AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_operons027_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944245626 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 ybfT 218 similar to glucosamine-6-phosphate isomerase #1 yflF 171 similar to phosphotransferase system enzyme II #2 glvA 300 6-phospho-alpha-glucosidase #3 yfiA 64 similar to hypothetical proteins #4 ptsG 238 phosphotransferase system (PTS) glucose-specific enzyme IIABC component #5 ptsH 97 histidine-containing phosphocarrier protein of the phosphotransferase system (PTS) (HPr protein) #6 pps 300 phosphoenolpyruvate synthase #7 ypqE 137 similar to phosphotransferase system enzyme II #8 pykA 42 pyruvate kinase #9 pfk 183 6-phosphofructokinase #10 crh 23 catabolite repression HPr-like protein #11 yvcL 22 similar to hypothetical proteins #12 yvcJ 24 similar to hypothetical proteins #13 yvcI 300 similar to mutator MutT protein #14 yvkC 300 similar to pyruvate,water dikinase #15 sacT 39 transcriptional antiterminator #16 ywcI 300 alternate gene name: ipa-46d #17 bglP 300 phosphotransferase system (PTS) beta-glucoside-specific enzyme IIABC component #18 yyzE 300 similar to phosphotransferase systeme enzyme II Motif 1 GGTCTCAATGAAAAAGAACGGATTGCATACAGAAT 0 22 0 AGATTATTTAAAAAGAAAGCGGGAATGACAG 1 6 0 GGTATATTTGAAAAAAAAGGGTATGAGGGGGATGG 1 144 1 GTATATAATAGAAAGAAAATGGGGGGATCTGAT 3 41 1 GTGATTGAGGGAAAAAAACGGGAAGTTCATTCTCG 4 65 1 TTGGGTGCGCAAAAGAACGAGAATGAACTTCCCGT 4 82 0 TCAGACTAGTAAAAAGAGGAGGTCAATTCTT 4 217 1 GGAAATTAAGAAAAGAACCTGGTGAAATTTCCCAG 6 124 1 GTGCAATATAAAAAGAACCTGGGAAATTTCACCAG 6 142 0 ATAATCTGGTTAAAAAAGGCGGTGGCGATA 7 5 0 CCGTAAAGAAAAGGGGAGATCTT 10 3 1 AGCCTTGAAATGAGGTGGCTAT 11 6 1 TATGGACAAAAAAAGGACACGGATAACTGGAGAAT 13 127 0 AGTCCTAAATAAAATGAATAGTTAAGTTGGTTATA 14 140 0 GCTCCGCAATAAAAAGACTAGAGAGAAAAACAAAA 14 248 1 ACTAGAGAGAAAAACAAAATGAATGAAGAAAAGAG 14 264 1 ATCCCAGTCAAAAGCAAATTGGCGGGAGAGATAAC 15 11 1 AGTTTGCGAGAAAAGAAATCGGCCGTCTTTTCTTG 16 205 1 GCTGCCTGCCAAAAAGAAGCGGAGGGATGTTTTTC 16 274 1 GTCAACACCAAAAATGAAAGCGTTGACATCTCACG 17 44 1 ACAAACAAATAAAACGACCCGTCAGGATTGTTACT 17 101 1 CATTTGATACAAAAAAAGCTGGTGAAAGGCGGCCA 17 234 1 AAGCGTAACCAAAACGAAGGGGTGGGTGAAATGTC 18 93 1 **** *** ** * MAP Score: 31.1828 Motif 2 CCGTAAAGAAAAGGGGAGATCTT 10 5 1 AAAATGAATGAAGAAAAGAGGGGTTTCAAAT 14 279 1 TAATCTGGTTAAAAAAGGCGGTGGCGATA 7 8 0 AAAAAAGCTGGTGAAAGGCGGCCACCTTTCA 17 245 1 GGACTGCTGGATGAAAGGTGGCCGCCTTTCA 17 256 0 GGTCAGACTAGTAAAAAGAGGAGGTCAATTC 4 215 1 TGTATTCATTATAAAAAGGGGGTCAATTACT 13 82 0 ATTATTTAAAAAGAAAGCGGGAATGACAG 1 8 0 GGCTGCGGCTGAGAAAACGGGCTGCTAAAAA 16 242 1 TGATTGAGGGAAAAAAACGGGAAGTTCATTC 4 66 1 CCGAGAATAAAAGAAAATAGGCATACAGTAC 14 83 1 ATATAATAGAAAGAAAATGGGGGGATCTGAT 3 43 1 TGGTATATTTGAAAAAAAAGGGTATGAGGGG 1 143 1 GATTGTTACTGCGAAAGCAGGCAAAACCTAA 17 126 1 AAGAATTGAAATGAAAATTGGAGAACCGCTT 16 64 0 AAAATTTGTTATAAAAGAAGGATACAAATCT 0 85 0 ATATTATCCTGAAAAATGCGGCCGTACTGGT 14 112 0 AGTCCCCCCATAAAAAGGAGGTATACAC 17 282 1 CTGCCTGCCAAAAAGAAGCGGAGGGATGTTT 16 275 1 TTACAGATTCGAAAATGGGGGAATTTCAT 3 8 0 TTATTTATGGACAAAAAAAGGACACGGATAA 13 136 0 CGCAGCCCGCAAGAAAAGACGGCCGATTTCT 16 218 0 ******** ** MAP Score: 21.5881 Motif 3 TTCATTCTCCCCATTCTGTATG 0 0 1 AGACCATAATACCATTTGCCCTCCCAATATGA 0 52 1 ACCCATCCCCCTCATACCCTTTT 1 158 0 CGGGAAATTTCTCATTTGCCTTATGTCTGAGA 2 162 0 ATCAGATCCCCCCATTTTCTTTCTATTATATA 3 42 0 TTTAACCGTTTACATTTGCCCTTTTACACAAC 4 135 0 TTTTATCATTCTCCTTTTAACTTAAA 5 81 0 TCTACATCTCCCCTTCAAAAAAAA 6 286 0 CCGTTATCCCTTCATTCACCACTATTTAACCA 7 86 0 TTTCTCCCTTCTCATTCACTTCAACCGTTATC 7 110 0 TTGGTTCACTTCCTTCTGAAATCTTC 8 26 0 AAAAGGGATCTCCATCCTCCCTATGAAACCTT 9 98 0 TCTCCATTCACCTCAGCAACATAT 9 169 0 CCTTTCATCCAGCAGTCCCCCCATAAAAAGGA 17 269 1 TCCCCGACATTTCACCCACCCCTTCGTTTTGG 18 101 0 CGTATAATCTCTCACTTTCCCCGACATTTCAC 18 118 0 AAGCCCCAATCACATTCTCTTCCCCGCCTACG 18 176 0 * ***** **** MAP Score: 13.9156 Motif 4 TCTACATCTCCCCTTCAAAAAAA 6 287 0 ATGAAATTCCCCCATTTTCGAAT 3 3 1 ATCAGATCCCCCCATTTTCTTTC 3 51 0 AAGATCTCCCCTTTTCTTTAC 10 12 0 TTTCATCCAGCAGTCCCCCCATAAAAAGGA 17 271 1 ACTTTCCCCGACATTTCACCCACCCCTTCG 18 107 0 AAAGGGATCTCCATCCTCCCTATGAAACCT 9 99 0 TTAACCGTTTACATTTGCCCTTTTACACAA 4 136 0 AGAAAAACATCCCTCCGCTTCTTTTT 16 284 0 TTCATTCTCCCCATTCTGTATG 0 2 1 GGCAAATGAGAAATTTCCCGCTCTATGGGA 2 174 1 GACCATAATACCATTTGCCCTCCCAATATG 0 53 1 GGGAAAAAAGAAATACCCCCGGGAAAATTG 1 89 1 AGAACCTGGGAAATTTCACCAGGTTCTTTT 6 134 0 ACCCATCCCCCTCATACCCTTT 1 159 0 GAAAGCGTTGACATCTCACGAATCTAGTGC 17 59 1 TGTAATCTTAAAGTCTCACCAACTGTGAAT 2 110 0 TGATCTATACCAATTTTCCCGGGGGTATTT 1 99 0 ATAATCTCTCACTTTCCCCGACATTTCACC 18 117 0 TTACATCATCAAGTCCGCCGCCAGATTCCG 14 56 1 ********** MAP Score: 10.1561 Motif 5 CTGTCATTCCCGCTTTCTTTTTAAATAAT 1 8 1 TCCCCCTCATACCCTTTTTTTTCAAATATAC 1 145 0 ATGAAATTCCCCCATTTTCGAATCTGTA 3 7 1 ATCAGATCCCCCCATTTTCTTTCTATTA 3 46 0 AAGAATTGACCTCCTCTTTTTACTAGTCTG 4 218 0 TATCGCCACCGCCTTTTTTAACCAGATT 7 7 1 AAGATCTCCCCTTTTCTTTACGG 10 5 0 ATAGCCACCTCATTTCAAGGCT 11 7 0 CTTTCTCCCCCCTGACTTGTCTTT 12 6 0 AAAGTAATTGACCCCCTTTTTATAATGAATA 13 80 1 ATTTGAAACCCCTCTTTTCTTCATTCATTTT 14 279 0 GGTTATCTCTCCCGCCAATTTGCTTTTGACT 15 16 0 AAACATCCCTCCGCTTCTTTTTGGCAGGCAG 16 275 0 CCGCCTTTCACCAGCTTTTTTTGTATCAAAT 17 235 0 ATTTCACCCACCCCTTCGTTTTGGTTACGCT 18 94 0 ****** **** MAP Score: 8.68891 Motif 6 GTATGCAATCCGTTCTTTTTCATTGAGACCA 0 27 1 AGATTTGTATCCTTCTTTTATAACAAATTTT 0 85 1 CGGGGGTATTTCTTTTTTCCCAGGTCCGTGT 1 79 0 CCCCTCATACCCTTTTTTTTCAAATATACCA 1 143 0 CTTATGAAAAGGTTCTTTTGTACGATTCGGA 2 52 0 TGAGAGATTTGGTTTTTTTACCTTTTTTGTA 2 136 0 CCCCCATTTTCTTTCTATTATATACAATTAC 3 35 0 ATGAACTTCCCGTTTTTTTCCCTCAATCACT 4 64 0 AGTTCATTCTCGTTCTTTTGCGCACCCAATT 4 88 1 CCTAAAGTTGGGTTCTTTTTGAACTTACTTG 6 38 0 AATTTCACCAGGTTCTTTTCTTAATTTCCAT 6 122 0 AAATTTCCCAGGTTCTTTTTATATTGCACAA 6 148 1 ATCGCCACCGCCTTTTTTAACCAGATTATGC 7 11 1 CTTTGGCTCACGTTTATTTTTTGTGACATTC 9 23 1 ATGGAGATCCCTTTTCATTGTTTTTAGGGCA 9 115 1 AAGATCTCCCCTTTTCTTTACGG 10 2 0 TTATCCGTGTCCTTTTTTTGTCCATAAATAA 13 136 1 CTGGAATTCTCTTTTATTTATGGACAAAAAA 13 149 0 ATCAGCGGCACTTTTTTTATTACATCATCAA 14 37 1 TCTCTCTAGTCTTTTTATTGCGGAGCCTGTG 14 243 0 AAGACGGCCGATTTCTTTTCTCGCAAACTAG 16 203 0 CCTGACGGGTCGTTTTATTTGTTTGTAGGTA 17 96 0 GTGTCATTTAGGTTTTTTTATTCTCTTTTAG 17 191 1 CCTTTCACCAGCTTTTTTTGTATCAAATGCT 17 232 0 ********* * MAP Score: 4.27259 Motif 7 CTGTCATTCCCGCTTTCTTTTTAAATAATCT 1 9 1 ATCAGATCCCCCCATTTTCTTTCTATTATA 3 44 0 AATCACACTACGTGCGCTTTCTAGTTAAAAAG 6 197 1 TATCGCCACCGCCTTTTTTAACCAGAT 7 5 1 ATAAAGTAATTGACCCCCTTTTTATAATGAAT 13 78 1 TCCAGTTATCCGTGTCCTTTTTTTGTCCATAA 13 131 1 GTTCTAATCAGCGGCACTTTTTTTATTACATC 14 31 1 AGTACCAGTACGGCCGCATTTTTCAGGATAAT 14 109 1 ATTTGAAACCCCTCTTTTCTTCATTCATTT 14 280 0 GAAAAGAAATCGGCCGTCTTTTCTTGCGGGCT 16 214 1 AAACATCCCTCCGCTTCTTTTTGGCAGGCAGC 16 274 0 CCGCCTTTCACCAGCTTTTTTTGTATCAAATG 17 234 0 TGGTGAAAGGCGGCCACCTTTCATCCAGCAGT 17 253 1 GTGTATACCTCCTTTTTATGGGGGGACTG 17 281 0 ATTTCACCCACCCCTTCGTTTTGGTTACGCTT 18 93 0 ** ** ****** MAP Score: 3.41312 Motif 8 GTCTCAATGAAAAAGAACGGATTGCATACA 0 26 0 TAGATTATTTAAAAAGAAAGCGGGAATGAC 1 12 0 GGTATATTTGAAAAAAAAGGGTATGAGGGG 1 144 1 CTTTAAGATTACAAAAAAGGTAAAAAAACC 2 127 1 TGATTGAGGGAAAAAAACGGGAAGTTCATT 4 66 1 CCTTTTACACAACAAAAAGGCATGAGCAAA 4 118 0 TTGTCATCTGACAAGCACGGCGTACTAACA 5 13 0 TTGTCAGATGACAAGTACGGTTGTATGATA 5 29 1 TTTATATTGCACAAAAACAGACACGGTGAT 6 165 1 CCGTAAAGAAAAGGGGAGATCTT 10 3 1 TTATTTATGGACAAAAAAAGGACACGGATA 13 137 0 TTCCGAGAATAAAAGAAAATAGGCATACAG 14 81 1 GGCATACAGTACCAGTACGGCCGCATTTTT 14 102 1 GCCGCAGCCCGCAAGAAAAGACGGCCGATT 16 221 0 AGCATTTGATACAAAAAAAGCTGGTGAAAG 17 232 1 ********** MAP Score: 2.73547 Motif 9 GTCTATCTCTTTGAGGGGGTGTCAC 0 203 1 CAACTGTCTTAAAAATAGGAAACACACGGA 1 56 1 AAAAAAGGGTATGAGGGGGATGGGT 1 156 1 TTTTTTCCCATAGAGCGGGAAATTTCTCAT 2 179 0 GTAAACGTTATCAAGGAGGTCGTCAT 2 284 1 TCAGACTAGTAAAAAGAGGAGGTCAATTCT 4 217 1 ATATTTTTTTTTGAAGGGGAGATGTAGA 6 282 1 ATCTGGTTAAAAAAGGCGGTGGCGATA 7 7 0 AAAGACAAGTCAGGGGGGAGAAAG 12 9 1 ATTCATTATAAAAAGGGGGTCAATTACTTT 13 80 0 GGGAGGCATCTTGAAGCGGTATAATAAAGA 13 257 1 TGAATGAAGAAAAGAGGGGTTTCAAAT 14 283 1 TATAAAGTTTTCAAAGCGGTTCTCCAATTT 16 51 1 GCCTGCCAAAAAGAAGCGGAGGGATGTTTT 16 277 1 TCCCCCCATAAAAAGGAGGTATACAC 17 284 1 CGTAACCAAAACGAAGGGGTGGGTGAAATG 18 96 1 TCGATTGGTGCTGAAGCGGTCTACCCCTAA 18 227 1 ********** MAP Score: 1.24562 Motif 10 GCAATCCGTTCTTTTTCATTGAGACCATAA 0 31 1 ATTCCCGCTTTCTTTTTAAATAATCTAGAT 1 15 1 CCCCTCATACCCTTTTTTTTCAAATATACC 1 144 0 TACAAAAGAACCTTTTCATAAGAATTGGAA 2 61 1 CCCCCCATTTTCTTTCTATTATATACAATT 3 37 0 TTCACCAGGTTCTTTTCTTAATTTCCATAG 6 120 0 TTTCCCAGGTTCTTTTTATATTGCACAAAA 6 151 1 GTATTTTCTCCCTTCTCATTCACTTCAACC 7 116 0 GATGGAGATCCCTTTTCATTGTTTTTAGGG 9 114 1 AAGATCTCCCCTTTTCTTTACGG 10 4 0 TAATTGACCCCCTTTTTATAATGAATACAC 13 84 1 AACTGGAATTCTCTTTTATTTATGGACAAA 13 152 0 ATTGTCAATGTCTCTTCATTGTGGGAGGCA 13 235 1 CCTGTCATCGTCTCTTTATTATACCGCTTC 13 269 0 TCAGCGGCACTTTTTTTATTACATCATCAA 14 38 1 TTCTCTCTAGTCTTTTTATTGCGGAGCCTG 14 245 0 AAACCCCTCTTTTCTTCATTCATTTTGTTT 14 275 0 AAATCGGCCGTCTTTTCTTGCGGGCTGCGG 16 220 1 GTCATTTAGGTTTTTTTATTCTCTTTTAGG 17 193 1 CTTTCACCAGCTTTTTTTGTATCAAATGCT 17 232 0 GTGTATACCTCCTTTTTATGGGGGGACTGC 17 280 0 TTTCACCCACCCCTTCGTTTTGGTTACGCT 18 94 0 ********** MAP Score: 0.495854