AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_operons027_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944245641 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 ybfT 218 similar to glucosamine-6-phosphate isomerase #1 yflF 171 similar to phosphotransferase system enzyme II #2 glvA 300 6-phospho-alpha-glucosidase #3 yfiA 64 similar to hypothetical proteins #4 ykvY 300 similar to Xaa-Pro dipeptidase #5 ykvZ 281 similar to transcriptional regulator (LacI family) #6 glcT 62 transcriptional antiterminator (BglG family) #7 ptsG 238 phosphotransferase system (PTS) glucose-specific enzyme IIABC component #8 ptsH 97 histidine-containing phosphocarrier protein of the phosphotransferase system (PTS) (HPr protein) #9 pps 300 phosphoenolpyruvate synthase #10 ypqE 137 similar to phosphotransferase system enzyme II #11 pykA 42 pyruvate kinase #12 pfk 183 6-phosphofructokinase #13 yttI 300 similar to acetyl-CoA carboxylase #14 crh 23 catabolite repression HPr-like protein #15 yvcL 22 similar to hypothetical proteins #16 yvcJ 24 similar to hypothetical proteins #17 yvcI 300 similar to mutator MutT protein #18 yvkC 300 similar to pyruvate,water dikinase #19 sacT 39 transcriptional antiterminator #20 ywcI 300 alternate gene name: ipa-46d #21 bglP 300 phosphotransferase system (PTS) beta-glucoside-specific enzyme IIABC component #22 yyzE 300 similar to phosphotransferase systeme enzyme II Motif 1 ATTCTGTATGCAATCCGTTCTTTTTCATTGAGACC 0 22 1 CTGTCATTCCCGCTTTCTTTTTAAATAATCT 1 6 1 CCATCCCCCTCATACCCTTTTTTTTCAAATATACC 1 144 0 ATCAGATCCCCCCATTTTCTTTCTATTATATAC 3 41 0 TTGCCTTTCACGACGCCTTCATTTTCTAATGCATT 4 208 0 ACTTTGTTCTCGACATCGTCCTTTTTTATCTGCAT 5 25 1 GAAACCCATGTGATCTTCTCCTTTCAGCTAAAAAC 5 176 1 CGAGAATGAACTTCCCGTTTTTTTCCCTCAATCAC 7 65 0 ACGGGAAGTTCATTCTCGTTCTTTTGCGCACCCAA 7 82 1 AAGAATTGACCTCCTCTTTTTACTAGTCTGA 7 217 0 CTGGGAAATTTCACCAGGTTCTTTTCTTAATTTCC 9 124 0 CTGGTGAAATTTCCCAGGTTCTTTTTATATTGCAC 9 142 1 TATCGCCACCGCCTTTTTTAACCAGATTAT 10 5 1 AATGCGCTGTCAACCTTGTCGTTTCAACACCTTAT 13 23 1 GGTACGGAAGCATACTTTTTCTTTTTCGTGAATAT 13 238 0 AAGATCTCCCCTTTTCTTTACGG 14 3 0 ATAGCCACCTCATTTCAAGGCT 15 6 0 ATTCTCCAGTTATCCGTGTCCTTTTTTTGTCCATA 17 127 1 TATAACCAACTTAACTATTCATTTTATTTAGGACT 18 140 1 TTTTGTTTTTCTCTCTAGTCTTTTTATTGCGGAGC 18 248 0 CTCTTTTCTTCATTCATTTTGTTTTTCTCTCTAGT 18 264 0 GTTATCTCTCCCGCCAATTTGCTTTTGACTGGGAT 19 11 0 CAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACT 20 205 0 GAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC 20 274 0 CGTGAGATGTCAACGCTTTCATTTTTGGTGTTGAC 21 44 0 AGTAACAATCCTGACGGGTCGTTTTATTTGTTTGT 21 101 0 TGGCCGCCTTTCACCAGCTTTTTTTGTATCAAATG 21 234 0 GACATTTCACCCACCCCTTCGTTTTGGTTACGCTT 22 93 0 * ** *** **** MAP Score: 34.0127 Motif 2 TATTCATTATAAAAAGGGGGTCAATTACTT 17 81 0 GTCCCCCCATAAAAAGGAGGTATACAC 21 283 1 CCGTAAAGAAAAGGGGAGATCTT 14 6 1 TTATTTAAAAAGAAAGCGGGAATGACAG 1 8 0 TACAGATTCGAAAATGGGGGAATTTCAT 3 8 0 TAATAGAAAGAAAATGGGGGGATCTGAT 3 46 1 AAATGAATGAAGAAAAGAGGGGTTTCAAAT 18 280 1 AAGGGGATTTAGAAAGAAGGGAATCT 5 265 1 TGTTTTTAGCTGAAAGGAGAAGATCACATG 5 182 0 AATGCAGATAAAAAAGGACGATGTCGAGAA 5 31 0 AATCTGGTTAAAAAAGGCGGTGGCGATA 10 8 0 AAAAAGCTGGTGAAAGGCGGCCACCTTTCA 21 246 1 GTCAGACTAGTAAAAAGAGGAGGTCAATTC 7 216 1 AGCTTTAAGTTAAAAGGAGAATGATAAAA 8 78 1 GATTGCATACAGAATGGGGAGAATGAA 0 7 0 AACCCTTCACAAAAGGGAGGTAATCATTTG 13 199 1 AAATTTGTTATAAAAGAAGGATACAAATCT 0 85 0 GACTGCTGGATGAAAGGTGGCCGCCTTTCA 21 256 0 GCTGCGGCTGAGAAAACGGGCTGCTAAAAA 20 243 1 TTTATGAATGGGGACTCTACGAAC 9 4 1 GCAGCCCGCAAGAAAAGACGGCCGATTTCT 20 218 0 AATGCATTAGAAAATGAAGGCGTCGTGAAA 4 208 1 GTTGCTGAGGTGAATGGAGA 12 173 1 GATTGAGGGAAAAAAACGGGAAGTTCATTC 7 67 1 TAAATAGTGGTGAATGAAGGGATAACGGTT 10 90 1 GTATATTTGAAAAAAAAGGGTATGAGGGGG 1 145 1 CTAAAAACAATGAAAAGGGATCTCCATCCT 12 112 0 GAAGTGAATGAGAAGGGAGAAAATACA 10 120 1 TTATGGACAAAAAAAGGACACGGATAACTG 17 133 0 TGAATGCATTGAAAAAAGGTTTGACGTGC 6 9 1 GGTCTCAATGAAAAAGAACGGATTGCATAC 0 27 0 TTTTGTTGTGTAAAAGGGCAAATGTAAACG 7 131 1 TTTGATACAAAAAAAGCTGGTGAAAGGCGG 21 236 1 CATAACGAACAGAATGCACGTCAAACCTTT 6 24 0 CTTTTTAACTAGAAAGCGCACGTAGTGTGA 9 199 0 TAACCCAATTAAAATGAAGAAACCCATGTG 5 158 1 ********** MAP Score: 28.8718 Motif 3 GCACAGCCTATGATAGAGCTGTAATAATAAAAGC 4 23 1 CATTAGAAAATGAAGGCGTCGTGAAAGGCAAACA 4 212 1 TGAATGCATTGAAAAAAGGTTTGA 6 0 1 CAGGCATCAGTGATTGAGGGAAAAAAACGGGAAG 7 56 1 CTTACGCCTGTGAATTCGTTGTCATGATTTTTAG 7 175 1 GAAGCAAAATTGAAAGTGTGGTTAAATAGTGGTG 10 68 1 TAAATAGTGGTGAATGAAGGGATAACGGTTGAAG 10 90 1 ACGGTTGAAGTGAATGAGAAGGGAGAAAATACA 10 114 1 ACATTATTTTTGAATGCGCTGTCAACCTTGTCGT 13 11 1 TTAATTCAGATGATTTTGCTGTAACTGGAATTCT 17 170 0 TGTTGAAAGCTGAAAGAATTGAAATGAAAATTGG 20 74 0 TCATGAGTTTTGCTAGAGCCGCTAGTTTGCGAGA 20 182 1 ACACCAAAAATGAAAGCGTTGACATCTCACGAAT 21 48 1 AGGTTTTGCCTGCTTTCGCAGTAACAATCCTGAC 21 121 0 ACAATTATAATGAAAGCGTAACCAAAACGAAGGG 22 80 1 AATCGAAGTCTGGTAGCGCAGCGAGAAGCCCCAA 22 199 0 AAGGATATCGTGAAATCGATGCTACCATCCCGGC 22 261 1 ******** * * MAP Score: 11.2513 Motif 4 GAAAATTTGTTATAAAAGAAGGATACAAATC 0 86 0 CTAGATTATTTAAAAAGAAAGCGGGAATGAC 1 12 0 ACGGACCTGGGAAAAAAGAAATACCCCCGGG 1 81 1 TGGTATATTTGAAAAAAAAGGGTATGAGGGG 1 143 1 ATCCGAATCGTACAAAAGAACCTTTTCATAA 2 51 1 ACTTTAAGATTACAAAAAAGGTAAAAAAACC 2 126 1 TCTTCATCCCGATAAAAGGAGCGGAAATTCC 4 63 1 TAGAAATAAAAAAGGACTTTGTTCTCG 5 6 1 TTAATGCAGATAAAAAAGGACGATGTCGAGA 5 32 0 TGAATGCATTGAAAAAAGGTTTGACGTGC 6 8 1 CCTTTTACACAACAAAAAGGCATGAGCAAAA 7 117 0 AGGTCAGACTAGTAAAAAGAGGAGGTCAATT 7 214 1 AAAGCTTTAAGTTAAAAGGAGAATGATAAAA 8 76 1 TATGGAAATTAAGAAAAGAACCTGGTGAAAT 9 121 1 TTTGTGCAATATAAAAAGAACCTGGGAAATT 9 149 0 ACATCTCCCCTTCAAAAAAAAATATTGACAA 9 276 0 CATAATCTGGTTAAAAAAGGCGGTGGCGATA 10 10 0 GACAGCGTTTGACAAAAAAAGTACAATAGTT 13 118 1 ATATTCACGAAAAAGAAAAAGTATGCTTCCG 13 238 1 CCGTAAAGAAAAGGGGAGATCTT 14 5 1 TGTATTCATTATAAAAAGGGGGTCAATTACT 17 82 0 ATTTATGGACAAAAAAAGGACACGGATAACT 17 134 0 TTTGTCCATAAATAAAAGAGAATTCCAGTTA 17 152 1 TTGATGATGTAATAAAAAAAGTGCCGCTGAT 18 37 0 AGATTCCGAGAATAAAAGAAAATAGGCATAC 18 78 1 CAGGCTCCGCAATAAAAAGACTAGAGAGAAA 18 245 1 AAAAAGACTAGAGAGAAAAACAAAATGAATG 18 258 1 AAAATGAATGAAGAAAAGAGGGGTTTCAAAT 18 279 1 GCTAGTTTGCGAGAAAAGAAATCGGCCGTCT 20 202 1 GGCTGCGGCTGAGAAAACGGGCTGCTAAAAA 20 242 1 CCTACAAACAAATAAAACGACCCGTCAGGAT 21 98 1 CCTAAAAGAGAATAAAAAAACCTAAATGACA 21 192 0 CAGTCCCCCCATAAAAAGGAGGTATACAC 21 281 1 ** ******** MAP Score: 10.5981 Motif 5 CAATCCGTTCTTTTTCATTGAGACCATAATA 0 32 1 GATGGTGGGCTTTTATTATTACAGCTCTATC 4 34 0 GACGCCTTCATTTTCTAATGCATTTTATTTC 4 201 0 AACAAAGTCCTTTTTTATTTCTA 5 2 0 ATTTGATGATTTTTTTATTTAATGCAGATAA 5 50 0 CGTCAAACCTTTTTTCAATGCATTCA 6 5 0 TCAAACCAAGTTTTTTAATGCGACTAGCTAT 9 93 1 CCCAGGTTCTTTTTATATTGCACAAAAACAG 9 154 1 CTTGTCAATATTTTTTTTTGAAGGGGAGATG 9 275 1 GAAGCATACTTTTTCTTTTTCGTGAATATAT 13 236 0 TTGACCCCCTTTTTATAATGAATACACTTTT 17 87 1 TCAGCGGCACTTTTTTTATTACATCATCAAG 18 38 1 TCTTCATTCATTTTGTTTTTCTCTCTAGTCT 18 262 0 GTCATTTAGGTTTTTTTATTCTCTTTTAGGA 21 193 1 **** ****** MAP Score: 7.86801 Motif 6 TATTTGAAAAAAAAGGGTATGAGGGGGATGGGT 1 148 1 GAACCTTTTCATAAGAATTGGAAGGGCGTATATTCACT 2 68 1 TTGGGTGCGCAAAAGAACGAGAATGAACTTCCCGTTTT 7 79 0 ATAACGGTTGAAGTGAATGAGAAGGGAGAAAATACA 10 111 1 TCATCGAATAAAAAGTTGTCGAATTGAGGATGACAGCG 13 87 1 CGGTATAATAAAGAGACGATGACAGGACGAAGGTTAG 17 273 1 ACTAGAGAGAAAAACAAAATGAATGAAGAAAAGAGGGG 18 264 1 CTGCCTGCCAAAAAGAAGCGGAGGGATGTTTTTCT 20 275 1 TTGATACAAAAAAAGCTGGTGAAAGGCGGCCACCTTTC 21 237 1 GTAGGCGGGGAAGAGAATGTGATTGGGGCTTCTCGCTG 22 177 1 TCGCTGCGCTACCAGACTTCGATTGGTGCTGAAGCGGT 22 209 1 ***** ** ** * MAP Score: 2.7933 Motif 7 TTATTTAAAAAGAAAGCGGGAATGACAG 1 3 0 GTATATTTGAAAAAAAAGGGTATGAGGGGGATGGG 1 145 1 ATATAATAGAAAGAAAATGGGGGGATCTGAT 3 43 1 TGATTGAGGGAAAAAAACGGGAAGTTCATTCTCGT 7 66 1 TGGGTGCGCAAAAGAACGAGAATGAACTTCCCGTT 7 81 0 CCTTTTACACAACAAAAAGGCATGAGCAAAATTGG 7 113 0 TGCAATATAAAAAGAACCTGGGAAATTTCACCAGG 9 141 0 GGAATGTCACAAAAAATAAACGTGAGCCAAAGGCT 12 20 0 CCGTAAAGAAAAGGGGAGATCTT 14 4 1 ATATGCTGTAAAATAGAAGAAAAGATTGTCAATGT 17 211 1 CTCCGCAATAAAAAGACTAGAGAGAAAAACAAAAT 18 249 1 CTAGAGAGAAAAACAAAATGAATGAAGAAAAGAGG 18 265 1 CCCAGTCAAAAGCAAATTGGCGGGAGAGATAACCT 19 13 1 TTGAAAGCTGAAAGAATTGAAATGAAAATTGGAGA 20 71 0 TGCCTGCCAAAAAGAAGCGGAGGGATGTTTTTCT 20 276 1 AACCTAAATGACACAGATTGCGAGAGTCTCCTCCT 21 170 0 TTTGATACAAAAAAAGCTGGTGAAAGGCGGCCACC 21 236 1 GCGTAACCAAAACGAAGGGGTGGGTGAAATGTCGG 22 95 1 *** ** ** * ** MAP Score: 2.6258 Motif 8 TTCATTCTCCCCATTCTGTATGCA 0 1 1 GACCATAATACCATTTGCCCTCCCAATATGAAA 0 53 1 CTGTCATTCCCGCTTTCTTTTTAAAT 1 3 1 ACCCATCCCCCTCATACCCTTTTTT 1 156 0 GGGAAATTTCTCATTTGCCTTATGTCTGAGAGA 2 160 0 TCAGATCCCCCCATTTTCTTTCTATTATATACA 3 40 0 TAAAAGCCCACCATCTTCATCCCGATAAAAGGA 4 50 1 AGATTCCCTTCTTTCTAAATCCC 5 268 0 AACGGGAAGTTCATTCTCGTTCTTTTGCGCACC 7 81 1 TTAACCGTTTACATTTGCCCTTTTACACAACAA 7 133 0 AAGAATTGACCTCCTCTTTTTACTAGTCTGA 7 217 0 TTTTATCATTCTCCTTTTAACTTAAAGC 8 79 0 AAAGGGATCTCCATCCTCCCTATGAAACCTTAC 12 96 0 GGATGGAGATCCCTTTTCATTGTTTTTAGGGCA 12 113 1 ACGGAAGCATACTTTTTCTTTTTCGTGAATATA 13 237 0 AAGATCTCCCCTTTTCTTTACGG 14 2 0 ATCTCTCCCGCCAATTTGCTTTTGACTGGGATT 19 10 0 AGAAAAACATCCCTCCGCTTCTTTTTGGCAGGC 20 277 0 TGCACCTGCACCATTTAGGTTTTGCCTGCTTTC 21 138 0 GCAATCTGTGTCATTTAGGTTTTTTTATTCTCT 21 184 1 GCGAGAAGCCCCAATCACATTCTCTTCCCCGCC 22 180 0 ****** * ** * MAP Score: 0.523515 Motif 9 TGCATACAGAATGGGGAGAATGAA 0 0 0 AATCTTTCATATTGGGAGGGCAAATGGTATTATG 0 56 0 AATTTGTTATAAAAGAAGGATACAAATCTTTCAT 0 80 0 GATTATTTAAAAAGAAAGCGGGAATGACAG 1 6 0 TTTGAAAAAAAAGGGTATGAGGGGGATGGGT 1 150 1 TTTCATAAGAATTGGAAGGGCGTATATTCACTTA 2 74 1 TCATCCCGATAAAAGGAGCGGAAATTCCCAAAAC 4 66 1 AGTATACAGGAAGAGGAGCAGGAAATAAAATGCA 4 180 1 ATGCATTGCAAATGGCAGGGAGGAACAAGAA 4 279 1 CATGAGCAAAATTGGGTGCGCAAAAGAACGAGAA 7 94 0 GTTGAAGTGAATGAGAAGGGAGAAAATACA 10 117 1 GTAAGGTTTCATAGGGAGGATGGAGATCCCTTTT 12 96 1 CTGCCTGCCAAAAAGAAGCGGAGGGATGTTTTTC 20 275 1 AACCAAAACGAAGGGGTGGGTGAAATGTCGGGGA 22 99 1 ** ** **** * * MAP Score: 0.467702