTACGC 0.889272 -130 GGATGGGTACCCGGATATGCGGCACTGCAA 12 220 1 CCGGATATGC 0.974004 -81 CAACCAGACCGCGGGTAGGCGCGG 13 5 0 GCGGGTAGGC 0.968939 -103 GCCGGCACCGCCGGGTCGGCACACCGGTCA 13 57 0 CCGGGTCGGC 0.981669 -51 GCCCTGTAGGCTAACCTACCA 15 2 1 CCCTGTAGGC 0.91631 -46 ********** Masking position 6 Map Score: 9.33748 Number of sites scoring better than the average of aligned sites = 1493 Number in coding regions = 1372 Number in noncoding regions = 121 Number of orfs with sites within 600 bp upstream = 127 Fraction of orfs with sites within 600 bp upstream = 0.0203983 Motif number 8 GGGGGCCCTGTTAGGGTGCCGGTACGGGACC 4 69 0 TAGGGTGCCG 0.870149 -88 CGTTAGGCGGGGGAGCCGGTCGAACCAA 5 8 1 CGGGGAGCCG 0.98824 -205 TCGAACCAAGCCGTTGGGCCGGTGCGCTGTC 5 30 1 CGTTGGGCCG 0.945713 -183 GGAAGACATGTTGAGGAGACGTCC 6 199 1 TGAGGAGACG 0.650841 -14 ATTACTGAGCCGCTGCGGCGAA 10 13 0 TACTGAGCCG 0.878953 -12 AGGATGCTGACAATTGAGCCGATGGTCGAAA 11 30 0 CATTGAGCCG 0.969115 -271 GCTTGTGACACCGTTGTGACGTCACCATTTG 11 97 0 CGTTGTGACG 0.858716 -204 TCCCCTCGCTTTGAGAAGCCGGGCGCTCACC 11 172 0 TGAGAAGCCG 0.847242 -129 AGGATGACAACAAATAAGCCGAGGAGAGACA 11 279 1 CAATAAGCCG 0.890532 -22 GCCGGCCAACCGATGATGCCGGTGATCGCCG 12 12 1 CATGATGCCG 0.902433 -289 ATTATCACCGCGATTAAGCCGGCCGCCCGAC 12 51 1 CATTAAGCCG 0.909056 -250 GTAGCCCCAGCAGCAGAGCCGCAGGGTCGAT 12 116 1 CGCAGAGCCG 0.908546 -185 GCATTCGGTGCCGATATGCCGAAAAATCACC 12 150 0 CGATATGCCG 0.936189 -151 GTGGTGTTGACCGGTGTGCCGACCCGGCGGT 13 50 1 CGGTGTGCCG 0.982268 -58 TGTGCCGACCCGGCGGTGCCGGCCCTACCGC 13 64 1 CGCGGTGCCG 0.977619 -44 * ********* Masking position 8 Map Score: 20.8854 Number of sites scoring better than the average of aligned sites = 7382 Number in coding regions = 6938 Number in noncoding regions = 444 Number of orfs with sites within 600 bp upstream = 372 Fraction of orfs with sites within 600 bp upstream = 0.0597494 Motif number 9 GGCGTTGTCTCGCAGCATGGGTAAGGCCCA 5 90 1 CGCAGCATGG 0.990691 -123 GGTCGGACTACTCAGCTTGTGTCTGGTGTT 5 119 0 CTCAGCTTGT 0.8323 -94 CCGGGCAGCATAGACGGCAAGCC 6 4 1 GGCAGCATAG 0.922294 -209 AACGCATTGCCTCAGCAGGGCCCGGAGGAA 6 128 1 CTCAGCAGGG 0.966165 -85 GGACGTCTCCTCAACATGTCTTCCAGATA 6 194 0 CTCAACATGT 0.758079 -19 ACGTAGCCCCAGCAGCAGAGCCGCAGGGTC 12 114 1 AGCAGCAGAG 0.838116 -187 GACGACTCAGCATAGTCGCGACGGC 13 93 0 CTCAGCATAG 0.970738 -15 ********** Masking position 4 Map Score: 2.61217 Number of sites scoring better than the average of aligned sites = 1109 Number in coding regions = 1019 Number in noncoding regions = 90 Number of orfs with sites within 600 bp upstream = 82 Fraction of orfs with sites within 600 bp upstream = 0.0131706 Motif number 10 TCACGATTTGGCACCTGACAGCA 1 4 1 CGATTTGGCA 0.552718 -27 CTGTGGGCCCACAGGGGGCGCCTTGGTCAG 5 150 0 ACAGGGGGCG 0.912202 -63 CTGTGGGCCCACAGTGGGCGGTCTGGCGTT 5 166 1 ACAGTGGGCG 0.96026 -47 TACACGTCGACCACTTGGCACATGCGTCGG 6 72 0 CCACTTGGCA 0.888738 -141 GCCCGGAGGAAGCCTTGGCGAGGTGGACAG 6 147 1 AGCCTTGGCG 0.944195 -66 GCACGGCGGGAGCCTGGGCAGTAGCGTGCC 9 66 1 AGCCTGGGCA 0.954763 -131 GAAGCGCCGCCGACGTGGCGTGGGCCACAA 9 164 0 CGACGTGGCG 0.907956 -33 GGCGCTTCTTAGACTGGGCGC 9 186 1 AGACTGGGCG 0.982615 -11 GGCTAAACAACCACTGGCCGTCAGCCTAGA 11 245 0 CCACTGGCCG 0.836272 -56 CCGAATGCGAAGCGTGGGTAGCGCGCGGGT 12 173 1 AGCGTGGGTA 0.472127 -128 GGTCAACACCACCGCGGGCAGCCCAGCCAA 13 32 0 ACCGCGGGCA 0.79461 -76 ACCGGTGTGCCGACCCGGCGGTGCCGGCCC 13 59 1 CGACCCGGCG 0.650473 -49 ********** Masking position 7 Map Score: 6.21123 Number of sites scoring better than the average of aligned sites = 6403 Number in coding regions = 5855 Number in noncoding regions = 548 Number of orfs with sites within 600 bp upstream = 449 Fraction of orfs with sites within 600 bp upstream = 0.0721169 Motif number 11 ********** No masking Map Score: -6.88273e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 TGGAATTTGCTGTCAGGTGCCAAATCGTGA 1 11 0 GCTTAGGTGC 0.920738 -20 TGAGTGCTACGAATTGGGGTGACCTTCC 2 91 1 GAATGGGTGA 0.912819 -18 GCGGTGTTGCGATACTGGGTGGATCGGAGTCG 3 58 1 GATCGGGTGG 0.869941 -38 GCAAGGTATCGCTGCGGCGCGCATCGTCGCCC 4 118 1 GCTCGCGCGC 0.909453 -39 GGATTGCTATGCAACTAGGTGCATATTGACCG 6 34 1 GCACAGGTGC 0.577915 -179 TCCGCCGCGAGCGGGTGCTGCCCCCAGC 7 15 0 GCGGGGGTGC 0.607502 -18 TACGGACTTGGCTTCGGGTTGAAACTAGCGCA 8 134 0 GCTCGGTTGA 0.709773 -37 GGGAGCCTGGGCAGTAGCGTGCCTTGCGTACC 9 73 1 GCATGCGTGC 0.958774 -124 CTCGCTTTGAGAAGCCGGGCGCTCACCCCACC 11 167 0 GAACGGGCGC 0.943265 -134 GTACGTCGCAGAAGTGTGGTGCGGGTCGGGCG 12 74 0 GAATTGGTGC 0.784366 -227 CGGGATTCCCGCACTAGGGTGAGGACTGATCA 12 254 1 GCATGGGTGA 0.960805 -47 *** * ****** Masking position 11 Map Score: 4.77347 Number of sites scoring better than the average of aligned sites = 3824 Number in coding regions = 3546 Number in noncoding regions = 278 Number of orfs with sites within 600 bp upstream = 226 Fraction of orfs with sites within 600 bp upstream = 0.0362994 Motif number 13 ********** No masking Map Score: -6.88273e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: -6.88273e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -6.88273e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0