AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i210_bsub_mtub_300.orf -o210_bsub_mtub_300.ace -a/home/amcguire/genomes/ORF_bsub.txt -z/home/amcguire/genomes/bsub.fna -g0.55 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.55 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 ileS 300 isoleucyl-tRNA synthetase #2 ylxS 300 alternate gene name: ymxA; similar to hypothetical proteins #3 nusA 34 nusA #4 truB 81 tRNA pseudouridine 55 synthase #5 rpsO 156 ribosomal protein S15 (BS18) #6 pnpA 172 polynucleotide phosphorylase (PNPase) #7 gpsI 300 gpsI #8 rpsO 156 rpsO #9 ribF 210 ribF #10 Rv2795c 144 hypothetical protein Rv2795c #11 Rv2798c 130 hypothetical protein Rv2798c #12 infB 85 infB #13 Rv2840c 126 hypothetical protein Rv2840c #14 Rv2842c 194 hypothetical protein Rv2842c Motif number 1 CTACATGATTCCGGCCATCCCGGACTCTCACCAT 1 90 0 CCGCCCCGGA 0.904436 -211 TTTTCTAAAAGGGTGGTACCGCGAGATAAGCTTT 1 213 1 GGGGGCGCGA 0.884609 -88 GAGGCAAAGAGTGGGGAAACCCGCTCTTTTGTAT 2 154 1 GTGGGCCCGC 0.873178 -147 ACCGACGGTTGCTAGGTAACTGGGGCTAAATATG 5 115 1 GCTGGCTGGG 0.692589 -42 CGTAAAAAGCGGGAGGATTCCCGCTTTTTTATCG 6 12 1 GGGGGCCCGC 0.553014 -161 ACCATTTGCTGGGCCGAACCGGCCCAGAACGTTC 7 19 0 GGGCGCGGCC 0.943434 -282 ACACGCGGTTCTGCGCGTACCGCACCATTTGCTG 7 42 0 CTGGCCCGCA 0.776924 -259 GCATATCCAAGGGAGCACCCCCGGCCTGTATCGG 7 97 1 GGGGCCCCGG 0.499945 -204 CGGCCTGTATCGGGCGGTCCTCGGTAGTGGCTGC 7 118 1 CGGCGCTCGG 0.759133 -183 GTAGTGGCTGCCGGGCTCTCCGGATCTGGGGCAG 7 141 1 CCGGCCCGGA 0.917267 -160 ATCGATCGAAGCGGCCGACCTGCCCCAGATCCGG 7 160 0 GCGCCCTGCC 0.919483 -141 CTGGGAAGCTCTCGGGGTTCGGCGAACCCGCTGG 7 222 1 CTCGGCGGCG 0.878564 -79 GAGCTGTTTCGCGTCGTCACGCGCAATCCAGCGG 7 249 0 GCGCGCGCGC 0.969339 -52 GACGTCCGTGCGGCCTCTCTGGATTATTGAGCT 7 278 0 GCGCCCTGGA 0.815986 -23 CGGTTCTTGCGGTCGTGACCCCCGGCTGGCACC 8 10 1 CGGCGCCCCC 0.933054 -147 CGTGACCCCCGGCTGGCACCTGCGGCGTTTGTGT 8 24 1 GGCGGCTGCG 0.771147 -133 CAGTCTAGCAGCGGGTTGACCGCCAAACACAAAC 8 50 0 GCGGTCCGCC 0.666191 -107 CCAACGACATCGGTGCGTGCTGCGGTTCGCGGTG 8 85 1 CGGGCCTGCG 0.890319 -72 GGATATCAGGGCACGGCCACCGCGAACCGCAGCA 8 102 0 GCAGGCCGCG 0.918088 -55 CGCGCCAATTCTCTGGGACCGGCCACGGTGCCGC 9 78 1 CTCGGCGGCC 0.878894 -133 CGCAGCACGTCCGGGAACGCCGGCGGCACCGTGG 9 100 0 CCGGACCGGC 0.506875 -111 GACGTGCTGCGCCAGGTGTCCGGCGGCCGCGTGC 9 123 1 GCCGGCCGGC 0.58467 -88 TCCGGGAACACCATGCACGCGGCCGCCGGACACC 9 137 0 CCAGCCGGCC 0.894538 -74 GCTCTGGCCAGCGGCCGATCCGGGAACACCATGC 9 155 0 GCGCCCCGGG 0.970536 -56 CCAGATTCACCGGTGGGCTCTGGCCAGCGGCCGA 9 171 0 CGGGGCTGGC 0.924287 -40 GGGGGCTTTTGCGTCTGCTCGGCCAACCTAGCCC 10 16 0 GCGCTCGGCC 0.835644 -129 GACGCAAAAGCCCCCATTTCGGGCCCGAAATGGG 10 35 1 CCCCACGGGC 0.762762 -110 GGGCTTTTGCGTCTGCTCACGCCGTAGCGGTTGG 10 68 1 GTCGCCGCCG 0.738076 -77 ACTTACCACCCTAACGACCCGGCGAAGTGGGAAC 10 120 0 CTACGCGGCG 0.70608 -25 TCTCGTTTGACTGTGACGACGCGGAGCCGAC 11 8 0 CTGGACGCGG 0.706849 -123 ACCTTTGATGCGGTGAATTCTGCGGTAGTTCCCG 11 61 1 CGGGACTGCG 0.81645 -70 GCACACCGTGAAGTCCCGATGACAATGCG 12 6 1 CCGGACCCGA 0.632544 -80 CGACAGTCGTGGGCCGCGCCTCGGGTTTAGCTAT 12 42 0 GGGCGCTCGG 0.755998 -44 CGGCAGATAGCCGGGCAATCGGGCTTGCCCGGTG 13 28 1 CCGGCCGGGC 0.58141 -99 ACGGCTAAGTGTAGCGTCACCGGGCAAGCCCGAT 13 45 0 GTACGCCGGG 0.639819 -82 GTGATCCAGCGCGAGCCTTCGGCCTCGGCGCATC 13 77 1 GCGGCCGGCC 0.740715 -50 GATTATCCGGGCGTCGATGCGCCGAGGCCGAAGG 13 92 0 GCGCGCGCCG 0.975677 -35 GTCTCGCCTGCCTTCGTAGCGGCGTCTTTCTGAT 14 25 0 CCTCGCGGCG 0.819918 -170 ACGTTGAACGGCGTGATCACGGCGTCATTCGTGA 14 57 1 GCGGACGGCG 0.958469 -138 GGCGTAGCTACCAACGATACGCCAGGAATCACGA 14 85 0 CCACGCGCCA 0.503654 -110 CCCGCCGGCACGCAGCAGCCGGCGTAGCTACCAA 14 105 0 CGCGCCGGCG 0.51135 -90 GCTGCGTGCCGGCGGGACACTGGGAGCCGCCCTG 14 123 1 GGCGGCTGGG 0.565235 -72 ACACTGGGAGCCGCCCTGGCGGCGCCTCCGCTAG 14 139 1 CCGCCCGGCG 0.956563 -56 *** ** ***** Masking position 10 Map Score: 63.776 Number of sites scoring better than the average of aligned sites = 4739 Number in coding regions = 4383 Number in noncoding regions = 356 Number of orfs with sites within 600 bp upstream = 177 Fraction of orfs with sites within 600 bp upstream = 0.0284292 Motif number 2 AACGTTCTGGGCCGGTTCGGCCCAGCAAAT 7 20 1 GCCGGTTCGG 0.738664 -281 ATCCGGAGAGCCCGGCAGCCACTACCGAGG 7 136 0 CCCGGCAGCC 0.661968 -165 GGGGCAGGTCGGCCGCTTCGATCGATGGCC 7 168 1 GGCCGCTTCG 0.859557 -133 TTCGATCGATGGCCGTAGCCGCATTCAGAC 7 184 1 GGCCGTAGCC 0.864631 -117 CCAGCGGGTTCGCCGAACCCCGAGAGCTTC 7 226 0 CGCCGAACCC 0.54984 -75 AATCCAGAGAGGCCGCACGGACGTC 7 286 1 GGCCGCACGG 0.977364 -15 GGTCGTGACCCCCGGCTGGCACCTGCGGCG 8 21 1 CCCGGCTGGC 0.79214 -136 CAAACACAAACGCCGCAGGTGCCAGCCGGG 8 31 0 CGCCGCAGGT 0.70056 -126 CACCGCGAACCGCAGCACGCACCGATGTCG 8 89 0 CGCAGCACGC 0.587633 -68 GGTTCGCGGTGGCCGTGCCCTGATATCCAT 8 108 1 GGCCGTGCCC 0.814996 -49 GCGGCACCGTGGCCGGTCCCAGAGAATTGG 9 82 0 GGCCGGTCCC 0.844091 -129 CGGGAACGCCGGCGGCACCGTGGCCGGTCC 9 93 0 GGCGGCACCG 0.983998 -118 CCAGGTGTCCGGCGGCCGCGTGCATGGTGT 9 134 1 GGCGGCCGCG 0.513508 -77 TTCCCGGATCGGCCGCTGGCCAGAGCCCAC 9 163 1 GGCCGCTGGC 0.712997 -48 CGGTGAATCTGGCGCCTGGCCGACCACC 9 193 1 GGCGCCTGGC 0.915883 -18 GGGCTTTTGCGTCTGCTCGGCCAACCTAGC 10 18 0 GTCTGCTCGG 0.412605 -127 CGTCTGCTCACGCCGTAGCGGTTGGTCGAA 10 77 1 CGCCGTAGCG 0.792983 -68 GTCGGCTCCGCGTCGTCACA 11 1 1 GTCGGCTCCG 0.943461 -130 AGTCGTGGGCCGCGCCTCGGGTTTAGCTAT 12 42 0 CGCGCCTCGG 0.883419 -44 GCGAGCCTTCGGCCTCGGCGCATCGACGCC 13 87 1 GGCCTCGGCG 0.434353 -40 CGGTCCGCGGGGATTATCCGGG 13 115 0 GTCCGCGGGG 0.743167 -12 ATCAGAAAGACGCCGCTACGAAGGCAGGCG 14 25 1 CGCCGCTACG 0.759449 -170 CGTTCAACGTCTCGCCTGCCTTCGTAGCGG 14 37 0 CTCGCCTGCC 0.576025 -158 TGGTAGCTACGCCGGCTGCTGCGTGCCGGC 14 106 1 GCCGGCTGCT 0.760522 -89 CCAGTGTCCCGCCGGCACGCAGCAGCCGGC 14 116 0 GCCGGCACGC 0.930622 -79 GCGCCGCCAGGGCGGCTCCCAGTGTCCCGC 14 134 0 GGCGGCTCCC 0.985125 -61 CCGCCCTGGCGGCGCCTCCGCTAGATGACC 14 149 1 GGCGCCTCCG 0.955812 -46 ********** Masking position 3 Map Score: 30.9907 Number of sites scoring better than the average of aligned sites = 4424 Number in coding regions = 4124 Number in noncoding regions = 300 Number of orfs with sites within 600 bp upstream = 176 Fraction of orfs with sites within 600 bp upstream = 0.0282686 Motif number 3 CGCTGGAACGGCACACGCGGTTCTGCGCGTACCGCA 7 52 0 GCCACGCGTC 0.988401 -249 CTACCGAGGACCGCCCGATACAGGCCGGGGGTGCTC 7 109 0 CCCCCGAAAC 0.72303 -192 GGGGTTCGGCGAACCCGCTGGATTGCGCGTGACGAC 7 235 1 GACCCGCGAC 0.988687 -66 GATTGCGCGTGACGACGCGAAACAGCTCAATAATCC 7 255 1 GAGACGCAAC 0.952253 -46 GTTTGGCGGTCAACCCGCTGCTAGACTGTCCAACGA 8 56 1 CACCCGCGTC 0.906902 -101 CGTTCGGTATGCGCGCGCCAATTCTCTGGGACCGGC 9 65 1 GCCGCGCATC 0.973718 -146 CACCATGCACGCGGCCGCCGGACACCTGGCGCAGCA 9 127 0 GCGCCGCGAC 0.993707 -84 GGTTGGCCGAGCAGACGCAAAAGCCCCCATTTCGGG 10 22 1 GCGACGCAAC 0.984092 -123 TACGGCGTGAGCAGACGCAAAAGCCCCCATTTCGGG 10 58 0 GCGACGCAAC 0.984092 -87 GAGGCCGAAGGCTCGCGCTGGATCACGGCTAAGTGT 13 67 0 GCCGCGCGAC 0.991329 -60 ATGACGCCGTGATCACGCCGTTCAACGTCTCGCCTG 14 49 0 GACACGCGTC 0.966013 -146 CCCTGGCGGCGCCTCCGCTAGATGACCGGACAACTC 14 152 1 GCTCCGCAAC 0.949759 -43 ** ***** * * * Masking position 6 Map Score: 16.7681 Number of sites scoring better than the average of aligned sites = 384 Number in coding regions = 358 Number in noncoding regions = 26 Number of orfs with sites within 600 bp upstream = 15 Fraction of orfs with sites within 600 bp upstream = 0.00240925 Motif number 4 CATTCCTCCACTGCATTTTTTCAGAAAATA 1 278 0 CTGCATTTTT 0.779786 -23 GAGCGGGTTTCCCCACTCTTTGCCTCGGTA 2 150 0 CCCCACTCTT 0.880786 -151 GTGGGGAAACCCGCTCTTTTGTATTGAACA 2 164 1 CCGCTCTTTT 0.985332 -137 TTTTTAGCCCCTGCTCTTTTGAAGCAGGGT 2 227 1 CTGCTCTTTT 0.956551 -74 ATACGCCTATCCTCTCTTTTT 4 2 0 CCTCTCTTTT 0.948253 -80 TATCGTCTGTCCTCTTTCTTCGTTTATAAG 4 31 1 CCTCTTTCTT 0.884969 -51 GGGAATCCTCCCGCTTTTTACGA 6 4 0 CCGCTTTTTA 0.843502 -169 GGGAGGATTCCCGCTTTTTTATCGTATTAA 6 22 1 CCGCTTTTTT 0.971583 -151 CAATTACGAACTCCTCTCTTCGTTGTGTGA 6 152 0 CTCCTCTCTT 0.884562 -21 ********** Masking position 7 Map Score: 7.53917 Number of sites scoring better than the average of aligned sites = 655 Number in coding regions = 527 Number in noncoding regions = 128 Number of orfs with sites within 600 bp upstream = 114 Fraction of orfs with sites within 600 bp upstream = 0.0183103 Motif number 5 GAGAGTCCGGGATGGCCGGAATCATGTAGAT 1 95 1 GATGCCGGAA 0.900926 -206 TCCCTTATGGGATGAGAGGGCTTTTTTTATT 1 251 1 GATGGAGGGC 0.87915 -50 GACGTCCGTGCGGCCTCTCTG 7 290 0 GACGCCGTGC 0.967057 -11 CGCGATCATGGATATCAGGGCACGGCCACCG 8 114 0 GATACAGGGC 0.903523 -43 CCTGGCGCAGCACGTCCGGGAACGCCGGCGG 9 108 0 CACGCCGGGA 0.763306 -103 GGTGGTCGGCCAGGCGCCAGATTCA 9 196 0 GTCGCCAGGC 0.896166 -15 GTTGGGCTAGGTTGGCCGAGCAGACGCAAAA 10 13 1 GTTGCCGAGC 0.839858 -132 CGCATCAAAGGTGGCCCGGGTTAGAACAAGT 11 42 0 GTGGCCGGGT 0.790369 -89 GTGAAGTCCCGATGACAATGCGTCATAGCTA 12 18 1 GATGCAATGC 0.542318 -68 TCCCACGGCAGATAGCCGGGCAATCGGGCTT 13 23 1 GATACCGGGC 0.963562 -104 TCGGCGCATCGACGCCCGGATAATCCCCGCG 13 101 1 GACGCCGGAT 0.92996 -26 GCGTCTTTCTGATGGCAGGATGTTGCT 14 7 0 GATGCAGGAT 0.821887 -188 TAGCGGAGGCGCCGCCAGGGCGGCTCCCAGT 14 141 0 GCCGCAGGGC 0.939278 -54 GCCTCCGCTAGATGACCGGACAACTCAAGAT 14 162 1 GATGCCGGAC 0.98334 -33 **** ****** Masking position 6 Map Score: 10.676 Number of sites scoring better than the average of aligned sites = 803 Number in coding regions = 748 Number in noncoding regions = 55 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 6 GACTCTCACCATCTCCGGGTCGCTATGAAGG 1 71 0 ATCTCCGGTC 0.978585 -230 CGAGACAAAATTCTCCTGTTCAATACAAAAG 2 179 0 TTCTCCTGTC 0.966279 -122 TTTACTTTTTAGCCCCTGCTCTTTTGAAGCA 2 222 1 AGCCCCTGTC 0.956093 -79 GCGGCCGACCTGCCCCAGATCCGGAGAGCCC 7 153 0 TGCCCCAGTC 0.843065 -148 CATCGGTGCGTGCTGCGGTTCGCGGTGGCCG 8 92 1 TGCTGCGGTC 0.877471 -65 CCACTCCCTGATCACCTGATCAATGGTCGGC 9 16 1 ATCACCTGTC 0.912968 -195 TCGTTCCCACTTCGCCGGGTCGTTAGGGTGG 10 118 1 TTCGCCGGTC 0.9336 -27 GTCGGCTCCGCGTCGTCACAGTCA 11 4 1 GGCTCCGCTC 0.897246 -127 TACCGCAGAATTCACCGCATCAAAGGTGGCC 11 57 0 TTCACCGCTC 0.866947 -74 TACATCTCCTGTCCATGAGGCGAC 12 72 0 ATCTCCTGCC 0.843658 -14 GGCGAGCTCCTCATCTTGAGTTGTC 14 180 0 AGCTCCTCTC 0.937413 -15 ******** ** Masking position 6 Map Score: 7.70645 Number of sites scoring better than the average of aligned sites = 569 Number in coding regions = 513 Number in noncoding regions = 56 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 7 AATCCGAAGTCACCGACGGTTGCTAGGTAACTG 5 104 1 CACCGAGGGC 0.988482 -53 TCACTATGCATATCCAAGGGAGCACCCCCGGCC 7 90 1 TATCCAGGGC 0.97264 -211 CGGCAGCCACTACCGAGGACCGCCCGATACAGG 7 121 0 TACCGAGAGC 0.825738 -180 CGGCTACGGCCATCGATCGAAGCGGCCGACCTG 7 172 0 CATCGACGGC 0.937447 -129 TCAGACCTTTTCTCCTGGGAAGCTCTCGGGGTT 7 208 1 TCTCCTGGGC 0.753515 -93 TGTCCAACGACATCGGTGCGTGCTGCGGTTCGC 8 82 1 CATCGGGCGC 0.873108 -75 CGTGCCCTGATATCCATGATCGCGAACCCATTG 8 121 1 TATCCAGAGC 0.831633 -36 GAAATGTCTCCATCAATGGGTTCGCGATCATGG 8 134 0 CATCAAGGTC 0.792737 -23 GCGCCAGATTCACCGGTGGGCTCTGGCCAGCGG 9 175 0 CACCGGGGTC 0.806485 -36 GAATTCACCGCATCAAAGGTGGCCCGGGTTAGA 11 48 0 CATCAAGGGC 0.967979 -83 ATGTGATGCACTTCGATGGACGCAAGGAAGCAA 11 105 1 CTTCGAGGGC 0.951234 -26 ATTCCTGGCGTATCGTTGGTAGCTACGCCGGCT 14 90 1 TATCGTGGGC 0.938028 -105 AGCGGAGGCGCCGCCAGGGCGGCTCCCAGTGTC 14 138 0 CCGCCAGGGC 0.866061 -57 ****** ** ** Masking position 4 Map Score: 8.3744 Number of sites scoring better than the average of aligned sites = 429 Number in coding regions = 398 Number in noncoding regions = 31 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 8 CATGACTGTCCCTTTCAACCGTTTTTTCAT 1 30 0 CCTTTCAACC 0.93364 -271 TTCAGGCCTTCATAGCGACCCGGAGATGGT 1 65 1 CATAGCGACC 0.954662 -236 TAAAAAAAGCCCTCTCATCCCATAAGGGAC 1 250 0 CCTCTCATCC 0.698821 -51 GCCCCAGTTACCTAGCAACCGTCGGTGACT 5 111 0 CCTAGCAACC 0.972945 -46 GACGTCCGTGCGGCCTCTCTGGATT 7 286 0 CCGTGCGGCC 0.932658 -15 GAAATCCAGCCAGTTCGACCAACCGCTACG 10 90 0 CAGTTCGACC 0.800962 -55 GACTTACCACCCTAACGACCCGGCGAAGTG 10 125 0 CCTAACGACC 0.934406 -20 CCGTTGCTTCCTTGCGTCCATCGAAGTGC 11 112 0 CCTTGCGTCC 0.971189 -19 CAGCAGCCGGCGTAGCTACCAACGATACGC 14 97 0 CGTAGCTACC 0.731665 -98 ********** Masking position 6 Map Score: 2.32014 Number of sites scoring better than the average of aligned sites = 158 Number in coding regions = 129 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 12 Fraction of orfs with sites within 600 bp upstream = 0.0019274 Motif number 9 ATGAAGGTAAGCGTATATCCATTTGCAATA 2 78 1 GCGTATATCC 0.806464 -223 GAGAGGATAGGCGTATATCGTCTGTCCTCT 4 16 1 GCGTATATCG 0.871469 -66 GGCCGAACCGGCCCAGAACGTTCTCACTCT 7 12 0 GCCCAGAACG 0.972176 -289 GGTGCGGTACGCGCAGAACCGCGTGTGCCG 7 50 1 GCGCAGAACC 0.983793 -251 GGCCGACCTGCCCCAGATCCGGAGAGCCCG 7 152 0 CCCCAGATCC 0.853698 -149 CCACCGCGAACCGCAGCACGCACCGATGTC 8 90 0 CCGCAGCACG 0.95189 -67 GAATTGGCGCGCGCATACCGAACGATTGGT 9 59 0 GCGCATACCG 0.945602 -152 CGGACACCTGGCGCAGCACGTCCGGGAACG 9 115 0 GCGCAGCACG 0.982433 -96 ********** Masking position 5 Map Score: 4.31166 Number of sites scoring better than the average of aligned sites = 323 Number in coding regions = 285 Number in noncoding regions = 38 Number of orfs with sites within 600 bp upstream = 15 Fraction of orfs with sites within 600 bp upstream = 0.00240925 Motif number 10 ATGTTTTAAGGGGGGAGACCGTTAA 3 20 1 GGGGGAGACG 0.923839 -15 CGGCGAACCCGCTGGATTGCGCGTGACGACG 7 241 1 GCTGGATTCG 0.969427 -60 GGCCCGAAATGGGGGCTTTTGCGTCTGCTCG 10 29 0 GGGGGCTTTG 0.905003 -116 GGCCCGAAATGGGGGCTTTTGCGTCTGCTCA 10 56 1 GGGGGCTTTG 0.905003 -89 GGTCGAACTGGCTGGATTTCGTTCCCACTTC 10 100 1 GCTGGATTCG 0.969427 -45 GCTATCTGCCGTGGGATAACGCACGGCG 13 8 0 GTGGGATACG 0.919966 -119 GAAGGCTCGCGCTGGATCACGGCTAAGTGTA 13 66 0 GCTGGATCCG 0.963354 -61 ACGTTGAACGGCGTGATCACGGCGTCATTCG 14 57 1 GCGTGATCCG 0.887176 -138 CTGCGTGCCGGCGGGACACTGGGAGCCGCCC 14 124 1 GCGGGACATG 0.866095 -71 ******** ** Masking position 5 Map Score: 3.5996 Number of sites scoring better than the average of aligned sites = 359 Number in coding regions = 303 Number in noncoding regions = 56 Number of orfs with sites within 600 bp upstream = 35 Fraction of orfs with sites within 600 bp upstream = 0.00562159 Motif number 11 CATCTGAATTTATGAACGTATT 1 3 0 TATGAACGTA 0.928267 -298 TCCGGGTCGCTATGAAGGCCTGAAGGAAAC 1 59 0 TATGAAGGCC 0.957465 -242 ATCGTAACGTGATGAACGTCCTAACCTACT 1 155 0 GATGAACGTC 0.841456 -146 ACTCTAATATTACGATGGCACTTTTTGCGC 2 29 0 TACGATGGCA 0.779231 -272 CTTGCTTAGGTATGAAGGTAAGCGTATATC 2 67 1 TATGAAGGTA 0.914265 -234 TTACTCCTATTATGAACGAAATGAATTGAA 6 113 0 TATGAACGAA 0.839433 -60 ACAATTACGAACTCCTCTCTTCGTT 6 158 0 TACGAACTCC 0.692708 -15 GATGCACTTCGATGGACGCAAGGAAGCAAC 11 109 1 GATGGACGCA 0.794258 -22 AAGACGCCGCTACGAAGGCAGGCGAGACGT 14 31 1 TACGAAGGCA 0.957424 -164 ********** Masking position 2 Map Score: 0.955774 Number of sites scoring better than the average of aligned sites = 323 Number in coding regions = 290 Number in noncoding regions = 33 Number of orfs with sites within 600 bp upstream = 40 Fraction of orfs with sites within 600 bp upstream = 0.00642467 Motif number 12 ********** No masking Map Score: 6.95865e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: 6.95865e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: 6.95865e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0