AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00910_mtub_reg_100.orf -o00910_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 Rv0196 112 hypothetical protein Rv0196 #2 nirB 213 nirB #3 narG 300 narG #4 narH 38 narH #5 narJ 56 narJ #6 ansA 51 ansA #7 bfrA 300 bfrA #8 Rv1877 84 hypothetical protein Rv1877 #9 glnA3 54 glnA3 #10 asnB 245 asnB #11 glnA1 300 glnA1 #12 glnA2 94 glnA2 #13 Rv2223c 61 hypothetical protein Rv2223c #14 Rv2224c 300 hypothetical protein Rv2224c #15 nirA 300 nirA #16 glnA4 159 glnA4 #17 metC 282 metC #18 gltB 300 gltB Motif number 1 ********** No masking Map Score: 1.3033e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 2 ACGTACGTCGGACGCCGGCCATCAA 1 6 0 GACGCCGGCC 0.492946 -107 CGACGTACGTGCGGCCGGGCCGATCCCAAG 1 26 1 GCGGCCGGGC 0.925622 -87 CGCCGCTCCATCCGAGGCATAT 1 101 0 CCGCTCCATC 0.723008 -12 GGGCCGGCAACGCGCCGGACACAGCTAACT 2 36 0 CGCGCCGGAC 0.833329 -178 TCTTGGTATAGCGGGCCGGCAACGCGCCGG 2 48 0 GCGGGCCGGC 0.728881 -166 CTGTCACACAGCCGGTCGCCAGGTGTGATC 2 130 1 GCCGGTCGCC 0.730168 -84 GGTTGACGGTGGCCGCCGTCAACTTGGTTA 3 18 1 GGCCGCCGTC 0.50976 -283 CTCGATGGATGGGCGTCAGCGTCCTGCCCG 3 129 0 GGGCGTCAGC 0.911709 -172 GGGTCCCCGACCCGGCGGACCGGGGCTTGA 3 179 1 CCCGGCGGAC 0.871834 -122 CGCAATGCGGCGCGGCCGGCCAGCCCGTAA 3 213 1 CGCGGCCGGC 0.807538 -88 GAGTGCGGTCGCGCGCCGACGGCCCGGCCC 3 251 1 GCGCGCCGAC 0.922649 -50 TGAGCGGTGTGGGGCCGGGCCGTCGGCGCG 3 262 0 GGGGCCGGGC 0.928616 -39 CCAATGAAGGGCCCGAGCGACGCTTGCG 4 9 1 GGGCCCGAGC 0.909921 -30 TCTCGTGTCCGAGAGCGGTCGAGCGCCACC 5 19 1 GAGAGCGGTC 0.605217 -38 GAGAGCGGTCGAGCGCCACCACAATGAGGG 5 29 1 GAGCGCCACC 0.927958 -28 CCATCATCATCCCCTAGGGCCGATATGGCC 6 12 1 CCCCTAGGGC 0.46565 -40 GCCGCGGGGTCTGGGCGGGCCATATCGGCC 6 29 0 CTGGGCGGGC 0.969684 -23 CCCGCCCAGACCCCGCGGCCGG 6 40 1 CCCCGCGGCC 0.839631 -12 CCAGCAGATGCTGCGTCGGCGAACGATCAA 7 24 1 CTGCGTCGGC 0.922127 -277 ACCTAACAATGACCCGCGGCTTGGACTTTG 7 99 1 GACCCGCGGC 0.38158 -202 GGGTTTGTTGCGGCGTCGGCGCGTCTCGCC 7 133 0 CGGCGTCGGC 0.977101 -168 GCAACAAACCCTGCGCCGACCCGTACTCGC 7 152 1 CTGCGCCGAC 0.938994 -149 CCCAAGACGAGCCCGACACCGGTGCGCTCC 7 224 1 GCCCGACACC 0.703082 -77 CGACACCGGTGCGCTCCAGCCCTGCCCACC 7 237 1 GCGCTCCAGC 0.900369 -64 CCCACCTGGCGCGGTTCGCCACGACAGCCT 7 261 1 GCGGTTCGCC 0.741148 -40 TAGAGCTTGTCAGCGGCGCCCGGAGTGGTA 8 33 0 CAGCGGCGCC 0.788163 -52 CGCGGCTACGCGCGGCAAGCATCG 9 5 0 CGCGGCAAGC 0.566014 -50 CCGCGCGTAGCCGCGCGAGCTGATCCGCGC 9 20 1 CCGCGCGAGC 0.982229 -35 GTATCACAAGCTGGGCCGACTGGGATAGCA 10 25 1 CTGGGCCGAC 0.922734 -221 CGATGGTTCTCGCCGCAGCCGGTGCTATCC 10 47 0 CGCCGCAGCC 0.814114 -199 CCCGCGCGGGCGGCGTGGTCTACGCTGCGT 10 99 0 CGGCGTGGTC 0.848203 -147 ACCACGCCGCCCGCGCGGGCGACGATGCGG 10 110 1 CCGCGCGGGC 0.993818 -136 GGCGCGGCTCCTCAGCGGGCCGTTTCGGCC 10 139 0 CTCAGCGGGC 0.869269 -107 CGCTGAGGAGCCGCGCCATCAGCCCCGCGG 10 152 1 CCGCGCCATC 0.960058 -94 GCGCCATCAGCCCCGCGGGCGACTGCCTGG 10 164 1 CCCCGCGGGC 0.816163 -82 CCTGGTCGTCGCGACCCGCCGGACGAGGCA 10 189 1 GCGACCCGCC 0.924769 -57 GTGGGGCATACTGGGGCGCC 10 236 1 CTGGGGCGCC 0.758602 -10 CAGAGCCGCCAGCCGGCGCC 11 1 1 CAGAGCCGCC 0.915615 -300 GGCTCCGATGGGGCGCCGGCTGGCGGCTCT 11 12 0 GGGCGCCGGC 0.832873 -289 GGCGCCCCATCGGAGCCAGCGAACCCGGTC 11 25 1 CGGAGCCAGC 0.942068 -276 CGCTGGGCTTGCCGGACACCGGACCGGGTT 11 46 0 GCCGGACACC 0.634671 -255 ATCCCGGCAAGACGCTGGGCTTGCCGGACA 11 58 0 GACGCTGGGC 0.45118 -243 CGGCGAAATCGCCGCCCGACTATCCCGGCA 11 79 0 GCCGCCCGAC 0.540998 -222 GCGGCGATTTCGCCGTCATCGGGCAGACCC 11 94 1 CGCCGTCATC 0.701365 -207 TAACCAGGTTCCCGTTCGGCATGCCACCGG 11 126 1 CCCGTTCGGC 0.780836 -175 GACGCCGGGTCTCCCCGGCCCTATTGTGGG 11 178 0 CTCCCCGGCC 0.87231 -123 TACTGACCGTGCCGCCCACCACTGACGCCG 11 201 0 GCCGCCCACC 0.874795 -100 TTACTGTATCCGCGGCCGACGCTATGGAGC 11 270 0 CGCGGCCGAC 0.914542 -31 CACTCCCCTTGCGGGCCGCCCCGCAACGCT 12 21 1 GCGGGCCGCC 0.756322 -74 CGCAACGCTTCTGGCCGGGCATCGGTAACA 12 42 1 CTGGCCGGGC 0.899982 -53 GATCCCCGATGCCGTCCACCCCTTCGACGA 14 18 0 GCCGTCCACC 0.780572 -283 ATCGGGGATCGCCCTCGGGCGATGGCCAAG 14 38 1 GCCCTCGGGC 0.512252 -263 TGCACCATGCCGGCGTGGACGGGGTGCCAG 14 69 1 CGGCGTGGAC 0.82603 -232 GACGGGGTGCCAGCGCCAACCTGATGTCGC 14 86 1 CAGCGCCAAC 0.805489 -215 TCCGGCACGGGCGCGTCGGCCTCGGCGGTG 14 123 0 GCGCGTCGGC 0.976946 -178 ACCCGTCGACCGGATCCGGCACGGGCGCGT 14 137 0 CGGATCCGGC 0.857825 -164 GGGCAAGACACCGACCCGTCGACCGGATCC 14 150 0 CCGACCCGTC 0.822632 -151 TGGCGAACTCGTCGGCCATCCCCCATACGT 14 194 0 GTCGGCCATC 0.703926 -107 CAGGACTGCTGGCAGCGGCCGGTTAGTCGG 14 234 1 GGCAGCGGCC 0.710298 -67 CGGCCGGTTAGTCGGCCGACGGTGGCCGCT 14 249 1 GTCGGCCGAC 0.493525 -52 CGAGATCCTGGCCAGCGGCCACCGTCGGCC 14 262 0 GCCAGCGGCC 0.687947 -39 CCGGGTCGGCCTATCCATCC 15 1 1 CCGGGTCGGC 0.976546 -300 TGGCGTGCAGCTGCGCGACCTGGTCAAATT 15 70 0 CTGCGCGACC 0.903337 -231 ATGTCACCGTGACCGCCGCCAAGAACCCGC 15 111 1 GACCGCCGCC 0.505611 -190 CAAGAACCCGCGCCCCGATCTGCGAATCGC 15 130 1 CGCCCCGATC 0.696976 -171 CGATGTGCCGCCGAGCCACCAGCGCGATTC 15 153 0 CCGAGCCACC 0.939989 -148 ACGGCGTCAAGGCCGACAGCCACAGCTGCA 15 197 0 GGCCGACAGC 0.71104 -104 TGTATCTGCAGCCGGCGACCGGATCTGCCC 15 241 1 GCCGGCGACC 0.651522 -60 CGCGAACCGCCGGAGCCGGCGAGTAGACGC 16 64 0 CGGAGCCGGC 0.982317 -96 CTGTCGCGGGCACCGCGAACCGCCGGAGCC 16 77 0 CACCGCGAAC 0.641657 -83 TTCGCGGTGCCCGCGACAGCCAGCATGTGG 16 88 1 CCGCGACAGC 0.844891 -72 CGCTAGGGGCCCGCGCGGGCTGCTAGTAAT 17 26 0 CCGCGCGGGC 0.993818 -257 AGTCGGTCATGAGCGCCAGCGTCAAGCCCC 17 133 1 GAGCGCCAGC 0.94373 -150 TTGGAGGGTTGCCGGCCAGCAAGCCGGGGC 17 158 0 GCCGGCCAGC 0.668825 -125 TGGTCATCACCCGGGGCACCCCACCGCGGT 17 187 0 CCGGGGCACC 0.806536 -96 GCGCTTGCCGCGCAGCCGGCGATGGCTACT 17 222 0 CGCAGCCGGC 0.976624 -61 GCGGCAAGCGCGGGTCCGCCATGACGGGCC 17 241 1 CGGGTCCGCC 0.9464 -42 CGTCTGGTCAGGGGCCCGTCATGGCGGACC 17 253 0 GGGGCCCGTC 0.915326 -30 ACCGTAGCTGCCGCGTGGCCAGCAACCGAC 18 26 0 CCGCGTGGCC 0.957549 -275 ATACTAACTCGTCAGCCGGCGGCACCGTAG 18 49 0 GTCAGCCGGC 0.818817 -252 GATCCGGTCGGGGCTTCGTCCGTGCAGCAG 18 158 0 GGGCTTCGTC 0.477582 -143 TCCGTCAAGCGGGCGTGATCCGGTCGGGGC 18 174 0 GGGCGTGATC 0.574861 -127 CCTCCGGGTGCGGCCCCGTCGAATCCGCAA 18 241 1 CGGCCCCGTC 0.947832 -60 AGACTTTCTGCGCGGCCGCCTTTGCGGATT 18 262 0 CGCGGCCGCC 0.831879 -39 ********** Masking position 10 Map Score: 151.491 Number of sites scoring better than the average of aligned sites = 104624 Number in coding regions = 98411 Number in noncoding regions = 6213 Number of orfs with sites within 600 bp upstream = 1613 Fraction of orfs with sites within 600 bp upstream = 0.259075 Motif number 3 CGTACGTGCGGCCGGGCCGATCCCAAGCGA 1 29 1 GCCGGGCCGA 0.516007 -84 CCGGCGCGTTGCCGGCCCGCTATACCAAGA 2 48 1 GCCGGCCCGC 0.508496 -166 CCCGGAAGTTGTCGCCACGCGTCCAGAAAA 3 103 0 GTCGCCACGC 0.691939 -198 GGCGACAACTTCCGGGCAGGACGCTGACGC 3 117 1 TCCGGGCAGG 0.708846 -184 GCCCCGGTCCGCCGGGTCGGGGACCCCTCT 3 175 0 GCCGGGTCGG 0.90816 -126 GGGCTGGCCGGCCGCGCCGCATTGCGCCCG 3 209 0 GCCGCGCCGC 0.503347 -92 CGAGTGCGGTCGCGCGCCGACGGCCCGGCC 3 250 1 CGCGCGCCGA 0.741427 -51 CATGAGCGGTGTGGGGCCGGGCCGTCGGCG 3 264 0 GTGGGGCCGG 0.922762 -37 CTCCGCAAGCGTCGCTCGGGCCCTTCATTG 4 12 0 GTCGCTCGGG 0.76445 -27 CGTCTCGCTCCGCAAGCGTCGCT 4 26 0 CTCGCTCCGC 0.563096 -13 GGCCGCGGGGTCTGGGCGGGCCATATCGGC 6 30 0 TCTGGGCGGG 0.529428 -22 CCGGCCGCGGGGTCTGGGCG 6 42 0 CCGGCCGCGG 0.828536 -10 CGACGCAGCATCTGCTGGGGGTTTGCTGAT 7 12 0 TCTGCTGGGG 0.347807 -289 CCCAGCAGATGCTGCGTCGGCGAACGATCA 7 23 1 GCTGCGTCGG 0.771674 -278 CGGCTTGGACTTTGCGCCGGCGAGACGCGC 7 115 1 TTTGCGCCGG 0.736956 -186 AGGGTTTGTTGCGGCGTCGGCGCGTCTCGC 7 134 0 GCGGCGTCGG 0.87831 -167 CGAGTACGGGTCGGCGCAGGGTTTGTTGCG 7 151 0 TCGGCGCAGG 0.56928 -150 TAGATTGAGACGCGGCACGCAAACGTGCTG 7 187 1 CGCGGCACGC 0.484757 -114 AACCGCGCCAGGTGGGCAGGGCTGGAGCGC 7 247 0 GGTGGGCAGG 0.806971 -54 GATACCACTCCGGGCGCCGCTGACAAGCTC 8 31 1 CGGGCGCCGC 0.71807 -54 ATCAGCTCGCGCGGCTACGCGCGGCAAGCA 9 14 0 GCGGCTACGC 0.828571 -41 CGCGAGCTGATCCGCGCTGCAGAATGACTG 9 33 1 TCCGCGCTGC 0.890133 -22 GCTATCCCAGTCGGCCCAGCTTGTGATACA 10 24 0 TCGGCCCAGC 0.497862 -222 GATAGCACCGGCTGCGGCGAGAACCATCGG 10 48 1 GCTGCGGCGA 0.709722 -198 GACCACGCCGCCCGCGCGGGCGACGATGCG 10 109 1 CCCGCGCGGG 0.49924 -137 CGGGCGACGATGCGGGCCGAAACGGCCCGC 10 125 1 TGCGGGCCGA 0.770076 -121 GCCGAAACGGCCCGCTGAGGAGCCGCGCCA 10 140 1 CCCGCTGAGG 0.598941 -106 GCAGTCGCCCGCGGGGCTGATGGCGCGGCT 10 160 0 GCGGGGCTGA 0.827311 -86 TGCCTCGTCCGGCGGGTCGCGACGACCAGG 10 189 0 GGCGGGTCGC 0.71532 -57 TGGCTCCGATGGGGCGCCGGCTGGCGGCTC 11 13 0 GGGGCGCCGG 0.925953 -288 AGCCAGCGAACCCGGTCCGGTGTCCGGCAA 11 38 1 CCCGGTCCGG 0.865217 -263 CGGTCCGGTGTCCGGCAAGCCCAGCGTCTT 11 50 1 TCCGGCAAGC 0.568661 -251 TGCCGGGATAGTCGGGCGGCGATTTCGCCG 11 79 1 GTCGGGCGGC 0.818451 -222 AACCTGGTTATCGGGTCTGCCCGATGACGG 11 106 0 TCGGGTCTGC 0.743269 -195 GCCCTATTGTGGGGCCATGGTCGGCAAGAT 11 161 0 GGGGCCATGG 0.751336 -140 CCACAATAGGGCCGGGGAGACCCGGCGTCA 11 179 1 GCCGGGGAGA 0.755572 -122 GTCAGTGGTGGGCGGCACGGTCAGTAACGT 11 205 1 GGCGGCACGG 0.844193 -96 TCAACCCCGTGTTGCGCAGACGTTACTGAC 11 224 0 GTTGCGCAGA 0.343232 -77 CTCCATAGCGTCGGCCGCGGATACAGTAAA 11 271 1 TCGGCCGCGG 0.899669 -30 GCAAGGGGAGTGCGCGGTGAGT 12 3 0 TGCGCGGTGA 0.422503 -92 CCCCTTGCGGGCCGCCCCGCAACGCTTCTG 12 25 1 GCCGCCCCGC 0.503433 -70 CCGCAACGCTTCTGGCCGGGCATCGGTAAC 12 41 1 TCTGGCCGGG 0.494222 -54 CGGGGCGAAGAAACGAAGGTG 13 2 1 GGGGCGAAGA 0.460543 -60 ACAGGTATTCGCCGGTGAGACG 13 50 1 GCCGGTGAGA 0.411365 -12 GGATCGCCCTCGGGCGATGGCCAAGGTGCA 14 43 1 CGGGCGATGG 0.624317 -258 GGTGCACCATGCCGGCGTGGACGGGGTGCC 14 67 1 GCCGGCGTGG 0.917844 -234 CGACATCAGGTTGGCGCTGGCACCCCGTCC 14 85 0 TTGGCGCTGG 0.83334 -216 CGCGTCGGCCTCGGCGGTGCACAACTGCGA 14 112 0 TCGGCGGTGC 0.85466 -189 ATCCGGCACGGGCGCGTCGGCCTCGGCGGT 14 124 0 GGCGCGTCGG 0.850931 -177 ACCGGACGTATGGGGGATGGCCGACGAGTT 14 189 1 TGGGGGATGG 0.611298 -112 GAGTTCGCCATCGGCGATGGCAGGACTGCT 14 214 1 TCGGCGATGG 0.863051 -87 GACGGTGGCCGCTGGCCAGGATCTCGGGTC 14 266 1 GCTGGCCAGG 0.582252 -35 GGCCAGGATCTCGGGTCTGCTCTGGCAGCA 14 279 1 TCGGGTCTGC 0.743269 -22 CCGGGTCGGCCTATCCATCC 15 1 1 CCGGGTCGGC 0.535868 -300 ATTTGACCAGGTCGCGCAGCTGCACGCCAT 15 71 1 GTCGCGCAGC 0.861587 -230 ACGGTGACATTCTGCCATGGATGGCGTGCA 15 91 0 TCTGCCATGG 0.468606 -210 GCGCGGGTTCTTGGCGGCGGTCACGGTGAC 15 113 0 TTGGCGGCGG 0.772876 -188 TTCGCAGATCGGGGCGCGGGTTCTTGGCGG 15 126 0 GGGGCGCGGG 0.897464 -175 CGATCTGCGAATCGCGCTGGTGGCTCGGCG 15 145 1 ATCGCGCTGG 0.42754 -156 AGGTCGATGTGCCGCCGAGCCACCAGCGCG 15 157 0 GCCGCCGAGC 0.866208 -144 TCGACCTCAAGCGGGTCTGCAGCTGTGGCT 15 180 1 GCGGGTCTGC 0.884841 -121 TGCAGATACAGGTGGGCTGGGTTTACGGCG 15 221 0 GGTGGGCTGG 0.84412 -80 CGCCGCTTGTTCCGGGAGGGGCAGATCCGG 15 259 0 TCCGGGAGGG 0.827382 -42 AAGAACATGATGGGCGCTGGTGCCCATCAT 16 32 0 TGGGCGCTGG 0.912002 -128 CGTCTACTCGCCGGCTCCGGCGGTTCGCGG 16 65 1 CCGGCTCCGG 0.792062 -95 GCTCCGGCGGTTCGCGGTGCCCGCGACAGC 16 78 1 TTCGCGGTGC 0.54039 -82 CAGCCAGCATGTGGGCCCGGAGCCTATAGA 16 104 1 GTGGGCCCGG 0.891206 -56 TGGTTGACTAGCGGCCATGGTGTGGGAGGA 16 134 1 GCGGCCATGG 0.896329 -26 TTACTAGCAGCCCGCGCGGGCCCCTAGCGG 17 27 1 CCCGCGCGGG 0.49924 -256 CCCTTTACCGGCCGCTAGGGGCCCGCGCGG 17 38 0 GCCGCTAGGG 0.803553 -245 GCACTGAGTAGCTGCCATGCGCTAGGCTTC 17 102 1 GCTGCCATGC 0.592178 -181 TTGGAGGGTTGCCGGCCAGCAAGCCGGGGC 17 158 0 GCCGGCCAGC 0.529887 -125 CAACCCTCCAACCGCGGTGGGGTGCCCCGG 17 177 1 ACCGCGGTGG 0.588566 -106 ACCGCGGTGGGGTGCCCCGGGTGATGACCA 17 187 1 GGTGCCCCGG 0.876355 -96 ACCCGCGCTTGCCGCGCAGCCGGCGATGGC 17 226 0 GCCGCGCAGC 0.513239 -57 CGCGGCAAGCGCGGGTCCGCCATGACGGGC 17 240 1 GCGGGTCCGC 0.806477 -43 GCTTTCCCCGTCTGGTCAGGGGCCCGTCAT 17 261 0 TCTGGTCAGG 0.501224 -22 CACCGTAGCTGCCGCGTGGCCAGCAACCGA 18 27 0 GCCGCGTGGC 0.737148 -274 CAGTGAACGCTTGGCCCTGGAATCGGACTC 18 131 0 TTGGCCCTGG 0.719652 -170 GCGGGCGTGATCCGGTCGGGGCTTCGTCCG 18 166 0 TCCGGTCGGG 0.83028 -135 TGTCCGTCAAGCGGGCGTGATCCGGTCGGG 18 176 0 GCGGGCGTGA 0.634878 -125 CCCGGAGGTAGCGGGCAAGACCCCTTCGGT 18 219 0 GCGGGCAAGA 0.469466 -82 TGCGGATTCGACGGGGCCGCACCCGGAGGT 18 240 0 ACGGGGCCGC 0.620864 -61 CGCAAAGGCGGCCGCGCAGAAAGTCTGCTG 18 266 1 GCCGCGCAGA 0.525027 -35 ********** Masking position 4 Map Score: 119.445 Number of sites scoring better than the average of aligned sites = 97223 Number in coding regions = 90885 Number in noncoding regions = 6338 Number of orfs with sites within 600 bp upstream = 1617 Fraction of orfs with sites within 600 bp upstream = 0.259717 Motif number 4 GGTATAGCGGGCCGGCAACGCGCCGGACACAGC 2 41 0 GCGCAACCGC 0.873929 -173 GCTTCCGGTGAACGCCGAGGTGGAACTTAAGCG 2 92 0 ACGCGAGTGG 0.801604 -122 GACGGTGGCCGCCGTCAACTTGGTTAGAACAAC 3 22 1 GCGCAACTGG 0.682006 -279 GATACCCGATGTTGACGAGAGGGGTCCCCGACC 3 158 1 GTGCGAGGGG 0.875124 -143 CCGCATTGCGCCCGTCAAGCCCCGGTCCGCCGG 3 190 0 CCGCAAGCCC 0.98225 -111 ATGCGGCGCGGCCGGCCAGCCCGTAACGTCCAG 3 217 1 GCGCCAGCCG 0.97693 -84 AGTGCGGTCGCGCGCCGACGGCCCGGCCCCACA 3 252 1 CCGCGACGCC 0.779849 -49 GATGACCCTCCTCGTCATGAGCGGTGTGGGGCC 3 276 0 CCGCATGGCG 0.817616 -25 GTGTCCGAGAGCGGTCGAGCGCCACCACAATGA 5 23 1 GGGCGAGGCC 0.801163 -34 GCCGATATGGCCCGCCCAGACCCCGCGGCCGG 6 30 1 CCGCCAGCCC 0.937109 -22 TGGACTTTGCGCCGGCGAGACGCGCCGACGCCG 7 120 1 GCGCGAGCGC 0.990544 -181 GTTATCAGCCCAAGACGAGCCCGACACCGGTGC 7 216 1 CAGCGAGCCG 0.780656 -85 CGTGGCGAACCGCGCCAGGTGGGCAGGGCTGGA 7 251 0 CCGCAGGGGG 0.796672 -50 CGCCCGCGCGGGCGACGATGCGGGCCGAAACGG 10 117 1 GCGCGATCGG 0.888051 -129 CGACTGCCTGGTCGTCGCGACCCGCCGGACGAG 10 183 1 GCGCGCGCCC 0.882723 -63 ATCCACAAGAGTCGCCAAGTGGGGCATACTGGG 10 218 1 GCGCAAGGGG 0.983276 -28 GCCCGACTATCCCGGCAAGACGCTGGGCTTGCC 11 63 0 CCGCAAGCGC 0.978211 -238 GGGATAGTCGGGCGGCGATTTCGCCGTCATCGG 11 83 1 GCGCGATTCG 0.630215 -218 TGGGGCCATGGTCGGCAAGATCGTAACCGGTGG 11 149 0 GCGCAAGTCG 0.964921 -152 CCACAATAGGGCCGGGGAGACCCGGCGTCAGTG 11 179 1 GCGGGAGCCC 0.800945 -122 CCCCGTCCACGCCGGCATGGTGCACCTTGGCCA 14 60 0 GCGCATGTGC 0.555376 -241 GCAGTTGTGCACCGCCGAGGCCGACGCGCCCGT 14 114 1 ACGCGAGCCG 0.96619 -187 GCCGGATCCGGTCGACGGGTCGGTGTCTTGCCC 14 147 1 GCGCGGGCGG 0.952263 -154 ATGGGGGATGGCCGACGAGTTCGCCATCGGCGA 14 198 1 GCGCGAGTCG 0.975581 -103 CACCGTGACCGCCGCCAAGAACCCGCGCCCCGA 15 115 1 GCGCAAGACC 0.762858 -186 AGGTCGATGTGCCGCCGAGCCACCAGCGCGATT 15 154 0 GCGCGAGCAC 0.830035 -147 GCGGCACATCGACCTCAAGCGGGTCTGCAGCTG 15 172 1 GCCCAAGGGG 0.652935 -129 CTGGGTTTACGGCGTCAAGGCCGACAGCCACAG 15 202 0 GCGCAAGCCG 0.993704 -99 CCATGCGCTAGGCTTCGAGTCGGTCATGAGCGC 17 116 1 GCTCGAGCGG 0.800589 -167 CATGAGCGCCAGCGTCAAGCCCCGGCTTGCTGG 17 140 1 ACGCAAGCCC 0.917241 -143 TCGCCGGCTGCGCGGCAAGCGCGGGTCCGCCAT 17 230 1 CCGCAAGGCG 0.978278 -53 TGGTCAGGGGCCCGTCATGGCGGACCCGCGCTT 17 246 0 CCGCATGCGG 0.887884 -37 ATGACGGGCCCCTGACCAGACGGGGAAAGCTC 17 261 1 CTGCCAGCGG 0.638047 -22 GGAAAGTTGGCATGTCAAGCGGGTTTTGTCATA 18 81 1 CTGCAAGGGG 0.750207 -220 CGTTTTACGACTTGTCGAGTCCGATTCCAGGGC 18 115 1 CTGCGAGCCG 0.921319 -186 CGATAGGCTGTCCGTCAAGCGGGCGTGATCCGG 18 181 0 TCGCAAGGGG 0.690189 -120 CGGACAGCCTATCGACAAGACCGAAGGGGTCTT 18 200 1 ACGCAAGCCG 0.951632 -101 CCCGGAGGTAGCGGGCAAGACCCCTTCGGTCTT 18 216 0 GGGCAAGCCC 0.858128 -85 CGGGTGCGGCCCCGTCGAATCCGCAAAGGCGGC 18 245 1 CCGCGAACCG 0.775373 -56 * ** **** *** Masking position 6 Map Score: 71.7733 Number of sites scoring better than the average of aligned sites = 21359 Number in coding regions = 20135 Number in noncoding regions = 1224 Number of orfs with sites within 600 bp upstream = 782 Fraction of orfs with sites within 600 bp upstream = 0.125602 Motif number 5 ATAATGGCTACCGTGCACGTTACACCACTC 1 57 0 CCGTGCACGT 0.534206 -56 CCGGCGCGTTGCCGGCCCGCTATACCAAGA 2 48 1 GCCGGCCCGC 0.544065 -166 TGTTCGCTTCCGGTGAACGCCGAGGTGGAA 2 100 0 CGGTGAACGC 0.893699 -114 GTGTGGTTGACGGTGGCCGCCGTCAACTTG 3 14 1 CGGTGGCCGC 0.984207 -287 TCCGCCGGGTCGGGGACCCCTCTCGTCAAC 3 168 0 CGGGGACCCC 0.896539 -133 CCCGTCAAGCCCCGGTCCGCCGGGTCGGGG 3 183 0 CCCGGTCCGC 0.905737 -118 CGCAATGCGGCGCGGCCGGCCAGCCCGTAA 3 213 1 CGCGGCCGGC 0.978596 -88 CGACCGCACTCGCTGGACGTTACGGGCTGG 3 232 0 CGCTGGACGT 0.394239 -69 TAGATTGAGACGCGGCACGCAAACGTGCTG 7 187 1 CGCGGCACGC 0.98728 -114 TGCGCTCCAGCCCTGCCCACCTGGCGCGGT 7 246 1 CCCTGCCCAC 0.698785 -55 GCCCACCTGGCGCGGTTCGCCACGACAGCC 7 260 1 CGCGGTTCGC 0.550193 -41 GATACCACTCCGGGCGCCGCTGACAAGCTC 8 31 1 CGGGCGCCGC 0.791011 -54 CGCGGCTACGCGCGGCAAGCATCG 9 5 0 CGCGGCAAGC 0.927334 -50 GCGTAGACCACGCCGCCCGCGCGGGCGACG 10 104 1 CGCCGCCCGC 0.982308 -142 CGGCCCGCATCGTCGCCCGCGCGGGCGGCG 10 114 0 CGTCGCCCGC 0.812162 -132 TGCGGGCCGAAACGGCCCGCTGAGGAGCCG 10 135 1 AACGGCCCGC 0.728125 -111 GCCTGGTCGTCGCGACCCGCCGGACGAGGC 10 188 1 CGCGACCCGC 0.929867 -58 GGCGCCCCATCGGAGCCAGCGAACCCGGTC 11 25 1 CGGAGCCAGC 0.878166 -276 CCCGATAACCAGGTTCCCGTTCGGCATGCC 11 121 1 AGGTTCCCGT 0.0460806 -180 ACGTTACTGACCGTGCCGCCCACCACTGAC 11 205 0 CCGTGCCGCC 0.507353 -96 AGCGTTGCGGGGCGGCCCGCAAGGGGAGTG 12 21 0 GGCGGCCCGC 0.7697 -74 TGGACGGCATCGGGGATCGCCCTCGGGCGA 14 30 1 CGGGGATCGC 0.78223 -271 GGCGTGGACGGGGTGCCAGCGCCAACCTGA 14 80 1 GGGTGCCAGC 0.827995 -221 ACTAACCGGCCGCTGCCAGCAGTCCTGCCA 14 231 0 CGCTGCCAGC 0.96591 -70 AGTCGGCCGACGGTGGCCGCTGGCCAGGAT 14 258 1 CGGTGGCCGC 0.984207 -43 CAGGTCGCGCAGCTGCACGCCATCCATGGC 15 78 1 AGCTGCACGC 0.860724 -223 CAGAATGTCACCGTGACCGCCGCCAAGAAC 15 107 1 CCGTGACCGC 0.930871 -194 ACCTAGGACGCGCTAAACGCCGCTTGTTCC 15 276 0 CGCTAAACGC 0.178549 -25 CGCGAACCGCCGGAGCCGGCGAGTAGACGC 16 64 0 CGGAGCCGGC 0.855328 -96 CGGCGGTTCGCGGTGCCCGCGACAGCCAGC 16 82 1 CGGTGCCCGC 0.992919 -78 TCTATAGGCTCCGGGCCCACATGCTGGCTG 16 104 0 CCGGGCCCAC 0.863899 -56 TCCTCCCACACCATGGCCGCTAGTCAACCA 16 134 0 CCATGGCCGC 0.419644 -26 TCAGATTACTAGCAGCCCGCGCGGGCCCCT 17 22 1 AGCAGCCCGC 0.847329 -261 ACCGGCCGCTAGGGGCCCGCGCGGGCTGCT 17 32 0 AGGGGCCCGC 0.848239 -251 TTGGAGGGTTGCCGGCCAGCAAGCCGGGGC 17 158 0 GCCGGCCAGC 0.658895 -125 GGTCATCACCCGGGGCACCCCACCGCGGTT 17 186 0 CGGGGCACCC 0.90476 -97 TCGCCGGCTGCGCGGCAAGCGCGGGTCCGC 17 230 1 CGCGGCAAGC 0.927334 -53 CGCGGCAAGCGCGGGTCCGCCATGACGGGC 17 240 1 GCGGGTCCGC 0.481421 -43 CCGTCTGGTCAGGGGCCCGTCATGGCGGAC 17 254 0 AGGGGCCCGT 0.724952 -29 CCTGACCAGACGGGGAAAGCTC 17 271 1 CGGGGAAAGC 0.72966 -12 GTAGCTGCCGCGTGGCCAGCAACCGACCGT 18 23 0 CGTGGCCAGC 0.821825 -278 GCGGCAGCTACGGTGCCGCCGGCTGACGAG 18 42 1 CGGTGCCGCC 0.763317 -259 GTCCGTGCAGCAGTGAACGCTTGGCCCTGG 18 141 0 CAGTGAACGC 0.270004 -160 TGCGGATTCGACGGGGCCGCACCCGGAGGT 18 240 0 ACGGGGCCGC 0.836124 -61 GAATCCGCAAAGGCGGCCGCGCAGAAAGTC 18 261 1 AGGCGGCCGC 0.74881 -40 ********** Masking position 10 Map Score: 76.9412 Number of sites scoring better than the average of aligned sites = 24240 Number in coding regions = 22700 Number in noncoding regions = 1540 Number of orfs with sites within 600 bp upstream = 880 Fraction of orfs with sites within 600 bp upstream = 0.141343 Motif number 6 TTGATGGCCGGCGTCCGACGTAC 1 4 1 ATGGCCGGCG 0.508927 -109 GACGTACGTGCGGCCGGGCCGATCCCAAGC 1 27 1 CGGCCGGGCC 0.893886 -86 ATGCCTCGGATGGAGCGGCG 1 103 1 TGGAGCGGCG 0.926203 -10 GATGGTTTTCTGGACGCGTGGCGACAACTT 3 98 1 TGGACGCGTG 0.704431 -203 GGTATCTCGATGGATGGGCGTCAGCGTCCT 3 134 0 TGGATGGGCG 0.829747 -167 GAGGGGTCCCCGACCCGGCGGACCGGGGCT 3 176 1 CGACCCGGCG 0.79893 -125 GGACCGGGGCTTGACGGGCGCAATGCGGCG 3 195 1 TTGACGGGCG 0.873894 -106 GACGGGCGCAATGCGGCGCGGCCGGCCAGC 3 207 1 ATGCGGCGCG 0.944819 -94 CCAGCGAGTGCGGTCGCGCGCCGACGGCCC 3 246 1 CGGTCGCGCG 0.72637 -55 CGCGCGCCGACGGCCCGGCCCCACACCGCT 3 260 1 CGGCCCGGCC 0.885006 -41 CCTCCTCGTCATGAGCGGTGTGGGGCCGGG 3 273 0 ATGAGCGGTG 0.23096 -28 TGGCCCGCCCAGACCCCGCGGCCGG 6 37 1 AGACCCCGCG 0.913235 -15 TAACCTAACAATGACCCGCGGCTTGGACTT 7 97 1 ATGACCCGCG 0.927428 -204 CTGCACTAGATTGAGACGCGGCACGCAAAC 7 181 1 TTGAGACGCG 0.329687 -120 ATACCACTCCGGGCGCCGCTGACAAGCTCT 8 32 1 GGGCGCCGCT 0.369071 -53 CGATGCTTGCCGCGCGTAGCCGCGCG 9 7 1 TTGCCGCGCG 0.956826 -48 TTGCCGCGCGTAGCCGCGCGAGCTGATCCG 9 17 1 TAGCCGCGCG 0.719647 -38 CTTGTGATACAGGAGGCGCCAACA 10 5 0 AGGAGGCGCC 0.865146 -241 TCGCCCGCGCGGGCGGCGTGGTCTACGCTG 10 102 0 GGGCGGCGTG 0.452042 -144 CGGCCCGCTGAGGAGCCGCGCCATCAGCCC 10 147 1 AGGAGCCGCG 0.962969 -99 CAGAGCCGCCAGCCGGCGCCCCATCGGAGC 11 11 1 AGCCGGCGCC 0.503222 -290 AGGGCCGGGGAGACCCGGCGTCAGTGGTGG 11 186 1 AGACCCGGCG 0.870264 -115 GCTCCTTTACTGTATCCGCGGCCGACGCTA 11 276 0 TGTATCCGCG 0.161918 -25 GCCAGAAGCGTTGCGGGGCGGCCCGCAAGG 12 27 0 TTGCGGGGCG 0.892054 -68 CGTGTTACCGATGCCCGGCCAGAAGCGTTG 12 44 0 ATGCCCGGCC 0.785855 -51 CGAATACCTGTGACGGCGCGAAATGATCAC 13 31 0 TGACGGCGCG 0.83887 -31 ACCGCCGCCAAGAACCCGCGCCCCGATCTG 15 122 1 AGAACCCGCG 0.837359 -179 ATCGCGCTGGTGGCTCGGCGGCACATCGAC 15 155 1 TGGCTCGGCG 0.898689 -146 CGCCGACCTAGGACGCGCTAAACGCCGCT 15 282 0 AGGACGCGCT 0.71562 -19 GCGAAAGAACATGATGGGCGCTGGTGCCCA 16 36 0 ATGATGGGCG 0.649172 -124 AACCATCTATAGGCTCCGGGCCCACATGCT 16 109 0 AGGCTCCGGG 0.404574 -51 GATTACTAGCAGCCCGCGCGGGCCCCTAGC 17 25 1 AGCCCGCGCG 0.879854 -258 TAGCCATCGCCGGCTGCGCGGCAAGCGCGG 17 224 1 CGGCTGCGCG 0.927395 -59 CCCGTCATGGCGGACCCGCGCTTGCCGCGC 17 239 0 CGGACCCGCG 0.965045 -44 CGGGTCCGCCATGACGGGCCCCTGACCAGA 17 251 1 ATGACGGGCC 0.668448 -32 GGTCGGTTGCTGGCCACGCGGCAGCTACGG 18 25 1 TGGCCACGCG 0.857538 -276 ********** Masking position 8 Map Score: 45.1794 Number of sites scoring better than the average of aligned sites = 23449 Number in coding regions = 21672 Number in noncoding regions = 1777 Number of orfs with sites within 600 bp upstream = 979 Fraction of orfs with sites within 600 bp upstream = 0.157244 Motif number 7 TGTGTCCGGCGCGTTGCCGGCCCGCTATACCA 2 43 1 GCGTTCCGGC 0.601294 -171 GTGACAGTGTTCGCTTCCGGTGAACGCCGAGG 2 105 0 TCGCTCCGGG 0.934682 -109 GAACACTGTCACACAGCCGGTCGCCAGGTGTG 2 125 1 ACACACCGGC 0.539692 -89 CATATGTGCGTCACATTCGGCGATTTTTCGGT 2 167 1 TCACATCGGG 0.403464 -47 CGCGTGGCGACAACTTCCGGGCAGGACGCTGA 3 112 1 CAACTCCGGC 0.394284 -189 GAGAGGGGTCCCCGACCCGGCGGACCGGGGCT 3 174 1 CCCGACCGGG 0.80445 -127 CGGCGCGCGACCGCACTCGCTGGACGTTACGG 3 237 0 CCGCATCGCG 0.9207 -64 GGCCCGAGCGACGCTTGCGGAGCGAGACG 4 20 1 ACGCTGCGGG 0.789383 -19 TGGCGCTCGACCGCTCTCGGACACGAGACAGC 5 15 0 CCGCTTCGGC 0.959306 -42 CCGGCCGCGGGGTCTGGGCGGG 6 40 0 CCGGCGCGGG 0.898901 -12 CTGCGCCGACCCGTACTCGCTGCACTAGATTG 7 162 1 CCGTATCGCG 0.69138 -139 CTGGAGCGCACCGGTGTCGGGCTCGTCTTGGG 7 224 0 CCGGTTCGGC 0.844736 -77 ATCGGAGAATCCTCAAGCGGGCA 8 2 0 CCTCAGCGGC 0.900061 -83 TTCTCCGATACCACTCCGGGCGCCGCTGACAA 8 25 1 CCACTCGGGG 0.447608 -60 CAGCGCGGATCAGCTCGCGCGGCTACGCGCGG 9 20 0 CAGCTGCGCG 0.444282 -35 GCCGGTGCTATCCCAGTCGGCCCAGCTTGTGA 10 28 0 TCCCATCGGC 0.349116 -218 ATGGTTCTCGCCGCAGCCGGTGCTATCCCAGT 10 43 0 CCGCACCGGG 0.993559 -203 GTAGACCACGCCGCCCGCGCGGGCGACGATGC 10 106 1 CCGCCGCGCG 0.769146 -140 TGGCGCGGCTCCTCAGCGGGCCGTTTCGGCCC 10 138 0 CCTCACGGGC 0.605246 -108 GACCAGGCAGTCGCCCGCGGGGCTGATGGCGC 10 164 0 TCGCCGCGGG 0.838866 -82 CTTGTGGATGCCTCGTCCGGCGGGTCGCGACG 10 195 0 CCTCGCCGGG 0.786481 -51 GGCGATTTCGCCGTCATCGGGCAGACCCGATA 11 96 1 CCGTCTCGGC 0.77972 -205 GTCGGCAAGATCGTAACCGGTGGCATGCCGAA 11 140 0 TCGTACCGGG 0.816425 -161 TGCTCCTTTACTGTATCCGCGGCCGACGCTAT 11 275 0 CTGTACCGCG 0.429527 -26 GCGGGGCGGCCCGCAAGGGGAGTGCGCGGTGA 12 13 0 CCGCAGGGGG 0.857246 -82 CCGCCCCGCAACGCTTCTGGCCGGGCATCGGT 12 36 1 ACGCTCTGGC 0.114973 -59 GCATCGGGGATCGCCCTCGGGCGATGGCCAAG 14 36 1 TCGCCTCGGC 0.723124 -265 CGCGCCCGTGCCGGATCCGGTCGACGGGTCGG 14 138 1 CCGGACCGGC 0.971088 -163 TTGCCCGGATCTGTTACCGGACGTATGGGGGA 14 174 1 CTGTTCCGGC 0.592032 -127 GCCGACGAGTTCGCCATCGGCGATGGCAGGAC 14 208 1 TCGCCTCGGG 0.763484 -93 TGGCCAGCGGCCACCGTCGGCCGACTAACCGG 14 252 0 CCACCTCGGC 0.661722 -49 CAGAATGTCACCGTGACCGCCGCCAAGAACCC 15 107 1 CCGTGCCGCG 0.544399 -194 AGCTGCAGACCCGCTTGAGGTCGATGTGCCGC 15 172 0 CCGCTGAGGC 0.420313 -129 CCACCTGTATCTGCAGCCGGCGACCGGATCTG 15 236 1 CTGCACCGGG 0.942306 -65 CCGCGAACCGCCGGAGCCGGCGAGTAGACGCG 16 63 0 CCGGACCGGG 0.976474 -97 CCGGCTCCGGCGGTTCGCGGTGCCCGCGACAG 16 75 1 CGGTTGCGGG 0.438504 -85 CTCAACTGGCCCTTTACCGGCCGCTAGGGGCC 17 45 0 CCTTTCCGGC 0.685923 -238 CCGGGGCTTGACGCTGGCGCTCATGACCGACT 17 133 0 ACGCTGCGCC 0.428353 -150 GCCGGCAACCCTCCAACCGCGGTGGGGTGCCC 17 172 1 CTCCACCGCG 0.264865 -111 TCAACCTGGTCATCACCCGGGGCACCCCACCG 17 191 0 CATCACCGGG 0.652651 -92 CGCGCTTGCCGCGCAGCCGGCGATGGCTACTC 17 221 0 GCGCACCGGG 0.944527 -62 GCCCGTCATGGCGGACCCGCGCTTGCCGCGCA 17 238 0 GCGGACCGCC 0.443736 -45 GCCGCGTGGCCAGCAACCGACCGTATCGTCAC 18 15 0 CAGCACCGAC 0.191018 -286 AATACTAACTCGTCAGCCGGCGGCACCGTAGC 18 48 0 CGTCACCGGG 0.694322 -253 ACGCTTGGCCCTGGAATCGGACTCGACAAGTC 18 123 0 CTGGATCGGC 0.460866 -178 ATAGGCTGTCCGTCAAGCGGGCGTGATCCGGT 18 180 0 CGTCAGCGGC 0.449521 -121 TTCGACGGGGCCGCACCCGGAGGTAGCGGGCA 18 232 0 CCGCACCGGG 0.993974 -69 ***** **** * Masking position 9 Map Score: 60.5316 Number of sites scoring better than the average of aligned sites = 32909 Number in coding regions = 30792 Number in noncoding regions = 2117 Number of orfs with sites within 600 bp upstream = 983 Fraction of orfs with sites within 600 bp upstream = 0.157886 Motif number 8 GCTTCGTTGTGAGTTAGCTGTGTCCGGCGC 2 25 1 GAGTTAGCTG 0.85476 -189 TGGACGTTACGGGCTGGCCGGCCGCGCCGC 3 219 0 GGGCTGGCCG 0.940901 -82 CATCTGCTGGGGGTTTGCTGATG 7 4 0 GGGTTTGCTG 0.944237 -297 GGTCGGCGCAGGGTTTGTTGCGGCGTCGGC 7 143 0 GGGTTTGTTG 0.799904 -158 CCACCTGGCGCGGTTCGCCACGACAGCCTT 7 262 1 CGGTTCGCCA 0.808252 -39 TTCGATGTCTGAGTTAGCCGATGGTTCTCG 10 65 0 GAGTTAGCCG 0.952726 -181 ACACCGGACCGGGTTCGCTGGCTCCGATGG 11 31 0 GGGTTCGCTG 0.98101 -270 GCAAGACGCTGGGCTTGCCGGACACCGGAC 11 52 0 GGGCTTGCCG 0.942986 -249 GCGTCTTGCCGGGATAGTCGGGCGGCGATT 11 73 1 GGGATAGTCG 0.805355 -228 GTCGGGCGGCGATTTCGCCGTCATCGGGCA 11 89 1 GATTTCGCCG 0.670501 -212 GATGGGTTCGTCGAAGGGGTGGA 14 4 1 GGGTTCGTCG 0.976711 -297 GGACGTATGGGGGATGGCCGACGAGTTCGC 14 192 1 GGGATGGCCG 0.921759 -109 GATGGCCGACGAGTTCGCCATCGGCGATGG 14 204 1 GAGTTCGCCA 0.855517 -97 TGGCAGCGGCCGGTTAGTCGGCCGACGGTG 14 243 1 CGGTTAGTCG 0.772411 -58 CGGCAAGCGCGGGTCCGCCATGACGGGCCC 17 242 1 GGGTCCGCCA 0.776045 -41 GTCTGCTGAAGGGTTAGGTGGGT 18 288 1 GGGTTAGGTG 0.742861 -13 ********** Masking position 7 Map Score: 18.8358 Number of sites scoring better than the average of aligned sites = 5083 Number in coding regions = 4750 Number in noncoding regions = 333 Number of orfs with sites within 600 bp upstream = 282 Fraction of orfs with sites within 600 bp upstream = 0.0452939 Motif number 9 GCTTGGGATCGGCCCGGCCGCACGTACGTCGGA 1 24 0 GGCCCCGCAC 0.97855 -89 TATACATAATGGCTACCGTGCACGTTACACCAC 1 59 0 GGCAGTGCAC 0.988095 -54 AGTTGACGGCGGCCACCGTCAACCACACCGT 3 9 0 GGCAGTCAAC 0.794711 -292 GCGCGCCGACGGCCCGGCCCCACACCGCTCATG 3 261 1 GGCCCCCCAC 0.97855 -40 AATCAGCTTAGGCTAGACTCCACTAATATGCGG 7 55 0 GGCACTCCAC 0.98925 -246 GTCATTGTTAGGTTAGACTCCACTAATCAGCTT 7 79 0 GGTACTCCAC 0.802476 -222 AGGTGGGCAGGGCTGGAGCGCACCGGTGTCGGG 7 235 0 GGCGGCGCAC 0.935749 -66 CGGGGCTGATGGCGCGGCTCCTCAGCGGGCCGT 10 146 0 GGCCCTCCTC 0.868415 -100 CCTATTGTGGGGCCATGGTCGGCAAGATCGTAA 11 156 0 GGCAGTCGGC 0.405824 -145 CTCGGGCGATGGCCAAGGTGCACCATGCCGGCG 14 51 1 GGCAGTGCAC 0.988095 -250 AACCTGATGTCGCAGTTGTGCACCGCCGAGGCC 14 103 1 CGCGGTGCAC 0.769641 -198 CGAACTCGTCGGCCATCCCCCATACGTCCGGTA 14 188 0 GGCACCCCAT 0.717108 -113 CCGAGATCCTGGCCAGCGGCCACCGTCGGCCGA 14 260 0 GGCAGGCCAC 0.972225 -41 TTGACCAGGTCGCGCAGCTGCACGCCATCCATG 15 73 1 CGCCCTGCAC 0.912823 -228 TCGCGCTGGTGGCTCGGCGGCACATCGACCTCA 15 156 1 GGCCCGGCAC 0.972028 -145 GAACATGATGGGCGCTGGTGCCCATCATGTTCT 16 27 0 GGCCGTGCCC 0.898152 -133 CTTGCTGGCCGGCAACCCTCCAACCGCGGTGGG 17 165 1 GGCACTCCAA 0.820291 -118 GTCGGTTGCTGGCCACGCGGCAGCTACGGTGCC 18 26 1 GGCACGGCAG 0.740952 -275 CGATTCCAGGGCCAAGCGTTCACTGCTGCACGG 18 136 1 GCCAGTTCAC 0.321777 -165 *** * ****** Masking position 3 Map Score: 21.6391 Number of sites scoring better than the average of aligned sites = 2873 Number in coding regions = 2605 Number in noncoding regions = 268 Number of orfs with sites within 600 bp upstream = 243 Fraction of orfs with sites within 600 bp upstream = 0.0390299 Motif number 10 AACCTGAGTCGACCACGCTTAAGTTCCACC 2 77 1 GACCACGCTT 0.881917 -137 ATGACGCTGTGATCACACCTGGCGACCGGC 2 140 0 GATCACACCT 0.916689 -74 GGCCACCGTCAACCACACCGT 3 2 0 AACCACACCG 0.836399 -299 GTCGGCGAACGATCAAGCCGCATATTAGTG 7 38 1 GATCAAGCCG 0.898704 -263 CCGGCGCAAAGTCCAAGCCGCGGGTCATTG 7 105 0 GTCCAAGCCG 0.907232 -196 GACCACTCCTATGGGATATA 7 291 0 GACCACTCCT 0.95969 -10 GATTCTCCGATACCACTCCGGGCGCCGCTG 8 23 1 TACCACTCCG 0.781081 -62 ACGCAGCGTAGACCACGCCGCCCGCGCGGG 10 99 1 GACCACGCCG 0.994974 -147 GGCGCGAAATGATCACACCTTCGTTTCTTC 13 17 0 GATCACACCT 0.916689 -45 CCCCGATGCCGTCCACCCCTTCGACGAACC 14 15 0 GTCCACCCCT 0.876763 -286 CTGGCACCCCGTCCACGCCGGCATGGTGCA 14 69 0 GTCCACGCCG 0.985992 -232 GCCCCGACCGGATCACGCCCGCTTGACGGA 18 174 1 GATCACGCCC 0.924675 -127 ********** Masking position 5 Map Score: 15.2887 Number of sites scoring better than the average of aligned sites = 2762 Number in coding regions = 2581 Number in noncoding regions = 181 Number of orfs with sites within 600 bp upstream = 177 Fraction of orfs with sites within 600 bp upstream = 0.0284292 Motif number 11 TGCCCGTAGCGATTACGATGGTTTTCTGGAC 3 82 1 GATACGATGG 0.970633 -219 GGCCCTAGGGGATGATGATGGT 6 2 0 GATATGATGG 0.982562 -50 AGGCGCAAAAGAACATGATGGGCACCAGCGC 16 18 1 GAAATGATGG 0.982562 -142 AGACGCGAAAGAACATGATGGGCGCTGGTGC 16 39 0 GAAATGATGG 0.982562 -121 *** ******* Masking position 5 Map Score: 0.383898 Number of sites scoring better than the average of aligned sites = 19 Number in coding regions = 10 Number in noncoding regions = 9 Number of orfs with sites within 600 bp upstream = 7 Fraction of orfs with sites within 600 bp upstream = 0.00112432 Motif number 12 ACGTCGGACGCCGGCCATCAA 1 2 0 CCGGCCATCA 0.861103 -111 CGCCGCTCCATCCGAGGCATATG 1 100 0 CGCTCCATCC 0.844559 -13 ACGCTGACGCCCATCCATCGAGATACCCGA 3 137 1 CCATCCATCG 0.970884 -164 TGCGGCGCGGCCGGCCAGCCCGTAACGTCC 3 218 1 CCGGCCAGCC 0.882997 -83 ATCCGCCCTCCCATCGCTGTTCGAGT 8 69 0 CCTCCCATCG 0.946526 -16 CGCCAGCCGGCGCCCCATCGGAGCCAGCGA 11 17 1 CGCCCCATCG 0.887855 -284 TCCCGTTCGGCATGCCACCGGTTACGATCT 11 135 1 CATGCCACCG 0.554467 -166 ACGCTTCTGGCCGGGCATCGGTAACACGGT 12 46 1 CCGGGCATCG 0.855488 -49 ATCCCCGATGCCGTCCACCCCTTCGACGAA 14 17 0 CCGTCCACCC 0.926678 -284 GGCAAGACACCGACCCGTCGACCGGATCCG 14 149 0 CGACCCGTCG 0.522863 -152 TGCCAGCAGTCCTGCCATCGCCGATGGCGA 14 218 0 CCTGCCATCG 0.971715 -83 GTCGGCCTATCCATCCATCCAGGCTTGTTG 15 15 1 CCATCCATCC 0.951084 -286 CAGCTGCACGCCATCCATGGCAGAATGTCA 15 87 1 CCATCCATGG 0.740402 -214 TGGCCGGCAACCCTCCAACCGCGGTGGGGT 17 170 1 CCCTCCAACC 0.707779 -113 TGCCGCGTGGCCAGCAACCGACCGTATCGT 18 18 0 CCAGCAACCG 0.611555 -283 ********** Masking position 1 Map Score: 7.84914 Number of sites scoring better than the average of aligned sites = 4762 Number in coding regions = 4439 Number in noncoding regions = 323 Number of orfs with sites within 600 bp upstream = 306 Fraction of orfs with sites within 600 bp upstream = 0.0491487 Motif number 13 TCGCTTGGGATCGGCCCGGCCGCACGTACG 1 29 0 TCGGCCCGGC 0.94136 -84 TTTTCGGTAATTTGCCCCTCATACCCTCAG 2 191 1 TTTGCCCCTC 0.967612 -23 CGCGCCGCATTGCGCCCGTCAAGCCCCGGT 3 197 0 TGCGCCCGTC 0.710721 -104 TGTTGGCGCCTCCTGTATCACA 10 3 1 TTGGCGCCTC 0.734893 -243 CAGCCGGTGCTATCCCAGTCGGCCCAGCTT 10 32 0 TATCCCAGTC 0.228966 -214 AGCCGCGCCATCAGCCCCGCGGGCGACTGC 10 160 1 TCAGCCCCGC 0.827599 -86 GGCGCCCCAGTATGCCCCACTTGGCGACTC 10 226 0 TATGCCCCAC 0.770456 -20 CGGGCGGCGATTTCGCCGTCATCGGGCAGA 11 91 1 TTTCGCCGTC 0.582079 -210 GGTTATCGGGTCTGCCCGATGACGGCGAAA 11 101 0 TCTGCCCGAT 0.508262 -200 CTTGCCGACCATGGCCCCACAATAGGGCCG 11 163 1 ATGGCCCCAC 0.507471 -138 TGACGCCGGGTCTCCCCGGCCCTATTGTGG 11 179 0 TCTCCCCGGC 0.914933 -122 TGGAGCCGATATTGCCCGTCAGTCAACCCC 11 246 0 ATTGCCCGTC 0.88503 -55 GGCGACCGGATCTGCCCCTCCCGGAACAAG 15 254 1 TCTGCCCCTC 0.971916 -47 CAAGCGGCGTTTAGCGCGTCCTAGGTCGGC 15 280 1 TTAGCGCGTC 0.6463 -21 GAGCTTTCCCCGTCTGGTCAGGGG 17 269 0 TTTCCCCGTC 0.943208 -14 ********** Masking position 7 Map Score: 5.04987 Number of sites scoring better than the average of aligned sites = 3142 Number in coding regions = 2820 Number in noncoding regions = 322 Number of orfs with sites within 600 bp upstream = 290 Fraction of orfs with sites within 600 bp upstream = 0.0465789 Motif number 14 ********** No masking Map Score: 1.3033e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: 1.3033e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0