AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i210_trans4_mtub_reg_100.orf -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 gpsI 300 gpsI #2 rpsO 156 rpsO #3 ribF 210 ribF #4 Rv2795c 144 hypothetical protein Rv2795c #5 infB 85 infB #6 Rv2840c 126 hypothetical protein Rv2840c #7 Rv2842c 194 hypothetical protein Rv2842c Motif number 1 TAGAGTGAGAACGTTCTGGGCCGGTTCGGC 1 11 1 ACGTTCTGGG 0.538685 -290 CGTTCTGGGCCGGTTCGGCCCAGCAAATGG 1 22 1 CGGTTCGGCC 0.977688 -279 GCAAATGGTGCGGTACGCGCAGAACCGCGT 1 44 1 CGGTACGCGC 0.822226 -257 GCGCAGAACCGCGTGTGCCGTTCCAGCGAG 1 60 1 GCGTGTGCCG 0.78787 -241 TACAGGCCGGGGGTGCTCCCTTGGATATGC 1 97 0 GGGTGCTCCC 0.69261 -204 GCCACTACCGAGGACCGCCCGATACAGGCC 1 119 0 AGGACCGCCC 0.916616 -182 CCTCGGTAGTGGCTGCCGGGCTCTCCGGAT 1 136 1 GGCTGCCGGG 0.898669 -165 ATCGAAGCGGCCGACCTGCCCCAGATCCGG 1 160 0 CCGACCTGCC 0.863237 -141 GTCTGAATGCGGCTACGGCCATCGATCGAA 1 184 0 GGCTACGGCC 0.905911 -117 GAAGCTCTCGGGGTTCGGCGAACCCGCTGG 1 226 1 GGGTTCGGCG 0.976793 -75 GACGTCCGTGCGGCCTCTCTGGATT 1 286 0 CCGTGCGGCC 0.942371 -15 CGCCGCAGGTGCCAGCCGGGGGTCACGACC 2 21 0 GCCAGCCGGG 0.668937 -136 CCCGGCTGGCACCTGCGGCGTTTGTGTTTG 2 31 1 ACCTGCGGCG 0.958487 -126 CGACATCGGTGCGTGCTGCGGTTCGCGGTG 2 89 1 GCGTGCTGCG 0.922779 -68 ATGGATATCAGGGCACGGCCACCGCGAACC 2 108 0 GGGCACGGCC 0.585265 -49 CCCAGAGAATTGGCGCGCGCATACCGAACG 3 65 0 TGGCGCGCGC 0.492472 -146 CCAATTCTCTGGGACCGGCCACGGTGCCGC 3 82 1 GGGACCGGCC 0.960384 -129 GGACCGGCCACGGTGCCGCCGGCGTTCCCG 3 93 1 CGGTGCCGCC 0.970641 -118 GGTGCCGCCGGCGTTCCCGGACGTGCTGCG 3 104 1 GCGTTCCCGG 0.719993 -107 GCGTTCCCGGACGTGCTGCGCCAGGTGTCC 3 114 1 ACGTGCTGCG 0.930935 -97 ACACCATGCACGCGGCCGCCGGACACCTGG 3 134 0 CGCGGCCGCC 0.48309 -77 GTGGGCTCTGGCCAGCGGCCGATCCGGGAA 3 163 0 GCCAGCGGCC 0.529119 -48 GGTGAATCTGGCGCCTGGCCGACCACC 3 194 1 GCGCCTGGCC 0.8369 -17 TTCGACCAACCGCTACGGCGTGAGCAGACG 4 77 0 CGCTACGGCG 0.859748 -68 TACCACCCTAACGACCCGGCGAAGTGGGAA 4 121 0 ACGACCCGGC 0.860142 -24 GCTAAACCCGAGGCGCGGCCCACGACTGTC 5 45 1 AGGCGCGGCC 0.844796 -41 CCGTGGGATAACGCACGGCG 6 1 0 ACGCACGGCG 0.875922 -126 CCGGGCAATCGGGCTTGCCCGGTGACGCTA 6 38 1 GGGCTTGCCC 0.522606 -89 TCCAGCGCGAGCCTTCGGCCTCGGCGCATC 6 81 1 GCCTTCGGCC 0.952041 -46 CGGTCCGCGGGGATTATCCG 6 117 0 CGGTCCGCGG 0.864201 -10 CGCCTGCCTTCGTAGCGGCGTCTTTCTGAT 7 25 0 CGTAGCGGCG 0.639645 -170 ACGCCGTTCAACGTCTCGCCTGCCTTCGTA 7 41 0 ACGTCTCGCC 0.682128 -154 GCCGGCACGCAGCAGCCGGCGTAGCTACCA 7 106 0 AGCAGCCGGC 0.865773 -89 GCCGGCTGCTGCGTGCCGGCGGGACACTGG 7 116 1 GCGTGCCGGC 0.973295 -79 GCGGGACACTGGGAGCCGCCCTGGCGGCGC 7 134 1 GGGAGCCGCC 0.681283 -61 CATCTAGCGGAGGCGCCGCCAGGGCGGCTC 7 146 0 AGGCGCCGCC 0.95109 -49 ACTCAAGATGAGGAGCTCGCC 7 184 1 AGGAGCTCGC 0.660512 -11 ********** Masking position 6 Map Score: 58.4436 Number of sites scoring better than the average of aligned sites = 72514 Number in coding regions = 67616 Number in noncoding regions = 4898 Number of orfs with sites within 600 bp upstream = 1576 Fraction of orfs with sites within 600 bp upstream = 0.253132 Motif number 2 GAACGTTCTGGGCCGGTTCGGCCCAGCAAA 1 19 1 GGCCGGTTCG 0.736502 -282 CGCTGGAACGGCACACGCGGTTCTGCGCGT 1 58 0 GCACACGCGG 0.766851 -243 ATATGCATAGTGACTCGCTGGAACGGCACA 1 73 0 TGACTCGCTG 0.376231 -228 GCCCGATACAGGCCGGGGGTGCTCCCTTGG 1 103 0 GGCCGGGGGT 0.913705 -198 CCTCGGTAGTGGCTGCCGGGCTCTCCGGAT 1 136 1 GGCTGCCGGG 0.82913 -165 GGGGCAGGTCGGCCGCTTCGATCGATGGCC 1 168 1 GGCCGCTTCG 0.857593 -133 CTCCTGGGAAGCTCTCGGGGTTCGGCGAAC 1 219 1 GCTCTCGGGG 0.746868 -82 ACGTCCGTGCGGCCTCTCTGGATTATTGAG 1 280 0 GGCCTCTCTG 0.807851 -21 ACGCCGCAGGTGCCAGCCGGGGGTCACGAC 2 22 0 TGCCAGCCGG 0.781717 -135 ATCAGGGCACGGCCACCGCGAACCGCAGCA 2 102 0 GGCCACCGCG 0.989882 -55 CAGACCCACTCCCTGATCACCTGAT 3 6 1 CCACTCCCTG 0.55576 -205 CTCTGGGACCGGCCACGGTGCCGCCGGCGT 3 88 1 GGCCACGGTG 0.974339 -123 GCCACGGTGCCGCCGGCGTTCCCGGACGTG 3 99 1 CGCCGGCGTT 0.828244 -112 CGCGGCCGCCGGACACCTGGCGCAGCACGT 3 124 0 GGACACCTGG 0.827866 -87 CCAGGTGTCCGGCGGCCGCGTGCATGGTGT 3 134 1 GGCGGCCGCG 0.751271 -77 GGTGGGCTCTGGCCAGCGGCCGATCCGGGA 3 164 0 GGCCAGCGGC 0.67407 -47 GCTGGCCAGAGCCCACCGGTGAATCTGGCG 3 177 1 GCCCACCGGT 0.840757 -34 GTGAATCTGGCGCCTGGCCGACCACC 3 195 1 CGCCTGGCCG 0.915599 -16 GGGGCTTTTGCGTCTGCTCGGCCAACCTAG 4 19 0 CGTCTGCTCG 0.412292 -126 TTTTGCGTCTGCTCACGCCGTAGCGGTTGG 4 72 1 GCTCACGCCG 0.65229 -73 GTTCCCACTTCGCCGGGTCGTTAGGGTGGT 4 120 1 CGCCGGGTCG 0.706736 -25 GCACACCGTGAAGTCCCGAT 5 1 1 GCACACCGTG 0.803636 -85 TCGTGGGCCGCGCCTCGGGTTTAGCTATGA 5 40 0 CGCCTCGGGT 0.876809 -46 CTAAGTGTAGCGTCACCGGGCAAGCCCGAT 6 45 0 CGTCACCGGG 0.916927 -82 GAGGCCGAAGGCTCGCGCTGGATCACGGCT 6 73 0 GCTCGCGCTG 0.628295 -54 GCGAGCCTTCGGCCTCGGCGCATCGACGCC 6 87 1 GGCCTCGGCG 0.954874 -40 CTCGGCGCATCGACGCCCGGATAATCCCCG 6 100 1 CGACGCCCGG 0.949651 -27 CGGTCCGCGGGGATTATCCGGG 6 115 0 GTCCGCGGGG 0.801397 -12 ATCAGAAAGACGCCGCTACGAAGGCAGGCG 7 25 1 CGCCGCTACG 0.607667 -170 TTCAACGTCTCGCCTGCCTTCGTAGCGGCG 7 35 0 CGCCTGCCTT 0.53278 -160 GACGCCGTGATCACGCCGTTCAACGTCTCG 7 53 0 TCACGCCGTT 0.144128 -142 GAATCACGAATGACGCCGTGATCACGCCGT 7 64 0 TGACGCCGTG 0.778623 -131 CCCAGTGTCCCGCCGGCACGCAGCAGCCGG 7 117 0 CGCCGGCACG 0.817986 -78 CGTGCCGGCGGGACACTGGGAGCCGCCCTG 7 127 1 GGACACTGGG 0.835363 -68 GCGGAGGCGCCGCCAGGGCGGCTCCCAGTG 7 140 0 CGCCAGGGCG 0.950838 -55 GCCCTGGCGGCGCCTCCGCTAGATGACCGG 7 151 1 CGCCTCCGCT 0.909479 -44 ********** Masking position 4 Map Score: 40.0473 Number of sites scoring better than the average of aligned sites = 100862 Number in coding regions = 94186 Number in noncoding regions = 6676 Number of orfs with sites within 600 bp upstream = 1697 Fraction of orfs with sites within 600 bp upstream = 0.272567 Motif number 3 AGCACCCCCGGCCTGTATCGGGCGGTCCTCGGT 1 110 1 GCTTATCGGC 0.778637 -191 CTGCCGGGCTCTCCGGATCTGGGGCAGGTCGGC 1 148 1 CCCGATCGGG 0.958559 -153 AGGAGAAAAGGTCTGAATGCGGCTACGGCCATC 1 191 0 GCTAATGGGC 0.804226 -110 CGCGTCGTCACGCGCAATCCAGCGGGTTCGCCG 1 241 0 CCGAATCAGC 0.969535 -60 GTTCGCGATCATGGATATCAGGGCACGGCCACC 2 115 0 AGGTATCGGG 0.827241 -42 GACCATTGATCAGGTGATCAGGGAGTGGGTCTG 3 11 0 CGGGATCGGG 0.992112 -200 CACGCGGCCGCCGGACACCTGGCGCAGCACGTC 3 123 0 CGGCACCGGC 0.96935 -88 CTCTGGCCAGCGGCCGATCCGGGAACACCATGC 3 155 0 CGCGATCGGG 0.954206 -56 CAGAGCCCACCGGTGAATCTGGCGCCTGGCCGA 3 183 1 CGTAATCGGC 0.968661 -28 CCATTTCGGGCCCGAAATGGGGGCTTTTGCGTC 4 35 0 CCGAATGGGG 0.97015 -110 CCATTTCGGGCCCGAAATGGGGGCTTTTGCGTC 4 48 1 CCGAATGGGG 0.97015 -97 GCGAAGTGGGAACGAAATCCAGCCAGTTCGACC 4 100 0 ACGAATCAGC 0.841344 -45 CCCTAACGACCCGGCGAAGTGGGAACGAAATCC 4 113 0 CGGGAAGGGG 0.786988 -32 TACATCTCCTGTCCATGAGGCGACAGTCGTG 5 65 0 CGTCATGGGC 0.913604 -21 GGCAGATAGCCGGGCAATCGGGCTTGCCCGGTG 6 29 1 CGGAATCGGC 0.993536 -98 GGCTAAGTGTAGCGTCACCGGGCAAGCCCGATT 6 44 0 ACGCACCGGC 0.853721 -83 GCTACACTTAGCCGTGATCCAGCGCGAGCCTTC 6 64 1 GCGGATCAGC 0.937963 -63 CACGAATGACGCCGTGATCACGCCGTTCAACGT 7 57 0 GCGGATCCGC 0.871632 -138 CTTGAGTTGTCCGGTCATCTAGCGGAGGCGCCG 7 158 0 CGGCATCAGC 0.964125 -37 * ** **** *** Masking position 7 Map Score: 27.7504 Number of sites scoring better than the average of aligned sites = 7214 Number in coding regions = 6649 Number in noncoding regions = 565 Number of orfs with sites within 600 bp upstream = 450 Fraction of orfs with sites within 600 bp upstream = 0.0722775 Motif number 4 AACGTTCTGGGCCGGTTCGGCCCAGCAAATG 1 20 1 GCCGGTTGGC 0.702697 -281 AACGGCACACGCGGTTCTGCGCGTACCGCAC 1 51 0 GCGGTTCGCG 0.982572 -250 AACCGCGTGTGCCGTTCCAGCGAGTCACTAT 1 66 1 GCCGTTCAGC 0.674386 -235 ATACAGGCCGGGGGTGCTCCCTTGGATATGC 1 97 0 GGGGTGCCCC 0.878563 -204 GCCTGTATCGGGCGGTCCTCGGTAGTGGCTG 1 120 1 GGCGGTCTCG 0.847856 -181 GATCCGGAGAGCCCGGCAGCCACTACCGAGG 1 136 0 GCCCGGCGCC 0.777797 -165 CGGATCTGGGGCAGGTCGGCCGCTTCGATCG 1 161 1 GCAGGTCGCC 0.789705 -140 TTCGATCGATGGCCGTAGCCGCATTCAGACC 1 184 1 GGCCGTACCG 0.607854 -117 GGAAGCTCTCGGGGTTCGGCGAACCCGCTGG 1 225 1 GGGGTTCGCG 0.989471 -76 CGGCGAACCCGCTGGATTGCGCGTGACGACG 1 241 1 GCTGGATGCG 0.238765 -60 GGATTATTGAGCTGTTTCGCGTCGTCACGCG 1 260 0 GCTGTTTGCG 0.826786 -41 GGTGCCAGCCGGGGGTCACGACCGCAAGAAC 2 13 0 GGGGGTCCGA 0.600979 -144 GTTTGTGTTTGGCGGTCAACCCGCTGCTAGA 2 50 1 GGCGGTCACC 0.896571 -107 GGTGCGTGCTGCGGTTCGCGGTGGCCGTGCC 2 96 1 GCGGTTCCGG 0.945026 -61 CCATTGATCAGGTGATCAGGGAGTGGGTCTG 3 11 0 GGTGATCGGG 0.71395 -200 CGGCACCGTGGCCGGTCCCAGAGAATTGGCG 3 80 0 GCCGGTCCAG 0.62546 -131 CGGTGCCGCCGGCGTTCCCGGACGTGCTGCG 3 103 1 GGCGTTCCGG 0.963675 -108 TGCTGCGCCAGGTGTCCGGCGGCCGCGTGCA 3 127 1 GGTGTCCGCG 0.850278 -84 CCGCGTGCATGGTGTTCCCGGATCGGCCGCT 3 149 1 GGTGTTCCGG 0.921931 -62 ATTCACCGGTGGGCTCTGGCCAGCGGCCGAT 3 170 0 GGGCTCTGCC 0.472484 -41 GGTGGTCGGCCAGGCGCCAGA 3 200 0 GGTGGTCGCC 0.778449 -11 CCCGAAATGGGGGCTTTTGCGTCTGCTCGGC 4 27 0 GGGCTTTGCG 0.922612 -118 CCCGAAATGGGGGCTTTTGCGTCTGCTCACG 4 58 1 GGGCTTTGCG 0.922612 -87 CACTTCGCCGGGTCGTTAGGGTGGTAAGTC 4 125 1 GGTCGTTGGG 0.725988 -20 ATTGTCATCGGGACTTCACGGTGTGC 5 6 0 GGACTTCCGG 0.685377 -80 CCGGGCAATCGGGCTTGCCCGGTGACGCTAC 6 38 1 GGGCTTGCCG 0.679916 -89 ATCCAGCGCGAGCCTTCGGCCTCGGCGCATC 6 80 1 AGCCTTCGCC 0.428021 -47 TTCGGCCTCGGCGCATCGACGCCCGGATAAT 6 94 1 GCGCATCACG 0.447314 -33 CCGTGATCACGCCGTTCAACGTCTCGCCTGC 7 48 0 GCCGTTCACG 0.899288 -147 GGCGCCGCCAGGGCGGCTCCCAGTGTCCCGC 7 134 0 GGGCGGCCCC 0.79457 -61 ******* *** Masking position 1 Map Score: 35.8607 Number of sites scoring better than the average of aligned sites = 40816 Number in coding regions = 38096 Number in noncoding regions = 2720 Number of orfs with sites within 600 bp upstream = 1231 Fraction of orfs with sites within 600 bp upstream = 0.197719 Motif number 5 CGGTTCTTGCGGTCGTGACCC 2 2 1 GGTTCTTGCG 0.956705 -155 TGGCACCTGCGGCGTTTGTGTTTGGCGGTC 2 37 1 GGCGTTTGTG 0.945744 -120 CGGTGCCGCCGGCGTTCCCGGACGTGCTGC 3 103 1 GGCGTTCCCG 0.980428 -108 CCGCGTGCATGGTGTTCCCGGATCGGCCGC 3 149 1 GGTGTTCCCG 0.896537 -62 TTCACCGGTGGGCTCTGGCCAGCGGCCGAT 3 170 0 GGCTCTGGCC 0.902918 -41 CCGAAATGGGGGCTTTTGCGTCTGCTCGGC 4 27 0 GGCTTTTGCG 0.993586 -118 CCGAAATGGGGGCTTTTGCGTCTGCTCACG 4 59 1 GGCTTTTGCG 0.993586 -86 GCGAGCCTTCGGCCTCGGCGCATCGACGCC 6 87 1 GGCCTCGGCG 0.957098 -40 TAGCTACGCCGGCTGCTGCGTGCCGGCGGG 7 109 1 GGCTGCTGCG 0.971161 -86 CCGCCCTGGCGGCGCCTCCGCTAGATGACC 7 149 1 GGCGCCTCCG 0.981124 -46 ********** Masking position 2 Map Score: 13.6532 Number of sites scoring better than the average of aligned sites = 6855 Number in coding regions = 6454 Number in noncoding regions = 401 Number of orfs with sites within 600 bp upstream = 291 Fraction of orfs with sites within 600 bp upstream = 0.0467395 Motif number 6 GGCCGGTTCGGCCCAGCAAATGGTGCGGTAC 1 29 1 GCCCAGCAAT 0.951817 -272 GATCCGGAGAGCCCGGCAGCCACTACCGAGG 1 136 0 GCCCGGCGCC 0.975979 -165 AGCTCTCGGGGTTCGGCGAACCCGCTGGATT 1 228 1 GTTCGGCAAC 0.632153 -73 GCAGCGGGTTGACCGCCAAACACAAACGCCG 2 46 0 GACCGCCAAC 0.86722 -111 CGGTGGCCGTGCCCTGATATCCATGATCGCG 2 114 1 GCCCTGAATC 0.765712 -43 CCGTGGCCGGTCCCAGAGAATTGGCGCGCGC 3 75 0 TCCCAGAAAT 0.289483 -136 TGAATCTGGCGCCTGGCCGACCACC 3 196 1 GCCTGGCGAC 0.935562 -15 TTTTGCGTCTGCTCGGCCAACCTAGCCCAAC 4 13 0 GCTCGGCAAC 0.98863 -132 CACCCTAACGACCCGGCGAAGTGGGAACGAA 4 117 0 ACCCGGCAAG 0.856793 -28 TAAACCCGAGGCGCGGCCCACGACTGTCGCC 5 47 1 GCGCGGCCAC 0.934008 -39 AAGCCCGATTGCCCGGCTATCTGCCGTGGGA 6 23 0 GCCCGGCATC 0.992922 -104 GCGCATCGACGCCCGGATAATCCCCGCGGAC 6 104 1 GCCCGGAAAT 0.976115 -23 TCCGCTAGATGACCGGACAACTCAAGATGAG 7 165 1 GACCGGAAAC 0.962515 -30 ******* *** Masking position 4 Map Score: 13.2358 Number of sites scoring better than the average of aligned sites = 6746 Number in coding regions = 6242 Number in noncoding regions = 504 Number of orfs with sites within 600 bp upstream = 442 Fraction of orfs with sites within 600 bp upstream = 0.0709926 Motif number 7 ACCGCACCATTTGCTGGGCCGAACCGGCCC 1 28 0 TTGCTGGGCC 0.420388 -273 GGATCTGGGGCAGGTCGGCCGCTTCGATCG 1 162 1 CAGGTCGGCC 0.914447 -139 ATCCAGCGGGTTCGCCGAACCCCGAGAGCT 1 228 0 TTCGCCGAAC 0.865569 -73 ATAATCCAGAGAGGCCGCACGGACGTC 1 284 1 GAGGCCGCAC 0.823153 -17 ACGCACCGATGTCGTTGGACAGTCTAGCAG 2 73 0 GTCGTTGGAC 0.930207 -84 TCTCAAGCTTTACGCCGACCATTGATCAGG 3 30 0 TACGCCGACC 0.929613 -181 CGGCGGCACCGTGGCCGGTCCCAGAGAATT 3 84 0 GTGGCCGGTC 0.913218 -127 CATGCACGCGGCCGCCGGACACCTGGCGCA 3 130 0 GCCGCCGGAC 0.978772 -81 TCCCGGATCGGCCGCTGGCCAGAGCCCACC 3 164 1 GCCGCTGGCC 0.966017 -47 GGTGGTCGGCCAGGCGCCAGA 3 200 0 GTGGTCGGCC 0.989651 -11 CAGTTGGGCTAGGTTGGCCGAGCAGACGC 4 10 1 TAGGTTGGCC 0.900051 -135 GCCGTAGCGGTTGGTCGAACTGGCTGGATT 4 88 1 TTGGTCGAAC 0.799914 -57 TGAGGCGACAGTCGTGGGCCGCGCCTCGGG 5 51 0 GTCGTGGGCC 0.963279 -35 TCCAGCGCGAGCCTTCGGCCTCGGCGCATC 6 81 1 GCCTTCGGCC 0.831198 -46 AGGCAGGCGAGACGTTGAACGGCGTGATCA 7 46 1 GACGTTGAAC 0.730978 -149 CGTTGGTAGCTACGCCGGCTGCTGCGTGCC 7 103 1 TACGCCGGCT 0.747293 -92 ********** Masking position 7 Map Score: 18.0373 Number of sites scoring better than the average of aligned sites = 23091 Number in coding regions = 21748 Number in noncoding regions = 1343 Number of orfs with sites within 600 bp upstream = 795 Fraction of orfs with sites within 600 bp upstream = 0.12769 Motif number 8 TAGAGTGAGAACGTTCTGGGCCGG 1 5 1 GTGAGAACGT 0.64062 -296 GCATATCCAAGGGAGCACCCCCGGCCTGTA 1 97 1 GGGAGCACCC 0.798722 -204 GCTGTTTCGCGTCGTCACGCGCAATCCAGC 1 251 0 GTCGTCACGC 0.961542 -50 GTGCCAGCCGGGGGTCACGACCGCAAGAAC 2 13 0 GGGGTCACGA 0.939752 -144 CACCGCGAACCGCAGCACGCACCGATGTCG 2 89 0 CGCAGCACGC 0.949483 -68 ATCAATGGTCGGCGTAAAGCTTGAGACCAA 3 34 1 GGCGTAAAGC 0.83355 -177 GGACACCTGGCGCAGCACGTCCGGGAACGC 3 114 0 CGCAGCACGT 0.773129 -97 ACCCGGCGAAGTGGGAACGAAATCCAGCCA 4 108 0 GTGGGAACGA 0.750545 -37 TATCTGCCGTGGGATAACGCACGGCG 6 7 0 GGGATAACGC 0.949372 -120 GTTATCCCACGGCAGATAGCCGGGCAATCG 6 19 1 GGCAGATAGC 0.781266 -108 CTTCGGCCTCGGCGCATCGACGCCCGGATA 6 93 1 GGCGCATCGA 0.514589 -34 GAATGACGCCGTGATCACGCCGTTCAACGT 7 57 0 GTGATCACGC 0.930957 -138 CGATACGCCAGGAATCACGAATGACGCCGT 7 75 0 GGAATCACGA 0.57338 -120 CGTGATTCCTGGCGTATCGTTGGTAGCTAC 7 86 1 GGCGTATCGT 0.777009 -109 CCAGTGTCCCGCCGGCACGCAGCAGCCGGC 7 116 0 GCCGGCACGC 0.942763 -79 GCGCCGCCAGGGCGGCTCCCAGTGTCCCGC 7 134 0 GGCGGCTCCC 0.91778 -61 GAGTTGTCCGGTCATCTAGCGGAGGCGCCG 7 158 0 GTCATCTAGC 0.569084 -37 ACTCAAGATGAGGAGCTCGCC 7 184 1 AGGAGCTCGC 0.650285 -11 ********** Masking position 9 Map Score: 15.9456 Number of sites scoring better than the average of aligned sites = 17632 Number in coding regions = 16048 Number in noncoding regions = 1584 Number of orfs with sites within 600 bp upstream = 932 Fraction of orfs with sites within 600 bp upstream = 0.149695 Motif number 9 ********** No masking Map Score: -9.21273e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 10 ********** No masking Map Score: -9.21273e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 11 ********** No masking Map Score: -9.21273e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0