AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_operons044_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944246797
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	spoVG	193	spoVG
#1	yacA	103	similar to cell-cycle protein
#2	ftsH	97	cell-division protein and general stress protein (class III heat-shock)
#3	yacB	194	similar to hypothetical proteins
#4	pabB	166	para-aminobenzoate synthase (subunit A)
#5	yjoB	148	similar to cell-division protein FtsH homolog
#6	spoVK	300	alternate gene name: spoVJ; disruption leads to the production of immature spores (stage V sporulation)

Motif 1
AAATATTTTAAAAACGAGCAGGATTTCAGAAA	0	115	1
TGTCCTCCTCACAATGAGCAGGTATTTTAAAG	1	79	0
TTCTTTCTAAAAAAACTGCCGGCTGACGCTGG	3	16	1
ATTTACATAAAAAAACTGCCAGCGTCAGCCGG	3	34	0
GGATGATTGTAAAAGCCGCAGCTGAGCCAATC	3	66	0
GATTTGTTTACAAATGAGCCGCTGATCGTGTA	3	110	1
   AAAAAGCCAAAACTCCCGGTTCGCCGGGA	4	7	1
CGAAATATAAAAAAACTCCCGGCGAACCGGGA	4	23	0
GTTTCGTACAAAAATCAGCCCGTTGTATGAAA	6	47	1
          **** * *****
MAP Score: 13.4278

Motif 2
       TAAGAAAAGTGATTCTGGGAGAGCCGG	0	3	1
AAGGTAAATAAAAAAGTGATCCCGGCTCTCCCAG	0	24	0
GAATGTTTGTAAAAAGTAAAGTAGAGAAACTATT	3	152	1
GTTTTTAATTGTAAAGCAATGTTGTTAGTGAAAA	4	111	0
TACAATTAAAAACAAGTAAAAAAGAAAATAGAGG	4	132	1
CTCCATATGTAAAAATAAATGGTGCAATGAAATC	5	19	1
ACGTTCACAAAACATGAAATGGAGTATAAAC   	5	127	1
CCGTTGTATGAAAAAGAAATAATGAGAAAGAAGC	6	66	1
CCGTGAATACAATAAGAAATAAAGTATTTCTCGG	6	161	1
TTTCGGGAACAATAAGGAATCCTGCGCTTTCCCG	6	192	0
TTGTTCCCGAAAAAAGCAATTGTTTCGACACATG	6	214	1
          ****** ***   *
MAP Score: 10.9735

Motif 3
CCCGGCTCTCCCAGAATCACTTTTCTTA        	0	2	0
TCTGGGAGAGCCGGGATCACTTTTTTATTTACCTTA	0	23	1
TATTGTTTGTATTGGAATGATTTTCTATGGTACTAT	2	34	1
CCAGCGTCAGCCGGCAGTTTTTTTAGAAAGAAAGCG	3	12	0
CCGGCTGACGCTGGCAGTTTTTTTATGTAAATGATT	3	34	1
TCATCCAATTCTGGTATCGATTTGTTTACAAATGAG	3	92	1
TCCCGGTTCGCCGGGAGTTTTTTTATATTTCGTGCA	4	23	1
CCCTAAGATACCTGAAGTGTTTTTCTT         	6	1	0
TATCTTAGGGCGGGTAATACGTTTCGTACAAAAATC	6	27	1
TGCGCTTTCCCGAGAAATACTTTATTTCTTATTGTA	6	168	0
          * ** * *  **** *
MAP Score: 10.4687

Motif 4
CGAAACAATTGCTTTTTTCGGGAACAATAAGG	6	209	0
GTATTGGAATGATTTTCTATGGTACTATTGAA	2	42	1
GACGCTGGCAGTTTTTTTATGTAAATGATTGG	3	40	1
TCAATTCCACGATTTTTTCTGAAATCCTGCTC	0	130	0
ATACACTAATGCTTTTATATAGGGAAAAGGTG	0	161	1
TCAGCCGGCAGTTTTTTTAGAAAGAAAGCGAA	3	10	0
AAACACTTCAGGTATCTTAGGGCGGGTAATAC	6	15	1
GATCGTGTATGGTATTGTAGAATGTTTGTAAA	3	133	1
TGCGACGAATGTTATTCTTGGAAGAGAAATTC	4	75	1
AAGAAATAAAGTATTTCTCGGGAAAGCGCAGG	6	174	1
TTCGCCGGGAGTTTTTTTATATTTCGTGCATC	4	29	1
TTCCGAGATGGTTATTGTTTGTATTGGAATGA	2	22	1
ACAATGAGCAGGTATTTTAAAGATATTCATAT	1	69	0
          * **** *****
MAP Score: 6.86298

Motif 5
GTTTTTAAAATATTTTTTGAAAAAATAGGATATAGTTAC	0	91	0
CTAATGCTTTTATATAGGGAAAAGGTGGTGAACTACT  	0	166	1
CAGCCGGCAGTTTTTTTAGAAAGAAAGCGAA        	3	2	0
GCTGGCAGTTTTTTTATGTAAATGATTGGCTCAGCTGCG	3	43	1
CTGGTATCGATTTGTTTACAAATGAGCCGCTGATCGTGT	3	102	1
TATTGTAGAATGTTTGTAAAAAGTAAAGTAGAGAAACTA	3	145	1
TTTACTTGTTTTTAATTGTAAAGCAATGTTGTTAGTGAA	4	113	0
TGATCTCCTCCATATGTAAAAATAAATGGTGCAATGAAA	5	12	1
AAATAAAGTATTTCTCGGGAAAGCGCAGGATTCCTTATT	6	177	1
AAAAAGCAATTGTTTCGACACATGATAGGCGTTTGTCAC	6	224	1
          * * * *  ***  *  **
MAP Score: 6.47565

Motif 6
ATTCTGGTATCGATTTGTTTACAAATGAGCCGCTG	3	99	1
ATCAATTCCACGATTTTTTCTGAAATCCTGCTCGT	0	128	0
TAACTATATCCTATTTTTTCAAAAAATATTTTAAA	0	92	1
CGTCAGCCGGCAGTTTTTTTAGAAAGAAAGCGAA 	3	9	0
TTCTGAAATCCTGCTCGTTTTTAAAATATTTTTTG	0	111	0
CAAAAATCAGCCCGTTGTATGAAAAAGAAATAATG	6	55	1
CGCAGGATTCCTTATTGTTCCCGAAAAAAGCAATT	6	200	1
GCGGGTAATACGTTTCGTACAAAAATCAGCCCGTT	6	36	1
AAGAGAAATTCACTTTTTTCACTAACAACATTGCT	4	96	1
TTTCATTGCACCATTTATTTTTACATATGGAGGAG	5	16	0
GGCTCAGCTGCGGCTTTTACAATCATCCAATTCTG	3	70	1
          *   ******  ***
MAP Score: 5.79846

Motif 7
TTTAAAATATTTTTTGAAAAAATAGGATATAGTTACACAATTA	0	84	0
TTTCAAAAAATATTTTAAAAACGAGCAGGATTTCAGAAAAAAT	0	108	1
AATGAGCAGGTATTTTAAAGATATTCATATCCTAACACTTTCA	1	56	0
AGATGGTTATTGTTTGTATTGGAATGATTTTCTATGGTACTAT	2	27	1
ACGCTGGCAGTTTTTTTATGTAAATGATTGGCTCAGCTGCGGC	3	41	1
GCCGGGAGTTTTTTTATATTTCGTGCATCAAATATGCCATGTC	4	32	1
AGAAATTCACTTTTTTCACTAACAACATTGCTTTACAATTAAA	4	99	1
GCACCATTTATTTTTACATATGGAGGAGATCATA         	5	1	0
          * ***  *     * ***    *
MAP Score: 5.77313

Motif 8
TTGTGTAACTATATCCTATTTTTTCAAAAAATA	0	87	1
CGTGGAATTGATACACTAATGCTTTTATATAGG	0	151	1
GGCTTTTACAATCATCCAATTCTGGTATCGATT	3	81	1
CGTGCATCAAATATGCCATGTCTGCGACGAATG	4	53	1
GTTAGTGAAAAAAGTGAATTTCTCTTCCAAGAA	4	89	0
ATAACCGTTGATATAGGATTTCATTGCACCATT	5	36	0
GGATGAAACAAAATGCTATGTCAATCGTATATA	5	92	1
      GTTTATACTCCATTTCATGTTTTGTGA	5	131	0
CAAAATGATTAAAAACAAAATCTCATGGTTTGT	6	117	1
ACAATAAGAAATAAAGTATTTCTCGGGAAAGCG	6	169	1
TGTTCCCGAAAAAAGCAATTGTTTCGACACATG	6	215	1
          ***  * ******
MAP Score: 0.933281