AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_operons078_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944248471
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	citM	195	secondary transporter of the Mg2+/citrate complex
#1	yflN	55	yflN
#2	pksB	189	pksB
#3	yobT	76	similar to hypothetical proteins
#4	yobU	53	yobU
#5	yobV	205	similar to hypothetical proteins
#6	yqgX	157	similar to hypothetical proteins
#7	yrkH	128	similar to hypothetical proteins
#8	yybB	146	similar to hypothetical proteins

Motif 1
AAACGGTTTTAAAAAATTAAAAATACAAAAAAACC	0	62	1
TTAAAAATACAAAAAAACCAAATTATTTACTTGCG	0	78	1
GGATCTCTGAAAAAAATGGAAAACAATCATGCTGT	2	82	1
GTAAGGGAGAAAAAAATGTAAGCGGATTCATTTAA	0	158	1
CATACGATGGCAAAAAGGCAAGACAAAAAGGGGAG	0	124	1
CTATAATCTTAAAAAAAGGAGGAGATCGT      	4	34	1
GGTTTTTGAAAAAAGATTCAAACAATCGCAATGAA	6	94	0
TACGCCATCTAAAAGATCAAAATAAGGAACATTCA	7	31	0
AAGAGCATAAAAAAGAAAGAGGTGATAATA     	6	137	1
ATAGTTTTAAAGAAAACAGAAGTGAACGGACTATT	8	93	0
AAATTGATCAAAAAGAACAAAACGGTTTTAAAAAA	0	43	1
TTGTTCTTTGAAAATAAAAAAGCGACTCTTTTGGA	2	47	0
ATACTGAACACAAAAAAGAAGGGGAAACCCCTGTT	5	73	1
AAACCTATAAAAAACAGGTAGAATAAAACTGGAAA	6	46	0
          ******   ***  *
MAP Score: 17.4789

Motif 2
GTAAATAATTTGGTTTTTTTGTATTTTTAATT	0	76	0
ATGAATCCGCTTACATTTTTTTCTCCCTTACT	0	157	0
TCCAAAAGAGTCGCTTTTTTATTTTCAAAGAA	2	47	1
CATGATTGTTTTCCATTTTTTTCAGAGATCCT	2	81	0
AAACTAATGGTGTTAGTTTTATTATTAACTAA	3	34	0
  CACACTGCTGTCAGGTTTCTTTGTCTATAA	4	8	1
GGGGTTTCCCCTTCTTTTTTGTGTTCAGTATT	5	72	0
CAAAATGTTATGATTGTTTTGTTGGAAAATAC	5	163	1
GCACCTTTTCTTCTTGTATTTTCCAACAAAAC	5	178	0
CTGGAAACAATTGCAGGTTTTTCAATGTAAAG	6	21	0
CTGCAATTGTTTCCAGTTTTATTCTACCTGTT	6	37	1
TACCTGTTTTTTATAGGTTTGTCGATAGCGGT	6	61	1
TTATCACCTCTTTCTTTTTTATGCTCTTATTA	6	133	0
ACGCTCGAGCTGACTGGATTCTTGAGAGGAAA	8	54	0
AGTCCGTTCACTTCTGTTTTCTTTAAAACTAT	8	96	1
          ** ******* *
MAP Score: 16.3636

Motif 3
CATCCCGGGATTTTTTTCATGCCGAAAATT	0	18	1
TTTAAAACCGTTTTGTTCTTTTTGATCAAT	0	45	0
TAATTTGGTTTTTTTGTATTTTTAATTTTT	0	73	0
TTGTCTTGCCTTTTTGCCATCGTATGGGAA	0	120	0
CTTACTCCCCTTTTTGTCTTGCCTTTTTGC	0	133	0
TCCGCTTACATTTTTTTCTCCCTTACTCCC	0	154	0
AAAAGAGTCGCTTTTTTATTTTCAAAGAAC	2	50	1
TTGTTTTCCATTTTTTTCAGAGATCCTTGT	2	78	0
GATCTCCTCCTTTTTTTAAGATTATAGACA	4	31	0
GTGTTCAGTATTTATTTCAGCTACTATTTC	5	54	0
CCCTTCTTTTTTGTGTTCAGTATTTATTTC	5	66	0
GGGGAAACCCCTGTTTTCATAGCATATGCG	5	93	1
TCTGCGCACCTTTTCTTCTTGTATTTTCCA	5	185	0
AAACCTGCAATTGTTTCCAGTTTTATTCTA	6	33	1
TTGTTTGAATCTTTTTTCAAAAACCCTCAT	6	104	1
TCACCTCTTTCTTTTTTATGCTCTTATTAT	6	132	0
TCAGAAGGAATTTTCTCCAAGATATCTTCT	7	65	0
GAAACGCCGATTTTCGCCAGCATCAGCTCA	8	28	0
CCGTTCACTTCTGTTTTCTTTAAAACTATC	8	99	1
          **********
MAP Score: 11.2207

Motif 4
AACCGTTTTGTTCTTTTTGATCAATTTTCGG	0	39	0
GTAAATAATTTGGTTTTTTTGTATTTTTAAT	0	77	0
AATTATTTACTTGCGGTTGGTTTTCCCATAC	0	98	1
GAATGTTGTATGCCGTTAGTGTGTGTCATTA	1	21	0
TGAAAAGCGATTCTTGTTGGGCATGCGTCCA	2	20	1
CCAAAAGAGTCGCTTTTTTATTTTCAAAGAA	2	48	1
AAAACAATCATGCTGTTTGGTAAAGTGGAAT	2	101	1
GAAAAACTAATGGTGTTAGTTAATAATAAAA	3	19	1
CAAAAACTAATGGTGTTAGTTTTATTATTAA	3	38	0
CTAACACCATTAGTTTTTGTTAGGAGGAATA	3	50	1
     CACACTGCTGTCAGGTTTCTTTGTCT	4	5	1
  ACGATCTCCTCCTTTTTTTAAGATTATAG	4	34	0
GGGTTTCCCCTTCTTTTTTGTGTTCAGTATT	5	72	0
TTTATTCTACCTGTTTTTTATAGGTTTGTCG	6	54	1
GCGGTTTTCATTGCGATTGTTTGAATCTTTT	6	88	1
TATCACCTCTTTCTTTTTTATGCTCTTATTA	6	133	0
CCTTATTTTGATCTTTTAGATGGCGTAGAAG	7	39	1
TTGGAGAAAATTCCTTCTGATAAAGAAGTGC	7	75	1
GTCCGTTCACTTCTGTTTTCTTTAAAACTAT	8	97	1
          ********* *
MAP Score: 5.41809

Motif 5
CCGGGATTTTTTTCATGCCGAAAATTGATCAAAAAG	0	22	1
CAAAAAGGGGAGTAAGGGAGAAAAAAATGTAAGCGG	0	147	1
AGCGGATTCATTTAAGGGGGAATGGAT         	0	178	1
CATTAGTTTTTGTTAGGAGGAATAAAAAG       	3	57	1
AGTGTATGCTTATCCGGTCGGAAATAGTAGCTGAAA	5	34	1
GCATATCTATTATGCGGCGGAATACACCTCGCATAT	5	116	0
ATGTTATGATTGTTTTGTTGGAAAATACAAGAAGAA	5	167	1
AACCTATAAAAAACAGGTAGAATAAAACTGGAAACA	6	44	0
GCGTAGAAGATATCTTGGAGAAAATTCCTTCTGATA	7	61	1
AGTCAGCTCGAGCGTGGGTGAAAATAGTCCGTTCAC	8	71	1
  GCAAACCATCTCCTGTGGAAATTTTTTGATAGTT	8	122	0
          * *  **  ***** *
MAP Score: 4.68637

Motif 6
AACCGTTTTGTTCTTTTTGATCAATTTTCGGCAT	0	36	0
AAAGAGTCGCTTTTTTATTTTCAAAGAACAAGGA	2	51	1
AAAACAATCATGCTGTTTGGTAAAGTGGAATGAA	2	101	1
ATGTTATGATTGTTTTGTTGGAAAATACAAGAAG	5	167	1
AATTTGGTTTTTTTGTATTTTTAATTTTTTAAAA	0	68	0
CGTTCACTTCTGTTTTCTTTAAAACTATCAAAAA	8	100	1
TTGGAGAAAATTCCTTCTGATAAAGAAGTGCTGG	7	75	1
GCTGTCAGGTTTCTTTGTCTATAATCTTAAAAAA	4	16	1
TCCCCTTCTTTTTTGTGTTCAGTATTTATTTCAG	5	64	0
GATTGTTTGAATCTTTTTTCAAAAACCCTCATAA	6	102	1
CATTTGAATGTTCCTTATTTTGATCTTTTAGATG	7	27	1
CCGCTTACATTTTTTTCTCCCTTACTCCCCTTTT	0	149	0
CACCTCTTTCTTTTTTATGCTCTTATTATGAGGG	6	127	0
TCCCGGGATTTTTTTCATGCCGAAAATTGATCAA	0	20	1
CTTTTTGTCTTGCCTTTTTGCCATCGTATGGGAA	0	120	0
TAATGGTGTTAGTTTTATTATTAACTAACACCAT	3	28	0
ACCTCCGGAATGTTGTATGCCGTTAGTGTGTGTC	1	25	0
GATATGCCCAAGCTTTATCAAAATGTTATGATTG	5	145	1
          ****** **   **
MAP Score: 4.20753

Motif 7
CATCCCGGGATTTTTTTCATGCCGAAAATTGAT	0	18	1
AAGAACAAAACGGTTTTAAAAAATTAAAAATAC	0	55	1
AAAAGAGTCGCTTTTTTATTTTCAAAGAACAAG	2	50	1
GGGGAAACCCCTGTTTTCATAGCATATGCGAGG	5	93	1
AATGTTATGATTGTTTTGTTGGAAAATACAAGA	5	166	1
CAATTGTTTCCAGTTTTATTCTACCTGTTTTTT	6	40	1
TTGTCGATAGCGGTTTTCATTGCGATTGTTTGA	6	79	1
TTGTTTGAATCTTTTTTCAAAAACCCTCATAAT	6	104	1
CCGTTCACTTCTGTTTTCTTTAAAACTATCAAA	8	99	1
          * ********  *
MAP Score: 1.10705

Motif 8
TTTCATGCCGAAAATTGATCAAAAAGAACAAAAC	0	32	1
TTAAAAAATTAAAAATACAAAAAAACCAAATTAT	0	70	1
ATACGATGGCAAAAAGGCAAGACAAAAAGGGGAG	0	125	1
AGGCAAGACAAAAAGGGGAGTAAGGGAGAAAAAA	0	139	1
AAGGGAGAAAAAAATGTAAGCGGATTCATTTAAG	0	160	1
TTGTTCTTTGAAAATAAAAAAGCGACTCTTTTGG	2	48	0
GATCTCTGAAAAAAATGGAAAACAATCATGCTGT	2	83	1
TGCTGTTTGGTAAAGTGGAATGAAAGACGGACTG	2	111	1
TATAATCTTAAAAAAAGGAGGAGATCGT      	4	35	1
TACTGAACACAAAAAAGAAGGGGAAACCCCTGTT	5	74	1
GTTTTGTTGGAAAATACAAGAAGAAAAGGTGCGC	5	178	1
TTTTTCAATGTAAAGGGGGCTGTGTT        	6	2	0
ATAAGAGCATAAAAAAGAAAGAGGTGATAATA  	6	135	1
AGTTTTAAAGAAAACAGAAGTGAACGGACTATTT	8	92	0
          ****  **** * *
MAP Score: 0.225474