AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00860_mtub_reg_300.orf -o00860_mtub_300.ace -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: thrB 217 thrB Input sequences: #1 mmpS2 173 mmpS2 #2 hemA 49 hemA #3 cysG 32 cysG #4 hemB 85 hemB #5 hemL 113 hemL #6 argS 300 argS #7 rho 256 rho #8 rpmE 150 rpmE #9 prfA 89 prfA #10 proA 300 proA #11 hemE 52 hemE #12 cysG2 276 cysG2 #13 Rv2851c 58 hypothetical protein Rv2851c #14 Rv2852c 206 hypothetical protein Rv2852c #15 Rv2993c 275 hypothetical protein Rv2993c Motif number 1 ********** No masking Map Score: -5.07084e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 2 ACCCAGCTTTGCGCGTACCGGT 1 3 0 GCGCGTACCG 0.770388 -171 TCGTAGCCGCGAGCGTACGCAAAAT 4 71 0 GCCGCGAGCG 0.942155 -15 TTTGCTTGATGCCGCGGCCGGTCCACGAGT 5 23 0 GCCGCGGCCG 0.990628 -91 CAAACCTCTGGTGGCTGCGGCAAACTCTTA 5 49 1 GTGGCTGCGG 0.897032 -65 AGCCAACTATGCGGCCGCCCTCGCGGGTGG 6 48 1 GCGGCCGCCC 0.54041 -253 CAATGTGATCGGCGCCACCCGCGAGGGCGG 6 62 0 GGCGCCACCC 0.923446 -239 TCACATTGTTGTAGCCATGCGTGAGGCTAG 6 84 1 GTAGCCATGC 0.629491 -217 ATCAACCCTTGTGCCCCCGGCAGGATTCGA 6 114 1 GTGCCCCCGG 0.966103 -187 ACGTGTCGTCGTGCGCCCCCGTAGCTCAGG 6 182 0 GTGCGCCCCC 0.906342 -119 CGCTACTCTGGCGGGGCCCCATGGCGCAAC 6 210 0 GCGGGGCCCC 0.510967 -91 TCAGTGGGTAGCCGCGATGCGCTACTCTGG 6 229 0 GCCGCGATGC 0.936255 -72 GGCTATCCTCGGAGCCGTCCAGCAATCGCA 7 54 1 GGAGCCGTCC 0.459287 -203 AGAAGAATTGGTGGCTGTCCTAGCGGCAAG 7 103 0 GTGGCTGTCC 0.798128 -154 CGCCGGGAATGTCCGCACGCATCTCGGTGT 8 26 1 GTCCGCACGC 0.794846 -125 TTCTCGGCACGCCACGACGGGCGGCCACCG 8 116 1 GCCACGACGG 0.806213 -35 GCCACGACGGGCGGCCACCGATCACAGAGG 8 126 1 GCGGCCACCG 0.992097 -25 CGCCCGTCCTGTACCGCTGGTGCACAGTTC 9 28 0 GTACCGCTGG 0.720785 -62 CTTCCCGCGAGCGCGGACCCTAACGCGAAC 9 61 0 GCGCGGACCC 0.910389 -29 ACCGGCGGGCTGGGGGTGACACT 10 4 1 GGCGGGCTGG 0.693909 -297 TCCGCAGACCGCGGCCGCCGTCGAGACCAC 10 37 1 GCGGCCGCCG 0.978339 -264 AAACCGATTCGTCGCGCCGGGCAGGGGCGA 10 96 0 GTCGCGCCGG 0.987164 -205 AGGACTTCTCGCGGCCGCCGAAAGAGCTAA 10 131 0 GCGGCCGCCG 0.978339 -170 AAGCTGATCAGGGGCGACCGTCAAGTACGC 10 187 1 GGGGCGACCG 0.975238 -114 TGATCGCATAGCAACCACCCAGCCGGATCG 10 218 1 GCAACCACCC 0.517996 -83 CCGGATCGCTGCGCGGCCCGTCCGGAGCGG 10 240 1 GCGCGGCCCG 0.942048 -61 TCGATGTTACGCAGGTGCGGGGTGGCGGTC 11 15 1 GCAGGTGCGG 0.498882 -38 CAGGTGCGGGGTGGCGGTCGTGGCAGCATT 11 26 1 GTGGCGGTCG 0.979726 -27 ACTGCGAAAAGCCGGGCCGGAAATTCGCAG 12 15 1 GCCGGGCCGG 0.949474 -262 GGCCAAAGGGGTGGCGACCCGCGGCGCCCG 12 60 1 GTGGCGACCC 0.990318 -217 GTGGCGACCCGCGGCGCCCGGTCCCCGCGC 12 70 1 GCGGCGCCCG 0.912152 -207 GCGGCGCCCGGTCCCCGCGCTTGCGATCGC 12 80 1 GTCCCCGCGC 0.916995 -197 ATCAGGGCCAGTGGCGATCGCAAGCGCGGG 12 93 0 GTGGCGATCG 0.97209 -184 GGCCCTGATGGTGGCGACCCGCGGCGCCCG 12 114 1 GTGGCGACCC 0.990318 -163 GTGGCGACCCGCGGCGCCCGGTCCCCGCGC 12 124 1 GCGGCGCCCG 0.912152 -153 GCGGCGCCCGGTCCCCGCGCTTGCGATCGC 12 134 1 GTCCCCGCGC 0.916995 -143 ATCAGGGCCAGTGGCGATCGCAAGCGCGGG 12 147 0 GTGGCGATCG 0.97209 -130 GGCCCTGATGGTGGCGACCCGCGGCGCCCG 12 168 1 GTGGCGACCC 0.990318 -109 GTGGCGACCCGCGGCGCCCGGTCCCCGCGC 12 178 1 GCGGCGCCCG 0.912152 -99 GCGGCGCCCGGTCCCCGCGCTTGCGATCGC 12 188 1 GTCCCCGCGC 0.916995 -89 ATCAGGGCCAGTGGCGATCGCAAGCGCGGG 12 201 0 GTGGCGATCG 0.97209 -76 GGCCCTGATGGTGGCGACCCGCGGCGCCCG 12 222 1 GTGGCGACCC 0.990318 -55 GTGGCGACCCGCGGCGCCCGGTCCCCGCGC 12 232 1 GCGGCGCCCG 0.912152 -45 GCGGCGCCCGGTCCCCGCGCTTGCGATCGC 12 242 1 GTCCCCGCGC 0.916995 -35 GCCAAGCCTAGTGGCGATCGCAAGCGCGGG 12 255 0 GTGGCGATCG 0.97209 -22 CTGTATCGTCGCCGGCGCGGG 13 2 0 GCCGGCGCGG 0.953046 -57 TACAGTGGGGGTACCGCCCGCTTGCGGGGG 13 27 1 GTACCGCCCG 0.948688 -32 AAGCGCCGCTCTCCCCCGCAAGCG 13 45 0 GCCGCTCTCC 0.848872 -14 GGATTCTATGGCGGCCAGGGACGCACATTG 14 50 1 GCGGCCAGGG 0.875285 -157 GTAACCCTGTGCAGCGCGGGGCAGCCAACC 14 103 0 GCAGCGCGGG 0.730002 -104 ACACGATGACGTCCGCCTCCTGGGCCAGTA 14 130 0 GTCCGCCTCC 0.766612 -77 TTCCTTGGCTGCGCCGCTCCCAGGTTATCC 14 172 0 GCGCCGCTCC 0.537718 -35 CTCACCATCGGGCCCCGTGCCGGGTGACTG 15 26 0 GGCCCCGTGC 0.411519 -250 GGGCCCGATGGTGAGGGCCCGCAGCGCCCG 15 41 1 GTGAGGGCCC 0.750352 -235 GTGAGGGCCCGCAGCGCCCGGCAGGGTCTG 15 51 1 GCAGCGCCCG 0.960744 -225 GGGTCTGATTGCCGGGCTCCTCATCGGGCC 15 74 1 GCCGGGCTCC 0.761318 -202 TCATCGGGCCGTGCCGGCCCGAATCGTCGC 15 94 1 GTGCCGGCCC 0.897673 -182 GGCCCGAATCGTCGCCCGGCAGGGTCTGAT 15 109 1 GTCGCCCGGC 0.777561 -167 GGGTCTGATTGCCGGGCTCCTCATCGGGCC 15 130 1 GCCGGGCTCC 0.761318 -146 TCATCGGGCCGTGCCGGCCCGAATCGTCGC 15 150 1 GTGCCGGCCC 0.897673 -126 TCGTCGCCCGGCAGGGCCCGGCTAAGCTCA 15 173 1 GCAGGGCCCG 0.948251 -103 CGAATCGCCAGCCCGGACGGTGTCGCTTTT 15 220 1 GCCCGGACGG 0.930262 -56 ********** Masking position 1 Map Score: 144.952 Number of sites scoring better than the average of aligned sites = 65281 Number in coding regions = 61232 Number in noncoding regions = 4049 Number of orfs with sites within 600 bp upstream = 1323 Fraction of orfs with sites within 600 bp upstream = 0.212496 Motif number 3 CCGATTACTACGCACGTTAGGACATTTCAG 1 99 1 CGCACGTTAG 0.356762 -75 CTCGTGTTCCGCCCATCGCGCGGACCTAGT 1 153 0 GCCCATCGCG 0.899697 -21 GTACGCAAAATGCCAGCTCGGTCGGCGTGT 4 52 0 TGCCAGCTCG 0.726124 -34 TCGTAGCCGCGAGCGTACGCAAAAT 4 71 0 GCCGCGAGCG 0.674521 -15 TTTGCTTGATGCCGCGGCCGGTCCACGAGT 5 23 0 GCCGCGGCCG 0.97472 -91 GTTCCAGCCTGCCCAGGTCGCTCAACTACA 5 84 0 GCCCAGGTCG 0.956492 -30 CGGCGCCACCCGCGAGGGCGGCCGCATAGT 6 53 0 CGCGAGGGCG 0.504809 -248 AACCCTTGTGCCCCCGGCAGGATTCGAACC 6 117 1 CCCCCGGCAG 0.966729 -184 AGCAGAAGGCCGCAGGTTCGAATCCTGCCG 6 131 0 CGCAGGTTCG 0.806874 -170 TCTGGCGGGGCCCCATGGCGCAACGTGTCG 6 204 0 CCCCATGGCG 0.862101 -97 GCTTGCTTCCGGCCAGGAAGCGGGCTATCC 7 32 1 GGCCAGGAAG 0.396779 -225 CTGTCCTAGCGGCAAGGCAGTACGTATGCA 7 89 0 GGCAAGGCAG 0.847391 -168 CAGCCAAATCGCCGAGTGCGCCAATCATCG 7 185 0 GCCGAGTGCG 0.851015 -72 GTGCGGACATTCCCGGCGAGCCGTCTCGCC 8 14 0 TCCCGGCGAG 0.714497 -137 GGTGGCCGCCCGTCGTGGCGTGCCGAGAAC 8 115 0 CGTCGTGGCG 0.459785 -36 CTGGCTTACCGACGCCCGAACTGTGCAC 9 9 1 CCGACGCCCG 0.778235 -81 CGCGAACCGACGCCCGTCCTGTACCGCTGG 9 38 0 CGCCCGTCCT 0.354693 -52 ACCTTCTTCCCGCGAGCGCGGACCCTAACG 9 66 0 CGCGAGCGCG 0.520595 -24 TCAGTGTCACCCCCAGCCCGCCGGT 10 6 0 CCCCAGCCCG 0.982228 -295 AGACCGCGGCCGCCGTCGAGACCACGCGAA 10 42 1 CGCCGTCGAG 0.830578 -259 GTCGAGACCACGCGAAGCCGGCTGGAACTC 10 56 1 CGCGAAGCCG 0.569285 -245 CGTCGCCCCTGCCCGGCGCGACGAATCGGT 10 94 1 GCCCGGCGCG 0.990478 -207 GGTAGGACTTCTCGCGGCCGCCGAAAGAGC 10 134 0 CTCGCGGCCG 0.427787 -167 ATCGCTGCGCGGCCCGTCCGGAGCGGGTCG 10 244 1 GGCCCGTCCG 0.941286 -57 ACCTGGCCAGCGCAAGCCCGTTACCCTGGG 10 278 1 CGCAAGCCCG 0.801017 -23 GTCGATGTTACGCAGGTGCGGGGTGGCGGT 11 14 1 CGCAGGTGCG 0.894593 -39 ACTCAATGCTGCCACGACCGCCACCCCGCA 11 30 0 GCCACGACCG 0.634238 -23 CCCGGCTTTTCGCAGTGCCG 12 1 0 CGCAGTGCCG 0.917574 -276 CACTGCGAAAAGCCGGGCCGGAAATTCGCA 12 14 1 AGCCGGGCCG 0.885092 -263 GCCGGAAATTCGCAGTGGCGTTACATTCGC 12 30 1 CGCAGTGGCG 0.826613 -247 GGACCGGGCGCCGCGGGTCGCCACCCCTTT 12 64 0 CCGCGGGTCG 0.858273 -213 GCAAGCGCGGGGACCGGGCGCCGCGGGTCG 12 74 0 GGACCGGGCG 0.778476 -203 CAGTGGCGATCGCAAGCGCGGGGACCGGGC 12 85 0 CGCAAGCGCG 0.570009 -192 CACCATCAGGGCCAGTGGCGATCGCAAGCG 12 97 0 GCCAGTGGCG 0.884583 -180 GGACCGGGCGCCGCGGGTCGCCACCATCAG 12 118 0 CCGCGGGTCG 0.858273 -159 GCAAGCGCGGGGACCGGGCGCCGCGGGTCG 12 128 0 GGACCGGGCG 0.778476 -149 CAGTGGCGATCGCAAGCGCGGGGACCGGGC 12 139 0 CGCAAGCGCG 0.570009 -138 CACCATCAGGGCCAGTGGCGATCGCAAGCG 12 151 0 GCCAGTGGCG 0.884583 -126 GGACCGGGCGCCGCGGGTCGCCACCATCAG 12 172 0 CCGCGGGTCG 0.858273 -105 GCAAGCGCGGGGACCGGGCGCCGCGGGTCG 12 182 0 GGACCGGGCG 0.778476 -95 CAGTGGCGATCGCAAGCGCGGGGACCGGGC 12 193 0 CGCAAGCGCG 0.570009 -84 CACCATCAGGGCCAGTGGCGATCGCAAGCG 12 205 0 GCCAGTGGCG 0.884583 -72 GGACCGGGCGCCGCGGGTCGCCACCATCAG 12 226 0 CCGCGGGTCG 0.858273 -51 GCAAGCGCGGGGACCGGGCGCCGCGGGTCG 12 236 0 GGACCGGGCG 0.778476 -41 TAGTGGCGATCGCAAGCGCGGGGACCGGGC 12 247 0 CGCAAGCGCG 0.570009 -30 ACTGTATCGTCGCCGGCGCGGG 13 3 0 CGCCGGCGCG 0.777351 -56 GGGGGTACCGCCCGCTTGCGGGGGAGAGCG 13 33 1 CCCGCTTGCG 0.586209 -26 CGCACTATCCGCCCAGTCCGGTTCTTCTTG 14 21 0 GCCCAGTCCG 0.94237 -186 ACAATGTGCGTCCCTGGCCGCCATAGAATC 14 51 0 TCCCTGGCCG 0.469697 -156 CCCTGTGCAGCGCGGGGCAGCCAACCCAAG 14 99 0 CGCGGGGCAG 0.936147 -108 CAGGGTTACTGGCCCAGGAGGCGGACGTCA 14 124 1 GGCCCAGGAG 0.493563 -83 CACCATCGGGCCCCGTGCCGGGTGACTGTG 15 24 0 CCCCGTGCCG 0.971881 -252 GGGCCCGCAGCGCCCGGCAGGGTCTGATTG 15 55 1 CGCCCGGCAG 0.680174 -221 CATCGGGCCGTGCCGGCCCGAATCGTCGCC 15 95 1 TGCCGGCCCG 0.948605 -181 CCCGAATCGTCGCCCGGCAGGGTCTGATTG 15 111 1 CGCCCGGCAG 0.680174 -165 CATCGGGCCGTGCCGGCCCGAATCGTCGCC 15 151 1 TGCCGGCCCG 0.948605 -125 CCCGAATCGTCGCCCGGCAGGGCCCGGCTA 15 167 1 CGCCCGGCAG 0.680174 -109 TCGGTCGAATCGCCAGCCCGGACGGTGTCG 15 215 1 CGCCAGCCCG 0.622263 -61 CACTCGGCTCGCCCAGCTCGCCGTCGATGC 15 254 0 GCCCAGCTCG 0.927687 -22 AGCTGGGCGAGCCGAGTGAG 15 266 1 GCCGAGTGAG 0.472275 -10 ********** Masking position 10 Map Score: 106.633 Number of sites scoring better than the average of aligned sites = 50179 Number in coding regions = 46609 Number in noncoding regions = 3570 Number of orfs with sites within 600 bp upstream = 1368 Fraction of orfs with sites within 600 bp upstream = 0.219724 Motif number 4 CCTCGTGTTCCGCCCATCGCGCGGACCTAG 1 154 0 CGCCCATCGC 0.926123 -20 CAGCACCACCTGGCCAGCTCCCTCGACTAC 2 28 0 TGGCCAGCTC 0.914732 -22 TCGTAGCCGCGAGCGTACGCAAAATG 4 70 0 CCGCGAGCGT 0.550499 -16 GTTTGCTTGATGCCGCGGCCGGTCCACGAG 5 24 0 TGCCGCGGCC 0.92283 -90 TGTTCCAGCCTGCCCAGGTCGCTCAACTAC 5 85 0 TGCCCAGGTC 0.818603 -29 TCGGCGCCACCCGCGAGGGCGGCCGCATAG 6 54 0 CCGCGAGGGC 0.930543 -247 GTTCGAATCCTGCCGGGGGCACAAGGGTTG 6 116 0 TGCCGGGGGC 0.96022 -185 GAGCAGAAGGCCGCAGGTTCGAATCCTGCC 6 132 0 CCGCAGGTTC 0.440857 -169 TGCGCTACTCTGGCGGGGCCCCATGGCGCA 6 212 0 TGGCGGGGCC 0.90857 -89 TCAGCCAAATCGCCGAGTGCGCCAATCATC 7 186 0 CGCCGAGTGC 0.958705 -71 CGGACATTCCCGGCGAGCCGTCTCGCCGGA 8 11 0 CGGCGAGCCG 0.688295 -140 ACCAGGTTCTCGGCACGCCACGACGGGCGG 8 110 1 CGGCACGCCA 0.693184 -41 AACCTTCTTCCCGCGAGCGCGGACCCTAAC 9 67 0 CCGCGAGCGC 0.973886 -23 ATCAGTGTCACCCCCAGCCCGCCGGT 10 7 0 CCCCCAGCCC 0.973298 -294 GTGGTCTCGACGGCGGCCGCGGTCTGCGGA 10 37 0 CGGCGGCCGC 0.938758 -264 TCGTCGCCCCTGCCCGGCGCGACGAATCGG 10 93 1 TGCCCGGCGC 0.980683 -208 TTAGCTCTTTCGGCGGCCGCGAGAAGTCCT 10 131 1 CGGCGGCCGC 0.938758 -170 GATCGCTGCGCGGCCCGTCCGGAGCGGGTC 10 243 1 CGGCCCGTCC 0.93842 -58 CCAGGTAAGACGACCCGCTCCGGACGGGCC 10 254 0 CGACCCGCTC 0.436538 -47 TCGTCTTACCTGGCCAGCGCAAGCCCGTTA 10 271 1 TGGCCAGCGC 0.980555 -30 GCTGCCACGACCGCCACCCCGCACCTGCGT 11 23 0 CCGCCACCCC 0.76041 -30 GCGCCGCGGGTCGCCACCCCTTTGGCCGCG 12 57 0 TCGCCACCCC 0.586794 -220 CGACCCGCGGCGCCCGGTCCCCGCGCTTGC 12 74 1 CGCCCGGTCC 0.963999 -203 CCAGTGGCGATCGCAAGCGCGGGGACCGGG 12 86 0 TCGCAAGCGC 0.868005 -191 CGCTTGCGATCGCCACTGGCCCTGATGGTG 12 97 1 CGCCACTGGC 0.610687 -180 CGACCCGCGGCGCCCGGTCCCCGCGCTTGC 12 128 1 CGCCCGGTCC 0.963999 -149 CCAGTGGCGATCGCAAGCGCGGGGACCGGG 12 140 0 TCGCAAGCGC 0.868005 -137 CGCTTGCGATCGCCACTGGCCCTGATGGTG 12 151 1 CGCCACTGGC 0.610687 -126 CGACCCGCGGCGCCCGGTCCCCGCGCTTGC 12 182 1 CGCCCGGTCC 0.963999 -95 CCAGTGGCGATCGCAAGCGCGGGGACCGGG 12 194 0 TCGCAAGCGC 0.868005 -83 CGCTTGCGATCGCCACTGGCCCTGATGGTG 12 205 1 CGCCACTGGC 0.610687 -72 CGACCCGCGGCGCCCGGTCCCCGCGCTTGC 12 236 1 CGCCCGGTCC 0.963999 -41 CTAGTGGCGATCGCAAGCGCGGGGACCGGG 12 248 0 TCGCAAGCGC 0.868005 -29 CCGCCAAGCCTAGTGGCGATC 12 266 0 CGCCAAGCCT 0.564742 -11 CACTGTATCGTCGCCGGCGCGGG 13 4 0 TCGCCGGCGC 0.936327 -55 AAGCGCCGCTCTCCCCCGCAAGC 13 46 0 CGCCGCTCTC 0.700729 -13 CCGCACTATCCGCCCAGTCCGGTTCTTCTT 14 22 0 CGCCCAGTCC 0.950924 -185 GATTCTATGGCGGCCAGGGACGCACATTGT 14 51 1 CGGCCAGGGA 0.750412 -156 TTGGGTTGGCTGCCCCGCGCTGCACAGGGT 14 100 1 TGCCCCGCGC 0.975345 -107 TCCTTGGCTGCGCCGCTCCCAGGTTATCCC 14 171 0 CGCCGCTCCC 0.898171 -36 TCGGGCCCCGTGCCGGGTGACTGTGCCAGC 15 19 0 TGCCGGGTGA 0.515431 -257 AATCAGACCCTGCCGGGCGCTGCGGGCCCT 15 54 0 TGCCGGGCGC 0.982504 -222 AGGGTCTGATTGCCGGGCTCCTCATCGGGC 15 73 1 TGCCGGGCTC 0.943275 -203 CGATTCGGGCCGGCACGGCCCGATGAGGAG 15 90 0 CGGCACGGCC 0.918482 -186 AATCAGACCCTGCCGGGCGACGATTCGGGC 15 110 0 TGCCGGGCGA 0.685271 -166 AGGGTCTGATTGCCGGGCTCCTCATCGGGC 15 129 1 TGCCGGGCTC 0.943275 -147 CGATTCGGGCCGGCACGGCCCGATGAGGAG 15 146 0 CGGCACGGCC 0.918482 -130 AGCCGGGCCCTGCCGGGCGACGATTCGGGC 15 166 0 TGCCGGGCGA 0.685271 -110 GGATGAGCTTAGCCGGGCCCTGCCGGGCGA 15 176 0 AGCCGGGCCC 0.78904 -100 ATCGGTCGAATCGCCAGCCCGGACGGTGTC 15 214 1 TCGCCAGCCC 0.932475 -62 TCACTCGGCTCGCCCAGCTCGCCGTCGATG 15 255 0 CGCCCAGCTC 0.965649 -21 ********** Masking position 4 Map Score: 100.888 Number of sites scoring better than the average of aligned sites = 47120 Number in coding regions = 44108 Number in noncoding regions = 3012 Number of orfs with sites within 600 bp upstream = 1300 Fraction of orfs with sites within 600 bp upstream = 0.208802 Motif number 5 CAACAATGTGATCGGCGCCACCCGCGAGGG 6 65 0 ATCGGCGCCA 0.858211 -236 GTCGTGCGCCCCCGTAGCTCAGGGGATAGA 6 175 0 CCCGTAGCTC 0.738779 -126 CCGCAACGGATTCGAAGCCCAACCACCTCA 6 262 1 TTCGAAGCCC 0.805086 -39 ACCTGGCATAATCGATGCTCAACGAGTTGG 8 74 1 ATCGATGCTC 0.414871 -77 CTGGCTTACCGACGCCCGAACTGTGCA 9 8 1 ACCGACGCCC 0.991358 -82 CCTAACGCGAACCGACGCCCGTCCTGTACC 9 43 0 ACCGACGCCC 0.991358 -47 ACTCGCCCGATTCGTCGCCCCTGCCCGGCG 10 82 1 TTCGTCGCCC 0.978361 -219 ACCAAACCGATTCGTCGCGCCGGGCAGGGG 10 99 0 TTCGTCGCGC 0.768695 -202 GGCGTACTTGACGGTCGCCCCTGATCAGCT 10 188 0 ACGGTCGCCC 0.921536 -113 CCAGCGCAAGCCCGTTACCCTGGGGCA 10 284 1 CCCGTTACCC 0.650218 -17 TGCTGCCACGACCGCCACCCCGCACCTGCG 11 24 0 ACCGCCACCC 0.775517 -29 GGTGGCGACCCGCGGCGCCCGGTCCCCGCG 12 69 1 CGCGGCGCCC 0.992611 -208 GGTGGCGACCCGCGGCGCCCGGTCCCCGCG 12 123 1 CGCGGCGCCC 0.992611 -154 GGTGGCGACCCGCGGCGCCCGGTCCCCGCG 12 177 1 CGCGGCGCCC 0.992611 -100 GGTGGCGACCCGCGGCGCCCGGTCCCCGCG 12 231 1 CGCGGCGCCC 0.992611 -46 CCCCCACTGTATCGTCGCCGGCGCGGG 13 8 0 ATCGTCGCCG 0.897997 -51 AGACAATTACCCCGAAGCCCACAATGTGCG 14 71 0 CCCGAAGCCC 0.953843 -136 GCCGGCCCGAATCGTCGCCCGGCAGGGTCT 15 106 1 ATCGTCGCCC 0.992198 -170 GCCGGCCCGAATCGTCGCCCGGCAGGGCCC 15 162 1 ATCGTCGCCC 0.992198 -114 ********** Masking position 4 Map Score: 39.7207 Number of sites scoring better than the average of aligned sites = 3312 Number in coding regions = 3057 Number in noncoding regions = 255 Number of orfs with sites within 600 bp upstream = 234 Fraction of orfs with sites within 600 bp upstream = 0.0375843 Motif number 6 GGCAGCACCACCTGGCCAGCTCCCTCGACT 2 30 0 CCTGGCCAGC 0.739274 -20 CGCACGCTCACCTGACGAGGGTGGGCCA 4 9 0 CCTGACGAGG 0.934745 -77 AGTGTTCCAGCCTGCCCAGGTCGCTCAACT 5 87 0 CCTGCCCAGG 0.571909 -27 GGTTCTTACCCCGACGAATTTGAGAGCGA 6 10 1 CCCGACGAAT 0.371077 -291 CCCTTGTGCCCCCGGCAGGATTCGAACCTG 6 119 1 CCCGGCAGGA 0.825174 -182 GATGCGCTACTCTGGCGGGGCCCCATGGCG 6 214 0 TCTGGCGGGG 0.807888 -87 TTTGCTTGCTTCCGGCCAGGAAGCGGGCTA 7 29 1 TCCGGCCAGG 0.519915 -228 TCCGGCGAGACGGCTCGCCG 8 1 1 TCCGGCGAGA 0.847324 -150 TGCGGACATTCCCGGCGAGCCGTCTCGCCG 8 13 0 CCCGGCGAGC 0.981967 -138 CGAGTTGGAACCGGACCAGGTTCTCGGCAC 8 96 1 CCGGACCAGG 0.810308 -55 GGGCGACGAATCGGGCGAGTTCCAGCCGGC 10 72 0 TCGGGCGAGT 0.678256 -229 ATTCGTCGCGCCGGGCAGGGGCGACGAATC 10 90 0 CCGGGCAGGG 0.884952 -211 TGCCGATAATCCCGGCAAGACGCTGGTAGG 10 158 0 CCCGGCAAGA 0.905103 -143 CGCGCAGCGATCCGGCTGGGTGGTTGCTAT 10 225 0 TCCGGCTGGG 0.767638 -76 ACGACCCGCTCCGGACGGGCCGCGCAGCGA 10 245 0 CCGGACGGGC 0.931904 -56 GGTCGTCTTACCTGGCCAGCGCAAGCCCGT 10 269 1 CCTGGCCAGC 0.739274 -32 CTGCGAAAAGCCGGGCCGGAAATTCGCAGT 12 16 1 CCGGGCCGGA 0.552496 -261 CCAAGAAGAACCGGACTGGGCGGATAGTGC 14 20 1 CCGGACTGGG 0.899245 -187 CCCAGGTTATCCCGACGGGTGTTAACACGA 14 154 0 CCCGACGGGT 0.932798 -53 GGCACAGTCACCCGGCACGGGGCCCGATGG 15 22 1 CCCGGCACGG 0.678114 -254 GCCCGCAGCGCCCGGCAGGGTCTGATTGCC 15 57 1 CCCGGCAGGG 0.634985 -219 GCCGGCACGGCCCGATGAGGAGCCCGGCAA 15 82 0 CCCGATGAGG 0.814683 -194 CGAATCGTCGCCCGGCAGGGTCTGATTGCC 15 113 1 CCCGGCAGGG 0.634985 -163 GCCGGCACGGCCCGATGAGGAGCCCGGCAA 15 138 0 CCCGATGAGG 0.814683 -138 CGAATCGTCGCCCGGCAGGGCCCGGCTAAG 15 169 1 CCCGGCAGGG 0.634985 -107 CCCGGCAGGGCCCGGCTAAGCTCATCCAAA 15 179 1 CCCGGCTAAG 0.718623 -97 AATCGCCAGCCCGGACGGTGTCGCTTTTGC 15 222 1 CCGGACGGTG 0.637215 -54 ********** Masking position 4 Map Score: 58.9911 Number of sites scoring better than the average of aligned sites = 8369 Number in coding regions = 7677 Number in noncoding regions = 692 Number of orfs with sites within 600 bp upstream = 502 Fraction of orfs with sites within 600 bp upstream = 0.0806296 Motif number 7 GCCCATCGCGCGGACCTAGTGACCCTTAGGC 1 142 0 CGGACCTATG 0.668215 -32 GCAGTACGTATGCAGATGCTGCGATTGCTGG 7 72 0 TGCAGATGTG 0.832041 -185 TCGCCGTATTCGCCGCTGATGGCGATCACCG 7 145 1 CGCCGCTGTG 0.991098 -112 GCCCGTCCTGTACCGCTGGTGCACAGTTCGG 9 26 0 TACCGCTGTG 0.906246 -64 ACTTGACGGTCGCCCCTGATCAGCTTGCCGA 10 182 0 CGCCCCTGTC 0.942548 -119 CGATCGCCACTGGCCCTGATGGTGGCGACCC 12 103 1 TGGCCCTGTG 0.984904 -174 CGATCGCCACTGGCCCTGATGGTGGCGACCC 12 157 1 TGGCCCTGTG 0.984904 -120 CGATCGCCACTGGCCCTGATGGTGGCGACCC 12 211 1 TGGCCCTGTG 0.984904 -66 CGGCCAGGGACGCACATTGTGGGCTTCGGGG 14 61 1 CGCACATTTG 0.628562 -146 CCACCCATGCTGGCACAGTCAC 15 2 1 CACCCATGTG 0.873438 -274 GCCCGGACGGTGTCGCTTTTGCCAGCATCGA 15 230 1 TGTCGCTTTG 0.710282 -46 CCCAGCTCGCCGTCGATGCTGGCAAAAGCGA 15 242 0 CGTCGATGTG 0.891479 -34 ******** ** Masking position 7 Map Score: 10.3055 Number of sites scoring better than the average of aligned sites = 6703 Number in coding regions = 6344 Number in noncoding regions = 359 Number of orfs with sites within 600 bp upstream = 284 Fraction of orfs with sites within 600 bp upstream = 0.0456152 Motif number 8 GTAGTAATCGGATGTCTCGTTGCGTTAGCTAG 1 78 0 GTGTCTGTTG 0.502096 -96 GCAGCCACCAGAGGTTTGCTTGATGCCGCGGC 5 35 0 GGGTTTCTTG 0.862174 -79 AGTTGGCTTCGTGGTCTCGCTCTCAAATTCGT 6 24 0 GGGTCTGCTC 0.964759 -277 AGCCAACTATGCGGCCGCCCTCGCGGGTGGCG 6 48 1 GGGCCGCCTC 0.682224 -253 ATGGGCTGAGGTGGTTGGGCTTCGAATCCGTT 6 266 0 GGGTTGGCTT 0.909999 -35 CAAGGTTGCGGGGGTTTGCTTGCTTCCGGCCA 7 15 1 GGGTTTCTTG 0.862174 -242 GGCGCACTCGGCGATTTGGCTGACTGCAACAA 7 193 1 GGATTTGCTG 0.89683 -64 CACGTCATACGGGGTTTTGTTGCAGTCAGCCA 7 209 0 GGGTTTGTTG 0.947915 -48 TGGGGTGATAGCGGTTGACCTGGCATAATCGA 8 57 1 GGGTTGCCTG 0.972481 -94 GAATCGGTTTGGTGTTTAGCTCTTTCGGCGGC 10 116 1 GTGTTTGCTC 0.831665 -185 GGGCCGCGCAGCGATCCGGCTGGGTGGTTGCT 10 227 0 GGATCCGCTG 0.561828 -74 CCAGGGTAACGGGCTTGCGCTGGCCAGGTAAG 10 275 0 GGCTTGGCTG 0.983119 -26 CCCGGTCCCCGCGCTTGCGATCGCCACTGGCC 12 86 1 GGCTTGGATC 0.942814 -191 CCCGGTCCCCGCGCTTGCGATCGCCACTGGCC 12 140 1 GGCTTGGATC 0.942814 -137 CCCGGTCCCCGCGCTTGCGATCGCCACTGGCC 12 194 1 GGCTTGGATC 0.942814 -83 CCCGGTCCCCGCGCTTGCGATCGCCACTAGGC 12 248 1 GGCTTGGATC 0.942814 -29 * ***** **** Masking position 11 Map Score: 13.1019 Number of sites scoring better than the average of aligned sites = 4135 Number in coding regions = 3852 Number in noncoding regions = 283 Number of orfs with sites within 600 bp upstream = 221 Fraction of orfs with sites within 600 bp upstream = 0.0354963 Motif number 9 ACCGGTACGCGCAAAGCTGG 1 1 1 ACCGGTACGC 0.9832 -173 TTCAGGAGGTATCGGGAGGCCTAAGGGTCA 1 124 1 ATCGGGAGGC 0.813071 -50 GTGTCGGTGTACAGACACGCACGCTCACCT 4 26 0 ACAGACACGC 0.895085 -60 GTGTCTGTACACCGACACGCCGACCGAGCT 4 38 1 ACCGACACGC 0.988439 -48 CCCCTGAGCTACGGGGGCGCACGACGACAC 6 180 1 ACGGGGGCGC 0.786656 -121 CACCCCAAACACCGAGATGCGTGCGGACAT 8 34 0 ACCGAGATGC 0.698415 -117 GGACCAGGTTCTCGGCACGCCACGACGGGC 8 108 1 CTCGGCACGC 0.964407 -43 CAGTTCGGGCGTCGGTAAGCCAG 9 4 0 GTCGGTAAGC 0.385201 -86 CCTAACGCGAACCGACGCCCGTCCTGTACC 9 43 0 ACCGACGCCC 0.817646 -47 ACCGGCGGGCTGGGGGTGAC 10 1 1 ACCGGCGGGC 0.950448 -300 TGCCGGGATTATCGGCAAGCTGATCAGGGG 10 171 1 ATCGGCAAGC 0.872428 -130 TGCTGCCACGACCGCCACCCCGCACCTGCG 11 24 0 ACCGCCACCC 0.818435 -29 TCTATGGCGGCCAGGGACGCACATTGTGGG 14 54 1 CCAGGGACGC 0.84734 -153 GGCACAGTCACCCGGCACGGGGCCCGATGG 15 22 1 CCCGGCACGG 0.968062 -254 GACGATTCGGGCCGGCACGGCCCGATGAGG 15 92 0 GCCGGCACGG 0.967696 -184 GACGATTCGGGCCGGCACGGCCCGATGAGG 15 148 0 GCCGGCACGG 0.967696 -128 TGGCGATTCGACCGATACGCATTTGGATGA 15 200 0 ACCGATACGC 0.944517 -76 ********** Masking position 4 Map Score: 20.426 Number of sites scoring better than the average of aligned sites = 8752 Number in coding regions = 8059 Number in noncoding regions = 693 Number of orfs with sites within 600 bp upstream = 564 Fraction of orfs with sites within 600 bp upstream = 0.0905879 Motif number 10 CGTTAGGACATTTCAGGAGGTATCGGGAGGC 1 113 1 TTTCAGGGGT 0.7239 -61 CAAAATGCCAGCTCGGTCGGCGTGTCGGTGT 4 46 0 GCTCGGTGGC 0.884681 -40 GCGGCCGCCCTCGCGGGTGGCGCCGATCACA 6 58 1 TCGCGGGGGC 0.919695 -243 GCGGCCTTCTGCTCCGGAGGCAGACGCTCTA 6 148 1 GCTCCGGGGC 0.988666 -153 CGCCCCCGTAGCTCAGGGGATAGAGCGTCTG 6 168 0 GCTCAGGGAT 0.908249 -133 GATGCGCTACTCTGGCGGGGCCCCATGGCGC 6 213 0 TCTGGCGGGC 0.675492 -88 CTTCGAATCCGTTGCGGTGGTCAGTGGGTAG 6 248 0 GTTGCGGGGT 0.922657 -53 CATCCTATGGGCTGAGGTGGTTGGGCTTCGA 6 273 0 GCTGAGGGGT 0.95429 -28 TCCGCAAGGTTGCGGGGGTTTGCTTGCTT 7 9 1 GTTGCGGGGT 0.922588 -248 TTGCTGGACGGCTCCGAGGATAGCCCGCTTC 7 48 0 GCTCCGAGAT 0.523922 -209 CATCTCGGTGTTTGGGGTGATAGCGGTTGAC 8 45 1 TTTGGGGGAT 0.60555 -106 CTGGTGCACAGTTCGGGCGTCGGTAAGCCAG 9 11 0 GTTCGGGGTC 0.75662 -79 GTCGCGCCGGGCAGGGGCGACGAATCGGGCG 10 85 0 GCAGGGGGAC 0.756404 -216 CCCGCGCCGGCGACGATACAGTGG 13 4 1 GCGCCGGGAC 0.898284 -55 GTCCGGTTCTTCTTGGGAGGTAACG 14 5 0 TCTTGGGGGT 0.681903 -202 AGGGTTACTGGCCCAGGAGGCGGACGTCATC 14 125 1 GCCCAGGGGC 0.881908 -82 ******* *** Masking position 9 Map Score: 10.815 Number of sites scoring better than the average of aligned sites = 12457 Number in coding regions = 11686 Number in noncoding regions = 771 Number of orfs with sites within 600 bp upstream = 561 Fraction of orfs with sites within 600 bp upstream = 0.090106 Motif number 11 ********** No masking Map Score: -5.07084e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ********** No masking Map Score: -5.07084e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: -5.07084e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0