AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions034_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944241832 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 yetO 149 alternate gene name: yfnJ; similar to cytochrome P450 / NADPH-cytochrome P450 reductase #1 yfmA 40 yfmA #2 yflT 35 yflT #3 pel 190 pectate lyase #4 yflS 126 similar to 2-oxoglutarate/malate translocator #5 citS 126 two-component sensor histidine kinase #6 yflP 182 yflP #7 citM 195 secondary transporter of the Mg2+/citrate complex #8 yflN 55 yflN #9 yflM 199 similar to nitric-oxide synthase #10 yrhI 222 similar to transcriptional regulator (TetR/AcrR family) #11 yrhH 300 similar to methyltransferase #12 yvgR 170 similar to sulfite reductase #13 yvgS 197 yvgS #14 yvgT 186 similar to hypothetical proteins #15 yvgV 119 similar to hypothetical proteins #16 yvgW 159 similar to heavy metal-transporting ATPase #17 yvgX 80 similar to heavy metal-transporting ATPase #18 yvgY 73 similar to mercuric transport protein #19 yvgZ 127 similar to hypothetical proteins Motif 1 TTAATTAATTAAAAAACACAAAGGTTAGCACC 4 29 0 AAGTATATGCAAAAAATAAAAAATTAAGAAAA 10 61 0 TTTCATGAGAAAAAAAGATAAATTTAGAGGGA 14 82 0 AACGGTTTTAAAAAATTAAAAATACAAAAAAA 7 63 1 TTTTTCGGAAAAAAATGAAAAAGTTTAGTTCT 11 155 1 ATGGATTTTGAAAAATGAGAAAATTCCCTGTG 5 65 1 TTTTCCGAAAAAAAAGCAGAAAACATAATGTT 11 135 0 AAAATTGATCAAAAAGAACAAAACGGTTTTAA 7 42 1 CGAAGGAGTGAAAATAAAAAAAGGCAGACCGC 5 26 0 AAAGACCGCAAAAAAACCAAAAGGCCGACATT 3 33 0 AAGTGTCAATGAAAAACAAAAACCGGCATATA 16 19 0 TTAAAAATACAAAAAAACCAAATTATTTACTT 7 78 1 GAAAGTGAAAAACACAAAGGGTGCTAAC 4 6 1 AGCAAGGAAAAAACCAAAAGGCCAATGTC 3 7 1 TCATCGTTTTAAAATTAAAAAAGAAGCGGATC 15 88 0 TATTATCTTAAAAAAATAAACATCATCTTCAT 11 244 0 CAGAAAATTTAACAAACATAAAAGGGAGTCAT 14 160 1 AAGAAATATAGAAAACATGAAGGA 2 2 1 GGGGGTATATAAAAATGAAAGAAATATCGCGC 17 35 0 CTTCCTGGAAAACAATAAAAAACACCCGCGTG 9 19 0 AGTTTGTTGGAAGAAAAAGAAATACTCTGGAA 9 122 1 ATGTAAATAGAAAAAAGAGAAGGACTCCCTTC 12 13 0 ATGAGTTTGCGAAATTAAAAAAGCGCCCGGCA 14 29 0 TCATATATATAAAATAAATACAATACTCATTG 16 99 1 TGGTAGGATGAAAATAGAAAGAATAAACAGGA 18 42 1 TTGTCTTGTTAAAATAAAGAAGTGGGTCAATT 15 54 1 ATACGATGGCAAAAAGGCAAGACAAAAAGGGG 7 125 1 ATAAAATCTCACAAAATAGAAAATGGGGGTAC 3 161 1 GAAAATAGTTGACAAACATAGATGAAATACTG 13 161 0 ****** * *** MAP Score: 34.6828 Motif 2 AATATAGAAAACATGAAGGAGGAATATCGAC 2 14 1 CCGCAAAAAAACCAAAAGGCCGACATTGGCCTT 3 27 0 CGGAAAACAAGTATATAGGAGGAGACCTATTT 4 104 1 AAAGAAAAAGGCAGACGCGGTCTGC 5 2 1 GAGTGAAAATAAAAAAAGGCAGACCGCGTCTGC 5 20 0 AGGGAGAAAAAAATGTAAGCGGATTCATTTAAG 7 161 1 CAGGAATTGGGAAAGGAGGAGGAA 9 185 1 ATAAACTTATAACAGAAGAAAGAACAAAGAGGT 10 117 1 TTCTTTGTGAACAAAAGGAATGAATATTCATTC 10 170 1 ATTGGCATTAGAAAGAGGGCAGAAAACATTATG 11 111 1 TTTTTTTCCGAAAAAAAAGCAGAAAACATAATG 11 137 0 TGTAAATAGAAAAAAGAGAAGGACTCCCTTCTC 12 11 0 TAGCAAAAAAACCGATTTCGAAGTG 13 2 1 TATATTATGCAGAAAAAAACCGATTTCACTTCG 13 28 0 TTTAAAATTAAAAAAGAAGCGGATCGCAATTGA 15 80 0 ATGGTAGGATGAAAATAGAAAGAATAAACAGGA 18 41 1 AATAGAAAGAATAAACAGGAGGAATTGAT 18 54 1 * *** **** ** MAP Score: 16.1887 Motif 3 AAAGAAAAAGGCAGACGCGGTCTGCCTTT 5 8 1 GTAGAAAGGACGGCTGGTGCT 5 115 1 TCGGCCCGTCCGGCAGGCGCGGCGCAGCCGC 6 75 0 CCAGAAGGTTCGGCAGGGACGACAATTTCTA 6 106 0 AACCTTCTGGCGGCTGGGATGTCACAGCGCA 6 127 1 ATCAGTTTTGAGGCAGAAGCAGATC 6 167 1 AAAAAACACCCGCGTGGTGCGGGTG 9 4 0 TGAAGGAATGCGGCATGGACGCA 11 2 0 AAAAAGCGCCCGGCATACGCGGGCGCTTTTT 14 13 0 TATTGATTTTACGCTGGAGCGATTATAAAAT 14 118 1 TCGCGCCTTTAGGGAGGCGCGATATTTCTTT 17 19 1 ******* *** MAP Score: 12.1886 Motif 4 GGATTCATTTAAGGGGGAATGGAT 7 181 1 GTAATACCCTACGGGGGTATGGTAGGATGAA 18 23 1 AGAAAACATGAAGGAGGAATATCGAC 2 19 1 CCATTTTCTTACGAAGGAGTGAAAATAAAAA 5 38 0 CCATTTGATCAGGAGGGTATATACTTCTG 19 8 0 GGCAAGACAAAAAGGGGAGTAAGGGAGAAAA 7 140 1 AATGCCAATGATAAGGGAATACATACAGCCT 11 89 0 AGAGAAGGGAGTCCTTCTCTTTT 12 2 1 TAACAAACATAAAAGGGAGTCATCAGA 14 169 1 AAAATAGAAAATGGGGGTACATAGTGG 3 173 1 ATACGCTTTGAAGAGGGAACCCTAAATCGGA 16 131 1 CCAGGTGTATATAAAGGAGTGAGT 17 66 1 TCCGTACGAGCAGGAGGTATGTCTA 1 4 0 AAGATAAATTTAGAGGGAATACGGCTATTGC 14 69 0 TATATACACCTGGGGGGTATATAAAAATGAA 17 48 0 ATATCATTAAACAGAGGTGTACGC 19 113 1 ATACAACATTCCGGAGGTGTCATT 8 41 1 ATAACCATGTTTGAAGGAATGCGGCATGGAC 11 13 0 CTAAAAGTGAAGGAAGGTACCAACTAGACGG 11 211 0 GGAATTGGGAAAGGAGGAGGAA 9 187 1 TCTTTGTGAACAAAAGGAATGAATATTCATT 10 171 1 CAACTATTTTCTGGAGGTGCCGTTC 13 182 1 * ********* MAP Score: 11.6156 Motif 5 GAAATATAGAAAACATGAAGGAGGAATATCGAC 2 12 1 AGCAAGGAAAAAACCAAAAGGCCAATGTCGG 3 8 1 AAGACCGCAAAAAAACCAAAAGGCCGACATTGG 3 31 0 AATTTATCACAAAAATATAATAGCAAATTGAGG 3 125 0 AAATCTCACAAAATAGAAAATGGGGGTACATAG 3 164 1 GAAAGTGAAAAACACAAAGGGTGCTAACCT 4 7 1 ATTAATTAAAAAACACAAAGGTTAGCACCCTTT 4 25 0 GAAGGAGTGAAAATAAAAAAAGGCAGACCGCGT 5 24 0 GGCAAAAAGGCAAGACAAAAAGGGGAGTAAGGG 7 132 1 ATAACAGAAGAAAGAACAAAGAGGTGATATCAG 10 125 1 TTATCATTGGCATTAGAAAGAGGGCAGAAAACA 11 106 1 TTTTTCCGAAAAAAAAGCAGAAAACATAATGTT 11 135 0 TTTTTCGGAAAAAAATGAAAAAGTTTAGTTCTA 11 155 1 TTAAGATAATAAATAAACATAGGAAACCAAAAG 11 265 1 ATGTAAATAGAAAAAAGAGAAGGACTCCCTTCT 12 12 0 TAAGAATCCTAATGATAAAACGGCTATGCTTCA 12 44 0 AAAATTTAACAAACATAAAAGGGAGTCATCAGA 14 163 1 GTCTTGTTAAAATAAAGAAGTGGGTCAATTGCG 15 56 1 TTTTAAAATTAAAAAAGAAGCGGATCGCAATTG 15 81 0 GGGGGTATATAAAAATGAAAGAAATATCGCGCC 17 34 0 ATGAAAATAGAAAGAATAAACAGGAGGAATTGA 18 49 1 TGCCGACGCAAAAAATGAATCAGTTAGGTTTTA 19 39 0 *** * **** ** MAP Score: 10.2122 Motif 6 CAGCTTCTCAAGTATAGAAAAAACAGCGATC 0 39 1 AAGAAATATAGAAAACATGAAGGAG 2 4 1 AAAATCTCACAAAATAGAAAATGGGGGTACA 3 163 1 ACATTTTAATTAATTAAAAAACACAAAGGTT 4 35 0 CGAAGGAGTGAAAATAAAAAAAGGCAGACCG 5 27 0 ACGGTTTTAAAAAATTAAAAATACAAAAAAA 7 64 1 TTCCTGGAAAACAATAAAAAACACCCGCGTG 9 19 0 CAAAAAATAAAAAATTAAGAAAATATACCCA 10 53 0 TAATATAAAGTATATGCAAAAAATAAAAAAT 10 69 0 GCATATACTTTATATTAAAAAAAGTTTTTTT 10 83 1 GTTATAAGTTTATATGAAAAAAACTTTTTTT 10 99 0 TTTTCGGAAAAAAATGAAAAAGTTTAGTTCT 11 156 1 TAGACGGCAATGTATTGAAAAATGTTTCAAT 11 187 0 ATGCTTCATGTAAATAGAAAAAAGAGAAGGA 12 21 0 CATGATGATAACTATTAAGAATCCTAATGAT 12 61 0 TGAGTTTGCGAAATTAAAAAAGCGCCCGGCA 14 29 0 GCTCCAGCGTAAAATCAATAACATTTTCATG 14 107 0 TTGTCTTGTTAAAATAAAGAAGTGGGTCAAT 15 54 1 CATCGTTTTAAAATTAAAAAAGAAGCGGATC 15 88 0 AGTGTCAATGAAAAACAAAAACCGGCATATA 16 19 0 TATATGCTCATATATATAAAATAAATACAAT 16 92 1 ACACCTGGGGGGTATATAAAAATGAAAGAAA 17 43 0 GTAGGGTATTACAATAAAAAACGCT 18 4 0 ***** ***** MAP Score: 8.2938 Motif 7 CCGTATGAAATGCCTTCTATTTGACTACATTT 0 113 0 CAATTTGCTATTATATTTTTGTGATAAATTGG 3 128 1 CAAAGGTTAGCACCCTTTGTGTTTTTCACTTT 4 11 0 CAAAGGGTGCTAACCTTTGTGTTTTTTAATTA 4 24 1 AGACCGCGTCTGCCTTTTTCTTT 5 1 0 CAGACGCGGTCTGCCTTTTTTTATTTTCACTC 5 21 1 GTAAATAATTTGGTTTTTTTGTATTTTTAATT 7 76 0 TCTCCCTTACTCCCCTTTTTGTCTTGCCTTTT 7 136 0 ATGAATCCGCTTACATTTTTTTCTCCCTTACT 7 157 0 TTCCAGAGTATTTCTTTTTCTTCCAACAAACT 9 122 0 CTGTCTGATATCACCTCTTTGTTCTTTCTTCT 10 130 0 TAATGTTTTCTGCCCTCTTTCTAATGCCAATG 11 110 0 ATTATGTTTTCTGCTTTTTTTTCGGAAAAAAA 11 138 1 AACTAAACTTTTTCATTTTTTTCCGAAAAAAA 11 153 0 AGAAGGGAGTCCTTCTCTTTTTTCTATTTACA 12 12 1 GAAGTGAAATCGGTTTTTTTCTGCATAATATA 13 29 1 TTTTACAGTATTTCATCTATGTTTGTCAACTA 13 156 1 CCCTCTAAATTTATCTTTTTTTCTCATGAAAA 14 83 1 TCTGATGACTCCCTTTTATGTTTGTTAAATT 14 165 0 CAATTGCGATCCGCTTCTTTTTTAATTTTAAA 15 81 1 GGCTATATGCCGGTTTTTGTTTTTCATTGACA 16 16 1 TCAATGAGTATTGTATTTATTTTATATATATG 16 100 0 AGGCGCGATATTTCTTTCATTTTTATATACCC 17 33 1 CTCCTGTTTATTCTTTCTATTTTCATCCTACC 18 43 0 * ********* MAP Score: 3.54486 Motif 8 TGCGTCAATTGGGAGAACGGAATAATCATG 0 71 1 AAAACATGAAGGAGGAATATCGAC 2 21 1 AATAGAAAATGGGGGTACATAGTGG 3 175 1 AGACAAAAAGGGGAGTAAGGGAGAAAAAAA 7 144 1 ATTCATTTAAGGGGGAATGGAT 7 183 1 TGAACAAAAGGAATGAATATTCATTCCGTA 10 177 1 CAGCAGCAAAGGCTGTATGTATTCCCTTAT 11 80 1 GATTGGTATTGGGTGAATGTGCTATTATAA 13 76 1 TATACACCTGGGGGGTATATAAAAATGAAA 17 47 0 AATACCCTACGGGGGTATGGTAGGATGAAA 18 25 1 AGAATAAACAGGAGGAATTGAT 18 61 1 ATTTGATCAGGAGGGTATATACTTCTG 19 7 0 ********** MAP Score: 2.75653 Motif 9 GTTCTCCCAATTGACGCATGATCGCTGTTT 0 59 0 CGGTGGGATTTTGCAGAATGCCGCAATAGG 3 66 1 TTTGATCAATTTTCGGCATGAAAAAAATCC 7 25 0 TAATTCAGGCGTAATGACACACACTA 8 6 1 AATGACACCTCCGGAATGTTGTATGCCG 8 37 0 AAAGCGTTTATTGCCGCATGCTATCAGGAA 9 161 1 TCCGATTCGTTTACGGAATGAATATTCATT 10 188 0 GTTTGAAGGAATGCGGCATGGACGCA 11 6 0 CAGCCTCTGCTGTCGGAATGGATTTCCATA 11 41 0 TCATTTTTTGCGTCGGCATGCTTAGACAAC 19 54 1 ********** MAP Score: 1.22538