AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_operons045_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944246836 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 yhdP 60 similar to hemolysin #1 yhdQ 156 similar to transcriptional regulator (MerR family) #2 yhdT 76 similar to hemolysin #3 ylaK 154 similar to phosphate starvation inducible protein #4 comGB 52 probably part of the DNA transport machinery #5 comGA 300 late competence gene #6 yqfF 78 yqfF #7 yqfC 56 yqfC #8 yqfB 24 yqfB #9 yqfA 21 yqfA #10 yqeZ 130 yqeZ #11 yrkA 300 similar to hemolysin-like #12 yugS 27 similar to hypothetical proteins from B. subtilis #13 yugP 300 yugP Motif 1 CCTTCATTCTCATTGCTAGAGTGAAGGTTCTAA 0 37 1 ATTGAAGTAACATAGGAAGATAGAATTTTCAAAT 1 31 0 TTGTGGAATTCATCATCTGATTGAAGTAACATAG 1 50 0 GACTCCTTATCCTTTGTTGAGAGGATAGGGTTAA 2 52 1 TCCTGCTTCTCTTTTGATGAAAAAGGTGAATGCC 3 97 0 TTAGGCGATCTTTCCGTTGAGAAAGATACTGGTC 5 44 1 AAGTCTTTTTTCTTGCCAGAAAGAATTGGTTTTT 5 184 1 TGTGAGATGTTATATGCTGAAAAACCAATTCTTT 5 203 0 TTTTCTACAATATGCGTTGAAAGGAGAGGGAATC 5 273 1 ATCTCATGTGTATGATTTGAAAGGAGGTTCTAAC 7 13 0 AAATCATACACATGAGATGAAAGGGGGTTCTTTT 7 29 1 CAGCGTTCTCCCTTCTTAGAGAGA 8 0 0 AAAAGGACATCTTTCTAAGAGAGATGTCTTTTTT 10 19 1 ACATTTGTTACGTATGAAGAGAAGGCACTTATTA 10 80 1 CATCTTTTTCCGTATGGAGAGTGGTTCCCATAGT 11 151 0 AAACCACGATCGTTCTTTGAAAGATC 13 2 0 CTCCTGGCTTCATTTTCTGAAAGAACTGGCCGGC 13 118 1 AGGCCTGTTCTTTTTGCTGATTGGATTGTGTGCT 13 178 1 * * * ******* MAP Score: 18.2487 Motif 2 CACAAGTTTATTGTTTTTTTTAGACCGGAAT 1 90 0 AAGTTCTTCCTGCTTCTCTTTTGATGAAAAA 3 107 0 TGGTGACCATGTCTGCTTTTTTATTTATAGG 5 120 1 TCAGTTGAAAGTCTTTTTTCTTGCCAGAAAG 5 176 1 TGATTACCTTTTCTTCTTTTTCTACAATATG 5 256 1 AGATGAAAGGGGGTTCTTTTTGT 7 43 1 TAGAAAGATGTCCTTTTCTTTGCCAT 10 5 0 TAAGAGAGATGTCTTTTTTTATACATAAAAA 10 34 1 TATCAAAGGTTTCATTTTTTTATGTATAAAA 10 50 0 TATAATAAGTGCCTTCTCTTCATACGTAACA 10 85 0 GGTGTATCCCTCCTTCCTTTTATAATAAGTG 10 105 0 GAAAATTCAGGTGTGTTTTTATTTTGCTTTC 11 81 1 GTTTTTATTTTGCTTTCTTTTTTAAGCCTTA 11 95 1 ATGTTATATATACTGTTTTTTGTTTATTCAA 11 232 1 CGCGGTGATTTTGTTTATTTTCGATTTGAAT 13 61 1 AGCTTCTCCTGGCTTCATTTTCTGAAAGAAC 13 113 1 GAAACTGCCGGCCAGTTCTTTCAGAAAATGA 13 127 0 CGGCAGTTTCGCCTTTTATTTGTTTTCAGCA 13 148 1 TTTTCAGCAGGCCTGTTCTTTTTGCTGATTG 13 170 1 TTATTTTAATGAGTTTTCTTTCTCGTGTACA 13 238 0 * ********* MAP Score: 16.6294 Motif 3 CATTTTATCTAACAGGAGGTGTTACCTTCATTCTCA 0 13 1 AAATGATTATATCAGGAGGTGACTCCTTATCCTTTG 2 32 1 TGAAAGCATTTTAAGGAGGGAACCCGCAA 3 3 0 AAACATATATTTTAGCAGGCATTCACCTTTTTCATC 3 80 1 TCATCAAAAGAGAAGCAGGAAGAACTTTGACCCTTA 3 111 1 TGACCCTTATATCAGGAGGCTGAGAC 3 138 1 GTATTGTTGCATTAGGCGATCTTTCCGTTGAGAAAG 5 33 1 CTATAAATAAAAAAGCAGACATGGTCACCATGCCTG 5 114 0 AATATGCGTTGAAAGGAGAGGGAATCAAA 5 281 1 TGTATGATTTGAAAGGAGGTTCTAACACT 7 3 0 TATTATAAAAGGAAGGAGGGATACACCGCCC 10 109 1 ATCTTTTTCCGTATGGAGAGTGGTTCCCATAGTCTT 11 148 0 CGTTAAGGAGGTGGCCCCTTACCATTT 12 2 1 AGAAAATGAAGCCAGGAGAAGCTTCCGGAAAAGTGA 13 100 0 GAAAACAAATAAAAGGCGAAACTGCCGGCCAGTTCT 13 139 0 TTTATTTGTTTTCAGCAGGCCTGTTCTTTTTGCTGA 13 162 1 * ******* ** MAP Score: 16.5933 Motif 4 TACCGGTCATTTGGTCATTTTCAAGA 5 5 0 ATGCCTGCTAGATTCCATTTTCATTATGCTG 5 90 0 TGGTGACCATGTCTGCTTTTTTATTTATAGG 5 120 1 TGATTACCTTTTCTTCTTTTTCTACAATATG 5 256 1 CGCCCGTTATCGGGTCATTTTTATGATTGCT 6 26 1 AGATGAAAGGGGGTTCTTTTTGT 7 43 1 CTCTTAGAAAGATGTCCTTTTCTTTGCCAT 10 9 0 TTCTAAGAGAGATGTCTTTTTTTATACATAA 10 31 1 ATGTATCAAAGGTTTCATTTTTTTATGTATA 10 53 0 GGTGTATCCCTCCTTCCTTTTATAATAAGTG 10 105 0 AGAAAATTCAGGTGTGTTTTTATTTTGCTTT 11 80 1 TTTTTATTTTGCTTTCTTTTTTAAGCCTTAA 11 96 1 ACATCATTCAGAGTTGATTTTAGGTTCTTTT 11 192 1 GGCGGCATCCGCGGTGATTTTGTTTATTTTC 13 52 1 AGCTTCTCCTGGCTTCATTTTCTGAAAGAAC 13 113 1 TTCAGCAGGCCTGTTCTTTTTGCTGATTGGA 13 172 1 ATTTTAATGAGTTTTCTTTCTCGTGTACAGA 13 236 0 * ********* MAP Score: 16.2675 Motif 5 AACCATTTTATCTAACAGGAGGTGTTACCTTC 0 10 1 TTCAAATTTTTATATGCGGAAGGGACAG 1 6 0 CTGATTGAAGTAACATAGGAAGATAGAATTTT 1 36 0 GAAAAATGATTATATCAGGAGGTGACTCCTTA 2 29 1 CTTTGACCCTTATATCAGGAGGCTGAGAC 3 135 1 CCAGTATCTTTCTCAACGGAAAGATCGCCTAA 5 44 0 GGCTTGATGTTTCAAGAGGAGGTTCTT 6 61 1 ATGTGTATGATTTGAAAGGAGGTTCTAACACT 7 10 0 TCTCTCTAAGAAGGGAGAACGCTG 8 2 1 AAAAGACATCTCTCTTAGAAAGATGTCCTTTT 10 19 0 AGGCACTTATTATAAAAGGAAGGAGGGATACA 10 102 1 AAATTTTAAAAGAAAATCTTTATAAA 11 4 1 TTTTAAGGCTTAAAAAAGAAAGCAAAATAAAA 11 97 0 CAATAAATATTTACATCGGAGGTGTACGCCTT 11 260 1 GATCTTTCAAAGAACGATCGTGGTTT 13 4 1 * *** ****** MAP Score: 14.59 Motif 6 ACACATGAGATGAAAGGGGGTTCTTTTTGT 7 36 1 TTTCCCTGTTTGATTACCTTTTCTTCTTTTTCTACAAT 5 246 1 AGGTGTGTTTTTATTTTGCTTTCTTTTTTAAGCCTTAA 11 89 1 TACGATTATTTTAATGAGTTTTCTTTCTCGTGTACAGA 13 236 0 TATCAGGAGGTGACTCCTTATCCTTTGTTGAGAGGATA 2 41 1 ATGGCAAAGAAAAGGACATCTTTCTAAGAGAGATG 10 7 1 TATAAAAATTTGAAAATTCTATCTTCCTATGTTACTTC 1 24 1 CATTCAGAGTTGATTTTAGGTTCTTTTGAACTTATAAT 11 196 1 GCAGGCATGGTGACCATGTCTGCTTTTTTATTTATAGG 5 113 1 AAATTTTAAAAGAAAATCTTTATAAAGACATTA 11 5 1 TATTGTTGAATTAACCTTCTATCTTTATGCACAAAAAC 3 46 1 ATTTGTTTTCAGCAGGCCTGTTCTTTTTGCTGATTGGA 13 165 1 TCTTTCTAAGAGAGATGTCTTTTTTTATACATAAAAAA 10 28 1 TTTGATTCCCTCTCCTTTCAACGCATATTG 5 280 0 AAGGCGAAACTGCCGGCCAGTTCTTTCAGAAAATGAAG 13 125 0 TCTCGTGTACAGAAATGCGCTTTTTCTTCCGGCTTGGA 13 211 0 TTATAATGTTATATATACTGTTTTTTGTTTATTCAATA 11 227 1 CGATCGCCCGTTATCGGGTCATTTTTATGATTGCTTAT 6 22 1 CATGCCTGCTAGATTCCATTTTCATTATGCTGTTTTCG 5 84 0 *** ****** * MAP Score: 13.5887 Motif 7 GGAATCTAGCAGGCATGGTGACCATGTCTGC 5 105 1 ATCAAAAGAGAAGCAGGAAGAACTTTGACCC 3 113 1 TCAGAAAATGAAGCCAGGAGAAGCTTCCGGA 13 107 0 ATCATGAACAAAGGATGATGAAAAA 13 285 1 TGTGTGCTCCAAGCCGGAAGAAAAAGCGCAT 13 204 1 TCTCTCTAAGAAGGGAGAACGCTG 8 7 1 TAAGCGAAAACAGCATAATGAAAATGGAATC 5 80 1 ACAATCCAATCAGCAAAAAGAACAGGCCTGC 13 176 0 CAAAAAGAACAGGCCTGCTGAAAACAAATAA 13 163 0 TATGCGTTGAAAGGAGAGGGAATCAAA 5 283 1 ACCCTTATATCAGGAGGCTGAGAC 3 140 1 GTTATTAAAGAGGCTCGGTGAA 4 40 1 TCTTTCTGGCAAGAAAAAAGACTTTCAACTG 5 177 0 CCTCTCAACAAAGGATAAGGAGTCACCTCCT 2 45 0 CTCAATGTTAAGGAAAAATGATTATATCAGG 2 17 1 TTAAAGGATCAAGCCAGGTTATTAAAGAGGC 4 23 1 TTATAAAAGGAAGGAGGGATACACCGCCC 10 111 1 GAGAAGCTTCCGGAAAAGTGATTATATGAAT 13 90 0 TTTTATTTATAGGGAAAATTATAATGACAGG 5 138 1 ***** ***** MAP Score: 10.7213 Motif 8 GGTGTTACCTTCATTCTCATTGCTAGAGTGAAGGTTCTAA 0 30 1 AGGAGGTGACTCCTTATCCTTTGTTGAGAGGATAGGGTTAA 2 45 1 GAATTAACCTTCTATCTTTATGCACAAAAACATATATTTTAG 3 53 1 TCTTCCTGCTTCTCTTTTGATGAAAAAGGTGAATGCCTGCTA 3 92 0 GACCAAATGACCGGTATTGTTGCATTAGGCGATCTTTCCGTT 5 20 1 ATTATAATTTTCCCTATAAATAAAAAAGCAGACATGGTCACC 5 121 0 CAGTTGAAAGTCTTTTTTCTTGCCAGAAAGAATTGGTTTTTC 5 177 1 AAGAGAGATGTCTTTTTTTATACATAAAAAAATGAAACCTTT 10 35 1 TAAAAGAAAATCTTTATAAAGACATTAAATAAATCAAGACGG 11 16 1 TATTTTGCTTTCTTTTTTAAGCCTTAAAACGCCACTAATCGT 11 100 1 ACTATGGGAACCACTCTCCATACGGAAAAAGATGATTATTTA 11 151 1 TTGTTTATTTTCGATTTGAATTCATATAATCACTTTTCCGGA 13 71 1 TAATGAGTTTTCTTTCTCGTGTACAGAAATGCGCTTTTTCTT 13 221 0 ** * * ** * ** * MAP Score: 7.52419 Motif 9 GGAAAAATGATTATATCAGGAGGTGACTCCTTA 2 28 1 TATCCTTTGTTGAGAGGATAGGGTTAA 2 59 1 ACCTTTTTCATCAAAAGAGAAGCAGGAAGAACT 3 104 1 ACTTTGACCCTTATATCAGGAGGCTGAGAC 3 134 1 TAGGGAAAATTATAATGACAGGGGTACATTCAG 5 147 1 CAATATGCGTTGAAAGGAGAGGGAATCAAA 5 280 1 GGGCTTGATGTTTCAAGAGGAGGTTCTT 6 60 1 ATCATACACATGAGATGAAAGGGGGTTCTTTTT 7 31 1 TCTCTCTAAGAAGGGAGAACGCTG 8 4 1 ATTTGTTACGTATGAAGAGAAGGCACTTATTAT 10 82 1 AAGGCACTTATTATAAAAGGAAGGAGGGATACA 10 101 1 GTTTTAAGGCTTAAAAAAGAAAGCAAAATAAAA 11 97 0 GCGCATTTCTGTACACGAGAAAGAAAACTCATT 13 229 1 * * * ******* MAP Score: 6.32559 Motif 10 TGAATTAACCTTCTATCTTTATGCACAAAAACATATATTT 3 52 1 TAGCAGGCATTCACCTTTTTCATCAAAAGAGAAGCAGGAA 3 92 1 TTATTGACCAGTATCTTTCTCAACGGAAAGATCGCCTAAT 5 43 0 CAGTTGAAAGTCTTTTTTCTTGCCAGAAAGAATTGGTTTT 5 177 1 GATTACCTTTTCTTCTTTTTCTACAATATGCGTTGAAAGG 5 257 1 TAAGAGAGATGTCTTTTTTTATACATAAAAAAATGAAACC 10 34 1 TTTATTTTGCTTTCTTTTTTAAGCCTTAAAACGCCACTAA 11 98 1 ATATATACTGTTTTTTGTTTATTCAATAAATATTTACATC 11 237 1 CAAAGAACGATCGTGGTTTTAATCGGTACGCAGCTGGCGG 13 17 1 TCCGCGGTGATTTTGTTTATTTTCGATTTGAATTCATATA 13 59 1 CAGTTTCGCCTTTTATTTGTTTTCAGCAGGCCTGTTCTTT 13 151 1 GGAAGAAAAAGCGCATTTCTGTACACGAGAAAGAAAACTC 13 219 1 ** * *** * * * * MAP Score: 6.14226 Motif 11 AACCATTTTATCTAACAGGAGGTGTTACCT 0 7 1 CAAAAACATATATTTTAGCAGGCATTCACCTTT 3 77 1 CTTTGACCCTTATATCAGGAGGCTGAGAC 3 135 1 GTCTGGTTGTTAAAGGATCAAGCCAGGTTATTA 4 14 1 TCAAGCCAGGTTATTAAAGAGGCTCGGTGAA 4 31 1 AATGAAAATGGAATCTAGCAGGCATGGTGACCA 5 96 1 TCCCTATAAATAAAAAAGCAGACATGGTCACCA 5 120 0 GAAGAAAAGGTAATCAAACAGGGAAAACGTGAT 5 239 0 AACCTCCTCTTGAAACATCAAGCCCATAAGCAA 6 52 0 CGTTAAGGAGGTGGCCCCTTACCAT 12 2 1 GTTTTAATCGGTACGCAGCTGGCGGCATCCGCG 13 32 1 CTTCATTTTCTGAAAGAACTGGCCGGCAGTTTC 13 125 1 CCTTTTATTTGTTTTCAGCAGGCCTGTTCTTTT 13 159 1 * ** ******* MAP Score: 2.81793