AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00710_mtub_reg_300.orf -o00710_mtub_300.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 aspC 30 aspC #2 Rv0338c 108 hypothetical protein Rv0338c #3 Rv0339c 185 hypothetical protein Rv0339c #4 fba 95 fba #5 Rv0858c 156 hypothetical protein Rv0858c #6 ppdK 212 ppdK #7 Rv1128c 101 hypothetical protein Rv1128c #8 fdxC 212 fdxC #9 Rv1178 32 hypothetical protein Rv1178 #10 mdh 170 mdh #11 fmt 196 fmt #12 rpe 24 rpe #13 gap 300 gap #14 tkt 300 tkt #15 Rv1615 300 hypothetical protein Rv1615 #16 pykA 107 pykA #17 rpi 101 rpi #18 Rv2466c 101 hypothetical protein Rv2466c #19 fadD3 47 fadD3 Motif number 1 ******* *** No masking Map Score: -2.19722 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 2 TACCCGCCTCCTTGCCCCACCC 3 3 1 CCCGCCTCCT 0.858932 -183 CCCGCCTCCTTGCCCCACCCCCGTTAGTCC 3 13 1 TGCCCCACCC 0.57326 -173 TATCGGTTGAGGCCGCGTCCGTGTTCGGTG 3 59 1 GGCCGCGTCC 0.534216 -127 CGGTGCGGAACCCGCCGGCCCCGGGGCGCC 3 84 1 CCCGCCGGCC 0.994674 -102 CCGCCGGCCCCGGGGCGCCGTTAGGGGATG 3 95 1 CGGGGCGCCG 0.83487 -91 TTCCCCTAATGCGGCCATCCCCTAACGGCG 3 110 0 GCGGCCATCC 0.855091 -76 AGGGGAAATGCGGGGCTGCGGGACGGGCTG 3 133 1 CGGGGCTGCG 0.913363 -53 CCCTCACCATAGCCCCAGCCCGTCCCGCAG 3 148 0 AGCCCCAGCC 0.782674 -38 TGGTGAGGGAGCCGCCGCCGACCAGCC 3 169 1 GCCGCCGCCG 0.986623 -17 TCCCAACATACCGGCCATCACGCACAGGCC 4 15 1 CCGGCCATCA 0.675713 -81 TAGGTCCCGTACCGGCACCCTAACAGGGCC 5 67 1 ACCGGCACCC 0.95941 -90 CCCTAACAGGGCCCCCGGCCAACCTGTTGG 5 84 1 GCCCCCGGCC 0.98441 -73 CGACGATGCGCGCCGCAGCGATACCTTGCC 5 117 0 CGCCGCAGCG 0.790862 -40 TCGAGCCTATCCGGGCGACGATGCGCGCCG 5 132 0 CCGGGCGACG 0.972461 -25 GCTTGGTTCGACCGGCTCCCCCGCCTAACG 6 11 0 ACCGGCTCCC 0.907311 -202 GACAGCGCACCGGCCCAACGGCTTGGTTCG 6 31 0 CGGCCCAACG 0.802394 -182 CGCTGTCCACGCCGCCAGCCACCATCACCG 6 54 1 GCCGCCAGCC 0.98561 -159 GCGAGACAACGCCGGCTGCCGGTGATGGTG 6 73 0 GCCGGCTGCC 0.973935 -140 TGGGCCCACAGGGGGCGCCTTGGTCAGCGG 6 147 0 GGGGGCGCCT 0.797332 -66 CAACGCCAGACCGCCCACTGTGGGCCCACA 6 167 0 CCGCCCACTG 0.737124 -46 CCGCCCGACGCCACAGCAGA 7 1 1 CCGCCCGACG 0.941634 -101 AATGCTATGTGCAGGCACCGACAACAATGC 7 77 0 GCAGGCACCG 0.708473 -25 CCGGGCAGCATAGACGGCAA 8 1 1 CCGGGCAGCA 0.958441 -212 AGCGGGTGCTGCCCCCAGCCGGC 9 4 0 GCCCCCAGCC 0.976316 -29 ACCTGGAGCACCGCCCGATCAGATCCACCG 10 26 0 CCGCCCGATC 0.684268 -145 GGGGTCCAACCCCCACAGCTACGACTGACG 10 84 0 CCCCACAGCT 0.492049 -87 AAACTAGCGCACCGGCACCGGACGGACATC 10 115 0 ACCGGCACCG 0.932363 -56 CTCCCGCCGTGCCCGCGACAACGATGTCGA 11 48 0 GCCCGCGACA 0.854079 -149 ACGCTACTGCCCAGGCTCCCGCCGTGCCCG 11 63 0 CCAGGCTCCC 0.750488 -134 CGGAATTGTGGCCCACGCCACGTCGGCGGC 11 159 1 GCCCACGCCA 0.665856 -38 TCTAAGAAGCGCCGCCGACGTGGCGTGGGC 11 169 0 GCCGCCGACG 0.955059 -28 GCGCCCAGTCTAAGAAGCGC 11 187 0 GCGCCCAGTC 0.700355 -10 GGTTCGCCGCAGCGGCTCAGTAAT 12 5 1 CGCCGCAGCG 0.790862 -20 ACATGAGCCCCGCCGCACCGGGCCGTTTCC 13 68 1 CGCCGCACCG 0.829001 -233 CGATCCCAGCCGCCGCGTCCCTACCGCGGA 13 138 0 CGCCGCGTCC 0.621016 -163 CTTTGAGAAGCCGGGCGCTCACCCCACCGA 13 165 0 CCGGGCGCTC 0.94275 -136 GTAAGAGTCCCGGGGCTCCCCTCGCTTTGA 13 189 0 CGGGGCTCCC 0.955447 -112 ATCAGTGACACCCGCCGCCTTCGGCCGGTA 13 216 0 CCCGCCGCCT 0.958341 -85 ACAACCACTGGCCGTCAGCCTAGATCAGTG 13 239 0 GCCGTCAGCC 0.68585 -62 CGCCGGCCAACCGATGATGCCG 14 3 1 CCGGCCAACC 0.967078 -298 CGCGATTAAGCCGGCCGCCCGACCCGCACC 14 59 1 CCGGCCGCCC 0.99377 -242 CGGCCGCCCGACCCGCACCACACTTCTGCG 14 70 1 ACCCGCACCA 0.742418 -231 TGTTCGACGTAGCCCCAGCAGCAGAGCCGC 14 108 1 AGCCCCAGCA 0.421932 -193 AACGTAACCCGCGCGCTACCCACGCTTCGC 14 179 0 GCGCGCTACC 0.846978 -122 GTGCGGGAATCCCGGCGCTTGCAGTGCCGC 14 238 0 CCCGGCGCTT 0.703663 -63 AACGCCCGCCTCCAATCCCGCACA 15 5 1 CCCGCCTCCA 0.92201 -296 GCCTCCAATCCCGCACAGCCGCGACCAACT 15 18 1 CCGCACAGCC 0.870437 -283 CGGGAACAAAACCGCCGGTCAGGCAGCTGT 15 48 1 ACCGCCGGTC 0.650731 -253 ACCCGATGTGCCCGGCTCTCAGCGACAGCT 15 72 0 CCCGGCTCTC 0.857615 -229 TGTCACTGCACCGGGCGACACCCGATGTGC 15 91 0 CCGGGCGACA 0.924637 -210 TCGTTGTGAGGCGGGCAACCGGTGCACCTC 15 204 0 GCGGGCAACC 0.956908 -97 GTTCGTTGTGCCCGGCTGCGAGCGACCGTG 15 248 0 CCCGGCTGCG 0.974347 -53 TTCCCAACATCGGCGCGGCAGAGCAGGAGT 15 278 0 CGGCGCGGCA 0.568072 -23 CCGCGCCTACCCGCGGTCTGG 16 2 1 CGCGCCTACC 0.868766 -106 CAACACCACCGCGGGCAGCCCAGCCAACCA 16 29 0 GCGGGCAGCC 0.984912 -79 ACCGCCGGGTCGGCACACCGGTCAACACCA 16 51 0 CGGCACACCG 0.645098 -57 CGGCGGTAGGGCCGGCACCGCCGGGTCGGC 16 67 0 GCCGGCACCG 0.984149 -41 TCAGCATAGTCGCGACGGCGGTAGGGCCGG 16 82 0 CGCGACGGCG 0.84654 -26 CCGGGCGTGTTCCGGCGCCGAATTCACTAT 17 17 0 TCCGGCGCCG 0.871875 -85 TTCACTATCGGCGGGCGCCCGCGCCGGCGC 17 62 1 GCGGGCGCCC 0.991095 -40 GGGCGCCCGCGCCGGCGCCCGGCAGTGTGT 17 74 1 GCCGGCGCCC 0.993456 -28 CGCACCTGTTCCCGCCGACCCGGTTAAGTT 18 18 0 CCCGCCGACC 0.984499 -84 GGAACAGGTGCGGGGCGGCCGTGGTTGTGC 18 36 1 CGGGGCGGCC 0.86266 -66 GGTGAGTACACCGCCCAGCACAACCACGGC 18 53 0 CCGCCCAGCA 0.913308 -49 ********** Masking position 6 Map Score: 114.089 Number of sites scoring better than the average of aligned sites = 71702 Number in coding regions = 67300 Number in noncoding regions = 4402 Number of orfs with sites within 600 bp upstream = 1466 Fraction of orfs with sites within 600 bp upstream = 0.235464 Motif number 3 CGACCGGTAGGTTAGGACAGCCT 2 4 1 CCGGTAGGTT 0.46833 -105 GGGACTAACGGGGGTGGGGCAAGGAGGCGG 3 14 0 GGGGTGGGGC 0.91486 -172 CGCCCCGGGGCCGGCGGGTTCCGCACCGAA 3 82 0 CCGGCGGGTT 0.855588 -104 CCCGCCGGCCCCGGGGCGCCGTTAGGGGAT 3 94 1 CCGGGGCGCC 0.972802 -92 TAGGGGAAATGCGGGGCTGCGGGACGGGCT 3 132 1 GCGGGGCTGC 0.971367 -54 GGCTGCGGGACGGGCTGGGGCTATGGTGAG 3 146 1 CGGGCTGGGG 0.491155 -40 TGCGTGATGGCCGGTATGTTGGGACGTC 4 9 0 CCGGTATGTT 0.251321 -87 AAGCTCGGTTGCGGTGTTGCGATACTGGGT 4 48 1 GCGGTGTTGC 0.929976 -48 TGTTAGGGTGCCGGTACGGGACCTAGTCTT 5 62 0 CCGGTACGGG 0.870097 -95 AGGTTGGCCGGGGGCCCTGTTAGGGTGCCG 5 79 0 GGGGCCCTGT 0.657101 -78 AGGTATCGCTGCGGCGCGCATCGTCGCCCG 5 121 1 GCGGCGCGCA 0.790664 -36 TCGAGCCTATCCGGGCGACGATGCGCGCCG 5 132 0 CCGGGCGACG 0.376331 -25 GGCGGTCGAGCCTATCCGGGC 5 146 0 GCGGTCGAGC 0.861415 -11 CGTTAGGCGGGGGAGCCGGTCGAACC 6 7 1 GCGGGGGAGC 0.922508 -206 AGCCGTTGGGCCGGTGCGCTGTCCACGCCG 6 38 1 CCGGTGCGCT 0.952056 -175 ATGGTGGCTGGCGGCGTGGACAGCGCACCG 6 49 0 GCGGCGTGGA 0.694291 -164 TCACCGGCAGCCGGCGTTGTCTCGCAGCAT 6 78 1 CCGGCGTTGT 0.905438 -135 CCCACAGTGGGCGGTCTGGCGTTGCCCATA 6 173 1 GCGGTCTGGC 0.912716 -40 GCATAGCAATCCGGCTTGCCGTCTATGCTG 8 16 0 CCGGCTTGCC 0.806889 -197 AGGCTTCCTCCGGGCCCTGCTGAGGCAATG 8 132 0 CGGGCCCTGC 0.833073 -81 GCCGGCTGGGGGCAGCACCCG 9 2 1 CCGGCTGGGG 0.863669 -31 CCGCCGCGAGCGGGTGCTGCCCCCAGCCGG 9 12 0 CGGGTGCTGC 0.887723 -21 ACCTCCGATCGCGGTGGATCTGATCGGGCG 10 15 1 GCGGTGGATC 0.650541 -156 ATCTGATCGGGCGGTGCTCCAGGTTACGCG 10 32 1 GCGGTGCTCC 0.956541 -139 AAGTTCCATACCGGGACGCGTAACCTGGAG 10 48 0 CCGGGACGCG 0.695793 -123 CCGTCCGGTGCCGGTGCGCTAGTTTCAACC 10 120 1 CCGGTGCGCT 0.952056 -51 ATCGTTGTCGCGGGCACGGCGGGAGCCTGG 11 53 1 CGGGCACGGC 0.862206 -144 CGCCACGTCGGCGGCGCTTCTTAGACTGGG 11 174 1 GCGGCGCTTC 0.901233 -23 GTTCGCCGCAGCGGCTCAGTAAT 12 12 1 GCGGCTCAGT 0.742383 -13 TGGAAACGGCCCGGTGCGGCGGGGCTCATG 13 69 0 CCGGTGCGGC 0.990312 -232 GGTAAGAGTCCCGGGGCTCCCCTCGCTTTG 13 190 0 CCGGGGCTCC 0.946513 -111 CCGGCCGAAGGCGGCGGGTGTCACTGATCT 13 218 1 GCGGCGGGTG 0.779081 -83 TGCGGGTCGGGCGGCCGGCTTAATCGCGGT 14 57 0 GCGGCCGGCT 0.893748 -244 CATCGACCCTGCGGCTCTGCTGCTGGGGCT 14 118 0 GCGGCTCTGC 0.938358 -183 GGTACCCATCCGGGCCCTGTGAAACGTAAC 14 201 0 CGGGCCCTGT 0.673489 -100 ACCCGGATATGCGGCACTGCAAGCGCCGGG 14 228 1 GCGGCACTGC 0.947302 -73 ACTGCAAGCGCCGGGATTCCCGCACTAGGG 14 243 1 CCGGGATTCC 0.540525 -58 CGAGTTGGTCGCGGCTGTGCGGGATTGGAG 15 20 0 GCGGCTGTGC 0.916659 -281 TGCCTGACCGGCGGTTTTGTTCCCGAGTTG 15 43 0 GCGGTTTTGT 0.515983 -258 CGGGTGTCGCCCGGTGCAGTGACACATGTG 15 97 1 CCGGTGCAGT 0.90765 -204 AGGCGGGCAACCGGTGCACCTCCGCTCAGA 15 196 0 CCGGTGCACC 0.915919 -105 CAACATCGGCGCGGCAGAGCAGGAGTGTTC 15 274 0 GCGGCAGAGC 0.862161 -27 GCGCCTACCCGCGGTCTGGTTGGCTGGGCT 16 13 1 GCGGTCTGGT 0.811889 -95 TGGGCTGCCCGCGGTGGTGTTGACCGGTGT 16 37 1 GCGGTGGTGT 0.935 -71 GTGGTGTTGACCGGTGTGCCGACCCGGCGG 16 50 1 CCGGTGTGCC 0.929774 -58 GTGTGCCGACCCGGCGGTGCCGGCCCTACC 16 63 1 CCGGCGGTGC 0.983835 -45 AGTCGCGACGGCGGTAGGGCCGGCACCGCC 16 75 0 GCGGTAGGGC 0.944493 -33 CGACAAGAACCCGGGCGTGTTCCGGCGCCG 17 27 0 CCGGGCGTGT 0.817827 -75 CTGCCGGGCGCCGGCGCGGGCGCCCGCCGA 17 69 0 CCGGCGCGGG 0.977149 -33 GCGCCGGCGCCCGGCAGTGTGTCGGGCACA 17 82 1 CCGGCAGTGT 0.858403 -20 TCCAACTTAACCGGGTCGGCGGGAACAGGT 18 15 1 CCGGGTCGGC 0.938402 -87 GGGAACAGGTGCGGGGCGGCCGTGGTTGTG 18 35 1 GCGGGGCGGC 0.984843 -67 GTTGTGCTGGGCGGTGTACTCACCGCTGCT 18 59 1 GCGGTGTACT 0.534889 -43 GGCGCGGTCCTCTCGTTGGAGTC 18 89 0 GCGGTCCTCT 0.780082 -13 ********** Masking position 4 Map Score: 94.5136 Number of sites scoring better than the average of aligned sites = 48652 Number in coding regions = 45367 Number in noncoding regions = 3285 Number of orfs with sites within 600 bp upstream = 1374 Fraction of orfs with sites within 600 bp upstream = 0.220687 Motif number 4 GCCTTTCTCGCGGCGAAAGTCGCACAGATGTC 2 30 1 CGGGAAGTCG 0.649525 -79 GAGGCCGCGTCCGTGTTCGGTGCGGAACCCGC 3 67 1 CCGGTCGGTG 0.974567 -119 TAACGGCGCCCCGGGGCCGGCGGGTTCCGCAC 3 86 0 CCGGCCGGCG 0.978977 -100 AACACCGCAACCGAGCTTGTCGGCCTGTGCGT 4 34 0 CCGGTTGTCG 0.869184 -62 CGAGCCTATCCGGGCGACGATGCGCGCCGCAG 5 129 0 CGGCACGATG 0.6204 -28 GTGGCTGGCGGCGTGGACAGCGCACCGGCCCA 6 44 0 GCGGACAGCG 0.806988 -169 ACGCCGCCAGCCACCATCACCGGCAGCCGGCG 6 62 1 CCACTCACCG 0.61184 -151 ACAGGGGGCGCCTTGGTCAGCGGTCGGACTAC 6 138 0 CCTGTCAGCG 0.747264 -75 CAACGCCAGACCGCCCACTGTGGGCCCACAGG 6 165 0 CCGCACTGTG 0.614847 -48 TGTGCAGGCACCGACAACAATGCTTGCCCAGA 7 68 0 CCGCACAATG 0.785789 -34 ATCCGGCTTGCCGTCTATGCTGCCCGG 8 6 0 CCGCATGCTG 0.577535 -207 TGCATATTGACCGTGTACGCCGACGCATGTGC 8 53 1 CCGGACGCCG 0.806184 -160 TCCGCCGCGAGCGGGTGCTGCCC 9 20 0 CCGCCGAGCG 0.774722 -13 ATCAGATCCACCGCGATCGGAGGTTGAC 10 7 0 CCGGTCGGAG 0.803053 -164 GCTGCGAACTTCGACATCGTTGTCGCGGGCAC 11 38 1 TCGCTCGTTG 0.57816 -159 CATCGTTGTCGCGGGCACGGCGGGAGCCTGGG 11 52 1 GCGGACGGCG 0.883215 -145 CTAAGAAGCGCCGCCGACGTGGCGTGGGCCAC 11 166 0 CCGCACGTGG 0.75714 -31 CGCGTCCCTACCGCGGACATTGCGCTGGCTTG 13 123 0 CCGGACATTG 0.914396 -178 GACGCGGCGGCTGGGATCGGTGGGGTGAGCGC 13 149 1 CTGGTCGGTG 0.513568 -152 GGACTCTTACCGGCCGAAGGCGGCGGGTGTCA 13 209 1 CGGCAAGGCG 0.788651 -92 TGGCCGTCAGCCTAGATCAGTGACACCCGCCG 13 229 0 CCTGTCAGTG 0.490646 -72 TCGGCGATCACCGGCATCATCGGTTGGCCGGC 14 12 0 CCGCTCATCG 0.9736 -289 GGCTTAATCGCGGTGATAATCGGTTGGTCGGC 14 39 0 CGGGTAATCG 0.524606 -262 GGTCGGGCGGCCGGCTTAATCGCGGTGATAAT 14 51 0 CCGCTAATCG 0.826823 -250 CTGCGACGTACGGTGTTCGACGTAGCCCCAGC 14 95 1 CGGGTCGACG 0.705526 -206 TGCCGAAAAATCACCGTCATCGACCCTGCGGC 14 133 0 TCACTCATCG 0.16475 -168 GGTTTTGTTCCCGAGTTGGTCGCGGCTGTGCG 15 29 0 CCGGTGGTCG 0.88759 -272 TCGCTGAGAGCCGGGCACATCGGGTGTCGCCC 15 77 1 CCGGACATCG 0.970585 -224 GCACCGAGGGTCGGGCACATCGCACGGCCACA 15 132 0 TCGGACATCG 0.675333 -169 TCGCTCGCAGCCGGGCACAACGAACACTCCTG 15 253 1 CCGGACAACG 0.914435 -48 GCGTTCCCAACATCGGCGCGGCAGAGCA 15 283 0 CCACTCGGCG 0.913331 -18 GGCGGTAGGGCCGGCACCGCCGGGTCGGCACA 16 64 0 CCGCCCGCCG 0.943202 -44 CCGCCGATAGTGAATTCGGCGC 17 1 1 CCGCATAGTG 0.688675 -101 GCGCGGGCGCCCGCCGATAGTGAATTCGGCGA 17 54 0 CCGCATAGTG 0.688675 -48 GACACACTGCCGGGCGCCGGCGCGGGCGCCCG 17 73 0 CGGCCCGGCG 0.923681 -29 GGCGTCCAACTTAACCGGGTCGGCGGG 18 6 1 CCACTAACCG 0.204612 -96 AGGTGCGGGGCGGCCGTGGTTGTGCTGGGCGG 18 41 1 CGGCTGGTTG 0.403708 -61 *** * ****** Masking position 12 Map Score: 40.385 Number of sites scoring better than the average of aligned sites = 52902 Number in coding regions = 50339 Number in noncoding regions = 2563 Number of orfs with sites within 600 bp upstream = 1106 Fraction of orfs with sites within 600 bp upstream = 0.177642 Motif number 5 GATGCTATCGGTTGAGGCCGCGTCCGTGTT 3 54 1 GTTGAGGCCG 0.957793 -132 GGGCCGGTGCGCTGTCCACGCCGCCAGCCA 6 45 1 GCTGTCCACG 0.829219 -168 AGAAGTAAGTGATGTGGCTGCGAACTTCGA 11 22 1 GATGTGGCTG 0.919422 -175 CCAGGCTCCCGCCGTGCCCGCGACAACGAT 11 53 0 GCCGTGCCCG 0.963244 -144 CCGGCCAACCGATGATGCCGGTGATCGCCG 14 13 1 GATGATGCCG 0.838636 -288 GACCGGCGGTTTTGTTCCCGAGTTGGTCGC 15 38 0 TTTGTTCCCG 0.741548 -263 CGGTCAGGCAGCTGTCGCTGAGAGCCGGGC 15 63 1 GCTGTCGCTG 0.889256 -238 GGCGACACCCGATGTGCCCGGCTCTCAGCG 15 78 0 GATGTGCCCG 0.990544 -223 ACATGTGAGAGTTGTGGCCGTGCGATGTGC 15 120 1 GTTGTGGCCG 0.99108 -181 GTGGCCGTGCGATGTGCCCGACCCTCGGTG 15 133 1 GATGTGCCCG 0.990544 -168 AGGAGTGTTCGTTGTGCCCGGCTGCGAGCG 15 254 0 GTTGTGCCCG 0.992311 -47 CGCCCGGGTTCTTGTCGCCGAATTCACTAT 17 40 1 CTTGTCGCCG 0.913751 -62 CCGCCCCGCACCTGTTCCCGCCGACCCGGT 18 24 0 CCTGTTCCCG 0.909711 -78 ********** Masking position 4 Map Score: 19.0607 Number of sites scoring better than the average of aligned sites = 3533 Number in coding regions = 3312 Number in noncoding regions = 221 Number of orfs with sites within 600 bp upstream = 211 Fraction of orfs with sites within 600 bp upstream = 0.0338901 Motif number 6 ATAGCATCGTGCTAACACGGGACTAACGGG 3 32 0 GCTAACACGG 0.941767 -154 GGGTTCCGCACCGAACACGGACGCGGCCTC 3 67 0 CCGAACACGG 0.954097 -119 GTACCGGCACCCTAACAGGGCCCCCGGCCA 5 75 1 CCTAACAGGG 0.822496 -82 CCCACTGTGGGCCCACAGGGGGCGCCTTGG 6 154 0 GCCCACAGGG 0.987529 -59 ACGCCAGACCGCCCACTGTGGGCCCACAGG 6 165 0 GCCCACTGTG 0.668343 -48 ACATGCGTCGGCGTACACGGTCAATATGCA 8 53 0 GCGTACACGG 0.939724 -160 GTGGACAGCAGCCCACACATAGCGGTATCT 8 169 1 GCCCACACAT 0.523761 -44 ATGAGCCCCGCCGCACCGGGCCGTTTCCAA 13 70 1 CCGCACCGGG 0.937651 -231 TGGTTGTTTAGCCAACAAGGATGACAACAA 13 262 1 GCCAACAAGG 0.941767 -39 GCCGGGATTCCCGCACTAGGGTGAGGACTG 14 252 1 CCGCACTAGG 0.756747 -49 CACAGCCGCGACCAACTCGGGAACAAAACC 15 31 1 ACCAACTCGG 0.668538 -270 TCAAATTGGTGCGCACCGAGGGTCGGGCAC 15 146 0 GCGCACCGAG 0.876288 -155 ACCAATTTGAGCCAACTCAGGAAATGAATC 15 166 1 GCCAACTCAG 0.85982 -135 ACATGCTGAGGCGCACACGGTCGCTCGCAG 15 233 1 GCGCACACGG 0.987529 -68 TGACCGGTGTGCCGACCCGGCGGTGCCGGC 16 57 1 GCCGACCCGG 0.95958 -51 ACCTGTTCCCGCCGACCCGGTTAAGTTGGA 18 15 0 GCCGACCCGG 0.95958 -87 TGGTAGGTTAGCCTACAGGGC 19 2 0 GCCTACAGGG 0.939724 -46 CGGACGCTCCTAACAAAGCAAGTGCTTG 19 30 0 CCTAACAAAG 0.233376 -18 ********** Masking position 5 Map Score: 19.4441 Number of sites scoring better than the average of aligned sites = 4854 Number in coding regions = 4503 Number in noncoding regions = 351 Number of orfs with sites within 600 bp upstream = 294 Fraction of orfs with sites within 600 bp upstream = 0.0472213 Motif number 7 GGGCTGGGGCTATGGTGAGGGAGCCGCCGCCG 3 157 1 TTGGTGAGGA 0.835754 -29 ACACCAGACACAAGCTGAGTAGTCCGACCGCT 6 120 1 CAGCTGAGTG 0.9521 -93 GGTTTCGTTGTCTGCTGTGGCGTCGGGCGG 7 9 0 TTGCTGTGGG 0.924979 -93 TCCTCCGGGCCCTGCTGAGGCAATGCGTTCGG 8 125 0 CTGCTGAGGA 0.964606 -88 CGGAGGAAGCCTTGGCGAGGTGGACAGCAGCC 8 150 1 CTGGCGAGGG 0.962842 -63 ATCTGGAAGACATGTTGAGGAGACGTCC 8 195 1 CTGTTGAGGG 0.949542 -18 TGACAACAAATAAGCCGAGGAGAGACAA 13 283 1 TAGCCGAGGG 0.928011 -18 GACTGATCATCTTGCTGACTCGAGGACTGAAT 14 277 1 CTGCTGACTG 0.858038 -24 CAGAGATTCATTTCCTGAGTTGGCTCAAATTG 15 168 0 TTCCTGAGTG 0.779816 -133 AATGAATCTCTGAGCGGAGGTGCACCGGTTGC 15 188 1 TAGCGGAGGG 0.875076 -113 CTCAGCATGTCGTTGTGAGGCGGGCAACCGGT 15 211 0 CTTGTGAGGG 0.842885 -90 CTCACAACGACATGCTGAGGCGCACACGGTCG 15 224 1 CTGCTGAGGG 0.995379 -77 CCGTCGCGACTATGCTGAGTCGTC 16 94 1 TTGCTGAGTG 0.970848 -14 * ******** * Masking position 7 Map Score: 12.1763 Number of sites scoring better than the average of aligned sites = 1141 Number in coding regions = 999 Number in noncoding regions = 142 Number of orfs with sites within 600 bp upstream = 152 Fraction of orfs with sites within 600 bp upstream = 0.0244137 Motif number 8 TCACGATTTGGCACCTGACAGCAA 1 4 1 CGATTGGCAC 0.902861 -27 CGTCCGTGTTCGGTGCGGAACCCGCCGGCCC 3 74 1 CGGGCGGAAC 0.894054 -112 CCACAAAAGGGGGTTTGGATCCTTCTTCAAG 5 34 1 GGGTTGGATC 0.865785 -123 CATCGTCGCCCGGATAGGCTCGACCGCC 5 139 1 CGGTAGGCTC 0.947595 -18 ACCGGCCCAACGGCTTGGTTCGACCGGCTCC 6 22 0 CGGTTGGTTC 0.954506 -191 TACACGTCGACCACTTGGCACATGCGTCGGC 8 71 0 CCATTGGCAC 0.556984 -142 TTACGCGTCCCGGTATGGAACTTGGTAAACG 10 55 1 CGGATGGAAC 0.831641 -116 CGTAGCTGTGGGGGTTGGACCCCAGATGTCC 10 91 1 GGGTTGGACC 0.664979 -80 GACTTGGCTTCGGGTTGAAACTAGCGCACCG 10 131 0 CGGTTGAAAC 0.700974 -40 CATACTGTATCCGGTGGGTACGCAAGGCACG 11 90 0 CCGTGGGTAC 0.8493 -107 CGGCCCGGTGCGGCGGGGCTCATGTTCCCCA 13 62 0 CGGGGGGCTC 0.968666 -239 AGGGACGCGGCGGCTGGGATCGGTGGGGTGA 13 146 1 CGGTGGGATC 0.973912 -155 TCACAGGGCCCGGATGGGTACCCGGATATGC 14 209 1 CGGTGGGTAC 0.976561 -92 GCCTGACCGGCGGTTTTGTTCCCGAGTTGGT 15 41 0 CGGTTTGTTC 0.647238 -260 TGCGCACCGAGGGTCGGGCACATCGCACGGC 15 136 0 GGGCGGGCAC 0.798154 -165 AATCTCTGAGCGGAGGTGCACCGGTTGCCCG 15 192 1 CGGGGTGCAC 0.815402 -109 AACCAGACCGCGGGTAGGCGCGG 16 3 0 CGGTAGGCGC 0.847651 -105 CCGGCACCGCCGGGTCGGCACACCGGTCAAC 16 55 0 CGGTCGGCAC 0.978587 -53 *** ******* Masking position 11 Map Score: 18.3922 Number of sites scoring better than the average of aligned sites = 3904 Number in coding regions = 3580 Number in noncoding regions = 324 Number of orfs with sites within 600 bp upstream = 285 Fraction of orfs with sites within 600 bp upstream = 0.0457758 Motif number 9 CCGCCTCCTTGCCCCACCCCCGTTAGTCCCG 3 14 1 GCCCCACCCC 0.969328 -172 CGTGTTCGGTGCGGAACCCGCCGGCCCCGGG 3 78 1 GCGGAACCCC 0.583348 -108 CATAGCCCCAGCCCGTCCCGCAGCCCCGCAT 3 140 0 GCCCGTCCCC 0.952943 -46 GACGTCCCAACATACCGGCCATCAC 4 5 1 TCCCAACATC 0.229149 -91 CCAACATACCGGCCATCACGCACAGGCCGAC 4 17 1 GGCCATCACC 0.531559 -79 ATCACGCACAGGCCGACAAGCTCGGTTGCGG 4 31 1 GGCCGACAAC 0.563278 -65 TGAAGAAGGATCCAAACCCCCTTTTGTGGAA 5 32 0 TCCAAACCCC 0.727568 -125 CTAGGTCCCGTACCGGCACCCTAACAGGGCC 5 66 1 TACCGGCACC 0.234668 -91 CTAACAGGGCCCCCGGCCAACCTGTTGGTTG 5 86 1 CCCCGGCCAC 0.753072 -71 GCGATACCTTGCCCAACCAACAGGTTGGCCG 5 99 0 GCCCAACCAC 0.965221 -58 GCCCGGATAGGCTCGACCGCC 5 146 1 GCTCGACCGC 0.84159 -11 CATGGGTAAGGCCCAACACCAGACACAAGCT 6 105 1 GCCCAACACA 0.782414 -108 TATGGGCAACGCCAGACCGCCCACTGTGGGC 6 172 0 GCCAGACCGC 0.882969 -41 CCGCCCGACGCCACAGCAGACAA 7 3 1 GCCCGACGCA 0.59181 -99 CGGGTGCTGCCCCCAGCCGGC 9 1 0 CCCCAGCCGC 0.804924 -32 GACATCTGGGGTCCAACCCCCACAGCTACGA 10 90 0 GTCCAACCCC 0.923891 -81 CCAGGCTCCCGCCGTGCCCGCGACAACGATG 11 52 0 GCCGTGCCCC 0.759047 -145 TGGGCCACAATTCCGACACGCGCGATAGTTA 11 143 0 TTCCGACACC 0.425517 -54 CGGAATTGTGGCCCACGCCACGTCGGCGGCG 11 159 1 GCCCACGCCC 0.762915 -38 ACCCCACCGATCCCAGCCGCCGCGTCCCTAC 13 144 0 TCCCAGCCGC 0.87932 -157 GAAGCCGGGCGCTCACCCCACCGATCCCAGC 13 158 0 GCTCACCCCC 0.808499 -143 TAAGCCGGCCGCCCGACCCGCACCACACTTC 14 65 1 GCCCGACCCC 0.991033 -236 CGTAACCCGCGCGCTACCCACGCTTCGCATT 14 176 0 GCGCTACCCC 0.801812 -125 AACGCCCGCCTCCAATCCCGCACAGCCGCGA 15 11 1 TCCAATCCCC 0.325589 -290 AGCGACAGCTGCCTGACCGGCGGTTTTGTTC 15 51 0 GCCTGACCGC 0.613746 -250 CACCCGATGTGCCCGGCTCTCAGCGACAGCT 15 72 0 GCCCGGCTCC 0.949145 -229 CGTGCGATGTGCCCGACCCTCGGTGCGCACC 15 138 1 GCCCGACCCC 0.997335 -163 TGCACCGGTTGCCCGCCTCACAACGACATGC 15 208 1 GCCCGCCTCC 0.904666 -93 ACCGCGGGCAGCCCAGCCAACCAGACCGCGG 16 21 0 GCCCAGCCAC 0.952949 -87 GGCGGTGCCGGCCCTACCGCCGTCGCGACTA 16 75 1 GCCCTACCGC 0.93761 -33 TGTGCCCGACACACTGCCGGGCGC 17 88 0 GCCCGACACC 0.989201 -14 GCACAACCACGGCCGCCCCGCACCTGTTCCC 18 35 0 GGCCGCCCCC 0.922583 -67 TGAGTACACCGCCCAGCACAACCACGGCCGC 18 50 0 GCCCAGCACA 0.724082 -52 ********* * Masking position 7 Map Score: 46.1973 Number of sites scoring better than the average of aligned sites = 8699 Number in coding regions = 8079 Number in noncoding regions = 620 Number of orfs with sites within 600 bp upstream = 481 Fraction of orfs with sites within 600 bp upstream = 0.0772567 Motif number 10 GACAGCCTTTCTCGCGGCGAAAGTCGCACA 2 26 1 CTCGCGGCGA 0.975213 -83 TAACACGGGACTAACGGGGGTGGGGCAAGG 3 20 0 CTAACGGGGG 0.435689 -166 TAGCACGATGCTATCGGTTGAGGCCGCGTC 3 48 1 CTATCGGTTG 0.319349 -138 CGGCCATCCCCTAACGGCGCCCCGGGGCCG 3 99 0 CTAACGGCGC 0.422188 -87 TGGGCAAGGTATCGCTGCGGCGCGCATCGT 5 115 1 ATCGCTGCGG 0.660398 -42 GTGATGGTGGCTGGCGGCGTGGACAGCGCA 6 52 0 CTGGCGGCGT 0.549495 -161 GCAGCACCCGCTCGCGGCGGA 9 22 1 CTCGCGGCGG 0.997137 -11 TCAACCTCCGATCGCGGTGGATCTGATCGG 10 12 1 ATCGCGGTGG 0.887413 -159 CCGCGGTAGGGACGCGGCGGCTGGGATCGG 13 139 1 GACGCGGCGG 0.886754 -162 TTGTCTCTCCTCGGCTTATTTGTT 13 287 0 CTCTCCTCGG 0.543013 -14 GGCCGGCTTAATCGCGGTGATAATCGGTTG 14 45 0 ATCGCGGTGA 0.467835 -256 TGCGGCACTGCAAGCGCCGGGATTCCCGCA 14 237 1 CAAGCGCCGG 0.594984 -64 TCCCGAGTTGGTCGCGGCTGTGCGGGATTG 15 23 0 GTCGCGGCTG 0.821133 -278 ATGTGCCCGGCTCTCAGCGACAGCTGCCTG 15 67 0 CTCTCAGCGA 0.611989 -234 GGAAATGAATCTCTGAGCGGAGGTGCACCG 15 185 1 CTCTGAGCGG 0.431303 -116 CACACGGTCGCTCGCAGCCGGGCACAACGA 15 246 1 CTCGCAGCCG 0.710473 -55 CCGCGCCTACCCGCGGTCTGGTTGGC 16 7 1 CTACCCGCGG 0.5446 -101 GGCTGGGCTGCCCGCGGTGGTGTTGACCGG 16 34 1 CCCGCGGTGG 0.912142 -74 ACTCAGCATAGTCGCGACGGCGGTAGGGCC 16 84 0 GTCGCGACGG 0.742903 -24 GCCGAATTCACTATCGGCGG 17 1 0 CTATCGGCGG 0.97245 -101 GCCGAATTCACTATCGGCGGGCGCCCGCGC 17 56 1 CTATCGGCGG 0.97245 -46 TCGGCGGGCGCCCGCGCCGGCGCCCGGCAG 17 69 1 CCCGCGCCGG 0.852456 -33 GGCGCGGTCCTCTCGTTGGAGTCAGCAGC 18 83 0 CTCTCGTTGG 0.638408 -19 ********** Masking position 5 Map Score: 18.0681 Number of sites scoring better than the average of aligned sites = 13676 Number in coding regions = 12586 Number in noncoding regions = 1090 Number of orfs with sites within 600 bp upstream = 720 Fraction of orfs with sites within 600 bp upstream = 0.115644 Motif number 11 TGGAACCCCTGCATAACCTGCTCATCCTGAC 2 59 0 GCATAACTGC 0.400582 -50 CGCACCGAACACGGACGCGGCCTCAACCGAT 3 60 0 ACGGACGGGC 0.764251 -126 CGTGTTCGGTGCGGAACCCGCCGGCCCCGGG 3 78 1 GCGGAACCGC 0.843656 -108 CTGGCGTTGCCCATAAGTAGCATCAAGGGGT 6 188 1 CCATAAGAGC 0.782662 -25 CAATGCTTGCCCAGAGCCTGCTGAAACCACA 7 52 0 CCAGAGCTGC 0.917491 -50 TCAGCAGGGCCCGGAGGAAGCCTTGGCGAGG 8 139 1 CCGGAGGAGC 0.975792 -74 CCCCAGATGTCCGTCCGGTGCCGGTGCGCTA 10 110 1 CCGTCCGTGC 0.916129 -61 GAAGCCAAGTCCGTAAGGAGCAGAACCGAC 10 151 1 CCGTAAGAGC 0.930978 -20 TGTCGCGGGCACGGCGGGAGCCTGGGCAGTA 11 58 1 ACGGCGGAGC 0.775105 -139 GGAGCCTGGGCAGTAGCGTGCCTTGCGTACC 11 74 1 CAGTAGCTGC 0.562297 -123 CTCATGTTCCCCATAGGATGCTGACAATTGA 13 44 0 CCATAGGTGC 0.907323 -257 CCCACCGATCCCAGCCGCCGCGTCCCTACCG 13 142 0 CCAGCCGCGC 0.817573 -159 CTCTTACCGGCCGAAGGCGGCGGGTGTCACT 13 212 1 CCGAAGGGGC 0.766194 -89 ACGTCGAACACCGTACGTCGCAGAAGTGTGG 14 87 0 CCGTACGCGC 0.9662 -214 GCCCTGTGAAACGTAACCCGCGCGCTACCCA 14 187 0 ACGTAACCGC 0.756801 -114 TGCGGGAATCCCGGCGCTTGCAGTGCCGCAT 14 236 0 CCGGCGCTGC 0.955293 -65 GAATTCGGCGCCGGAACACGCCCGGGTTCTT 17 22 1 CCGGAACCGC 0.967811 -80 ******* *** Masking position 10 Map Score: 12.9698 Number of sites scoring better than the average of aligned sites = 9421 Number in coding regions = 8727 Number in noncoding regions = 694 Number of orfs with sites within 600 bp upstream = 505 Fraction of orfs with sites within 600 bp upstream = 0.0811115 Motif number 12 CTCGCGGCGAAAGTCGCACAGATGTCAGGA 2 36 1 AAGTCGCACA 0.741777 -73 CCGCAGCGATACCTTGCCCAACCAACAGGT 5 105 0 ACCTTGCCCA 0.963641 -52 CTGGTGTTGGGCCTTACCCATGCTGCGAGA 6 97 0 GCCTTACCCA 0.71921 -116 GGGCGGTCTGGCGTTGCCCATAAGTAGCAT 6 181 1 GCGTTGCCCA 0.977109 -32 TTGCACATACACGTCGACCACTTGGCACAT 8 79 0 ACGTCGACCA 0.951248 -134 CTGATACTAGACGTTGCACATACACGTCGA 8 92 0 ACGTTGCACA 0.971879 -121 GCTGCTGTCCACCTCGCCAAGGCTTCCTCC 8 151 0 ACCTCGCCAA 0.707524 -62 GCTACGACTGACGTTTACCAAGTTCCATAC 10 67 0 ACGTTTACCA 0.744491 -104 CGAACACCGTACGTCGCAGAAGTGTGGTGC 14 84 0 ACGTCGCAGA 0.8238 -217 TGCTGGGGCTACGTCGAACACCGTACGTCG 14 98 0 ACGTCGAACA 0.898352 -203 CGTAACCCGCGCGCTACCCACGCTTCGCAT 14 177 0 GCGCTACCCA 0.55884 -124 CGCGCGGGTTACGTTTCACAGGGCCCGGAT 14 194 1 ACGTTTCACA 0.856622 -107 ********** Masking position 10 Map Score: 6.62504 Number of sites scoring better than the average of aligned sites = 2915 Number in coding regions = 2742 Number in noncoding regions = 173 Number of orfs with sites within 600 bp upstream = 164 Fraction of orfs with sites within 600 bp upstream = 0.0263412 Motif number 13 AACGGCGCCCCGGGGCCGGCGGGTTCCGCA 3 87 0 CGGGGCCGGC 0.817518 -99 ATGCGGGGCTGCGGGACGGGCTGGGGCTAT 3 140 1 GCGGGACGGG 0.805747 -46 GGCTGGTCGGCGGCGGCTCCC 3 175 0 GCTGGTCGGC 0.922536 -11 CCGCAACCGAGCTTGTCGGCCTGTGCGTGA 4 32 0 GCTTGTCGGC 0.828212 -64 CAACCAACAGGTTGGCCGGGGGCCCTGTTA 5 87 0 GTTGGCCGGG 0.838645 -70 CGGCCAACCTGTTGGTTGGGCAAGGTATCG 5 99 1 GTTGGTTGGG 0.388428 -58 GCCCGGATAGGCTCGACCGCC 5 146 1 GCTCGACCGC 0.19391 -11 TGGCTGGCGGCGTGGACAGCGCACCGGCCC 6 45 0 CGTGGACAGC 0.602908 -168 TGCCGGTGATGGTGGCTGGCGGCGTGGACA 6 57 0 GGTGGCTGGC 0.813087 -156 CAGGGGGCGCCTTGGTCAGCGGTCGGACTA 6 139 0 CTTGGTCAGC 0.639473 -74 GCATATTGACCGTGTACGCCGACGCATGTG 8 54 1 CGTGTACGCC 0.190971 -159 GCATGTGCCAAGTGGTCGACGTGTATGTGC 8 77 1 AGTGGTCGAC 0.13329 -136 GCCTTGGCGAGGTGGACAGCAGCCCACACA 8 158 1 GGTGGACAGC 0.755288 -55 AGCTGTGGGGGTTGGACCCCAGATGTCCGT 10 94 1 GTTGGACCCC 0.505606 -77 CACTGATCTAGGCTGACGGCCAGTGGTTGT 13 239 1 GGCTGACGGC 0.43866 -62 GGCATCATCGGTTGGCCGGCG 14 2 0 GTTGGCCGGC 0.85543 -299 GTGATAATCGGTTGGTCGGCGATCACCGGC 14 29 0 GTTGGTCGGC 0.978134 -272 TGTGGTGCGGGTCGGGCGGCCGGCTTAATC 14 62 0 GTCGGGCGGC 0.881646 -239 TGCGACGTACGGTGTTCGACGTAGCCCCAG 14 96 1 GGTGTTCGAC 0.186826 -205 TTGTTCCCGAGTTGGTCGCGGCTGTGCGGG 15 27 0 GTTGGTCGCG 0.731568 -274 GCGACAGCTGCCTGACCGGCGGTTTTGTTC 15 51 0 CCTGACCGGC 0.334586 -250 AGGTGCACCGGTTGCCCGCCTCACAACGAC 15 205 1 GTTGCCCGCC 0.347516 -96 CAACCAGACCGCGGGTAGGCGCGG 16 5 0 GCGGGTAGGC 0.574359 -103 GGTCTGGTTGGCTGGGCTGCCCGCGGTGGT 16 25 1 GCTGGGCTGC 0.709328 -83 GCCGGCACCGCCGGGTCGGCACACCGGTCA 16 57 0 CCGGGTCGGC 0.9249 -51 ATTCACTATCGGCGGGCGCCCGCGCCGGCG 17 61 1 GGCGGGCGCC 0.717161 -41 CCGACACACTGCCGGGCGCCGGCGCGGGCG 17 77 0 GCCGGGCGCC 0.621943 -25 ACCCGGTTAAGTTGGACGCC 18 1 0 GTTGGACGCC 0.917147 -101 TCCAACTTAACCGGGTCGGCGGGAACAGGT 18 15 1 CCGGGTCGGC 0.9249 -87 GGGAACAGGTGCGGGGCGGCCGTGGTTGTG 18 35 1 GCGGGGCGGC 0.895855 -67 CCGTGGTTGTGCTGGGCGGTGTACTCACCG 18 54 1 GCTGGGCGGT 0.706562 -48 CAAGTGCTTGGTAGGTTAGCCTACAGGGC 19 10 0 GTAGGTTAGC 0.0258816 -38 ********** Masking position 4 Map Score: 29.3938 Number of sites scoring better than the average of aligned sites = 30905 Number in coding regions = 29046 Number in noncoding regions = 1859 Number of orfs with sites within 600 bp upstream = 1026 Fraction of orfs with sites within 600 bp upstream = 0.164793 Motif number 14 GGTTCCGCACCGAACACGGACGCGGCCTCAA 3 65 0 CGACACGGAC 0.816409 -121 TACCGGCCATCACGCACAGGCCGACAAGCTC 4 23 1 CACCACAGGC 0.707105 -73 AAGACTAGGTCCCGTACCGGCACCCTAACAG 5 62 1 CCCTACCGGC 0.730874 -95 CGGCGTGGACAGCGCACCGGCCCAACGGCTT 6 37 0 AGCCACCGGC 0.922872 -176 CCGCCAGCCACCATCACCGGCAGCCGGCGTT 6 65 1 CCACACCGGC 0.993053 -148 ATGCTGCGAGACAACGCCGGCTGCCGGTGAT 6 77 0 ACACGCCGGC 0.869497 -136 ATGCTATGTGCAGGCACCGACAACAATGCTT 7 75 0 CAGCACCGAC 0.75172 -27 ACATACACGTCGACCACTTGGCACATGCGTC 8 74 0 CGACACTTGG 0.212297 -139 CGCGTAACCTGGAGCACCGCCCGATCAGATC 10 31 0 GGACACCGCC 0.755224 -140 GGTTGAAACTAGCGCACCGGCACCGGACGGA 10 119 0 AGCCACCGGC 0.922872 -52 AGTTCCTTTTCGACCATCGGCTCAATTGTCA 13 23 1 CGACATCGGC 0.939968 -278 GTTGGCTAAACAACCACTGGCCGTCAGCCTA 13 247 0 CAACACTGGC 0.927371 -54 GGTTGGTCGGCGATCACCGGCATCATCGGTT 14 19 0 CGACACCGGC 0.99531 -282 GGGGCTACGTCGAACACCGTACGTCGCAGAA 14 93 0 CGACACCGTA 0.331172 -208 TGCGGCACTGCAAGCGCCGGGATTCCCGCAC 14 237 1 CAACGCCGGG 0.809402 -64 GCGTTCCCAACATCGGCGCGGCAGAGC 15 284 0 CCACATCGGC 0.913393 -17 CCGGTCAACACCACCGCGGGCAGCCCAGCCA 16 33 0 CCACGCGGGC 0.926962 -75 GGCGGTAGGGCCGGCACCGCCGGGTCGGCAC 16 65 0 CCGCACCGCC 0.916098 -43 GACACACTGCCGGGCGCCGGCGCGGGCGCCC 17 74 0 CGGCGCCGGC 0.968239 -28 CCGCCCAGCACAACCACGGCCGCCCCGCACC 18 42 0 CAACACGGCC 0.8083 -60 GCTAACCTACCAAGCACTTGCTTTGTTAGGA 19 20 1 CAACACTTGC 0.485081 -28 *** ******* Masking position 5 Map Score: 24.9907 Number of sites scoring better than the average of aligned sites = 13650 Number in coding regions = 12918 Number in noncoding regions = 732 Number of orfs with sites within 600 bp upstream = 552 Fraction of orfs with sites within 600 bp upstream = 0.0886605 Motif number 15 TGGGTGGATCGGAGTCGTCAGGAGGAACGT 4 73 1 GGAGTCGTCA 0.945866 -23 CCGGGCAGCATAGACGGCAAGCCGGATTG 8 10 1 ATAGACGGCA 0.475598 -203 GACATGTTGAGGAGACGTCC 8 203 1 GGAGACGTCC 0.979844 -10 ATGGAACTTGGTAAACGTCAGTCGTAGCTG 10 69 1 GTAAACGTCA 0.526509 -102 GTCACCATTTGGAAACGGCCCGGTGCGGCG 13 78 0 GGAAACGGCC 0.922799 -223 GTTTCCAAATGGTGACGTCACAACGGTGTC 13 92 1 GGTGACGTCA 0.955608 -209 ACTGATCTAGGCTGACGGCCAGTGGTTGTT 13 240 1 GCTGACGGCC 0.9153 -61 CGGCTTATTTGTTGTCATCCTTGTTGGCTA 13 270 0 GTTGTCATCC 0.548666 -31 GGGCACATCGGGTGTCGCCCGGTGCAGTGA 15 89 1 GGTGTCGCCC 0.910918 -212 CCGACCCGGCGGTGCCGGCCCTACCGCCGT 16 68 1 GGTGCCGGCC 0.952585 -40 TCCTCTCGTTGGAGTCAGCAGCGGTGAGTA 18 75 0 GGAGTCAGCA 0.811061 -27 ********** Masking position 6 Map Score: 4.90599 Number of sites scoring better than the average of aligned sites = 6492 Number in coding regions = 6145 Number in noncoding regions = 347 Number of orfs with sites within 600 bp upstream = 304 Fraction of orfs with sites within 600 bp upstream = 0.0488275