AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00770_mtub_reg_300.orf -o00770_mtub_300.ace -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 PE_PGRS 277 PE_PGRS #2 Rv0110 147 hypothetical protein Rv0110 #3 Rv0111 180 hypothetical protein Rv0111 #4 gca 281 gca #5 gmhA 73 gmhA #6 ilvD 147 ilvD #7 coaA 300 coaA #8 ilvG 70 ilvG #9 ilvE 71 ilvE #10 panB 300 panB #11 acpS 192 acpS #12 fas 300 fas #13 ilvC 37 ilvC #14 ilvB 300 ilvB #15 Rv3510c 300 hypothetical protein Rv3510c #16 Rv3603c 184 hypothetical protein Rv3603c #17 ftsH 66 ftsH Motif number 1 CGTCGAGGTGGCGCACCACGCAGAGTGTTC 1 68 0 GCGCACCACG 0.920427 -210 GCGCCACCTCGACGCGGAGGCACCAGCGGG 1 84 1 GACGCGGAGG 0.599968 -194 CCAGCGGGTTGGCCGCGGCGGGCTCGCTCT 1 106 1 GGCCGCGGCG 0.993271 -172 ATTGTGACCAGCTGCCGGAGCGGGAATGCG 1 152 1 GCTGCCGGAG 0.65625 -126 GGCGCAACGTGCCCCGGAAGCCGCGCTACA 1 208 1 GCCCCGGAAG 0.93331 -70 CTGCGCCGTTGGGCGGGATGCAACACGC 2 9 0 GGGCGGGATG 0.921608 -139 CACCATTGTTGCCTGCGCCGTTGGGCGGGA 2 21 0 GCCTGCGCCG 0.768075 -127 TAGGTCCGGCGCCCGGGATGGCGATAGCAG 2 85 0 GCCCGGGATG 0.97855 -63 CACATCGGGTGCAGCGGACGTAGGTCCGGC 2 105 0 GCAGCGGACG 0.77197 -43 CAAGAGGAGGGGCAGCGACGTATCGGCAGC 3 89 1 GGCAGCGACG 0.757648 -92 AGCAAGCACTGCGCCGGACGACGAAGTGGT 3 116 1 GCGCCGGACG 0.983096 -65 ACGACGAAGTGGTCAGGGCGCGCTAACAGC 3 133 1 GGTCAGGGCG 0.948476 -48 CGAGAGCTGAGCCGGGCGGGATTCACTCC 3 162 1 GCCGGGCGGG 0.960494 -19 CTCATCCGGAGCACACGGCGGA 4 3 0 GCACACGGCG 0.810254 -279 TGCTCCGGATGAGCGCGACGGTAACCCTGG 4 20 1 GAGCGCGACG 0.827456 -262 GACGAGCCGCGGCCTCGCTGCAAACATTGA 4 112 1 GGCCTCGCTG 0.653399 -170 CACAACGAGGGCGCTCCCCGATCTGGCGCG 4 168 1 GCGCTCCCCG 0.703396 -114 CCGATCTGGCGCGCGCAACGAGGTGCGCAC 4 185 1 GCGCGCAACG 0.888969 -97 ACTCCTTGATGCTCAGGCCGGTGCGGTTTG 4 236 1 GCTCAGGCCG 0.9337 -46 CCAAGGATGCGCTCGCCGCGGCACGGTTGC 6 112 0 GCTCGCCGCG 0.963482 -36 GTTCAAGTATGCGGCCCAAGGATGCGCTCG 6 127 0 GCGGCCCAAG 0.492497 -21 GTCACGAGTAGCGGTGGGCGGTTTGTGCCC 7 80 1 GCGGTGGGCG 0.876991 -221 AATTTCGCACGCTGACGCCGGTTGATGCTG 7 116 0 GCTGACGCCG 0.866089 -185 TGGGCACTGGGGCCAGGGCGCGGTGTTTCG 7 170 0 GGCCAGGGCG 0.988458 -131 GCCCAGCTAAGCCCAGGGGGTACCCCCGGC 7 195 1 GCCCAGGGGG 0.974757 -106 TCGGTGCCGAGGGCCGGGGGTACCCCCTGG 7 207 0 GGGCCGGGGG 0.943954 -94 TGATGGCTGGGCTGGCGAAGTGCGGTGCTG 7 249 0 GCTGGCGAAG 0.698269 -52 AGGGACGGGTGCGGGGCCTGATGGCTGGGC 7 267 0 GCGGGGCCTG 0.730695 -34 GTCACCACTTGGTGGCAGCGGAGTGGCCTC 9 11 1 GGTGGCAGCG 0.702229 -61 GGTTATTGACGGCCCGGAGGCCACTCCGCT 9 27 0 GGCCCGGAGG 0.970222 -45 TCCAGATCAAGGCGAGGCCGCGGTTTCGGA 10 36 0 GGCGAGGCCG 0.960648 -265 GCGGCTCAGTGGCCTGGACGCCAGTTGCTG 10 148 0 GGCCTGGACG 0.945811 -153 GCCGATGGGGGCCCCGGGCGCGTCTGAGGG 10 195 1 GCCCCGGGCG 0.994944 -106 GGCCCGTTAGGGTCCCCGGGTTCGTCGGAC 10 247 0 GGTCCCCGGG 0.769686 -54 GACCCTAACGGGCCACGAGGATCGACCCGA 10 263 1 GGCCACGAGG 0.942123 -38 CTGCCGTTGGGCGCCGAACGTGCGCTCAGG 11 13 1 GCGCCGAACG 0.848783 -180 CCGAACGTGCGCTCAGGGCGACGGTGTTCG 11 26 1 GCTCAGGGCG 0.964011 -167 GTGTATCCATGGCGGCGACACGCCGAACAC 11 49 0 GGCGGCGACA 0.659836 -144 ATGGATACACGCTCGCCGCGTGCTCCTTGG 11 69 1 GCTCGCCGCG 0.963482 -124 CCTCCCGCTTGCGGGGGACGGACCGAAGAG 11 115 0 GCGGGGGACG 0.981454 -78 AGCGGGAGGTGCCCCCAACGCGGACCGCAT 11 136 1 GCCCCCAACG 0.927107 -57 GGCCCAGTCCGGCGACGATGCGGTCCGCGT 11 153 0 GGCGACGATG 0.832545 -40 GGGCGGCCACGTTAATCGATG 11 182 0 GGCGGCCACG 0.970699 -11 CGGGTTCGACGGCCGGCGCGTATGTGTTGA 12 22 0 GGCCGGCGCG 0.989476 -279 GGCCGATGCAGCCCGTCGCGCTGCTCGACC 12 144 1 GCCCGTCGCG 0.77909 -157 GTTGTCGGTGGGCCGGCCCGTGGGTCGAGC 12 166 0 GGCCGGCCCG 0.981139 -135 AGTCGGGGATGCCCCGCACGGCAGCCTGGG 12 233 1 GCCCCGCACG 0.984249 -68 TCGTACAGCGGCCCAGGCTGCCGTGCGGGG 12 244 0 GCCCAGGCTG 0.919804 -57 AGGCCGGAAAGCCCGGGATGCTCGTAGTAA 14 152 1 GCCCGGGATG 0.97855 -149 CGTAGTAATTGGTCGGCGCGTTGGTGCCTG 14 174 1 GGTCGGCGCG 0.955099 -127 CAGCAGCTGAGCTGGCGAGGGTTTTTTCTT 14 238 1 GCTGGCGAGG 0.888304 -63 CGGCGTTCGTGGCCACGCGGTGCTTCGCCT 15 92 0 GGCCACGCGG 0.922201 -209 GGCCACGAACGCCGGGAGGGACAATCTCGG 15 108 1 GCCGGGAGGG 0.853483 -193 AGAAGCCCTAGCCGCCCGAGATTGTCCCTC 15 123 0 GCCGCCCGAG 0.78199 -178 CTCGCGGGAAGGCCCGAACGTACGGCGTTT 15 151 1 GGCCCGAACG 0.911453 -150 TTCGCGGTCGGAGGGCGACGCGACGTGTTG 15 181 0 GAGGGCGACG 0.721715 -120 ATCATCGCCCGGCCAGGGTGCTACCAGGTT 15 228 0 GGCCAGGGTG 0.937492 -73 GACTACCCGCGGCGACGCTGCAGATCATCG 15 251 0 GGCGACGCTG 0.783586 -50 GGTAGTCGCCGCCCGGGCGGCTACAGTCTG 15 274 1 GCCCGGGCGG 0.983091 -27 AGTGTCGGTTGCCGGCGGCAATCGGGCGGG 16 35 0 GCCGGCGGCA 0.796194 -150 AATCAGCAGTGCCCCGGGTGGGTCTTGACG 16 81 1 GCCCCGGGTG 0.974088 -104 GGAAGGACCTGGCCGGCACGGCCGATGATC 17 46 1 GGCCGGCACG 0.986232 -21 ********** Masking position 1 Map Score: 97.2654 Number of sites scoring better than the average of aligned sites = 70004 Number in coding regions = 66045 Number in noncoding regions = 3959 Number of orfs with sites within 600 bp upstream = 1376 Fraction of orfs with sites within 600 bp upstream = 0.221009 Motif number 2 GCTGGTGCCTCCGCGTCGAGGTGGCGCACC 1 81 0 CCGCGTCGAG 0.811359 -197 CGCGGCCAACCCGCTGGTGCCTCCGCGTCG 1 93 0 CCGCTGGTGC 0.868891 -185 AGCGGGTTGGCCGCGGCGGGCTCGCTCTTG 1 108 1 CCGCGGCGGG 0.965669 -170 ACACGCATTCCCGCTCCGGCAGCTGGTCAC 1 155 0 CCGCTCCGGC 0.985652 -123 GACGTAGGTCCGGCGCCCGGGATGGCGATA 2 89 0 CGGCGCCCGG 0.655145 -59 TTAGATGTGACCGCGTCGGATTCCCCGAAG 3 47 0 CCGCGTCGGA 0.817839 -134 AGGGGCAGCGACGTATCGGCAGCAAGCACT 3 96 1 ACGTATCGGC 0.351168 -85 ACGAAGTGGTCAGGGCGCGCTAACAGCGAG 3 136 1 CAGGGCGCGC 0.793184 -45 CCGCCCGGCTCAGCTCTCGCTGTTAGCGCG 3 151 0 CAGCTCTCGC 0.475855 -30 GAGAGCTGAGCCGGGCGGGATTCACTCC 3 163 1 CCGGGCGGGA 0.712106 -18 TCCGCCGTGTGCTCCGGATGAGCG 4 5 1 CCGTGTGCTC 0.76963 -277 GTTTGACGAGCCGCGGCCTCGCTGCAAACA 4 108 1 CCGCGGCCTC 0.982965 -174 ACAAACCCAGACGTGCGGGCTTCAATGTTT 4 133 0 ACGTGCGGGC 0.873692 -149 TCTCGACAAACCGCACCGGCCTGAGCATCA 4 242 0 CCGCACCGGC 0.975933 -40 ATATCTTGTACCCCAGCGGGGTATCGGACC 6 73 1 CCCCAGCGGG 0.838703 -75 GGCAACCGTGCCGCGGCGAGCGCATCCTTG 6 111 1 CCGCGGCGAG 0.928552 -37 CTAGTGGCTGCCGTTTGCGGTGCAGACGTG 7 31 0 CCGTTTGCGG 0.567178 -270 ACCTACGTGGCAGCTGGGGCACTAGTGGCT 7 52 0 CAGCTGGGGC 0.847636 -249 CGATGGAATTCAGCTGTGGCCCTGTGAATT 7 142 0 CAGCTGTGGC 0.518031 -159 CATCGAAACACCGCGCCCTGGCCCCAGTGC 7 167 1 CCGCGCCCTG 0.553068 -134 AGGGGGTACCCCCGGCCCTCGGCACCGACA 7 209 1 CCCGGCCCTC 0.81413 -92 TCTTGCAGGGACGGGTGCGGGGCCTGATGG 7 273 0 ACGGGTGCGG 0.43799 -28 GGAGGCCACTCCGCTGCCACCAAGTGGTGA 9 12 0 CCGCTGCCAC 0.817037 -60 GGAGTGGCCTCCGGGCCGTCAATAACCGTT 9 30 1 CCGGGCCGTC 0.961996 -42 CCGATTCTATCCGTGGGCGAACGGTTATTG 9 49 0 CCGTGGGCGA 0.636064 -23 TTTTCCGAAACCGCGGCCTCGCCTTGATCT 10 33 1 CCGCGGCCTC 0.982965 -268 AGAACGCGTCACGCAGCCGGTCAAAGGCGT 10 69 1 ACGCAGCCGG 0.700621 -232 TGCAGCGGCTCAGTGGCCTGGACGCCAGTT 10 152 0 CAGTGGCCTG 0.487455 -149 CGCCCGGGGCCCCCATCGGCATACCATCGC 10 185 0 CCCCATCGGC 0.792394 -116 CCGATGGGGGCCCCGGGCGCGTCTGAGGGG 10 196 1 CCCCGGGCGC 0.968731 -105 CCGTTAGGGTCCCCGGGTTCGTCGGACCCT 10 244 0 CCCCGGGTTC 0.658857 -57 TGGGCGCCGAACGTGCGCTCAGGGCGACGG 11 20 1 ACGTGCGCTC 0.592087 -173 TACACGCTCGCCGCGTGCTCCTTGGCCTGA 11 74 1 CCGCGTGCTC 0.923829 -119 GGGGCACCTCCCGCTTGCGGGGGACGGACC 11 121 0 CCGCTTGCGG 0.772392 -72 ACGATGCGGTCCGCGTTGGGGGCACCTCCC 11 139 0 CCGCGTTGGG 0.843143 -54 CCAACGCGGACCGCATCGTCGCCGGACTGG 11 150 1 CCGCATCGTC 0.821178 -43 CGCATCGTCGCCGGACTGGGCCATCGATTA 11 161 1 CCGGACTGGG 0.516345 -32 CCATCGATTAACGTGGCCGCCC 11 181 1 ACGTGGCCGC 0.872097 -12 GTCAACACATACGCGCCGGCCGTCGAACCC 12 21 1 ACGCGCCGGC 0.975663 -280 GTACGGGTAACCGTGTCGTGGGTAACGCCG 12 50 0 CCGTGTCGTG 0.761802 -251 GCCGATGCAGCCCGTCGCGCTGCTCGACCC 12 145 1 CCCGTCGCGC 0.727609 -156 TGCTCGACCCACGGGCCGGCCCACCGACAA 12 165 1 ACGGGCCGGC 0.929546 -136 ATCCCCGACTCCGCACCGACTCCCAGCCGA 12 213 0 CCGCACCGAC 0.840722 -88 GCCCAGGCTGCCGTGCGGGGCATCCCCGAC 12 234 0 CCGTGCGGGG 0.853333 -67 AGGAGAGATTCAGCGGTGGCACTAGAG 13 21 1 CAGCGGTGGC 0.827665 -17 TGGGATTTCGCAGTGCCGTCACGCTCGCGG 14 56 1 CAGTGCCGTC 0.743738 -245 CAGTGCCGTCACGCTCGCGGATCAAGACTG 14 66 1 ACGCTCGCGG 0.689768 -235 GCAGTCAAATCCGCGGTGTCAGTCTTGATC 14 85 0 CCGCGGTGTC 0.909882 -216 TACGAGCATCCCGGGCTTTCCGGCCTTGTC 14 148 0 CCGGGCTTTC 0.370503 -153 TCAGGCACCAACGCGCCGACCAATTACTAC 14 175 0 ACGCGCCGAC 0.795484 -126 CTCGCCAGCTCAGCTGCTGCACGAGGGTCG 14 227 0 CAGCTGCTGC 0.564796 -74 GATCATAATTCAGCACCCGCCCAATACGTC 15 16 1 CAGCACCCGC 0.839254 -285 AAAGGCGAAGCACCGCGTGGCCACGAACGC 15 90 1 CACCGCGTGG 0.311191 -211 GATTGTCCCTCCCGGCGTTCGTGGCCACGC 15 104 0 CCCGGCGTTC 0.415626 -197 CCGCGAGAAGCCCTAGCCGCCCGAGATTGT 15 128 0 CCCTAGCCGC 0.683693 -173 GAAACGCCGTACGTTCGGGCCTTCCCGCGA 15 152 0 ACGTTCGGGC 0.607552 -149 CCTGGTAGCACCCTGGCCGGGCGATGATCT 15 230 1 CCCTGGCCGG 0.85579 -71 CGGCGACTACCCGCGGCGACGCTGCAGATC 15 255 0 CCGCGGCGAC 0.963705 -46 GTAGTCGCCGCCCGGGCGGCTACAGTCTGA 15 275 1 CCCGGGCGGC 0.95461 -26 CGGCGCCGCTTGTGCCAGGGTGTAC 16 6 1 CCGCTTGTGC 0.690875 -179 ATCAGCAGTGCCCCGGGTGGGTCTTGACGT 16 82 1 CCCCGGGTGG 0.770826 -103 TGCCCGGGTACCGGACGGTCACCAAGACTG 16 124 0 CCGGACGGTC 0.770107 -61 CTGGACTTTCCAGCTGCGTGTATCGGGAAG 17 21 1 CAGCTGCGTG 0.528881 -46 CGATCATCGGCCGTGCCGGCCAGGTCCTTC 17 47 0 CCGTGCCGGC 0.987211 -20 ********** Masking position 1 Map Score: 81.9183 Number of sites scoring better than the average of aligned sites = 93140 Number in coding regions = 87130 Number in noncoding regions = 6010 Number of orfs with sites within 600 bp upstream = 1631 Fraction of orfs with sites within 600 bp upstream = 0.261966 Motif number 3 GCCTCCGCGTCGAGGTGGCGCACCACGCAG 1 75 0 CGAGGTGGCG 0.866613 -203 GCGGGTTGGCCGCGGCGGGCTCGCTCTTGG 1 109 1 CGCGGCGGGC 0.984808 -169 CTGTCCAACACGCATTCCCGCTCCGGCAGC 1 162 0 CGCATTCCCG 0.601293 -116 GTTGGACAGCCGAATCCCCGCAATTGGCGC 1 183 1 CGAATCCCCG 0.723927 -95 ATTGGCGCAACGTGCCCCGGAAGCCGCGCT 1 205 1 CGTGCCCCGG 0.911396 -73 AGGAGCCAAATGTAGCGCGGCTTCCGGGGC 1 218 0 TGTAGCGCGG 0.66912 -60 GCGTGTTGCATCCCGCCCAACGGCGC 2 7 1 TGCATCCCGC 0.563701 -141 GCGACTCCGATGAGCTGGCGCCACTCATCG 2 51 0 TGAGCTGGCG 0.54619 -97 CGGACGTAGGTCCGGCGCCCGGGATGGCGA 2 91 0 TCCGGCGCCC 0.724842 -57 CAGCGAGAGCTGAGCCGGGCGGGATTCACT 3 159 1 TGAGCCGGGC 0.809474 -22 TCCGCCGTGTGCTCCGGATGAGCGCGA 4 8 1 TGTGCTCCGG 0.331781 -274 ATGTTTGCAGCGAGGCCGCGGCTCGTCAAA 4 109 0 CGAGGCCGCG 0.525155 -173 CTGCAAACATTGAAGCCCGCACGTCTGGGT 4 129 1 TGAAGCCCGC 0.561522 -153 GCGCGCGCAACGAGGTGCGCACTATCCATT 4 193 1 CGAGGTGCGC 0.746989 -89 CTCGACAAACCGCACCGGCCTGAGCATCAA 4 241 0 CGCACCGGCC 0.965795 -41 TATCTTGTACCCCAGCGGGGTATCGGACCT 6 74 1 CCCAGCGGGG 0.886987 -74 ATTTGGCAACCGTGCCGCGGCGAGCGCATC 6 107 1 CGTGCCGCGG 0.931419 -41 GTTGATGCTGTGAGTCGGGCACAAACCGCC 7 96 0 TGAGTCGGGC 0.660072 -205 ACTCACAGCATCAACCGGCGTCAGCGTGCG 7 111 1 TCAACCGGCG 0.374733 -190 ATCGAAACACCGCGCCCTGGCCCCAGTGCC 7 168 1 CGCGCCCTGG 0.779102 -133 GCGCCCTGGCCCCAGTGCCCAGCTAAGCCC 7 179 1 CCCAGTGCCC 0.501722 -122 GCTGGGCTGGCGAAGTGCGGTGCTGGCAGA 7 244 0 CGAAGTGCGG 0.623184 -57 CATCAGGCCCCGCACCCGTCCCTGCAAGAC 7 274 1 CGCACCCGTC 0.355524 -27 CAGATCAAGGCGAGGCCGCGGTTTCGGAAA 10 34 0 CGAGGCCGCG 0.525155 -267 GAACGCGTCACGCAGCCGGTCAAAGGCGTA 10 70 1 CGCAGCCGGT 0.653984 -231 CCATCGCGCATGCAGCGGCTCAGTGGCCTG 10 162 0 TGCAGCGGCT 0.420095 -139 TCCCCTCAGACGCGCCCGGGGCCCCCATCG 10 197 0 CGCGCCCGGG 0.922112 -104 CAGGGTCCGACGAACCCGGGGACCCTAACG 10 243 1 CGAACCCGGG 0.881517 -58 GGTCGATCCTCGTGGCCCGTTAGGGTCCCC 10 260 0 CGTGGCCCGT 0.475831 -41 CGGTGTTCGGCGTGTCGCCGCCATGGATAC 11 47 1 CGTGTCGCCG 0.88084 -146 CCAAGGAGCACGCGGCGAGCGTGTATCCAT 11 69 0 CGCGGCGAGC 0.812307 -124 ATCTCTTCGGTCCGTCCCCCGCAAGCGGGA 11 113 1 TCCGTCCCCC 0.41042 -80 CGATGCGGTCCGCGTTGGGGGCACCTCCCG 11 138 0 CGCGTTGGGG 0.846503 -55 CAACGCGGACCGCATCGTCGCCGGACTGGG 11 151 1 CGCATCGTCG 0.567078 -42 TAATCGATGGCCCAGTCCGGCGACGATGCG 11 161 0 CCCAGTCCGG 0.434718 -32 CATCGATTAACGTGGCCGCCC 11 182 1 CGTGGCCGCC 0.934295 -11 TCAACACATACGCGCCGGCCGTCGAACCCG 12 22 1 CGCGCCGGCC 0.983708 -279 CGCCGGCCGTCGAACCCGGCGTTACCCACG 12 34 1 CGAACCCGGC 0.861304 -267 TACGGGTAACCGTGTCGTGGGTAACGCCGG 12 49 0 CGTGTCGTGG 0.448167 -252 CGCGACGGGCTGCATCGGCCTTATAAGAGT 12 134 0 TGCATCGGCC 0.757979 -167 GCCGATGCAGCCCGTCGCGCTGCTCGACCC 12 145 1 CCCGTCGCGC 0.76039 -156 GCTCGACCCACGGGCCGGCCCACCGACAAC 12 166 1 CGGGCCGGCC 0.725569 -135 GTGGGCGTCGAGTTCGCGAGCGTAACGC 14 9 1 CGAGTTCGCG 0.632263 -292 TGCGAATTTTCGCGGTGGCGTTACGCTCGC 14 26 0 CGCGGTGGCG 0.946716 -275 CATGGGATTTCGCAGTGCCGTCACGCTCGC 14 54 1 CGCAGTGCCG 0.850902 -247 CAGGCACCAACGCGCCGACCAATTACTACG 14 174 0 CGCGCCGACC 0.797131 -127 GTGCAGCAGCTGAGCTGGCGAGGGTTTTTT 14 235 1 TGAGCTGGCG 0.54619 -66 AAAGCTTGGACGTATTGGGCGGGTGCTGAA 15 24 0 CGTATTGGGC 0.426021 -277 CGAAGCACCGCGTGGCCACGAACGCCGGGA 15 95 1 CGTGGCCACG 0.427113 -206 CGCGAGAAGCCCTAGCCGCCCGAGATTGTC 15 127 0 CCTAGCCGCC 0.672337 -174 TTCAACACGTCGCGTCGCCCTCCGACCGCG 15 179 1 CGCGTCGCCC 0.947013 -122 CTGGTAGCACCCTGGCCGGGCGATGATCTG 15 231 1 CCTGGCCGGG 0.577512 -70 GGCGATGATCTGCAGCGTCGCCGCGGGTAG 15 249 1 TGCAGCGTCG 0.477268 -52 CGTTTCAGACTGTAGCCGCCCGGGCGGCGA 15 279 0 TGTAGCCGCC 0.702027 -22 CCCTGGCACAAGCGGCGCCG 16 1 0 AGCGGCGCCG 0.544632 -184 TGTGCCAGGGTGTACCCGCCCGATTGCCGC 16 21 1 TGTACCCGCC 0.642198 -164 CACGTCAAGACCCACCCGGGGCACTGCTGA 16 83 0 CCCACCCGGG 0.819811 -102 GATCATCGGCCGTGCCGGCCAGGTCCTTCC 17 46 0 CGTGCCGGCC 0.95423 -21 ********** Masking position 2 Map Score: 72.0383 Number of sites scoring better than the average of aligned sites = 103695 Number in coding regions = 96555 Number in noncoding regions = 7140 Number of orfs with sites within 600 bp upstream = 1683 Fraction of orfs with sites within 600 bp upstream = 0.270318 Motif number 4 CGCGGAGGCACCAGCGGGTTGGCCGCGGCGGGCT 1 96 1 CCAGCGTGCC 0.831271 -182 CTGGCGACCACCCAAGAGCGAGCCCGCCGCGGCC 1 116 0 CCCAAGCGCC 0.886489 -162 CGCAACGTGCCCCGGAAGCCGCGCTACATTTGGC 1 210 1 CCCGGGCCGC 0.986003 -68 CTCCTAGCCACCAGACAGCTTGCCCGAAAACGGC 1 243 1 CCAGAGCGCC 0.96354 -35 CTATCGCCATCCCGGGCGCCGGACCTACGTCCGC 2 88 1 CCCGGGCGAC 0.86188 -60 CGTCGGATTCCCCGAAGACACGCGAAGACAAGCG 3 30 0 CCCGAACGCG 0.876064 -151 TCGCGCTCATCCGGAGCACACGGCGGA 4 4 0 CCGGAACGGC 0.493119 -278 TCCGGATGAGCGCGACGGTAACCCTGGAATTGTG 4 23 1 CGCGAGTCCC 0.932445 -259 AACATTGAAGCCCGCACGTCTGGGTTTGTATTTA 4 134 1 CCCGCGTGGG 0.617336 -148 ATTTACACAACGAGGGCGCTCCCCGATCTGGCGC 4 163 1 CGAGGGCCCC 0.794225 -119 TACTCGCCAACCCGAAAGCAGGGCCCAGGCATGC 6 31 1 CCCGAGCGGC 0.992482 -117 TCGTGACCTACGTGGCAGCTGGGGCACTAGTGGC 7 53 0 CGTGGGCGGG 0.713191 -248 CCAGCTAAGCCCAGGGGGTACCCCCGGCCCTCGG 7 197 1 CCAGGGTCCC 0.857064 -104 GGGTGCGGGGCCTGATGGCTGGGCTGGCGAAGTG 7 257 0 CCTGAGCGGC 0.953004 -44 GGCGAAGGTACCCGAAGGTTGTCGATAGGCTGCC 8 44 1 CCCGAGTTCG 0.637727 -27 TTATTGACGGCCCGGAGGCCACTCCGCTGCCACC 9 21 0 CCCGGGCCTC 0.883232 -51 CCGCTGCATGCGCGATGGTATGCCGATGGGGGCC 10 174 1 CGCGAGTGCC 0.952565 -127 CGATGGGGGCCCCGGGCGCGTCTGAGGGGAAGAA 10 197 1 CCCGGGCCTG 0.812211 -104 TTCGTCGGACCCTGACAGTCTGCCACTTCTTCCC 10 223 0 CCTGAGTGCC 0.918265 -78 CGTTAGGGTCCCCGGGTTCGTCGGACCCTGACAG 10 239 0 CCCGGTCCGG 0.66328 -62 TGCTCCTTGGCCTGACTGCCCGGCATCTCTTCGG 11 89 1 CCTGAGCGGC 0.95299 -104 GGGGGCACCTCCCGCTTGCGGGGGACGGACCGAA 11 118 0 CCCGCGCGGG 0.970712 -75 CGCTGCTCGACCCACGGGCCGGCCCACCGACAAC 12 162 1 CCCACGCGCC 0.774021 -139 TCGGGGATGCCCCGCACGGCAGCCTGGGCCGCTG 12 235 1 CCCGCGGGCC 0.823722 -66 GCGTCGAGTTCGCGAGCGTAACGCCACCGCGAAA 14 15 1 CGCGAGTCGC 0.913721 -286 AGTCTTGATCCGCGAGCGTGACGGCACTGCGAAA 14 61 0 CGCGAGTCGG 0.836845 -240 ATGGACAAGGCCGGAAAGCCCGGGATGCTCGTAG 14 145 1 CCGGAGCGGG 0.616806 -156 CAAGCTTTCTCGTGAGTACCACCCGTGTAATTTG 15 46 1 CGTGAACCCC 0.264102 -255 GCCCTAGCCGCCCGAGATTGTCCCTCCCGGCGTT 15 115 0 CCCGATTCCC 0.716314 -186 CGCGGGAAGGCCCGAACGTACGGCGTTTCAACAC 15 153 1 CCCGAGTGGC 0.979597 -148 TGCTGCCATCCCCGAATGTTCGCGGTCGGAGGGC 15 195 0 CCCGAGTGCG 0.704805 -106 GCCGCTTGTGCCAGGGTGTACCCGCCCGATTGCC 16 15 1 CCAGGGTCCG 0.77517 -170 GGTGTACCCGCCCGATTGCCGCCGGCAACCGACA 16 29 1 CCCGAGCCCG 0.985508 -156 ***** ** *** Masking position 1 Map Score: 62.2509 Number of sites scoring better than the average of aligned sites = 13814 Number in coding regions = 12747 Number in noncoding regions = 1067 Number of orfs with sites within 600 bp upstream = 712 Fraction of orfs with sites within 600 bp upstream = 0.114359 Motif number 5 AATTGCCTTACTGTGTTTCGCGTGGAGTCAAACG 1 22 0 CTGTGCGGTG 0.909507 -256 TTGGCCGCGGCGGGCTCGCTCTTGGGTGGTCGCC 1 114 1 CGGGCCTTTG 0.915176 -164 GCTGCCGGAGCGGGAATGCGTGTTGGACAGCCGA 1 162 1 CGGGACGGTT 0.627821 -116 GCGCCAATTGCGGGGATTCGGCTGTCCAACACGC 1 179 0 CGGGGCGCTG 0.947196 -99 GCGCGGCTTCCGGGGCACGTTGCGCCAATTGCGG 1 200 0 CGGGGGTGCG 0.872941 -78 GTGCTGTGTGCTGGCTGTGTCGTTGTGATGAGCC 4 54 1 CTGGCGTGTT 0.871044 -228 TGTGATGAGCCTGTCTAAGTGGTGCGTAACCGTT 4 77 1 CTGTCGTGTG 0.909402 -205 GCCCGCACGTCTGGGTTTGTATTTACACAACGAG 4 143 1 CTGGGGTTTT 0.694022 -139 CCGAATGTCTTTGTCCTGCCAACCTGAG 5 5 1 ATGTCGTCTG 0.138072 -69 GCCCTGCTTTCGGGTTGGCGAGTATCTCTGGAGA 6 21 0 CGGGTCGGTA 0.256248 -127 AGACGTGCAACGGTGGATGGCGTGTGC 7 4 0 CGGTGGGGTG 0.976284 -297 TACGTGGCAGCTGGGGCACTAGTGGCTGCCGTTT 7 45 0 CTGGGCTGTG 0.932241 -256 TCACGAGTAGCGGTGGGCGGTTTGTGCCCGACTC 7 81 1 CGGTGGGTTG 0.928132 -220 CACTGGGGCCAGGGCGCGGTGTTTCGATGGAATT 7 162 0 AGGGCGTTTT 0.210054 -139 TCACCACTTGGTGGCAGCGGAGTGGCCTCCGGGC 9 12 1 GTGGCGGGTG 0.52613 -60 CAGCGCACTGCTGGCAAGCTTTTTCCGAAACCGC 10 13 1 CTGGCCTTTT 0.580582 -288 CTTTGACCGGCTGCGTGACGCGTTCTGACTCCAG 10 61 0 CTGCGCGGTT 0.462836 -240 GTCACGCAGCCGGTCAAAGGCGTAACCCATGCTC 10 76 1 CGGTCGGGTA 0.7295 -225 CTCAGGGCGACGGTGTTCGGCGTGTCGCCGCCAT 11 37 1 CGGTGGGGTG 0.976286 -156 CTCCCGCTTGCGGGGGACGGACCGAAGAGATGCC 11 110 0 CGGGGGGCCG 0.76023 -83 GGCGACGATGCGGTCCGCGTTGGGGGCACCTCCC 11 139 0 CGGTCGTGGG 0.640203 -54 TCATAAGGATCGGTCCACCTTGTTTACACAGATC 12 99 0 CGGTCCTGTT 0.857649 -202 GACAACACACCGGTCAGAGGATTTCGGCTGGGAG 12 190 1 CGGTCGGTTT 0.805526 -111 AGAGATTCAGCGGTGGCACTAGAG 13 24 1 CGGTGCTGAG 0.456396 -14 GTCAAATCCGCGGTGTCAGTCTTGATCCGCGAGC 14 78 0 CGGTGGTTTG 0.9002 -223 AGCAGCTGAGCTGGCGAGGGTTTTTTCTTGTCCA 14 239 1 CTGGCGGTTT 0.75209 -62 CTCTATTGCTCTGGAAGTCTCGTTGGTGGACAAG 14 265 0 CTGGACTGTT 0.30569 -36 CGTGGCCACGCGGTGCTTCGCCTTTTTGCCCATC 15 81 0 CGGTGCGCTT 0.758577 -220 GCACCCTGGCCGGGCGATGATCTGCAGCGTCGCC 15 237 1 CGGGCGACTG 0.575505 -64 CGGCGCCGCTTGTGCCAGGGTGTA 16 1 1 CGGCGCTGTG 0.824268 -184 GCAACCGACACTGTTGGTGTAGTGACCAAATCAG 16 53 1 CTGTTGTGTG 0.500378 -132 CAGCAGTGCCCCGGGTGGGTCTTGACGTGCAAAT 16 84 1 CCGGGGTTTG 0.510281 -101 GTCCGGTACCCGGGCATGGGACTGGAACGAACCA 16 138 1 CGGGCGGCTG 0.962341 -47 ***** ** *** Masking position 3 Map Score: 25.5903 Number of sites scoring better than the average of aligned sites = 16030 Number in coding regions = 14919 Number in noncoding regions = 1111 Number of orfs with sites within 600 bp upstream = 765 Fraction of orfs with sites within 600 bp upstream = 0.122872 Motif number 6 GAGGCACCAGCGGGTTGGCCGCGGCGGGCTCGCT 1 100 1 CGGTGGGCGG 0.694492 -178 ATTCCCGCTCCGGCAGCTGGTCACAATCACTGGC 1 145 0 CGGGCTTCAC 0.57526 -133 CGATGAGTGGCGCCAGCTCATCGGAGTCGCCCAC 2 51 1 CGCGCTTCGG 0.791724 -97 TCGGAGTCGCCCACCTGCTATCGCCATCCCGGGC 2 71 1 CCATGCTCGC 0.348991 -77 GTCCGCTGCACCCGATGTGATCGGTACATCTGTG 2 116 1 CCCTGTTCGG 0.889807 -32 AAACCGATAGCCGCTTGTCTTCGCGTGTCTTCGG 3 19 1 CCGTGTTCGC 0.941094 -162 AGAGCTGAGCCGGGCGGGATTCACTCC 3 164 1 CGGGGGTCAC 0.848372 -17 TCCGCCGTGTGCTCCGGATGAGCGCG 4 3 1 CGCTGTTCCG 0.391487 -279 TGCAGCGAGGCCGCGGCTCGTCAAACGGTTACGC 4 100 0 CCGGCTTCAA 0.302299 -182 AGCATGCCTGGGCCCTGCTTTCGGGTTGGCGAGT 6 32 0 GGCTGCTCGG 0.4489 -116 TCTTGTACCCCAGCGGGGTATCGGACCTAGAATT 6 76 1 CAGGGGTCGG 0.879104 -72 TAGCGGTGGGCGGTTTGTGCCCGACTCACAGCAT 7 88 1 CGGTGTCCGA 0.707389 -213 CCAGGGGGTACCCCCGGCCCTCGGCACCGACACG 7 207 1 CCCGGCTCGG 0.893036 -94 GCGAAGGTACCCGAAGGTTGTCGATAGGCTGCCG 8 45 1 CCGGGTTCGA 0.946449 -26 TTGGTGGCAGCGGAGTGGCCTCCGGGCCGTCAAT 9 19 1 CGGTGGTCCG 0.505975 -53 CCGATTCTATCCGTGGGCGAACGGTTATTGACGG 9 45 0 CCGGGCACGG 0.829166 -27 CGCCTTTGACCGGCTGCGTGACGCGTTCTGACTC 10 64 0 CGGGCGACGC 0.643635 -237 GGGCCCCCATCGGCATACCATCGCGCATGCAGCG 10 175 0 CGGTACTCGC 0.339454 -126 CGTTAGGGTCCCCGGGTTCGTCGGACCCTGACAG 10 239 0 CCCGTTTCGG 0.3172 -62 CCCTGCCGTTGGGCGCCGAACGTGCGCTC 11 6 1 CCGGGGCCGA 0.798966 -187 TGCGCTCAGGGCGACGGTGTTCGGCGTGTCGCCG 11 33 1 GCGGGTTCGG 0.883849 -160 CCTGACTGCCCGGCATCTCTTCGGTCCGTCCCCC 11 99 1 CGGTCTTCGG 0.866376 -94 CAACACATACGCGCCGGCCGTCGAACCCGGCGTT 12 23 1 GCGGGCTCGA 0.609324 -278 ATCCTCTGACCGGTGTGTTGTCGGTGGGCCGGCC 12 178 0 CGGTGTTCGG 0.970966 -123 CAGAGGATTTCGGCTGGGAGTCGGTGCGGAGTCG 12 204 1 CGGGGGTCGG 0.937965 -97 CGAATTTTCGCGGTGGCGTTACGCTCGCGAACTC 14 20 0 CGGGCGACGC 0.643614 -281 CATGGGATTTCGCAGTGCCGTCACGCTCGCGGAT 14 54 1 CGCTGCTCAC 0.362418 -247 CACGAGGGTCGCGTTGGTGCTCGCTTGGGCTAGT 14 204 0 GCGGGTTCGC 0.871309 -97 CCAAATTACACGGGTGGTACTCACGAGAAAGCTT 15 47 0 CGGGGTTCAC 0.860475 -254 AGGCGAAGCACCGCGTGGCCACGAACGCCGGGAG 15 92 1 CCGTGGACGA 0.56132 -209 GCTGCCATCCCCGAATGTTCGCGGTCGGAGGGCG 15 194 0 CCGTGTGCGG 0.80146 -107 TGCAGCGTCGCCGCGGGTAGTCGCCGCCCGGGCG 15 259 1 CCGGGTTCGC 0.970015 -42 CGCGTTTCAGACTGTAGCCGCCCGGGCGGCG 15 280 0 CAGTGTCCGC 0.45625 -21 CCGCTTGTGCCAGGGTGTACCCGCCCGATTGCCG 16 16 1 CAGTGTCCGC 0.456438 -169 GTGTCGGTTGCCGGCGGCAATCGGGCGGGTACAC 16 30 0 CCGGGCTCGG 0.531565 -155 AGCAGTGCCCCGGGTGGGTCTTGACGTGCAAATC 16 85 1 CGGGGGTTGA 0.280218 -100 *** *** **** Masking position 12 Map Score: 42.4342 Number of sites scoring better than the average of aligned sites = 19994 Number in coding regions = 18551 Number in noncoding regions = 1443 Number of orfs with sites within 600 bp upstream = 877 Fraction of orfs with sites within 600 bp upstream = 0.140861 Motif number 7 AGGGAACACTCTGCGTGGTGCGCCACCTCGA 1 65 1 CGCGTGGTGC 0.944142 -213 GACGTAGGTCCGGCGCCCGGGATGGCGATAG 2 88 0 CGCGCCCGGG 0.840224 -60 GTCCGGCGCAGTGCTTGCTGCCGATACGTCG 3 104 0 GGCTTGCTGC 0.489065 -77 CTGACCACTTCGTCGTCCGGCGCAGTGCTTG 3 118 0 CTCGTCCGGC 0.799227 -63 CTCGCTGTTAGCGCGCCCTGACCACTTCGTC 3 135 0 GGCGCCCTGA 0.655178 -46 ACAGCGAGAGCTGAGCCGGGCGGGATTCACT 3 158 1 CGAGCCGGGC 0.462927 -23 TCCGCCGTGTGCTCCGGATGAGCGC 4 5 1 CGTGTGCTCC 0.728961 -277 TGGAATTGTGCTGTGTGCTGGCTGTGTCGTT 4 47 1 CGTGTGCTGG 0.671875 -235 TTTACACAACGAGGGCGCTCCCCGATCTGGC 4 164 1 GGGGCGCTCC 0.786338 -118 CCTTGATGCTCAGGCCGGTGCGGTTTGTCGA 4 239 1 CGGCCGGTGC 0.617313 -43 CCGAATGTCTTTGTCCTGCCAACCTGAGG 5 9 1 CTTGTCCTGC 0.748197 -65 GGTAGCATGCCTGGGCCCTGCTTTCGGGTTG 6 38 0 CGGGCCCTGC 0.984112 -110 AGTGGCTGCCGTTTGCGGTGCAGACGTGCAA 7 28 0 GTTGCGGTGC 0.592558 -273 CATCGAAACACCGCGCCCTGGCCCCAGTGCC 7 167 1 CGCGCCCTGG 0.912609 -134 GCCCTGGCCCCAGTGCCCAGCTAAGCCCAGG 7 181 1 CGTGCCCAGC 0.865117 -120 TGGCAGACTCCGTGTCGGTGCCGAGGGCCGG 7 220 0 CTGTCGGTGC 0.516996 -81 TGGGCTGGCGAAGTGCGGTGCTGGCAGACTC 7 241 0 AGTGCGGTGC 0.386909 -60 TTGCAGGGACGGGTGCGGGGCCTGATGGCTG 7 270 0 GGTGCGGGGC 0.710022 -31 AGCTTGCCAGCAGTGCGCTGAA 10 2 0 CGTGCGCTGA 0.855431 -299 AGTCAGAACGCGTCACGCAGCCGGTCAAAGG 10 65 1 CTCACGCAGC 0.203534 -236 GATGGGGGCCCCGGGCGCGTCTGAGGGGAAG 10 198 1 CGGGCGCGTC 0.617786 -103 AGCGCACGTTCGGCGCCCAACGGCAGGG 11 8 0 CGCGCCCAAC 0.461639 -185 CGCCGAACACCGTCGCCCTGAGCGCACGTTC 11 28 0 CTCGCCCTGA 0.721183 -165 CGGTGTTCGGCGTGTCGCCGCCATGGATACA 11 47 1 CTGTCGCCGC 0.202602 -146 TACACGCTCGCCGCGTGCTCCTTGGCCTGAC 11 74 1 CGCGTGCTCC 0.877445 -119 CGATGCAGCCCGTCGCGCTGCTCGACCCACG 12 147 1 CTCGCGCTGC 0.980486 -154 GCCCAGGCTGCCGTGCGGGGCATCCCCGACT 12 233 0 CGTGCGGGGC 0.917702 -68 CCAACGCGACCCTCGTGCAGCAGCTGAGCTG 14 221 1 CTCGTGCAGC 0.726942 -80 GACGTATTGGGCGGGTGCTGAATTATGATCC 15 15 0 GGGGTGCTGA 0.399363 -286 GCGTTCGTGGCCACGCGGTGCTTCGCCTTTT 15 89 0 CACGCGGTGC 0.671283 -212 CAACACGTCGCGTCGCCCTCCGACCGCGAAC 15 181 1 CTCGCCCTCC 0.804023 -120 AGGGTGCTACCAGGTTGCTGCCATCCCCGAA 15 213 0 CGGTTGCTGC 0.745178 -88 ATCGCCCGGCCAGGGTGCTACCAGGTTGCTG 15 224 0 CGGGTGCTAC 0.618745 -77 CGCTGCAGATCATCGCCCGGCCAGGGTGCTA 15 235 0 CTCGCCCGGC 0.932847 -66 AAGACCCACCCGGGGCACTGCTGATTTGGTC 16 76 0 CGGGCACTGC 0.803154 -109 * ********* Masking position 8 Map Score: 33.217 Number of sites scoring better than the average of aligned sites = 32695 Number in coding regions = 30451 Number in noncoding regions = 2244 Number of orfs with sites within 600 bp upstream = 1062 Fraction of orfs with sites within 600 bp upstream = 0.170575 Motif number 8 GGTTGGCCGCGGCGGGCTCGCTCTTGGGTGGTC 1 112 1 GCGGCTCCTC 0.925511 -166 GCCGTTTTCGGGCAAGCTGTCTGGTGGCTAGGA 1 244 0 GCAACTGCTG 0.234817 -34 ATGTGACCGCGTCGGATTCCCCGAAGACACGCG 3 40 0 GCGGTTCCCG 0.773738 -141 GGATGAGCGCGACGGTAACCCTGGAATTGTGCT 4 26 1 GCGGAACCTG 0.861587 -256 TTTGACGAGCCGCGGCCTCGCTGCAAACATTGA 4 109 1 CCGGCTCCTG 0.936411 -173 GATTGACCGTAACGGACTCTCAGTATCGACAAA 5 49 1 ACGGCTCCAG 0.954767 -25 GGCGGTTTGTGCCCGACTCACAGCATCAACCGG 7 96 1 GCCGCTCCAG 0.976042 -205 GTGCGGTGCTGGCAGACTCCGTGTCGGTGCCGA 7 227 0 GCAGCTCGTG 0.649748 -74 GGTGTCAGTCTTGCAGGGACGGGTGC 7 285 0 GCAGCTTCAG 0.673334 -16 TTGACGGCCCGGAGGCCACTCCGCTGCCACCAA 9 19 0 GAGGCACCCG 0.693722 -53 TGTGTCTGGAAACGTCCACTCAGCCCATGCATG 10 117 0 ACGTCACCAG 0.546922 -184 GGGAAGAAGTGGCAGACTGTCAGGGTCCGACGA 10 223 1 GCAGCTGCAG 0.914942 -78 TTGGGCGCCGAACGTGCGCTCAGGGCGACGGTG 11 19 1 ACGTCGCCAG 0.341691 -174 CCGAAGAGATGCCGGGCAGTCAGGCCAAGGAGC 11 90 0 GCGGCAGCAG 0.969726 -103 GGCCGATGCAGCCCGTCGCGCTGCTCGACCCAC 12 144 1 GCCGCGCCTG 0.89269 -157 CCCGACTCCGCACCGACTCCCAGCCGAAATCCT 12 207 0 CCCGCTCCAG 0.846324 -94 GAAGGCTACCGTCGGACACTATGGACAAGGCCG 14 125 1 GCGGCACATG 0.904217 -176 TATGGACAAGGCCGGAAAGCCCGGGATGCTCGT 14 144 1 GCGGAAGCCG 0.534302 -157 GCTTGGGCTAGTCAGGCACCAACGCGCCGACCA 14 183 0 GCAGCACAAC 0.291434 -118 CCGGGTACCGGACGGTCACCAAGACTGTAGTCG 16 118 0 GCGGCACAAG 0.935917 -67 AGCAGACGGCCTCACAGGTTTCTTGGT 16 168 0 GCGGCTCCAG 0.994098 -17 * *** *** *** Masking position 3 Map Score: 15.93 Number of sites scoring better than the average of aligned sites = 12316 Number in coding regions = 11593 Number in noncoding regions = 723 Number of orfs with sites within 600 bp upstream = 529 Fraction of orfs with sites within 600 bp upstream = 0.0849663 Motif number 9 GCGCCCGGGATGGCGATAGCAGGTGGGCGA 2 77 0 TGGCGATAGC 0.481476 -71 GGTACATCTGTGGCGAATGT 2 138 1 TGGCGAATGT 0.7802 -10 CTCTTGATCGTGGCGAGTTTAGATGTGACC 3 65 0 TGGCGAGTTT 0.903065 -116 CTCCCCGATCTGGCGCGCGCAACGAGGTGC 4 181 1 TGGCGCGCGC 0.955276 -101 TCTCTGGAGATGGCGAGTAA 6 1 0 TGGCGAGTAA 0.783017 -147 GCTTTCGGGTTGGCGAGTATCTCTGGAGAT 6 20 0 TGGCGAGTAT 0.945599 -128 AACCGTGCCGCGGCGAGCGCATCCTTGGGC 6 114 1 CGGCGAGCGC 0.969052 -34 CAACGGTGGATGGCGTGTGC 7 1 0 TGGCGTGTGC 0.933765 -300 AAGGAGCACGCGGCGAGCGTGTATCCATGG 11 67 0 CGGCGAGCGT 0.943955 -126 GTTCGACGGCCGGCGCGTATGTGTTGACCA 12 19 0 CGGCGCGTAT 0.788563 -282 GATCGGTTACTGGCGAGTTCTACGTACGGG 12 73 0 TGGCGAGTTC 0.945415 -228 GCAGCTGAGCTGGCGAGGGTTTTTTCTTGT 14 240 1 TGGCGAGGGT 0.918293 -61 TGGACGTATTGGGCGGGTGCTGAATTATGA 15 18 0 GGGCGGGTGC 0.93654 -283 GGCGGCAATCGGGCGGGTACACCCTGGCAC 16 22 0 GGGCGGGTAC 0.826391 -163 ********** Masking position 4 Map Score: 14.5497 Number of sites scoring better than the average of aligned sites = 2302 Number in coding regions = 2113 Number in noncoding regions = 189 Number of orfs with sites within 600 bp upstream = 166 Fraction of orfs with sites within 600 bp upstream = 0.0266624 Motif number 10 GCAACAATGGTGCGATGAGTGGCGCCAGCTC 2 39 1 TGGATGAGTG 0.86011 -109 ACCCTGGAATTGTGCTGTGTGCTGGCTGTGT 4 43 1 TGGCTGTGTG 0.990906 -239 TGCTCAGGCCGGTGCGGTTTGTCGAGAAAGG 4 245 1 GGGCGGTTTG 0.916977 -37 CGAGTAGCGGTGGGCGGTTTGTGCCCGACTC 7 84 1 TGGCGGTTTG 0.972896 -217 CAAACATGCATGGGCTGAGTGGACGTTTCCA 10 113 1 TGGCTGAGTG 0.97934 -188 CGAAATCCTCTGACCGGTGTGTTGTCGGTGG 12 185 0 TGCCGGTGTG 0.961972 -116 ATTTGACTGCTGAGCTGTGTGAAGGCTACCG 14 105 1 TGGCTGTGTG 0.990906 -196 ** ******** Masking position 10 Map Score: 6.62775 Number of sites scoring better than the average of aligned sites = 336 Number in coding regions = 302 Number in noncoding regions = 34 Number of orfs with sites within 600 bp upstream = 44 Fraction of orfs with sites within 600 bp upstream = 0.00706714 Motif number 11 ACAAACCGCACCGGCCTGAGCATCAAGGAGT 4 236 0 CCGGCTGAGC 0.555722 -46 TGATGGGTAGCATGCCTGGGCCCTGCTTTCG 6 43 0 CATGCTGGGC 0.99145 -105 GCGGCGAGCGCATCCTTGGGCCGCATACTTG 6 123 1 CATCCTGGGC 0.981437 -25 TGCGGGGCCTGATGGCTGGGCTGGCGAAGTG 7 257 0 GATGGTGGGC 0.86705 -44 GGGCCGATTCTATCCGTGGGCGAACGGTTAT 9 51 0 TATCCTGGGC 0.806425 -21 AGGCGTAACCCATGCTCGAGCAAACATGCAT 10 93 1 CATGCCGAGC 0.966718 -208 CTCGAGCAAACATGCATGGGCTGAGTGGACG 10 107 1 CATGCTGGGC 0.99145 -194 TACCATCGCGCATGCAGCGGCTCAGTGGCCT 10 163 0 CATGCGCGGC 0.735368 -138 CGCGCTGCTCGACCCACGGGCCGGCCCACCG 12 160 1 GACCCCGGGC 0.886934 -141 TGTCAGTCTTGATCCGCGAGCGTGACGGCAC 14 68 0 GATCCCGAGC 0.805182 -233 CGCGTTGGTGCTCGCTTGGGCTAGTCAGGCA 14 198 0 CTCGCTGGGC 0.823169 -103 CCGGGAGGGACAATCTCGGGCGGCTAGGGCT 15 119 1 CAATCCGGGC 0.640102 -182 CTGGTAGCACCCTGGCCGGGCGATGATCTGC 15 231 1 CCTGGCGGGC 0.900833 -70 GTTCCAGTCCCATGCCCGGGTACCGGACGGT 16 135 0 CATGCCGGGT 0.907001 -50 ***** ***** Masking position 10 Map Score: 11.5938 Number of sites scoring better than the average of aligned sites = 2388 Number in coding regions = 2164 Number in noncoding regions = 224 Number of orfs with sites within 600 bp upstream = 214 Fraction of orfs with sites within 600 bp upstream = 0.034372 Motif number 12 ATTCGAGGTGAACTGGACTCCTTGATGCTC 4 220 1 AACTGGACTC 0.850696 -62 TCACAGCATCAACCGGCGTCAGCGTGCGAA 7 113 1 AACCGGCGTC 0.975913 -188 CTCGGCACCGACACGGAGTCTGCCAGCACC 7 226 1 ACACGGAGTC 0.854896 -75 CCTCGCCTTGATCTGGAGTCAGAACGCGTC 10 49 1 ATCTGGAGTC 0.864382 -252 CAGACACAGCAACTGGCGTCCAGGCCACTG 10 142 1 AACTGGCGTC 0.962318 -159 CGGCCGTCGAACCCGGCGTTACCCACGACA 12 37 1 ACCCGGCGTT 0.970336 -264 AGATTGTCCCTCCCGGCGTTCGTGGCCACG 15 105 0 TCCCGGCGTT 0.854271 -196 GAGCGGTAACCTGGACTTTCCAGCTGCG 17 9 1 ACCTGGACTT 0.821427 -58 ********** Masking position 9 Map Score: 2.38529 Number of sites scoring better than the average of aligned sites = 1209 Number in coding regions = 1084 Number in noncoding regions = 125 Number of orfs with sites within 600 bp upstream = 127 Fraction of orfs with sites within 600 bp upstream = 0.0203983 Motif number 13 ********** No masking Map Score: -1.21194e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: -1.21194e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -1.21194e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0