AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i099_Phosphate_Transport_1_mtub_reg_300.orf -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 phoY2 57 phoY2 #2 Rv0822c 165 hypothetical protein Rv0822c #3 Rv0823c 87 hypothetical protein Rv0823c #4 desA1 161 desA1 #5 Rv0825c 80 hypothetical protein Rv0825c #6 phoS2 271 phoS2 #7 pstB 215 pstB #8 pstC 59 pstC #9 phoY1 107 phoY1 #10 lpdA 202 lpdA Motif number 1 CTGCATTGTGCGGCGCCGACTCGTGGCGGT 2 68 1 CGGCGCCGAC 0.975577 -98 CACCTTCGCGCAGCACCGCCACGAGTCGGC 2 82 0 CAGCACCGCC 0.953775 -84 GACACGCAGCCAACACCGCGGGCGTCCGCC 2 119 1 CAACACCGCG 0.959582 -47 ACACCGCGGGCGTCCGCCACCTAGACTCTC 2 131 1 CGTCCGCCAC 0.558433 -35 CCTAGACTCTCGGAGGCCGGTAGGAC 2 150 1 CGGAGGCCGG 0.826716 -16 CGCTCTGCATCGTCGCCGGG 3 1 0 CGTCGCCGGG 0.991446 -87 GATGCAGAGCGCGCAGCGCGATGAGCAGGA 3 20 1 GCGCAGCGCG 0.94232 -68 CGCTCTGCATCGTCGCCGGGCTGGGTTGGA 3 59 0 CGTCGCCGGG 0.991446 -29 GATGCAGAGCGCGCAGCGCG 3 78 1 GCGCAGCGCG 0.94232 -10 TCACCCCACGCGGCCACCGGGGCCCGCCGA 4 24 1 CGGCCACCGG 0.962221 -138 AGGATGCTGGCATCGGCGGGCCCCGGTGGC 4 36 0 CATCGGCGGG 0.972201 -126 GTTGAGCTGCCAGCAGCGGGCAGGATGCTG 4 57 0 CAGCAGCGGG 0.980021 -105 CCGTTTCGGCCGACAGCCGGAAAAGAGGGC 6 14 0 CGACAGCCGG 0.970027 -258 TACACAGCAGGCACACCCCCAGGTTTCGGG 6 76 0 GCACACCCCC 0.56168 -196 GTGGCTGGTTCGACCGCGGGTCTCAGGGGA 6 127 0 CGACCGCGGG 0.991455 -145 GCGGTCGAACCAGCCACGTGTCCATCATCA 6 140 1 CAGCCACGTG 0.714791 -132 CATCAGGGGTCAACCCCGGCCAAGGGCGAC 6 165 1 CAACCCCGGC 0.932412 -107 CCCCGGCCAAGGGCGACGGCACGCCAAGTT 6 178 1 GGGCGACGGC 0.938686 -94 GGATCCGCCACCACGACCCCCTCGAGAGGA 7 16 0 CCACGACCCC 0.885393 -200 GGTGGCTCGGCGACCACCGGTGGCGAGTGG 7 44 0 CGACCACCGG 0.929556 -172 GCTCGAATACCGACCCCGGGTCGGTGGCTC 7 66 0 CGACCCCGGG 0.990895 -150 CGATGCACAACGGTGACGGCTCGAATACCG 7 84 0 CGGTGACGGC 0.825552 -132 CCCTCAGTATCAGCGGCCCCTCCTGAACGC 7 140 0 CAGCGGCCCC 0.963547 -76 TACTGAGGGTCGACGGCGCGCTTTGTCCAA 7 161 1 CGACGGCGCG 0.996678 -55 CGGCGCAGGGTACTACATGC 7 206 0 CGGCGCAGGG 0.920047 -10 CCTCGTTGACCACCACGCGACAGCAACCT 8 10 1 CCACCACGCG 0.94852 -50 CAAAGCAGCCCGATGGCCCGACGGAGGTTG 8 34 0 CGATGGCCCG 0.862055 -26 TCGACCATGGCGGCACCGCGCGACATACCC 9 25 0 CGGCACCGCG 0.993892 -83 TGCCGCGGATCCACACCGCCATCATCGACC 9 49 0 CCACACCGCC 0.95002 -59 CGGTGTGGATCCGCGGCAGCACCACACGAC 9 61 1 CCGCGGCAGC 0.789307 -47 AAAGCTTAGACGGCGGGGGCTCGGGTGGTA 10 16 1 CGGCGGGGGC 0.890908 -187 ATGACCCGCACCGCAGCGCGGCGCGATGGG 10 46 0 CCGCAGCGCG 0.988711 -157 CACAGCTTGACGATGACCCGCACCGCAGCG 10 58 0 CGATGACCCG 0.663108 -145 GCACGCCGCGCAGCGGCGTGAGGAGGAGCC 10 99 0 CAGCGGCGTG 0.953724 -104 CGGCGACGATGCACGCCGCGCAGCGGCGTG 10 109 0 GCACGCCGCG 0.963654 -94 CGGCGTGCATCGTCGCCGAGCTGTGTTGGA 10 121 1 CGTCGCCGAG 0.949858 -82 GCACGCCGCGCAGCGGCGTGAGGAGGAGCC 10 157 0 CAGCGGCGTG 0.953724 -46 CGGCGACGATGCACGCCGCGCAGCGGCGTG 10 167 0 GCACGCCGCG 0.963654 -36 CGGCGTGCATCGTCGCCGAGCTAGGTTATG 10 179 1 CGTCGCCGAG 0.949858 -24 ********** Masking position 7 Map Score: 77.5456 Number of sites scoring better than the average of aligned sites = 80502 Number in coding regions = 75807 Number in noncoding regions = 4695 Number of orfs with sites within 600 bp upstream = 1477 Fraction of orfs with sites within 600 bp upstream = 0.237231 Motif number 2 TTTCCAAGGTCGGGAACGTAGGCTTTAGCAC 1 37 1 CGGAAGTAGC 0.520175 -21 CGCAGCACCGCCACGAGTCGGCGCCGCACAATG 2 71 0 CCCGATCGGG 0.524091 -95 GGCGGTGCTGCGCGAAGGTGCGCGTAGGACACG 2 92 1 CGGAAGTGCC 0.614222 -74 GAGTCTAGGTGGCGGACGCCCGCGGTGTTGGCT 2 126 0 GGGGAGCCCC 0.925203 -40 CCCGGCGACGATGCAGAGCGCGCAGCGC 3 6 1 CGCGAGCAGG 0.974691 -82 AGCGCGATGAGCAGGAGGCGGGCAATCCAACCC 3 34 1 GCGGAGCGGC 0.964011 -54 CCCAGCCCGGCGACGATGCAGAGCGCGCAGCGC 3 64 1 CGCGAGCAGG 0.974691 -24 CCAGCAGCGGGCAGGATGCTGGCATCGGCGGGC 4 45 0 GCGGAGCTGC 0.931803 -117 TGTGACTGCTCCCGAAACCTGGGGGTGTGCCTG 6 66 1 CCGAACCTGG 0.527413 -206 GCGGGTCTCAGGGGAAGGATGTCCGTATGCCGT 6 109 0 GGGAAGATGC 0.443383 -163 TGAGACCCGCGGTCGAACCAGCCACGTGTCCAT 6 132 1 GGCGACCAGC 0.98168 -140 CATCATCAGGGGTCAACCCCGGCCAAGGGCGAC 6 162 1 GGCAACCCGC 0.870834 -110 GGTTAACGGTCGGCGAACTTGGCGTGCCGTCGC 6 190 0 CGCGACTTGC 0.826521 -82 AGTTCCTAACGGCCGACCAGCTGTTTTGCTCGC 6 246 0 GGCGACAGCG 0.814255 -26 GGATCCGCCACCACGACCCCCTCGAGAGGAGTT 7 13 0 CCCGACCCCC 0.901156 -203 GGGTCGTGGTGGCGGATCCACTCGCCACCGGTG 7 27 1 GGGGACCACC 0.98729 -189 CACCGGTGGTCGCCGAGCCACCGACCCGGGGTC 7 52 1 CGCGACCACG 0.944517 -164 CTAGCGTTCAGGAGGGGCCGCTGATACTGAGGG 7 137 1 GGGGGCCGCG 0.869822 -79 CAAAGCGCGCCGTCGACCCTCAGTATCAGCGGC 7 153 0 CGCGACCTCG 0.965863 -63 GATGCTCCTTGGACAAAGCGCGCCGTCGACCCT 7 166 0 GGCAAGCGCC 0.956214 -50 ATGGCCCGACGGAGGTTGCTGTCGCGTGGTGGT 8 19 0 GGGGTGCTGC 0.727921 -41 GCTCCGCAAAGCAGCCCGATGGCCCG 8 44 0 CCCAAGCAGC 0.777959 -16 CATCGACCATGGCGGCACCGCGCGACATACCCG 9 24 0 GGGGCCCGCC 0.591505 -84 GTGCCGCCATGGTCGATGATGGCGGTGTGGATC 9 39 1 GGCGAGATGC 0.826791 -69 GTGGTGCTGCCGCGGATCCACACCGCCATCATC 9 53 0 CGGGACCACC 0.987377 -55 CAGCACCACACGACGACTCAGGGTCAGAGAGGC 9 77 1 CGCGATCAGG 0.781522 -31 AAGCTTAGACGGCGGGGGCTCGGGTGGTACCCA 10 17 1 GGGGGGCTCG 0.764612 -186 CACAGCTTGACGATGACCCGCACCGCAGCGCGG 10 55 0 CGTGACCGCC 0.859402 -148 AGCGGCGTGAGGAGGAGCCGAGCAGTCAAGCAC 10 85 0 GGGGACCGAC 0.913897 -118 CACAGCTCGGCGACGATGCACGCCGCGCAGCGG 10 113 0 CGCGAGCACC 0.988165 -90 AGCGGCGTGAGGAGGAGCCGAGCAGTCCAACAC 10 143 0 GGGGACCGAC 0.913897 -60 CCTAGCTCGGCGACGATGCACGCCGCGCAGCGG 10 171 0 CGCGAGCACC 0.988165 -32 ** *** **** * Masking position 2 Map Score: 51.8877 Number of sites scoring better than the average of aligned sites = 43909 Number in coding regions = 41332 Number in noncoding regions = 2577 Number of orfs with sites within 600 bp upstream = 1172 Fraction of orfs with sites within 600 bp upstream = 0.188243 Motif number 3 CACGAGTCGGCGCCGCACAATGCAGCAAGGCCCACA 2 57 0 CCCGACACAC 0.919198 -109 CTACGCGCACCTTCGCGCAGCACCGCCACGAGTCGG 2 83 0 CTCGGCACCC 0.972538 -83 GCTCATCGCGCTGCGCGCTCTGCATCGTCGCCGGG 3 10 0 CGCGGCTCAC 0.997197 -78 GATGAGCAGGAGGCGGGCAATCCAACCCAGCCCGGC 3 39 1 AGCGGCACAC 0.990417 -49 CGCGCTGCGCGCTCTGCATCGTCGCCGGGC 3 68 0 CGCGGCTCAC 0.997197 -20 ATCCTGCCCGCTGCTGGCAGCTCAACATGCCGCGCG 4 61 1 CGCTGCACAC 0.977578 -101 GCTCAACATGCCGCGCGAAGCCCAAACTTGATGCTA 4 80 1 CGCGGAACAA 0.848376 -82 AATGAAGATTCAGCAGGCAAAACCACCA 5 3 0 CGCAGCACCC 0.988178 -78 CAGGAAGCTGCAGCAAGCTTGTTACCGTTTCGGCCG 6 32 0 CGCAGCTTAC 0.937795 -240 CGTGCATACACAGCAGGCACACCCCCAGGTTTCGGG 6 76 0 CGCAGCACCC 0.988178 -196 CCCCTGAGACCCGCGGTCGAACCAGCCACGTGTCCA 6 128 1 CGCGTCGCAC 0.917917 -144 GCTTCATTTGCTGCGAGCAAAACAGCTGGTCGGCCG 6 234 1 CGCGGCACAC 0.998789 -38 TGAGGGTCGACGGCGCGCTTTGTCCAAGGAGCATCC 7 164 1 CGCGGCTTCA 0.875846 -52 ACCATGGCGGCACCGCGCGACATACCCGCTTGGCGT 9 16 0 CCCGGCGTAC 0.957318 -92 CACCGCAGCGCGGCGCGATGGGTACCACCCGAGCCC 10 32 0 CGCGGATTAC 0.902885 -171 CGTGAGGAGGAGCCGAGCAGTCAAGCACAGCTTGAC 10 77 0 ACCGGCAAAC 0.667791 -126 CGCCGCTGCGCGGCGTGCATCGTCGCCGAGCTGTGT 10 111 1 CGCGGCATCC 0.994989 -92 CGTGAGGAGGAGCCGAGCAGTCCAACACAGCTCGGC 10 135 0 ACCGGCACAC 0.968273 -68 CGCCGCTGCGCGGCGTGCATCGTCGCCGAGCTAGGT 10 169 1 CGCGGCATCC 0.994989 -34 * *** *** ** * Masking position 4 Map Score: 48.5878 Number of sites scoring better than the average of aligned sites = 5940 Number in coding regions = 5613 Number in noncoding regions = 327 Number of orfs with sites within 600 bp upstream = 278 Fraction of orfs with sites within 600 bp upstream = 0.0446515 Motif number 4 AATGCCGTAAGCGTCGTGTCAATGCGG 1 3 0 GCGTGTCTGC 0.984067 -55 TACGATGTGGGCCTTGCTGCATTGTGCGGCGCCGA 2 52 1 GCGCTGCTGT 0.961975 -114 GTGCGGCGCCGACTCGTGGCGGTGCTGCGCGAAGG 2 75 1 GAGTGGCTGC 0.980977 -91 CCCGGCGACGATGCAGAGCGCGCAGCGCG 3 5 1 GCGATGCAGC 0.839383 -83 TCGTCGCCGGGCTGGGTTGGATTGCCCGCCTCCTG 3 45 0 GCGTTGGTGC 0.974443 -43 ACCCAGCCCGGCGACGATGCAGAGCGCGCAGCGCG 3 63 1 GCGATGCAGC 0.839383 -25 GCTTGCTGCAGCTTCCTGTGACTGCTCCCGAAACC 6 50 1 GCCTGTGTGC 0.959778 -222 GACTGCTCCCGAAACCTGGGGGTGTGCCTGCTGTG 6 69 1 GACTGGGTGT 0.731244 -203 CTGGGGGTGTGCCTGCTGTGTATGCACGGCATACG 6 84 1 GCCTGTGTGC 0.963851 -188 TTAACGGTCGGCGAACTTGGCGTGCCGTCGCCCTT 6 186 0 GCCTTGGTGC 0.984579 -86 CCTAACGGCCGACCAGCTGTTTTGCTCGCAGCAAA 6 240 0 GAGCTGTTGC 0.871204 -32 TCAATGATCAGACCTCTTTCGATGCACAACGGTGA 7 98 0 GACTTTCTGC 0.80756 -118 AGGCTACGCCAAGCGGGTATGTCGCGCGGTGC 9 8 1 GCGCGGGTGT 0.970839 -100 ACCCTGAGTCGTCGTGTGGTGCTGCCGCGGATCCA 9 66 0 GTGTGGTTGC 0.731224 -42 TACCCATCGCGCCGCGCTGCGGTGCGGGTCATCGT 10 44 1 GCGCTGCTGC 0.904132 -159 TCATCGTCAAGCTGTGCTTGACTGCTCGGCTCCTC 10 72 1 GCGCTTGTGC 0.917362 -131 TCGTCGCCGAGCTGTGTTGGACTGCTCGGCTCCTC 10 130 1 GCGTTGGTGC 0.974443 -73 CCATAACCTAGCTCGGCGACGATGCACGCCGCGCA 10 175 0 GCGCGACTGC 0.652 -28 ** ***** *** Masking position 14 Map Score: 34.6352 Number of sites scoring better than the average of aligned sites = 5739 Number in coding regions = 5271 Number in noncoding regions = 468 Number of orfs with sites within 600 bp upstream = 351 Fraction of orfs with sites within 600 bp upstream = 0.0563765 Motif number 5 CGGCGCCGCACAATGCAGCAAGGCCCACAT 2 56 0 CAATGCAGCA 0.597875 -110 TGCGCGTAGGACACGCAGCCAACACCGCGG 2 110 1 ACACGCAGCC 0.95609 -56 GTCCTACCGGCCTCCGAGAGTC 2 154 0 CCTACCGGCC 0.721207 -12 GCGGGCAATCCAACCCAGCCCGGCGACGAT 3 51 1 CAACCCAGCC 0.982431 -37 GGGGTTCACCCCACGCGGCCACCGGGGCCC 4 19 1 CCACGCGGCC 0.984414 -143 GCCGTGCATACACAGCAGGCACACCCCCAG 6 84 0 CACAGCAGGC 0.599726 -188 GACCCGCGGTCGAACCAGCCACGTGTCCAT 6 135 1 CGAACCAGCC 0.867201 -137 ATCAGGGGTCAACCCCGGCCAAGGGCGACG 6 166 1 AACCCCGGCC 0.65613 -106 TGGATCCGCCACCACGACCCCCTCGAGAGG 7 17 0 ACCACGACCC 0.256195 -199 GGTCGCCGAGCCACCGACCCGGGGTCGGTA 7 59 1 CCACCGACCC 0.893049 -157 CGCGCTTTGTCCAAGGAGCATCCCAAGGAG 7 177 1 CCAAGGAGCA 0.846501 -39 AAGGAGCATCCCAAGGAGCATGTAGTACCC 7 189 1 CCAAGGAGCA 0.846501 -27 GCTCCGCAAAGCAGCCCGATGGCCCG 8 44 0 CAAAGCAGCC 0.968345 -16 TGCCGCGGATCCACACCGCCATCATCGACC 9 49 0 CCACACCGCC 0.773692 -59 CGATGGGTACCACCCGAGCCCCCGCCGTCT 10 23 0 CACCCGAGCC 0.951561 -180 CGGGTGGTACCCATCGCGCCGCGCTGCGGT 10 37 1 CCATCGCGCC 0.694551 -166 CGATGACCCGCACCGCAGCGCGGCGCGATG 10 48 0 CACCGCAGCG 0.92483 -155 ACGATGCACGCCGCGCAGCGGCGTGAGGAG 10 104 0 CCGCGCAGCG 0.928651 -99 ACGATGCACGCCGCGCAGCGGCGTGAGGAG 10 162 0 CCGCGCAGCG 0.928651 -41 ********** Masking position 9 Map Score: 18.5993 Number of sites scoring better than the average of aligned sites = 20980 Number in coding regions = 19608 Number in noncoding regions = 1372 Number of orfs with sites within 600 bp upstream = 820 Fraction of orfs with sites within 600 bp upstream = 0.131706 Motif number 6 GACGCGATTTCGACAGGGTCTCGAT 2 6 0 CGACAGGGTC 0.808111 -160 CGCGCAGCACCGCCACGAGTCGGCGCCGCA 2 76 0 CGCCACGAGT 0.791891 -90 GAGCGCGCAGCGCGATGAGCAGGAGGCGGG 3 26 1 CGCGATGAGC 0.954659 -62 GGACGACTGGGGTTCACCCCACG 4 4 1 CGACTGGGGT 0.913714 -158 CCCCGGTGGCCGCGTGGGGTGAACCCCAGT 4 16 0 CGCGTGGGGT 0.987633 -146 ACGACCCCCTCGAGAGGAGTTGC 7 4 0 CGAGAGGAGT 0.975544 -212 CCACCGGTGGCGAGTGGATCCGCCACCACG 7 31 0 CGAGTGGATC 0.855955 -185 CCCTCCTGAACGCTAGGATTTCAATGATCA 7 123 0 CGCTAGGATT 0.740544 -93 AGGTTGCTGTCGCGTGGTGGTCAACGAGG 8 10 0 CGCGTGGTGG 0.95134 -50 GCGACATACCCGCTTGGCGTAGCCT 9 6 0 CGCTTGGCGT 0.810013 -102 GCGGGTATGTCGCGCGGTGCCGCCATGGTC 9 23 1 CGCGCGGTGC 0.921094 -85 CGCGCGGTGCCGCCATGGTCGATGATGGCG 9 33 1 CGCCATGGTC 0.64652 -75 CCTGAGTCGTCGTGTGGTGCTGCCGCGGAT 9 69 0 CGTGTGGTGC 0.89333 -39 ACTCAGGGTCAGAGAGGCGTGACACC 9 92 1 AGAGAGGCGT 0.491602 -16 CGCAGCGCGGCGCGATGGGTACCACCCGAG 10 35 0 CGCGATGGGT 0.952536 -168 CGCGCAGCGGCGTGAGGAGGAGCCGAGCAG 10 93 0 CGTGAGGAGG 0.939663 -110 CGCGCAGCGGCGTGAGGAGGAGCCGAGCAG 10 151 0 CGTGAGGAGG 0.939663 -52 ********** Masking position 7 Map Score: 18.2618 Number of sites scoring better than the average of aligned sites = 6160 Number in coding regions = 5516 Number in noncoding regions = 644 Number of orfs with sites within 600 bp upstream = 473 Fraction of orfs with sites within 600 bp upstream = 0.0759717 Motif number 7 GAAAATGCCGTAAGCGTCGTGTCAATGCGG 1 11 0 TAAGCGTCGT 0.585484 -47 TGCAGCAAGGCCCACATCGTACTGATTTAT 2 43 0 CCCACATCGT 0.828032 -123 TGTGGGCCTTGCTGCATTGTGCGGCGCCGA 2 57 1 GCTGCATTGT 0.647679 -109 CGCTGCGCGCTCTGCATCGTCGCCGGG 3 8 0 TCTGCATCGT 0.956744 -80 GGTTGGATTGCCCGCCTCCTGCTCATCGCG 3 36 0 CCCGCCTCCT 0.83998 -52 CGCTGCGCGCTCTGCATCGTCGCCGGGCTG 3 66 0 TCTGCATCGT 0.956744 -22 GTGGGGTGAACCCCAGTCGTCC 4 3 0 CCCCAGTCGT 0.614283 -159 CCCGCCGATGCCAGCATCCTGCCCGCTGCT 4 46 1 CCAGCATCCT 0.93671 -116 TGTTGAGCTGCCAGCAGCGGGCAGGATGCT 4 58 0 CCAGCAGCGG 0.910103 -104 CGCGGTCGAACCAGCCACGTGTCCATCATC 6 139 1 CCAGCCACGT 0.814406 -133 GCGACAGCAACCTCCGTCGGGCCATCGGGC 8 27 1 CCTCCGTCGG 0.848042 -33 CCTCTCTGACCCTGAGTCGTCGTGTGGTGC 9 79 0 CCTGAGTCGT 0.930899 -29 TGCACGCCGCGCAGCGGCGTGAGGAGGAGC 10 100 0 GCAGCGGCGT 0.939122 -103 CGCTGCGCGGCGTGCATCGTCGCCGAGCTG 10 114 1 CGTGCATCGT 0.948575 -89 TGCACGCCGCGCAGCGGCGTGAGGAGGAGC 10 158 0 GCAGCGGCGT 0.939122 -45 CGCTGCGCGGCGTGCATCGTCGCCGAGCTA 10 172 1 CGTGCATCGT 0.948575 -31 ********** Masking position 8 Map Score: 15.5612 Number of sites scoring better than the average of aligned sites = 8498 Number in coding regions = 7836 Number in noncoding regions = 662 Number of orfs with sites within 600 bp upstream = 513 Fraction of orfs with sites within 600 bp upstream = 0.0823964 Motif number 8 CGACTCGTGGCGGTGCTGCGCGAAGGTGCG 2 84 1 CGGTGCTGCG 0.776172 -82 CGGTGCTGCGCGAAGGTGCGCGTAGGACAC 2 94 1 CGAAGGTGCG 0.454001 -72 GTCTAGGTGGCGGACGCCCGCGGTGTTGGC 2 127 0 CGGACGCCCG 0.544204 -39 CCTAGACTCTCGGAGGCCGGTAGGAC 2 150 1 CGGAGGCCGG 0.839598 -16 CGCGATGAGCAGGAGGCGGGCAATCCAACC 3 36 1 AGGAGGCGGG 0.608745 -52 CACGCGGCCACCGGGGCCCGCCGATGCCAG 4 30 1 CCGGGGCCCG 0.629024 -132 GAGCTGCCAGCAGCGGGCAGGATGCTGGCA 4 54 0 CAGCGGGCAG 0.331293 -108 GCAGCTCAACATGCCGCGCGAAGCCCAAAC 4 77 1 ATGCCGCGCG 0.790327 -85 ATATCTGTGTCTCTCGGTAGCATCAAGTTT 4 103 0 CTCTCGGTAG 0.051521 -59 TCTTTTCCGGCTGTCGGCCGAAACGGTAAC 6 18 1 CTGTCGGCCG 0.878931 -254 CATCCTTCCCCTGAGACCCGCGGTCGAACC 6 121 1 CTGAGACCCG 0.651088 -151 ACTTGGCGTGCCGTCGCCCTTGGCCGGGGT 6 177 0 CCGTCGCCCT 0.387768 -95 ACTAGGTTAACGGTCGGCGAACTTGGCGTG 6 197 0 CGGTCGGCGA 0.272043 -75 GCAAAACAGCTGGTCGGCCGTTAGGAACTG 6 250 1 TGGTCGGCCG 0.66849 -22 CGGCGACCACCGGTGGCGAGTGGATCCGCC 7 37 0 CGGTGGCGAG 0.944472 -179 GACCCCGGGTCGGTGGCTCGGCGACCACCG 7 55 0 CGGTGGCTCG 0.970669 -161 GCCGCTGATACTGAGGGTCGACGGCGCGCT 7 153 1 CTGAGGGTCG 0.872416 -63 ACGGAGGTTGCTGTCGCGTGGTGGTCAACG 8 14 0 CTGTCGCGTG 0.704726 -46 CAAAGCAGCCCGATGGCCCGACGGAGGTTG 8 34 0 CGATGGCCCG 0.894271 -26 CCAAGCGGGTATGTCGCGCGGTGCCGCCAT 9 19 1 ATGTCGCGCG 0.836993 -89 GCTTAGACGGCGGGGGCTCGGGTGGTACCC 10 19 1 CGGGGGCTCG 0.753131 -184 TCGCGCCGCGCTGCGGTGCGGGTCATCGTC 10 50 1 CTGCGGTGCG 0.878963 -153 CCTCACGCCGCTGCGCGGCGTGCATCGTCG 10 106 1 CTGCGCGGCG 0.807049 -97 CCTCACGCCGCTGCGCGGCGTGCATCGTCG 10 164 1 CTGCGCGGCG 0.807049 -39 ********** Masking position 10 Map Score: 20.2399 Number of sites scoring better than the average of aligned sites = 33967 Number in coding regions = 31501 Number in noncoding regions = 2466 Number of orfs with sites within 600 bp upstream = 1222 Fraction of orfs with sites within 600 bp upstream = 0.196274 Motif number 9 GGCGGACGCCCGCGGTGTTGGCTGCGTGTC 2 119 0 CGCGGTGTTG 0.960298 -47 ATCGTCGCCGGGCTGGGTTGGATTGCCCGC 3 51 0 GGCTGGGTTG 0.86268 -37 CAGTCAATATATCTGTGTCTCTCGGTAGCA 4 111 0 ATCTGTGTCT 0.878406 -51 GCCTCCAGTTATCTGTGTCTAATGGTTGCA 4 139 0 ATCTGTGTCT 0.878406 -23 GGGGTGTGCCTGCTGTGTATGCACGGCATA 6 87 1 TGCTGTGTAT 0.694937 -185 ACGGCCGACCAGCTGTTTTGCTCGCAGCAA 6 241 0 AGCTGTTTTG 0.878184 -31 GGGTATGTCGCGCGGTGCCGCCATGGTCGA 9 25 1 CGCGGTGCCG 0.920563 -83 GTCATCGTCAAGCTGTGCTTGACTGCTCGG 10 71 1 AGCTGTGCTT 0.948174 -132 ATCGTCGCCGAGCTGTGTTGGACTGCTCGG 10 129 1 AGCTGTGTTG 0.986584 -74 ********** Masking position 3 Map Score: 3.54743 Number of sites scoring better than the average of aligned sites = 2088 Number in coding regions = 1928 Number in noncoding regions = 160 Number of orfs with sites within 600 bp upstream = 167 Fraction of orfs with sites within 600 bp upstream = 0.026823 Motif number 10 ********** No masking Map Score: -4.30999e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 11 ********** No masking Map Score: -4.30999e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ********** No masking Map Score: -4.30999e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0