AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions042_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944242107 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 ykvY 300 similar to Xaa-Pro dipeptidase #1 ykvZ 281 similar to transcriptional regulator (LacI family) #2 glcT 62 transcriptional antiterminator (BglG family) #3 ptsG 238 phosphotransferase system (PTS) glucose-specific enzyme IIABC component #4 ptsH 97 histidine-containing phosphocarrier protein of the phosphotransferase system (PTS) (HPr protein) #5 pps 300 phosphoenolpyruvate synthase #6 pykA 42 pyruvate kinase #7 pfk 183 6-phosphofructokinase #8 yttI 300 similar to acetyl-CoA carboxylase #9 yvkC 300 similar to pyruvate,water dikinase Motif 1 TCATCCCGATAAAAGGAGCGGAAATTCCCAAA 0 66 1 AGTATACAGGAAGAGGAGCAGGAAATAAAATG 0 180 1 TAGAAATAAAAAAGGACTTTGTTCTCGACAT 1 9 1 ATGCAGATAAAAAAGGACGATGTCGAGAACAA 1 28 0 GTTTTTAGCTGAAAGGAGAAGATCACATGGGT 1 179 0 TGATTGAGGGAAAAAAACGGGAAGTTCATTCT 3 66 1 TTGGGTGCGCAAAAGAACGAGAATGAACTTCC 3 85 0 TTTACACAACAAAAAGGCATGAGCAAAATTGG 3 113 0 TCAGACTAGTAAAAAGAGGAGGTCAATTCTT 3 217 1 GCTTTAAGTTAAAAGGAGAATGATAAAA 4 79 1 CTAGTCGCATTAAAAAACTTGGTTTGAGCTGA 5 88 0 GGAAATTAAGAAAAGAACCTGGTGAAATTTCC 5 124 1 GTGCAATATAAAAAGAACCTGGGAAATTTCAC 5 145 0 TATTGCACAAAAACAGACACGGTGATATAATC 5 169 1 ATAAGGTGTTGAAACGACAAGGTTGACAGCGC 8 26 0 GCTCCGCAATAAAAAGACTAGAGAGAAAAACA 9 248 1 AAAATGAATGAAGAAAAGAGGGGTTTCAAAT 9 279 1 ******** ** MAP Score: 18.2458 Motif 2 AGATGGTGGGCTTTTATTATTACAGCTCTATCA 0 33 0 ACGACGCCTTCATTTTCTAATGCATTTTATTTC 0 201 0 GAACAAAGTCCTTTTTTATTTCTA 1 1 0 CGACATCGTCCTTTTTTATCTGCATTAAATAAA 1 35 1 TACCAGATATCTTTTTGTGTTTTTAGCTGAAAG 1 196 0 CACGTCAAACCTTTTTTCAATGCATTCA 2 5 0 TTGCTCATGCCTTTTTGTTGTGTAAAAGGGCAA 3 119 1 TTGACCTCCTCTTTTTACTAGTCTGACCTTACA 3 210 0 TCACCAGGTTCTTTTCTTAATTTCCATAGCTAG 5 116 0 TTCCCAGGTTCTTTTTATATTGCACAAAAACAG 5 152 1 ATGGAGATCCCTTTTCATTGTTTTTAGGGCAAT 7 115 1 AATTCGACAACTTTTTATTCGATGACGTGCTCG 8 79 0 CGGAAGCATACTTTTTCTTTTTCGTGAATATAT 8 236 0 ATCAGCGGCACTTTTTTTATTACATCATCAAGT 9 37 1 TTTCTTCATTCATTTTGTTTTTCTCTCTAGTCT 9 262 0 ****** ** * * MAP Score: 13.8647 Motif 3 ATGATAGAGCTGTAATAATAAAAGCCCACCATCTTCATCCCG 0 32 1 TGATGAATTTTTTCAGACGAAAAGCAGTTATGCTCTTAACGG 0 99 0 TGAACGTTACTGTCAGTATACAGGAAGAGGAGCAGGAAATAA 0 166 1 TGTTCTGTCTTCCATTGTAACAGGTTTTACCGGTGTTTGCCT 0 237 0 GATCTTCTCCTTTCAGCTAAAAACACAAAAAGATATCTGGTA 1 187 1 TGAATGCATTGAAAAAAGGTTTGACGTGCATTCTGT 2 4 1 TGAGCAAAATTGGGTGCGCAAAAGAACGAGAATGAACTTCCC 3 84 0 TCATGCCTTTTTGTTGTGTAAAAGGGCAAATGTAAACGGTTA 3 123 1 ACGCCGTGCTTGTCAGATGACAAGTACGGTTGTATGATATAA 4 20 1 GTAATAAAGCTTTAAGTTAAAAGGAGAATGATAAAA 4 71 1 CCATAGCTAGTCGCATTAAAAAACTTGGTTTGAGCTGATTCA 5 84 0 TCTGTTTTTGTGCAATATAAAAAGAACCTGGGAAATTTCACC 5 144 0 TACGTGCGCTTTCTAGTTAAAAAGTTATAGATATCCATCTTA 5 205 1 ATTCCTTAAATTTTATTTAAAAACAATTTATTTAATTGTATA 7 50 1 ACACCTTATCTGATTTCATACAAGCCTTTCCGAGCACGTCAT 8 49 1 GATGACAGCGTTTGACAAAAAAAGTACAATAGTTTCGGTAAA 8 115 1 CAAGTCTATCTGTTTGATGACATGCGGTGAAGAGAACCCTTC 8 165 1 GACTTGATGATGTAATAAAAAAAGTGCCGCTGATTAGAACAG 9 29 0 GCCGCCAGATTCCGAGAATAAAAGAAAATAGGCATACAGTAC 9 72 1 AAAAACAAAATGAATGAAGAAAAGAGGGGTTTCAAAT 9 273 1 ** ** ***** * MAP Score: 12.2127 Motif 4 TAATCAGCGGCACTTTTTTTATTACATCAT 9 35 1 GAAATTTCACCAGGTTCTTTTCTTAATTTC 5 125 0 TGAAATTTCCCAGGTTCTTTTTATATTGCA 5 146 1 TTTTCTAATGCATTTTATTTCCTGCTCCTC 0 192 0 CTTAACTATTCATTTTATTTAGGACTTTCT 9 149 1 AACATTATTTTTGAATGCGCTG 8 2 1 AATTCGTTGTCATGATTTTTAGCTGTAAGG 3 187 1 CAGCTCAAACCAAGTTTTTTAATGCGACTA 5 89 1 GCCTTTGGCTCACGTTTATTTTTTGTGACA 7 21 1 CGGAAGCATACTTTTTCTTTTTCGTGAATA 8 239 0 GAAGTTCATTCTCGTTCTTTTGCGCACCCA 3 86 1 TGGGTTTCTTCATTTTAATTGGGTTATGTC 1 154 0 GAATGAACTTCCCGTTTTTTTCCCTCAATC 3 67 0 TTAAACATAACATGATCATTGCCCTAAAAA 7 135 0 TATTTAAAAACAATTTATTTAATTGTATAA 7 63 1 TGATAGTAAACACTATCATTTAATTGTAGG 9 204 0 GATGGAGATCCCTTTTCATTGTTTTTAGGG 7 114 1 ACTGTATGCCTATTTTCTTTTATTCTCGGA 9 82 0 AAGCTCTTGTCAATATTTTTTTTTGAAGGG 5 270 1 GGTTTAATTTCATGTTTTTGGTTGAGAGGT 1 90 1 GAACAAAGTCCTTTTTTATTTCTA 1 4 0 GAAACTATTGTACTTTTTTTGTCAAACGCT 8 121 0 TTTCTTCATTCATTTTGTTTTTCTCTCTAG 9 265 0 ********** MAP Score: 9.57545 Motif 5 GGGAATTTCCGCTCCTTTTATCGGGATGAA 0 65 0 GAGAACAAAGTCCTTTTTTATTTCTA 1 6 0 CTCGACATCGTCCTTTTTTATCTGCATTAA 1 33 1 CATGTGATCTTCTCCTTTCAGCTAAAAACA 1 182 1 GCACGTCAAACCTTTTTTCAATGCATTCA 2 9 0 CGTTTACATTTGCCCTTTTACACAACAAAA 3 131 0 GAATTGACCTCCTCTTTTTACTAGTCTGAC 3 216 0 TTTTATCATTCTCCTTTTAACTTAAAGCT 4 78 0 GTTCGTAGAGTCCCCATTCATAAA 5 4 0 AGGATGGAGATCCCTTTTCATTGTTTTTAG 7 112 1 TCTCCATTCACCTCAGCAAC 7 173 0 ACCCCTCTTTTCTTCATTCATTTTGTTTTT 9 273 0 ********** MAP Score: 9.3215 Motif 6 GCATAACTGCTTTTCGTCTGAAAAAATTCATC 0 108 1 GACGCCTTCATTTTCTAATGCATTTTATTTCC 0 200 0 ACATCGTCCTTTTTTATCTGCATTAAATAAAA 1 37 1 TAATTTCATGTTTTTGGTTGAGAGGTTTTACA 1 94 1 TCTTTTTGTGTTTTTAGCTGAAAGGAGAAGAT 1 188 0 CGTCAAACCTTTTTTCAATGCATTCA 2 4 0 GTTGTCATGATTTTTAGCTGTAAGGTCAGACT 3 192 1 TTTATGAATGGGGACTCTACGA 5 0 1 TCAAACCAAGTTTTTTAATGCGACTAGCTATG 5 93 1 TATCTATAACTTTTTAACTAGAAAGCGCACGT 5 206 0 CTTGTCAATATTTTTTTTTGAAGGGGAGATGT 5 275 1 AAATAAATTGTTTTTAAATAAAATTTAAGGAA 7 51 0 AACATTATTTTTGAATGCGCTGTCAACCT 8 7 1 CAGCGGCACTTTTTTTATTACATCATCAAGTC 9 39 1 ATTCATTTTGTTTTTCTCTCTAGTCTTTTTAT 9 256 0 ***** **** * MAP Score: 8.70397 Motif 7 TGCTGATGAATTTTTTCAGACGAAAAGCAGTTATGCTCT 0 105 0 GTTACTGTCAGTATACAGGAAGAGGAGCAGGAAATAAAA 0 171 1 GCAGGAAATAAAATGCATTAGAAAATGAAGGCGTCGTGA 0 197 1 TACGTCCATATCATATTGTATGAAACGCATTCCAGATCA 1 227 1 CAGATCAAGGGGATTTAGAAAGAAGGGAATCT 1 259 1 ATACCTCATATCGTACATAACGAACAGAATGCACGTCAA 2 30 0 ACATTTGCCCTTTTACACAACAAAAAGGCATGAGCAAAA 3 117 0 AGTACGCCGTGCTTGTCAGATGACAAGTACGGTTGTATG 4 17 1 GTGTCTGTTTTTGTGCAATATAAAAAGAACCTGGGAAAT 5 150 0 GAAGGCTGAAGATTTCAGAAGGAAGTGAACCAA 6 19 1 GAGGATGACAGCGTTTGACAAAAAAAGTACAATAGTTTC 8 112 1 GCGGTGAAGAGAACCCTTCACAAAAGGGAGGTAATCATT 8 188 1 TCCGCCGCCAGATTCCGAGAATAAAAGAAAATAGGCATA 9 69 1 CAAACGCAGAAAGTCCTAAATAAAATGAATAGTTAAGTT 9 147 0 TTTAAACACAGGCTCCGCAATAAAAAGACTAGAGAGAAA 9 237 1 * * * * **** * * MAP Score: 6.05478 Motif 8 AAGGAAACCCGCTGCACAGCCTATGATAGAGCTG 0 8 1 AAAGGACTTTGTTCTCGACATCGTCCTTTTTTATCT 1 20 1 AGAGGTTTTACAGCAAGACAGCTGCCACCGAGAACA 1 114 1 TTAGTACGCCGTGCTTGTCAGATGACAAGTACGGTT 4 15 1 TTATTATATCCTGCTAGGAAGCTCTTGTCAATATTT 5 252 1 TTGAAACGACAAGGTTGACAGCGCATTCAAAAATAA 8 14 0 AAGCCTTTCCGAGCACGTCATCGAATAAAAAGTTGT 8 70 1 TTGTCGAATTGAGGATGACAGCGTTTGACAAAAAAA 8 102 1 GTTCTCTTCACCGCATGTCATCAAACAGATAGACTT 8 166 0 CTTGATCAGACGGTACGGAAGCATACTTTTTCTTTT 8 248 0 TTTATTACATCATCAAGTCCGCCGCCAGATTCCGAG 9 52 1 CATACAGTACCAGTACGGCCGCATTTTTCAGGATAA 9 104 1 AGGACTTTCTGCGTTTGACAGCATTTTCCTGAAAAC 9 169 1 * *** * **** * MAP Score: 4.5268 Motif 9 AAGGAAACCCGCTGCACAGCCTATGATAGAGCTGTA 0 1 1 CTTCATCCCGATAAAAGGAGCGGAAATTCCCAAAACCGTTAAGAG 0 64 1 TTTCGTCTGAAAAAATTCATCAGCAAACGGAACAACCCCCCTGCG 0 119 1 CAGCAAACGGAACAACCCCCCTGCGATTGAACGTTACTGTCAGTA 0 139 1 GAGGTTTTACAGCAAGACAGCTGCCACCGAGAACAGTGAGACATA 1 115 1 AGTGCCGCTGATTAGAACAGCGGCACCATGGAATAAGTT 9 4 0 ATGATGTAATAAAAAAAGTGCCGCTGATTAGAACAGCGGCACCAT 9 20 0 TTATTACATCATCAAGTCCGCCGCCAGATTCCGAGAATAAAAGAA 9 53 1 GGCATACAGTACCAGTACGGCCGCATTTTTCAGGATAATATAACC 9 102 1 * ** * ** ** * * MAP Score: 3.98308 Motif 10 TGGGAATTTCCGCTCCTTTTATCGGGATGAAGATG 0 61 0 AATCACTGATGCCTGATCGAATCAGTAACACGTTA 3 36 0 GGTGTTAGTACGCCGTGCTTGTCAGATGACAAGTA 4 11 1 TACAGCTGAAGGCTGAAGATTTCAGAAGGAAGTGA 6 12 1 ACTTTTTATTCGATGACGTGCTCGGAAAGGCTTGT 8 68 0 TTTTGTCAAACGCTGTCATCCTCAATTCGACAACT 8 100 0 TCCATGGTGCCGCTGTTCTAATCAGCGGCACTTTT 9 17 1 TCATCAAGTCCGCCGCCAGATTCCGAGAATAAAAG 9 61 1 GTACCAGTACGGCCGCATTTTTCAGGATAATATAA 9 110 1 ***** * **** MAP Score: 3.38812 Motif 11 TAAAACCTGTTACAATGGAAGACAGAACAATGCAT 0 250 1 GTTGAGAGGTTTTACAGCAAGACAGCTGCCACCGA 1 110 1 TAAATCCCCTTGATCTGGAATGCGTTTCATACAAT 1 241 0 ACGAACAGAATGCACGTCAAACCTTTTTTCAATGC 2 15 0 TGTAAACGGTTAAACTGGAAGACTTACGCCTGTGA 3 153 1 TGTACAGCTGAAGGCTGAAGATTTCAG 6 2 1 ATAAACGTGAAGCCTTTGGCTCACGT 7 1 1 TTCGATGACGTGCTCGGAAAGGCTTGTATGAAATC 8 60 0 AAGGGTTCTCTTCACCGCATGTCATCAAACAGATA 8 171 0 CGAAGCACGATGTTCCGGAAGGCATT 8 284 1 TTTGACAGCATTTTCCTGAAAACCTACAATTAAAT 9 182 1 * ** ***** * * MAP Score: 2.69626 Motif 12 AAGGAAACCCGCTGCACAGCCTATG 0 0 1 AAACCGTTAAGAGCATAACTGCTTTTCGTCTGAAA 0 96 1 AAATGCATTAGAAAATGAAGGCGTCGTGAAAGGCA 0 207 1 AGAGGTTTTACAGCAAGACAGCTGCCACCGAGAAC 1 114 1 TTGTCGAATTGAGGATGACAGCGTTTGACAAAAAA 8 102 1 TCACGAAAAAGAAAAAGTATGCTTCCGTACCGTCT 8 242 1 AAGTGCCGCTGATTAGAACAGCGGCACCATGGAAT 9 15 0 TTTATTACATCATCAAGTCCGCCGCCAGATTCCGA 9 52 1 CATACAGTACCAGTACGGCCGCATTTTTCAGGATA 9 104 1 *** * * * ** ** MAP Score: 1.87544 Motif 13 CATCTTCATCCCGATAAAAGGAGCGGAAAT 0 61 1 AAGGCAAACACCGGTAAAACCTGTTACAAT 0 236 1 TTATTTAATGCAGATAAAAAAGGACGATGT 1 37 0 CTTCTCCTTTCAGCTAAAAACACAAAAAGA 1 190 1 AAACGCATTCCAGATCAAGGGGATTTAGAA 1 249 1 TCTGACCTTACAGCTAAAAATCATGACAAC 3 192 0 AGGATTGAATCAGCTCAAACCAAGTTTTTT 5 79 1 TGTACAGCTGAAGGCTGAAGATTT 6 4 1 ********** MAP Score: 0.703808