AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i199_trans1_mpneu_reg_300.orf -o199_mpneu_300.ace -a/home/amcguire/alignace/lib/ORF_mpneu.txt -z/skink1/amcguire/genomes/mpneu.fna -g0.40 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.4 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: RMP00396 22 Mycoplasma_pneumoniae RMP00371 18 Mycoplasma_pneumoniae RMP00605 22 Mycoplasma_pneumoniae Input sequences: #1 RMP00178 84 Mycoplasma_pneumoniae #2 RMP00304 37 Mycoplasma_pneumoniae #3 RMP00305 117 Mycoplasma_pneumoniae #4 RMP00326 300 Mycoplasma_pneumoniae #5 RMP00327 92 Mycoplasma_pneumoniae #6 RMP00368 300 Mycoplasma_pneumoniae #7 RMP00387 300 Mycoplasma_pneumoniae #8 RMP00388 88 Mycoplasma_pneumoniae #9 RMP00389 20 Mycoplasma_pneumoniae #10 RMP00391 39 Mycoplasma_pneumoniae #11 RMP00394 116 Mycoplasma_pneumoniae #12 RMP00395 63 Mycoplasma_pneumoniae #13 RMP00590 273 Mycoplasma_pneumoniae #14 RMP00596 197 Mycoplasma_pneumoniae #15 RMP00597 24 Mycoplasma_pneumoniae #16 RMP00598 300 Mycoplasma_pneumoniae #17 RMP00604 56 Mycoplasma_pneumoniae #18 RMP00606 53 Mycoplasma_pneumoniae #19 RMP00607 28 Mycoplasma_pneumoniae #20 RMP00613 55 Mycoplasma_pneumoniae #21 RMP00617 275 Mycoplasma_pneumoniae #22 RMP00668 93 Mycoplasma_pneumoniae #23 RMP00669 246 Mycoplasma_pneumoniae #24 RMP00670 121 Mycoplasma_pneumoniae #25 RMP00671 153 Mycoplasma_pneumoniae #26 RMP00673 25 Mycoplasma_pneumoniae #27 RMP00677 300 Mycoplasma_pneumoniae Motif number 1 aaaatataaatgaataattaataaatactcccca 2 14 0 ataagaaata 0.923264 -24 tttgatcacgataaaagagaataactgcaagctgttagaag 4 53 1 aaaagaaaag 0.746906 -248 gagttttataaggaaaaagcacaagcaaaaatcaatgaact 4 104 1 aaaagaaaaa 0.961226 -197 ttgatcaaagaaagaaaagctcaagaattaaggaaaagtaa 4 152 1 agaagtaata 0.600801 -149 aaaattgttaattaaagcggagaaaacttaatttaattttt 4 239 0 aaaagaaata 0.9693 -62 tcgtgtacaaaaaagggctaaaaataacagtaaaaagcc 5 64 0 aaaagtaaaa 0.789048 -29 gcttaattgctaataaatgcaaaattatagaaaggggatac 7 236 0 ttaagaaaaa 0.587694 -65 taaaatcatcacgaaaaagaataaaatcccaatcaaaaagt 13 220 1 aaaagaaaca 0.868151 -54 taaaatcccaatcaaaaagtaaaacgcgaaattttagattg 13 241 1 aaaagaaaaa 0.961226 -33 gttgtttgtttcgaaatcgtaaaaagtaataaaaagaatac 14 39 1 taaagaaaaa 0.789048 -159 tcttcgtgcgaataaactgaaaaacccgtcaccgaaaaagg 16 109 1 aaaagaaata 0.9693 -192 tcttggtccaaggaaaaagaaaaaataatcataagctttca 21 202 1 aaaagaaata 0.9693 -74 ttgactgattaaggaatagaaaaaggtttgatcaaacggcg 23 196 0 agaagaaata 0.908882 -51 tgccaaattaatataaacgaataaaacttaaaaatttttat 24 76 0 ataagaaata 0.923264 -46 ttccatttattaaatcgaaaaacaaattagtcgttaaag 25 9 1 aaaagaaata 0.9693 -145 tatgatagcaacataatggaaaaaatatatatttcctttaa 25 44 0 ataagaaaaa 0.904279 -110 cgattcggcgatgaaaacgcagaacattttaatctcgtagt 27 97 1 aaaagaaata 0.9693 -204 * *** * * ** * * Masking position 13 Map Score: 19.015 Number of sites scoring better than the average of aligned sites = 61 Number in coding regions = 47 Number in noncoding regions = 14 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 2 aagctcaagaattaaggaaaagtaatgaggagtgg 4 168 1 attagaagaa 0.653833 -133 tgaggagtgggttgctaaagcgaaattggttgcaa 4 193 1 gttcaaagaa 0.967176 -108 agcgaaattggttgcaaaaaagaaaactaaaaatt 4 211 1 gttcaaagaa 0.967176 -90 aaagaaaattgttaattaaagcggagaaaacttaa 4 249 0 gttataacga 0.394461 -52 ccaactccaagttcataaaccgcaaaccgttgatc 6 271 1 gttaaaagaa 0.910585 -30 tggttaattagtttagaaatgccaa 10 1 0 gttaaaacaa 0.837664 -39 gaaaaaagagcttacaaaagtgtaagcatggttaa 12 39 0 cttcaaagaa 0.758077 -25 ctactaatttgtttcctaacggtaatgtttgtaat 13 62 0 gttctaagaa 0.898732 -212 gacaaaaccatttcaaaacagaaattaagttgtt 14 10 1 attcaaagaa 0.9376 -188 taagttgtttgtttcgaaatcgtaaaaagtaataa 14 36 1 gttcaaagaa 0.967176 -162 ggcgattgggatttggaaagcccaagttatggccc 16 148 0 attgaaacaa 0.740311 -153 ttatattttcatttctaaatacggatagataaaac 17 11 0 attcaaacga 0.761401 -46 ttgtaattgagttagttaattgaaata 18 37 1 gttgtaagaa 0.768683 -17 tcatataagaatttgcaaacccaaaccgtcacaat 21 248 1 attgaaacaa 0.740311 -28 ggtgaagctggtttcggaattctaacatcgtttat 22 12 0 gttcgaacaa 0.844486 -82 tttgttcagggttacgaaaatcgaacctcgaaaaa 23 27 1 gttcaaacaa 0.937226 -220 aacttgactgattaaggaatagaaaaaggtttgat 23 205 0 attagaagaa 0.653833 -42 ttgtttttcgatttaataaatggaa 25 1 0 attataagaa 0.609997 -153 ggtccactttgttaccaaatcgacaaaagacgttt 25 105 0 gttcaaagca 0.778156 -49 cagcaattagattggtaaagtgtgatacgtttcaa 27 30 1 attgaaagga 0.702222 -271 ttgtcacgaaatttcaaaaaggcgaggtcaaaatt 27 199 0 attcaaagga 0.862975 -102 *** * *** * ** Masking position 3 Map Score: 18.3779 Number of sites scoring better than the average of aligned sites = 113 Number in coding regions = 92 Number in noncoding regions = 21 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 3 ctattgaaaaaatttcaatttttgagcaat 3 57 0 aatttcaatt 0.891772 -61 tttaattaacaattttcttttatataaata 4 264 1 aattttcttt 0.897394 -37 caactgggtcaattttaatttgtaagcgct 7 274 0 aattttaatt 0.884043 -27 ttgattataaaactttctttaaggcc 12 7 0 aactttcttt 0.701314 -57 tcgtaatcaaattttaattgtgtgtaatt 13 10 1 aattttaatt 0.884043 -264 ctgtaacagtaattctcattccatgcaatg 16 266 1 aattctcatt 0.697265 -35 ttttgatttatattttcatttctaaatacg 17 23 0 tattttcatt 0.820343 -34 tatttcaattaactaactca 18 44 0 tatttcaatt 0.700434 -10 gtaaattaacaattttctttgaatgattgt 23 65 0 aattttcttt 0.897394 -182 gggtattagtaactttaatttgttgaagtt 23 147 0 aactttaatt 0.6827 -100 aaaacttaaaaatttttattcggagattaa 24 65 0 aatttttatt 0.624667 -57 aaaaaatatatatttcctttaacgactaat 25 36 0 tatttccttt 0.718404 -118 ccgtttgttaaatttcaattacggta 25 138 1 aatttcaatt 0.891772 -16 tgtttttgcgaatttccattcgacaagact 27 234 1 aatttccatt 0.948401 -67 ataacgaacaaatttcctttccctttcgc 27 282 1 aatttccttt 0.90465 -19 ********** Masking position 2 Map Score: 11.2004 Number of sites scoring better than the average of aligned sites = 71 Number in coding regions = 43 Number in noncoding regions = 28 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548 Motif number 4 gctttattagagttggactcagaatgatatacca 4 17 1 attgctagaa 0.725481 -284 gaacttattaagttgatcaaagaaagaaaagctc 4 140 1 attacaagaa 0.784151 -161 gctaaagcgaaattggttgcaaaaaagaaaacta 4 206 1 attgtgaaaa 0.647593 -95 ggtatccacgattttgacgaaaacttaaacgaac 6 12 1 attgcgaaac 0.954055 -289 taactgatctaattcgccaaagaaactacgttct 6 140 0 attgcaagaa 0.943707 -161 gaattagatcagttagagaaagaacaatcaattc 6 159 1 attggaagaa 0.802154 -142 tacagttaatattttggcggagactgtgggattc 7 47 1 attgcgagac 0.948832 -254 gcactaattaaagggagaca 9 2 0 attaggagac 0.492865 -19 cgtttcgacgaatttgacagaaacgttcgaacaa 14 149 1 attgcaaaac 0.928131 -49 atagaatttaaggaaaaaaatgcttttt 18 5 1 attaggaaaa 0.612727 -49 ggtgagcctcagtttgtcgtaaaatcagcgattt 21 63 0 attgcgaaaa 0.967937 -213 aaaattgttaatttacccagaaaatttcactgtg 23 79 1 attccaaaaa 0.646947 -168 ttttttcatcattggggcgaaaaaccgctagaat 23 115 0 atggcgaaaa 0.782309 -132 ccaagaaaattcatcagaaaaatcccatctt 24 8 1 attacaaaaa 0.802695 -114 cggagattaaattttggcaaaaacctttgattaa 24 41 0 attgcaaaac 0.928126 -81 cgtttatattaatttggcagaaaatagacttata 24 98 1 attgcaaaaa 0.949427 -24 tcgaaaaacaaattagtcgttaaaggaaatatat 25 25 1 attgcgtaaa 0.708003 -129 * ** * ** **** Masking position 3 Map Score: 10.5236 Number of sites scoring better than the average of aligned sites = 95 Number in coding regions = 80 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 5 ttgagcaataaaagaaaccaaataacgtccaa 3 34 0 aaagaaacaa 0.767213 -84 tgagttttataaggaaaaagcacaagcaaaaa 4 103 1 aaggaaaaca 0.830269 -198 taagttgatcaaagaaagaaaagctcaagaat 4 148 1 aaagaaagaa 0.767213 -153 ctcaagaattaaggaaaagtaatgaggagtgg 4 171 1 aaggaaaaaa 0.971043 -130 tggttgcaaaaaagaaaactaaaaattaaatt 4 219 1 aaagaaaaaa 0.954329 -82 aaataggatcaaagataaaaaa 4 289 1 aaagataaaa 0.796796 -12 tagaaccaacaagggaaacaataacagttccc 6 91 1 aagggaaaat 0.740169 -210 acggaaacaaaaagataaagaaggcgtggtac 11 39 0 aaagataaaa 0.796796 -78 tcatcacgaaaaagaataaaatcccaatcaaa 13 225 1 aaagaataat 0.641545 -49 aaagtaataaaaagaatactaaaaataaggcg 14 61 1 aaagaataaa 0.85946 -137 atagaatttaaggaaaaaaatgctttttgta 18 10 1 aaggaaaaat 0.907527 -44 ctcttggtccaaggaaaaagaaaaaataatca 21 201 1 aaggaaaaaa 0.971043 -75 ttgactgattaaggaatagaaaaaggtttgat 23 205 0 aaggaataaa 0.907527 -42 gcgaaagggaaaggaaatttgttcgt 27 285 0 aagggaaaaa 0.906835 -16 ******** ** Masking position 2 Map Score: 9.01481 Number of sites scoring better than the average of aligned sites = 92 Number in coding regions = 83 Number in noncoding regions = 9 Number of orfs with sites within 600 bp upstream = 6 Fraction of orfs with sites within 600 bp upstream = 0.000963701 Motif number 6 tgtagcaaactttacaaagcccattagca 5 9 1 actttcaaag 0.938266 -84 cccttaaaccacttgggtaagtctccgtggc 7 124 1 acttggtaag 0.969653 -177 cccttcagccacttgggtaagtatccccttt 7 216 1 acttggtaag 0.969653 -85 gaaaattttaacttttcaaagctttaattcc 8 44 0 actttcaaag 0.938266 -45 ccatgcttacacttttgtaagctcttttttc 12 43 1 actttgtaag 0.967205 -21 gaccacatgaactttgttaaggggttgacgt 16 15 1 actttttaag 0.792763 -286 gatcaaacaaacttgtcaaagtcgatcgtag 16 192 1 acttgcaaag 0.942741 -109 acaatcaccaagttttgtaagatgttttttt 21 27 0 agtttgtaag 0.887465 -249 tgaccaatgtagtttagaaagtccattggtc 21 147 1 agtttgaaag 0.887465 -129 tcttatatgaacttgtgaaagcttatgatta 21 227 0 acttggaaag 0.969652 -49 ***** ***** Masking position 4 Map Score: 11.6229 Number of sites scoring better than the average of aligned sites = 12 Number in coding regions = 8 Number in noncoding regions = 4 Number of orfs with sites within 600 bp upstream = 2 Fraction of orfs with sites within 600 bp upstream = 0.000321234 Motif number 7 gttttataaggaaaaagcacaagcaaaaat 4 106 1 gaaaaagcac 0.939461 -195 actaacagcgacaaaagggccgcatgctaa 5 34 0 acaaaagggc 0.847023 -59 aaataacagtaaaaagccactaacagcgac 5 52 0 aaaaagccac 0.82955 -41 tcgtgtacaaaaaagggctaaaaataac 5 75 0 aaaaaagggc 0.941094 -18 tgtatcaattaaaaaagcacaccttttggg 7 21 0 aaaaaagcac 0.920405 -280 gaaaaaagagcttacaaaagt 12 53 0 aaaaaagagc 0.674509 -11 acgattactgtaaaagggacagttacttgt 16 61 1 taaaagggac 0.701981 -240 acccgtcaccgaaaaagggccataacttgg 16 132 1 gaaaaagggc 0.955436 -169 aatatttagcgcaaagggacatcggtagac 21 104 1 gcaaagggac 0.840686 -172 ttactgatgcgaaaagccacataggtgaag 22 40 0 gaaaagccac 0.867219 -54 tcgaacctcgaaaaaacgacaatcattcaa 23 47 1 aaaaaacgac 0.875866 -200 tcattggggcgaaaaaccgctagaataaca 23 111 0 gaaaaaccgc 0.901928 -136 ********** Masking position 5 Map Score: 6.69362 Number of sites scoring better than the average of aligned sites = 86 Number in coding regions = 66 Number in noncoding regions = 20 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 8 ttggcttttgaccacaccatatctaccata 6 209 0 accacaccat 0.957613 -92 caattaaaaaagcacaccttttggggatgt 7 16 0 agcacacctt 0.975332 -285 aaaactaagtaccacgccttctttatcttt 11 31 1 accacgcctt 0.97218 -86 cagtttaaggggcacatcttcgtgcgaata 16 93 1 ggcacatctt 0.775332 -208 ttaaccacaccattattgcgatt 20 43 0 accacaccat 0.957613 -13 gacaaactgaggctcacctttggctaatat 21 79 1 ggctcacctt 0.920472 -197 cgaaattttgacctcgcctttttgaaattt 27 196 1 acctcgcctt 0.938281 -105 ********** Masking position 10 Map Score: 3.16271 Number of sites scoring better than the average of aligned sites = 17 Number in coding regions = 12 Number in noncoding regions = 5 Number of orfs with sites within 600 bp upstream = 5 Fraction of orfs with sites within 600 bp upstream = 0.000803084 Motif number 9 ttattaattattcatttatatttt 2 24 1 ttctttattt 0.944924 -14 tattattgtattgatttaattt 3 1 0 ttgtttaatt 0.829183 -117 acttaataagttcattgatttttgcttgtgct 4 121 0 ttcttgattt 0.746533 -180 cggagaaaacttaatttaatttttagttttct 4 231 0 ttatttaatt 0.549909 -70 attaacaattttcttttatataaataggatca 4 268 1 ttctttatta 0.793561 -33 gcaaactttgttcgtttaagttttcgtcaaaa 6 23 0 ttctttaatt 0.925721 -278 ggttgacgttttcctttattttcgacgattac 16 37 1 ttctttattt 0.944924 -264 aaatacccttttgatttatattttcatttcta 17 29 0 ttgtttattt 0.869835 -28 tatttcaattaactaactcaattac 18 39 0 ttcattaata 0.498183 -15 ttaagttttattcgtttatattaatttggcag 24 86 1 ttctttattt 0.944924 -36 tatatattttttccattatgttgctatcatat 25 54 1 ttcattattt 0.85915 -100 tattttaaatttggattaaattgaa 26 11 1 ttgattaatt 0.633138 -15 *** ***** ** Masking position 8 Map Score: 6.42932 Number of sites scoring better than the average of aligned sites = 60 Number in coding regions = 48 Number in noncoding regions = 12 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 10 taagttttctccgctttaattaacaatttt 4 250 1 ccgctttaat 0.745346 -51 ccgtaacattaccctagaaccaacaaggga 6 77 1 accctagaac 0.759112 -224 aataacagttcccctagaacgtaacattgt 6 110 1 cccctagaac 0.953391 -191 cccacagtctccgccaaaatattaactgta 7 47 0 ccgccaaaat 0.811461 -254 tcgagagcgcccccttaaaccacttgggta 7 113 1 ccccttaaac 0.938743 -188 ttccgtattaccccctaaaggtaacgcgga 11 65 1 ccccctaaag 0.798127 -52 accaagatgaccgcctgaacgaagcgaaag 13 117 1 ccgcctgaac 0.950023 -157 gaaaacgtcaaccccttaacaaagttcatg 16 20 0 accccttaac 0.708726 -281 cgaagatgtgccccttaaactgaaacaagt 16 85 0 ccccttaaac 0.938743 -216 gggcgaaaaaccgctagaataacacagtga 23 105 0 ccgctagaat 0.835717 -142 gatggtccagcccccataataaattcacat 27 163 1 cccccataat 0.850119 -138 ********** Masking position 8 Map Score: 5.96779 Number of sites scoring better than the average of aligned sites = 62 Number in coding regions = 51 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 11 Fraction of orfs with sites within 600 bp upstream = 0.00176678 Motif number 11 ttggttctagggtaatgttacgggttttggg 6 69 0 ggtatgttac 0.867792 -232 cggagactgtgggattcgaacccacgcatgc 7 64 1 gggatcgaac 0.959958 -237 gtatccgccacggagacttacccaagtggtt 7 130 0 cggaacttac 0.856491 -171 cggatactgagggattcgaaccctcgcatgg 7 154 1 gggatcgaac 0.959958 -147 ttatagaaaggggatacttacccaagtggct 7 222 0 gggaacttac 0.9571 -79 tactgtaaaagggacagttacttgtttcagt 16 66 1 gggaagttac 0.937474 -235 actaattttgcgtactgtaacagtaattctc 16 252 1 cgtatgtaac 0.545421 -49 acaaaacttggtgattgttacaaaaatcgct 21 40 1 gtgatgttac 0.744347 -236 caagagtccagggagtcgtacgattataaga 21 176 0 gggatcgtac 0.972289 -100 agctggtttcggaattctaacatcgtttatt 22 11 0 ggaatctaac 0.789639 -83 **** ****** Masking position 4 Map Score: 2.94006 Number of sites scoring better than the average of aligned sites = 39 Number in coding regions = 25 Number in noncoding regions = 14 Number of orfs with sites within 600 bp upstream = 8 Fraction of orfs with sites within 600 bp upstream = 0.00128493 Motif number 12 gtctttaataaaaacgttatcgtgtttgc 3 99 0 aaaaacgtta 0.635212 -19 tcaaattcgtcgaaacgtcaagaaatgtaa 14 136 0 cgaaacgtca 0.943938 -62 gaaaataaaggaaaacgtcaaccccttaac 16 30 0 gaaaacgtca 0.899785 -271 ttgaattcaccaaaacttcagtttgactaa 16 227 1 caaaacttca 0.917005 -74 catgcaatgtcgaaacttcacgtt 16 287 1 cgaaacttca 0.826109 -14 tttgcaaacccaaaccgtcacaatcgc 21 259 1 caaaccgtca 0.912287 -17 cgaacctcgaaaaaacgacaatcattcaaa 23 48 1 aaaaacgaca 0.847104 -199 ccaatgatgaaaaaacttcaacaaattaaa 23 134 1 aaaaacttca 0.849026 -113 cgaaaatcgtcagtgttaactt 23 235 0 aaaatcgtca 0.862982 -12 actttgttaccaaatcgacaaaagacgttt 25 105 0 caaatcgaca 0.774765 -49 ********** Masking position 4 Map Score: 4.6857 Number of sites scoring better than the average of aligned sites = 34 Number in coding regions = 30 Number in noncoding regions = 4 Number of orfs with sites within 600 bp upstream = 4 Fraction of orfs with sites within 600 bp upstream = 0.000642467 Motif number 13 aataaaaacgttatcgtgtttgctactatta 3 91 0 ttatctgttt 0.416626 -27 ttttgtcgctgttagtggctttttactgtta 5 48 1 gttagggctt 0.81907 -45 ctagggtaatgttacgggttttgggcatgag 6 63 0 gttacggttt 0.952731 -238 tagatcaacggtttgcggtttatgaacttgg 6 277 0 gtttgggttt 0.905438 -24 ctcgaaaagcgttaggtgtttttgcatgcgt 7 87 0 gttagtgttt 0.926681 -214 cttaacagttttaagaggtttaatgctacaa 13 188 1 ttaagggttt 0.802654 -86 aaaacagaaattaagttgtttgtttcgaaat 14 25 1 ttaagtgttt 0.681369 -173 tcaacgtttcgtttcaggttt 14 187 1 gtttcggttt 0.889236 -11 aaaagggacagttacttgtttcagtttaagg 16 72 1 gttactgttt 0.913772 -229 ccctttttcggtgacgggtttttcagtttat 16 120 0 gtgacggttt 0.861146 -181 accaagttttgtaagatgtttttttgctatg 21 21 0 gtaagtgttt 0.89619 -255 ***** ***** Masking position 2 Map Score: 4.34491 Number of sites scoring better than the average of aligned sites = 83 Number in coding regions = 71 Number in noncoding regions = 12 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 14 gccgcatgctaatgggctttgtaaagtttgc 5 15 0 aatggctttg 0.949334 -78 ttgcgaattgattgttctttctctaactgat 6 166 0 attgtctttc 0.852066 -135 aaggtttagaactggactttcgcttcgttca 13 132 0 actggctttc 0.963028 -142 agggccataacttgggctttccaaatcccaa 16 147 1 cttggctttc 0.931803 -154 gcaacaggcgattgggatttggaaagcccaa 16 158 0 attggatttg 0.708491 -143 ttataagaccaatggactttctaaactacat 21 153 0 aatggctttc 0.977976 -123 gttacaaatcaatggtctttcagaaaacgat 27 70 1 aatggctttc 0.977976 -231 ***** ***** Masking position 8 Map Score: 1.95069 Number of sites scoring better than the average of aligned sites = 7 Number in coding regions = 6 Number in noncoding regions = 1 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 tccacgattttgacgaaaacttaaacgaac 6 16 1 tgacgaaaac 0.868473 -285 gttaatattttggcggagactgtgggattc 7 51 1 tggcggagac 0.948311 -250 taagtctccgtggcggatactgagggattc 7 141 1 tggcggatac 0.925253 -160 actgttaaggcgccagaaaccaaaacgctt 13 167 0 cgccagaaac 0.858066 -107 tcgacgaatttgacagaaacgttcgaacaa 14 153 1 tgacagaaac 0.947918 -45 aacgacggaaacgccgagttac 15 13 0 cgacggaaac 0.942355 -12 gattaaattttggcaaaaacctttgattaa 24 41 0 tggcaaaaac 0.89581 -81 tatattaatttggcagaaaatagacttata 24 102 1 tggcagaaaa 0.807608 -20 ********** Masking position 7 Map Score: 1.93352 Number of sites scoring better than the average of aligned sites = 27 Number in coding regions = 22 Number in noncoding regions = 5 Number of orfs with sites within 600 bp upstream = 4 Fraction of orfs with sites within 600 bp upstream = 0.000642467