AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i001_bsub_mtub_100.orf -o001_bsub_mtub_100.ace -a/home/amcguire/genomes/ORF_bsub.txt -z/home/amcguire/genomes/bsub.fna -g0.55 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.55 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 purE 300 phosphoribosylaminoimidazole carboxylase I #2 purC 72 phosphoribosylaminoimidazole succinocarboxamide synthetase #3 purM 101 phosphoribosylaminoimidazole synthetase #4 aldA 201 aldA #5 Rv0769 30 hypothetical protein Rv0769 #6 Rv0770 97 hypothetical protein Rv0770 #7 purC 50 purC #8 purQ 300 purQ #9 purL 191 purL #10 Rv0807 300 hypothetical protein Rv0807 #11 purF 86 purF #12 purM 30 purM #13 purN 115 purN Motif number 1 GCTTCTTCTAAGCCGCCGCAGTTTGAAAAT 2 25 1 AGCCGCCGCA 0.946933 -48 GGCAGCCGAACTGCGCTGCCTTTATGTCAT 3 21 0 CTGCGCTGCC 0.917914 -81 GGCAGCGCAGTTCGGCTGCCTTTCTCTTTC 3 31 1 TTCGGCTGCC 0.783537 -71 ATCGGATGGTCGCGGCAGGAGGCAAGCCAG 4 22 1 CGCGGCAGGA 0.96053 -180 CGCGACGCGACGTGGCCCCTGGTGCATCGG 4 84 1 CGTGGCCCCT 0.650741 -118 CCGGCGCCGGCGCCGATGCAG 6 2 1 CGGCGCCGGC 0.985586 -96 CCCCCACCTCATCGCCCCGCTCTGCATCGG 6 23 0 ATCGCCCCGC 0.874172 -75 CTTGTGGGGGCGTGCCCCCACCTCATCGCC 6 37 0 CGTGCCCCCA 0.806233 -61 GAGCGCCGCTCTCCCCCGCCAGCGGATGGG 6 78 0 CTCCCCCGCC 0.986886 -20 ATCCGCCGCACGACGGCGCCCTGTGCTGGT 7 20 0 CGACGGCGCC 0.734196 -31 GCGCCAGCCTATCCGCCGCACGACGGCGCC 7 30 0 ATCCGCCGCA 0.938615 -21 CGCGCCAGCCTATCCGCCGC 7 41 0 CGCGCCAGCC 0.977657 -10 CATTGCCCGGCTCCTGGCGGC 8 2 1 ATTGCCCGGC 0.784893 -299 GCCCGGCGACAGCGGCCGCCAGGAGCCGGG 8 16 0 AGCGGCCGCC 0.782057 -285 ATCTGCCCGCCGCGCCCGGCGACAGCGGCC 8 29 0 CGCGCCCGGC 0.99409 -272 TGAGGAGGAGCGCCGGTGGCCAGGGTGGTC 8 60 1 CGCCGGTGGC 0.711962 -241 GGCGGAGATTCTTGACCCGCAGGGCCAGGC 8 107 1 CTTGACCCGC 0.599011 -194 CGCACCGACAATCGCCTGGCCCTGCGGGTC 8 120 0 ATCGCCTGGC 0.810434 -181 GAGATGCCCAAGCCGCCCCAGCGCACCGAC 8 141 0 AGCCGCCCCA 0.888315 -160 ATTCTGCGATCTCGGCAAGCGTGGTGTCAT 8 229 0 CTCGGCAAGC 0.73955 -72 GACGATCAGCCGGGACCCGCA 8 290 1 CGGGACCCGC 0.831947 -11 CACCATCCTGAGCGCCCGCCCCGATGTCAG 9 28 1 AGCGCCCGCC 0.964269 -164 TAGGTATGCCCGCGGCAAGAACCCCGGTGG 9 72 0 CGCGGCAAGA 0.621093 -120 GGGCATACCTATCCGTCGGCTTGTCCGTGT 9 91 1 ATCCGTCGGC 0.531933 -101 TCCGTGTCAACGCGGCCGCAGCGCGATGGG 9 114 1 CGCGGCCGCA 0.615349 -78 GGCAGTCTAGCTAGGCCCCATCGCGCTGCG 9 130 0 CTAGGCCCCA 0.840984 -62 TGGGGCCTAGCTAGACTGCCTCCGTGATGT 9 140 1 CTAGACTGCC 0.546196 -52 GATGTCTCCGCTCGCCCGGACCCCGCGCAA 9 165 1 CTCGCCCGGA 0.968846 -27 CGCGGTCAACCTGCGCCGACCCGCGATCTG 10 63 0 CTGCGCCGAC 0.655495 -238 GTATGGACCCCGCGCCAGCGCGGTCAACCT 10 81 0 CGCGCCAGCG 0.666302 -220 GAGTTATCGCCTTGACCGCACAATTCTGTA 10 108 0 CTTGACCGCA 0.711948 -193 ATCTAAGAACATCGGCCGGAAACCTGGTTG 10 160 1 ATCGGCCGGA 0.951021 -141 CTTGACATGGCGCGGCCGCAACAACCAGGT 10 181 0 CGCGGCCGCA 0.615349 -120 CAGTTCGGAACTGGGCTCGCATACAACCCG 10 213 1 CTGGGCTCGC 0.812953 -88 GGCGGCCAAGCGCCGCTGCTGAGACTGGGA 10 244 0 CGCCGCTGCT 0.843461 -57 AGCAGCGGCGCTTGGCCGCCATCTGGATGG 10 254 1 CTTGGCCGCC 0.984105 -47 CACACACCATAGCCGCAGCTCAGCACGCCG 11 14 0 AGCCGCAGCT 0.529802 -73 TCGGGCACCCCGGCGCCACCCTCACACACC 11 36 0 CGGCGCCACC 0.877249 -51 GACGTCTGCACCGCCGAATTCGGCT 11 72 0 CTGCACCGCC 0.877231 -15 AAAACGCACGCGCGGTAGCCTTTATCGCG 12 12 1 CGCGGTAGCC 0.812762 -19 CTGCGGTTGGTGAGGCCGCAACTGTCTGAG 13 12 1 TGAGGCCGCA 0.564936 -104 AGGAGCCAGACTAGGCTCGCCGT 13 103 1 CTAGGCTCGC 0.662995 -13 ********** Masking position 6 Map Score: 56.4833 Number of sites scoring better than the average of aligned sites = 6944 Number in coding regions = 6481 Number in noncoding regions = 463 Number of orfs with sites within 600 bp upstream = 262 Fraction of orfs with sites within 600 bp upstream = 0.0420816 Motif number 2 AGAAAGGCAGCCGAACTGCGCTGCCTTTATG 3 25 0 CCGAACTGGC 0.452834 -77 GGCTTGCCTCCTGCCGCGACCATCCGATAGC 4 19 0 CTGCCGCGCC 0.644796 -183 ATGGGACTGTCCGCGACGCGACGTGGCCCCT 4 73 1 CCGCGACGGA 0.911509 -129 ACGCGACGTGGCCCCTGGTGCATCGGTCAGG 4 88 1 GCCCCTGGGC 0.681716 -114 GGCCGCTACACCGTCCTGACCGATGCACCAG 4 102 0 CCGTCCTGCC 0.860713 -100 CTAGCGGGTTGACAGCGCAGAAAG 5 4 1 GCGGGTTGCA 0.765871 -27 CTCTGCATCGGCGCCGGCGCCGG 6 3 0 GCGCCGGCCC 0.793812 -95 CGCCGATGCAGAGCGGGGCGATGAGGTGGGG 6 21 1 GAGCGGGGGA 0.794142 -77 CCGCACGACGGCGCCCTGTGCTGGTATCTCT 7 14 0 GCGCCCTGGC 0.899435 -37 GCGACAGCGGCCGCCAGGAGCCGGGCAATG 8 10 0 CCGCCAGGGC 0.954735 -291 CTGTCGCCGGGCGCGGCGGGCAGATCTGAGG 8 34 1 GCGCGGCGGC 0.544136 -267 GAGGAGGAGCGCCGGTGGCCAGGGTGGTCGT 8 61 1 GCCGGTGGCA 0.348858 -240 TCAAGAATCTCCGCCTTGGGCATCACATGCA 8 91 0 CCGCCTTGGC 0.948535 -210 GATTCTTGACCCGCAGGGCCAGGCGATTGTC 8 113 1 CCGCAGGGCA 0.939767 -188 AGCCGCCCCAGCGCACCGACAATCGCCTGGC 8 130 0 GCGCACCGCA 0.82555 -171 ATCTGATATTCCGAGATGCCCAAGCCGCCCC 8 152 0 CCGAGATGCC 0.80096 -149 TATCAGATGTGCGTCAGGGCAAGAGGTTTGA 8 175 1 GCGTCAGGCA 0.673983 -126 ATCTCGGCAAGCGTGGTGTCATCAACCGTAT 8 220 0 GCGTGGTGCA 0.895608 -81 ACTGGACGATCAGCCGGGACCCGCA 8 286 1 CAGCCGGGCC 0.886057 -15 TGAGCGCCCGCCCCGATGTCAGCCCGACGGC 9 36 1 CCCCGATGCA 0.763693 -156 GCGGCAAGAACCCCGGTGGCATCAGCCGTCG 9 60 0 CCCCGGTGCA 0.922224 -132 ATAGGTATGCCCGCGGCAAGAACCCCGGTGG 9 72 0 CCGCGGCAGA 0.65155 -120 CGCGCTGCGGCCGCGTTGACACGGACAAGCC 9 108 0 CCGCGTTGCA 0.965362 -84 GTCAACGCGGCCGCAGCGCGATGGGGCCTAG 9 119 1 CCGCAGCGGA 0.839815 -73 CGGGGTCCGGGCGAGCGGAGACATCACGGAG 9 159 0 GCGAGCGGGA 0.801667 -33 CGACGTTTTGCGCGGGGTCCGGGCGAGCGG 9 172 0 GCGCGGGGCC 0.992339 -20 TCACCGCCTTGGGAACTCAGGGAG 10 4 1 CCGCCTTGGA 0.930925 -297 TCAACCTGCGCCGACCCGCGATCTGTGAGAT 10 57 0 CCGACCCGGA 0.660008 -244 GACCCCGCGCCAGCGCGGTCAACCTGCGCCG 10 75 0 CAGCGCGGCA 0.80162 -226 GACCGCGCTGGCGCGGGGTCCATACAGAATT 10 86 1 GCGCGGGGCC 0.992339 -215 GCAAGAGTTATCGCCTTGACCGCACAATTCT 10 111 0 TCGCCTTGCC 0.577359 -190 TGTTGCGGCCGCGCCATGTCAAGTTCAGTTC 10 188 1 GCGCCATGCA 0.939483 -113 TTCCGGCGTGCTGAGCTGCGGCTATG 11 6 1 GCGTGCTGGC 0.833632 -81 GAGGGTGGCGCCGGGGTGCCCGACACGTAAG 11 43 1 CCGGGGTGCC 0.946882 -44 CAAAACGCACGCGCGGTAGCCTTTATCGCG 12 11 1 GCGCGGTACC 0.840727 -20 ******** ** Masking position 8 Map Score: 47.508 Number of sites scoring better than the average of aligned sites = 3000 Number in coding regions = 2820 Number in noncoding regions = 180 Number of orfs with sites within 600 bp upstream = 104 Fraction of orfs with sites within 600 bp upstream = 0.0167041 Motif number 3 TGTACCATGCCCGGTTTGTATTGCTTCCTCATAA 1 213 1 CGGTTGTTTC 0.781556 -88 TCCCAACATTCGGGTTAGGAGGCCTTCC 2 55 1 CGGTAGGGGC 0.980914 -18 CTAGCGGGTTGACAGCGCAGAAAGGAAG 5 5 1 CGGTGACGCC 0.702515 -26 TCCCCCGCCAGCGGATGGGGGTACCTCCCACTTG 6 63 0 GGGTGGGGTC 0.989783 -35 CCGTCGTGCGGCGGATAGGCTGGCGCG 7 34 1 GGGTAGGTGC 0.733223 -17 CCGCTGTCGCCGGGCGCGGCGGGCAGATCTGAGG 8 31 1 CGGGCGGGGC 0.964977 -270 CGCCGGTGGCCAGGGTGGTCGTGCATGTGATGCC 8 70 1 CGGTGGTGTC 0.995215 -231 TGCGGGTCCCGGCTGATCGTCCAGTCCTCGAT 8 279 0 CGGTGATGTC 0.96655 -22 GGCGGGCGCTCAGGATGGTGGTGCGCAAAATGGA 9 14 0 CGGTGGTGTC 0.995215 -178 GTTGACCGCGCTGGCGCGGGGTCCATACAGAATT 10 83 1 CGGGCGGGTC 0.967172 -218 TCTGCGGTTGGTGAGGCCGCAACTGTC 13 4 1 GGGTGGTAGC 0.855036 -112 CACTGGGATGCAGGCTGGTGGTGCTCACACGCTT 13 67 1 CGGTGGTGTC 0.995215 -49 * ** **** ** * Masking position 14 Map Score: 13.4445 Number of sites scoring better than the average of aligned sites = 193 Number in coding regions = 166 Number in noncoding regions = 27 Number of orfs with sites within 600 bp upstream = 14 Fraction of orfs with sites within 600 bp upstream = 0.00224863 Motif number 4 AAATATCTCCCCGAACGAGGGCAGAAAGAGAA 3 52 0 CCGAAGAGGC 0.781017 -50 TCGGATGGTCGCGGCAGGAGGCAAGCCAGTCT 4 23 1 GCGGCGGGGC 0.936607 -179 GAGACCGTATCCGCAAGGCCGCTACACCGTCC 4 117 0 CCGCAGGCGC 0.985468 -85 GATATTGCCTCATCGAGACCGTATCCGCAAGG 4 131 0 CATCGGACGT 0.719767 -71 TCCCCCGCCAGCGGATGGGGGTACCTCCCACT 6 65 0 GCGGAGGGGT 0.80511 -33 AGCCTATCCGCCGCACGACGGCGCCCTGTGCT 7 23 0 CCGCAGAGGC 0.978106 -28 TTGCCCGGCTCCTGGCGGCCGCTGTCGCCGGG 8 13 1 CCTGGGGCGC 0.946404 -288 GGGCAGATCTGAGGAGGAGCGCCGGTGGCCAG 8 51 1 GAGGAGACGC 0.870551 -250 CGCCGGTGGCCAGGGTGGTCGTGCATGTGATG 8 70 1 CAGGGGGCGT 0.966159 -231 GATGCCCAAGCCGCCCCAGCGCACCGACAATC 8 137 0 CCGCCCACGC 0.702634 -164 TGCGGGTCCCGGCTGATCGTCCAGTCCTCG 8 281 0 CCGGCGACGT 0.960892 -20 GGCGGGCGCTCAGGATGGTGGTGCGCAAAATG 9 16 0 CAGGAGGGGT 0.944153 -176 GGGCTGACATCGGGGCGGGCGCTCAGGATGGT 9 29 0 CGGGGGGCGC 0.934789 -163 GCCCCGATGTCAGCCCGACGGCTGATGCCACC 9 45 1 CAGCCGAGGC 0.973974 -147 AACGCGGCCGCAGCGCGATGGGGCCTAGCTAG 9 122 1 CAGCGGAGGG 0.878445 -70 CGAGCGGAGACATCACGGAGGCAGTCTAGCTA 9 147 0 CATCAGGGGC 0.86811 -45 TGCGCGGGGTCCGGGCGAGCGGAGACATCACG 9 162 0 CCGGGGACGG 0.899545 -30 CGGGTCGGCGCAGGTTGACCGCGCTGGCGCGG 10 70 1 CAGGTGACGC 0.864573 -231 ATCCCAGTCTCAGCAGCGGCGCTTGGCCGCCA 10 243 1 CAGCACGCGC 0.854509 -58 TCGGTGGATCCATCCAGATGGCGGCCAAGCGC 10 261 0 CATCCGAGGC 0.844763 -40 ATAAAGGCTACCGCGCGTGCGTTTTG 12 5 0 CCGCGGTCGT 0.748885 -26 CACTGGGATGCAGGCTGGTGGTGCTCACACGC 13 67 1 CAGGCGGGGT 0.953589 -49 ***** ** *** Masking position 11 Map Score: 33.4605 Number of sites scoring better than the average of aligned sites = 2177 Number in coding regions = 1996 Number in noncoding regions = 181 Number of orfs with sites within 600 bp upstream = 114 Fraction of orfs with sites within 600 bp upstream = 0.0183103 Motif number 5 TAAAAAATACCCGCTCTGCATTGCACTTAT 1 243 0 CCGCTCTGCA 0.977204 -58 GGCAGCCGAACTGCGCTGCCTTTATGTCAT 3 21 0 CTGCGCTGCC 0.911704 -81 AGGAGGCAAGCCAGTCTGCTAAACATGCAG 4 38 1 CCAGTCTGCT 0.861921 -164 CCTCATCGCCCCGCTCTGCATCGGCGCCGG 6 17 0 CCGCTCTGCA 0.977204 -81 GAGCGCCGCTCTCCCCCGCCAGCGG 6 83 0 CCGCTCTCCC 0.986142 -15 TCAGATCTGCCCGCCGCGCCCGGCGACAGC 8 33 0 CCGCCGCGCC 0.942036 -268 ACATGCACGACCACCCTGGCCACCGGCGCT 8 68 0 CCACCCTGGC 0.958006 -233 ATTTTGCGCACCACCATCCTGAGCGCCCGC 9 17 1 CCACCATCCT 0.48333 -175 CGTGATGTCTCCGCTCGCCCGGACCCCGCG 9 162 1 CCGCTCGCCC 0.91819 -30 CGCAGGTTGACCGCGCTGGCGCGGGGTCCA 10 78 1 CCGCGCTGGC 0.970758 -223 TTCCGGCGTGCTGAGCTGCGGC 11 3 1 CCGGCGTGCT 0.913007 -84 CACCCCGGCGCCACCCTCACACACCATAGC 11 31 0 CCACCCTCAC 0.774727 -56 GAGGGTGGCGCCGGGGTGCCCGACACGTAA 11 43 1 CCGGGGTGCC 0.956207 -44 GTGAGCACCACCAGCCTGCATCCCAGTGCA 13 65 0 CCAGCCTGCA 0.922315 -51 ********** Masking position 1 Map Score: 15.1137 Number of sites scoring better than the average of aligned sites = 1261 Number in coding regions = 1161 Number in noncoding regions = 100 Number of orfs with sites within 600 bp upstream = 90 Fraction of orfs with sites within 600 bp upstream = 0.0144555 Motif number 6 TTATGAGGAAGCAATACAAACCGGGCATGGTAC 1 214 0 GCTACAAACG 0.746843 -87 CCTCATAAGTGCAATGCAGAGCGGGTATTTTTT 1 239 1 GCTGCAGACG 0.975972 -62 TTCTTCTAAGCCGCCGCAGTTTGAAAATTCCCA 2 27 1 CCCGCAGTTG 0.679634 -46 TGACATAAAGGCAGCGCAGTTCGGCTGCCTTTC 3 22 1 GCCGCAGTCG 0.970732 -80 GGCGCCGGCGCCGATGCAGAGCGGGGCGATGAG 6 13 1 CCTGCAGACG 0.982164 -85 ACCAGAGATACCAGCACAGGGCGCCGTCGTGCG 7 11 1 CCCACAGGCG 0.927196 -40 GCCAGCCTATCCGCCGCACGACGGCGCCCTGTG 7 25 0 CCCGCACGCG 0.881978 -26 CACCGGCGCTCCTCCTCAGATCTGCCCGCCGCG 8 45 0 CCCTCAGACT 0.945561 -256 CCGCCCCAGCGCACCGACAATCGCCTGGCCCTG 8 126 0 GCCGACAACG 0.649484 -175 TCGTCGACCTCCAGCTCAAACCTCTTGCCCTGA 8 188 0 CCCTCAAACT 0.874311 -113 CGTGTCAACGCGGCCGCAGCGCGATGGGGCCTA 9 116 1 CGCGCAGCCG 0.86301 -76 TCGCCCGGACCCCGCGCAAAACGTCG 9 176 1 CCCGCAAACG 0.9896 -16 GCGCGGTCAACCTGCGCCGACCCGCGATCTGTG 10 61 0 CCCGCCGACC 0.926251 -240 GTATGCGAGCCCAGTTCCGAACTGAACTTGACA 10 204 0 CCTTCCGACT 0.702183 -97 CACCATAGCCGCAGCTCAGCACGCCGGAA 11 7 0 GCCTCAGCCG 0.956 -80 GTCGGGCACCCCGGCGCCACCCTCACACACCAT 11 34 0 CCCGCCACCT 0.856811 -53 GCCGAATTCGGCGGTGCAGACGTC 11 73 1 GCTGCAGAGT 0.409746 -14 GACAGTTGCGGCCTCACCAACCGCAGA 13 5 0 GCCACCAACG 0.883872 -111 GCCTAGTCTGGCTCCTCAAAGCGTGTGAGCACC 13 86 0 GCCTCAAACG 0.953759 -30 ** ****** ** Masking position 7 Map Score: 19.2746 Number of sites scoring better than the average of aligned sites = 1173 Number in coding regions = 1087 Number in noncoding regions = 86 Number of orfs with sites within 600 bp upstream = 56 Fraction of orfs with sites within 600 bp upstream = 0.00899454 Motif number 7 ATGGATATATCGCAGAAGCGAACGACTGAC 1 177 1 CGCAGAAGCG 0.941946 -124 CGTCGCGTCGCGGACAGTCCCATGTTAGCT 4 66 0 CGGACAGTCC 0.93969 -136 GAGGCAATATCGGACAAGTGTCCAATCGAT 4 152 1 CGGACAAGTG 0.947354 -50 TGATGAGAGTCGGAGAAGTTGGGAGCGGTA 4 181 1 CGGAGAAGTT 0.879593 -21 CGTCGTGCGGCGGATAGGCTGGCGCG 7 35 1 CGGATAGGCT 0.812759 -16 ATGCCCAAGGCGGAGATTCTTGACCCGCAG 8 99 1 CGGAGATTCT 0.737347 -202 CCCCAGCGCACCGACAATCGCCTGGCCCTG 8 126 0 CCGACAATCG 0.829604 -175 ATCTGATATTCCGAGATGCCCAAGCCGCCC 8 153 0 CCGAGATGCC 0.740637 -148 TTGCCGAGATCGCAGAATCACTGTTGGCCA 8 241 1 CGCAGAATCA 0.688122 -60 GACAAGCCGACGGATAGGTATGCCCGCGGC 9 86 0 CGGATAGGTA 0.465544 -106 CGCGTTGACACGGACAAGCCGACGGATAGG 9 98 0 CGGACAAGCC 0.984277 -94 TCGCCTTGACCGCACAATTCTGTATGGACC 10 102 0 CGCACAATTC 0.69122 -199 ATCCAGATGGCGGCCAAGCGCCGCTGCTGA 10 252 0 CGGCCAAGCG 0.908003 -49 ********** Masking position 6 Map Score: 6.20483 Number of sites scoring better than the average of aligned sites = 1670 Number in coding regions = 1550 Number in noncoding regions = 120 Number of orfs with sites within 600 bp upstream = 82 Fraction of orfs with sites within 600 bp upstream = 0.0131706 Motif number 8 TTGACATTATCCATGTCCGTTGTTAAGATAA 1 36 1 CCATGTCCGT 0.995565 -265 TGCGATATATCCATGTCAGTTTTATCGATCA 1 160 0 CCATGTCAGT 0.993041 -141 GATACATGTACCATGCCCGGTTTGTATTGCT 1 207 1 CCATGCCCGT 0.987959 -94 GCGGACAGTCCCATGTTAGCTGCATGTTTAG 4 56 0 CCATGTTAGT 0.956688 -146 TCGATTGGACACTTGTCCGATATTGCCTCAT 4 150 0 ACTTGTCCGT 0.895476 -52 TGCGGCCGCGCCATGTCAAGTTCAGTTCGGA 10 191 1 CCATGTCAAT 0.956141 -110 ********* * Masking position 4 Map Score: 4.88817 Number of sites scoring better than the average of aligned sites = 90 Number in coding regions = 78 Number in noncoding regions = 12 Number of orfs with sites within 600 bp upstream = 12 Fraction of orfs with sites within 600 bp upstream = 0.0019274 Motif number 9 AACTGCGCTGCCTTTATGTCATTTTTCAAG 3 13 0 CCTTTATGTC 0.801466 -89 CCTATTCACTCCTTTAAGGCGCTTTTCAAA 3 82 0 CCTTTAAGGC 0.763692 -20 GGACACTTGTCCGATATTGCCTCATCGAGA 4 145 0 CCGATATTGC 0.810258 -57 ATCTGATATTCCGAGATGCCCAAGCCGCCC 8 153 0 CCGAGATGCC 0.896486 -148 ACCACGCTTGCCGAGATCGCAGAATCACTG 8 234 1 CCGAGATCGC 0.984491 -67 TTGGCCAACACCGTGATCGAGGACTGGACG 8 264 1 CCGTGATCGA 0.892318 -37 TAGACTGCCTCCGTGATGTCTCCGCTCGCC 9 151 1 CCGTGATGTC 0.937831 -41 AGAGTTATCGCCTTGACCGCACAATTCTGT 10 109 0 CCTTGACCGC 0.932899 -192 GGCCGATGTTCTTAGATCGCTAGATCTGGT 10 147 0 CTTAGATCGC 0.780266 -154 CGCGCGGTAGCCTTTATCGCG 12 20 1 CCTTTATCGC 0.962053 -11 ********** Masking position 6 Map Score: 5.57317 Number of sites scoring better than the average of aligned sites = 556 Number in coding regions = 522 Number in noncoding regions = 34 Number of orfs with sites within 600 bp upstream = 41 Fraction of orfs with sites within 600 bp upstream = 0.00658529 Motif number 10 ********** No masking Map Score: -5.24137e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 11 ********** No masking Map Score: -5.24137e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ********** No masking Map Score: -5.24137e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0