AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_operons078_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944248495 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 yfmA 40 yfmA #1 yflT 35 yflT #2 pel 190 pectate lyase #3 yflS 126 similar to 2-oxoglutarate/malate translocator #4 citS 126 two-component sensor histidine kinase #5 yflP 182 yflP #6 citM 195 secondary transporter of the Mg2+/citrate complex #7 yflN 55 yflN #8 pksA 120 transcriptional regulator #9 pksB 189 pksB #10 yobT 76 similar to hypothetical proteins #11 yobU 53 yobU #12 yobV 205 similar to hypothetical proteins #13 yqgX 157 similar to hypothetical proteins #14 yrkH 128 similar to hypothetical proteins #15 yrkG 300 yrkG #16 yybB 146 similar to hypothetical proteins #17 yybA 119 similar to transcriptional regulator (MarR family) Motif 1 GTCGATATTCCTCCTTCATGTTTTCTATATTTCT 1 11 0 CCGACATTGGCCTTTTGGTTTTTTCCTTGCT 2 7 0 CCAATGTCGGCCTTTTGGTTTTTTTGCGGTCTTT 2 31 1 CTATGTACCCCCATTTTCTATTTTGTGAGATTTT 2 163 0 AGGTTAGCACCCTTTGTGTTTTTCACTTTC 3 6 0 AGGGTGCTAACCTTTGTGTTTTTTAATTAATTAA 3 27 1 AGGCAGACCGCGTCTGCCTTTTTCTTT 4 3 0 ACGCGGTCTGCCTTTTTTTATTTTCACTCCTTCG 4 24 1 TTTTTAAAACCGTTTTGTTCTTTTTGATCAATTT 6 43 0 CCCTTACTCCCCTTTTTGTCTTGCCTTTTTGCCA 6 131 0 TAAATGAATCCGCTTACATTTTTTTCTCCCTTAC 6 158 0 ATAAAAATTGCCCTCTCATTTTTTTCTTGTTACA 8 88 1 CCAAAAGAGTCGCTTTTTTATTTTCAAAGAACAA 9 48 1 AAAACTAACACCATTAGTTTTTGTTAGGAGGAAT 10 46 1 ACGATCTCCTCCTTTTTTTAAGATTATAG 11 34 0 CAGGGGTTTCCCCTTCTTTTTTGTGTTCAGTATT 12 72 0 TCTGCGCACCTTTTCTTCTTGTATTTTCCAAC 12 183 0 TATTATCACCTCTTTCTTTTTTATGCTCTTAT 13 135 0 GTAGGCGGGGCTGTTACCTTTTTTGGTTTTACGA 15 211 1 TCCTAAAACCCCTCACGTATTTTTGTTGCAATT 17 96 0 ** ** * * **** MAP Score: 35.8584 Motif 2 CGATATTCCTCCTTCATGTTTTCTATATTTCTT 1 8 0 CCTCAATTTGCTATTATATTTTTGTGATAAATTGG 2 125 1 CCACTATGTACCCCCATTTTCTATTTTGTGAGA 2 167 0 AGGTTAGCACCCTTTGTGTTTTTCACTTTC 3 5 0 AGGGTGCTAACCTTTGTGTTTTTTAATTAATTAAA 3 27 1 ACTTGTTTTCCGATCCCCTTTTCCATTCTACTCCT 3 81 0 AGGCAGACCGCGTCTGCCTTTTTCTTT 4 2 0 GCAGACGCGGTCTGCCTTTTTTTATTTTCACTCCT 4 20 1 TCACAGGGAATTTTCTCATTTTTCAAAATCCATTT 4 63 0 TAATTTGGTTTTTTTGTATTTTTAATTTTTTAAAA 6 68 0 CCCTTTTTGTCTTGCCTTTTTGCCATCGTATGGGA 6 121 0 TTTTCTCCCTTACTCCCCTTTTTGTCTTGCCTTTT 6 136 0 AATGAATCCGCTTACATTTTTTTCTCCCTTACTCC 6 155 0 TCCATTCCCCTCTTTTCAATACAGTTGTA 8 4 1 AATATGTTACCATCTTTGTTTTTGTAACACAACTG 8 49 1 ATAAAAATTGCCCTCTCATTTTTTTCTTGTTACAA 8 88 1 AAAAGAGTCGCTTTTTTATTTTCAAAGAACAAGGA 9 50 1 GCATGATTGTTTTCCATTTTTTTCAGAGATCCTTG 9 79 0 ACGATCTCCTCCTTTTTTTAAGATTATAGAC 11 32 0 ACAGGGGTTTCCCCTTCTTTTTTGTGTTCAGTATT 12 72 0 GCACCTTTTCTTCTTGTATTTTCCAACAAAACAAT 12 175 0 CCAGTTTTATTCTACCTGTTTTTTATAGGTTTGTC 13 49 1 TGCGATTGTTTGAATCTTTTTTCAAAAACCCTCAT 13 99 1 TATTATCACCTCTTTCTTTTTTATGCTCTTATTA 13 133 0 ATAGTCCGTTCACTTCTGTTTTCTTTAAAACTATC 16 94 1 CCTAAAACCCCTCACGTATTTTTGTTGCAATTACA 17 93 0 * * * * ***** * MAP Score: 29.7403 Motif 3 AAGAAATATAGAAAACATGAAGGAGGAATATC 1 1 1 AGCAAGGAAAAAACCAAAAGGCCAATGTCGG 2 0 1 CCACCGCAAAGACCGCAAAAAAACCAAAAGGCCGACATTGG 2 31 0 GCAAATTGAGGGACATTCAGAACCGAAAATGTTCCGCTATC 2 95 0 ATTGGAATAAAATCTCACAAAATAGAAAATGGGGGTACATA 2 155 1 GAAAGTGAAAAACACAAAGGGTGCTAACCTTTG 3 2 1 TAAACATTTTAATTAATTAAAAAACACAAAGGTTAGCACCC 3 28 0 TGGAAAAGGGGATCGGAAAACAAGTATATAGGAGGAGACCT 3 91 1 CGAAGGAGTGAAAATAAAAAAAGGCAGACCGCGTCTGCCTT 4 17 0 TCATGCCGAAAATTGATCAAAAAGAACAAAACGGTTTTAAA 6 34 1 AACGGTTTTAAAAAATTAAAAATACAAAAAAACCAAATTAT 6 63 1 AGGGGAGTAAGGGAGAAAAAAATGTAAGCGGATTCATTTAA 6 152 1 GCTTTATTGTAACAAGAAAAAAATGAGAGGGCAATTTTTAT 8 88 0 TCTCTGAAAAAAATGGAAAACAATCATGCTGTTTGGTAAAG 9 85 1 CTTTGTCTATAATCTTAAAAAAAGGAGGAGATCGT 11 28 1 GTTTTGTTGGAAAATACAAGAAGAAAAGGTGCGCAGA 12 178 1 CGCTATCGACAAACCTATAAAAAACAGGTAGAATAAAACTG 13 50 0 TTTTTGAAAAAAGATTCAAACAATCGCAATGAAAACCGCTA 13 86 0 CCCTCATAATAAGAGCATAAAAAAGAAAGAGGTGATAATA 13 127 1 TAAAAGATCAAAATAAGGAACATTCAAATGGTCAAAGTCAT 14 16 0 GTAATATTGCGACAAGGAAAAGAGCATGTCGCAGAAGGTTG 15 50 1 TATTAGTCTGGACTGTACAGCACGCATGTGGTCTTATAATA 17 31 1 ** **** ** * * MAP Score: 15.4038 Motif 4 AGAAAACATGAAGGAGGAATATCGAC 1 19 1 TAACTTAGTTAAGGAGTAGAATGGAAAAGG 3 70 1 GAGTAGAATGGAAAAGGGGATCGGAAAACA 3 83 1 AACAAGTATATAGGAGGAGACCTATTT 3 109 1 TTTTCTTACGAAGGAGTGAAAATAAAAAAA 4 36 0 ATGGATTTTGAAAAATGAGAAAATTCCCTG 4 65 1 AAGGCAAGACAAAAAGGGGAGTAAGGGAGA 6 138 1 GGATTCATTTAAGGGGGAATGGAT 6 181 1 ACTGTATTGAAAAGAGGGGAATGGA 8 5 0 GTAACAAGAAAAAAATGAGAGGGCAATTTT 8 91 0 TAGTTTTTGTTAGGAGGAATAAAAAG 10 60 1 ATCTTAAAAAAAGGAGGAGATCGT 11 39 1 ACACTTCTCAACGGAGGGGATTTCACATC 12 9 0 GAACACAAAAAAGAAGGGGAAACCCCTGTT 12 78 1 TATGCTATGAAAACAGGGGTTTCCCCTTCT 12 89 0 CATAAAAAAGAAAGAGGTGATAATA 13 142 1 AGATTTGATATAGGAGGTATTGAAAC 15 284 1 ********** MAP Score: 7.75822 Motif 5 AGCAAGGAAAAAACCAAAAGGCCAATGTCGG 2 9 1 GACCGCAAAAAAACCAAAAGGCCGACATTGGC 2 30 0 AATCTCACAAAATAGAAAATGGGGGTACATAG 2 165 1 AATTAATTAAAAAACACAAAGGTTAGCACCCT 3 27 0 TAAGGAGTAGAATGGAAAAGGGGATCGGAAAA 3 79 1 AAAGAAAAAGGCAGACGCGGTC 4 0 1 AAGGAGTGAAAATAAAAAAAGGCAGACCGCGT 4 24 0 TTGATCAAAAAGAACAAAACGGTTTTAAAAAA 6 46 1 TTCCCATACGATGGCAAAAAGGCAAGACAAAA 6 120 1 GCAAAAAGGCAAGACAAAAAGGGGAGTAAGGG 6 133 1 GGAGTAAGGGAGAAAAAAATGTAAGCGGATTC 6 155 1 TATTGTAACAAGAAAAAAATGAGAGGGCAATT 8 93 0 CAAGGATCTCTGAAAAAAATGGAAAACAATCA 9 79 1 GGTAAAGTGGAATGAAAGACGGACTGAGGGGT 9 119 1 TGTCTATAATCTTAAAAAAAGGAGGAGATCGT 11 31 1 ATACTGAACACAAAAAAGAAGGGGAAACCCCT 12 73 1 TCGCATATGCTATGAAAACAGGGGTTTCCCCT 12 92 0 CGACAAACCTATAAAAAACAGGTAGAATAAAA 13 53 0 AAACAATCGCAATGAAAACCGCTATCGACAAA 13 78 0 AAGAGCATAAAAAAGAAAGAGGTGATAATA 13 137 1 TGGTCGTTTGCGCAAAAGAAGGTTCATCCGTC 14 106 1 ATATTGCGACAAGGAAAAGAGCATGTCGCAGA 15 53 1 TTATGGGTTTAACAAAAGATGATTTTATGGAA 15 170 1 TCTTTCGTAAAACCAAAAAAGGTAACAGCCCC 15 217 0 TGATAGTTTTAAAGAAAACAGAAGTGAACGGA 16 98 0 ** ****** ** MAP Score: 7.59785 Motif 6 GACATACCTCCTGCTCGTACGGATAAAGGCA 0 12 1 AAAGAAAAAGGCAGACGCGGTCTGCCTTT 4 8 1 GTAGAAAGGACGGCTGGTGCT 4 115 1 GATATCAGGCAGGCGGCTGCGCCGCGCCTGC 5 63 1 TCGGCCCGTCCGGCAGGCGCGGCGCAGCCGC 5 75 0 CCAGAAGGTTCGGCAGGGACGACAATTTCTA 5 106 0 AACCTTCTGGCGGCTGGGATGTCACAGCGCA 5 127 1 TGGGATGTCACAGCGCAGGCGATCCAATCAG 5 141 1 AGAATCCAGTCAGCTCGAGCGTGGGTGAAAA 16 64 1 CTGGACTGTACAGCACGCATGTGGTCTTATA 17 38 1 ******* *** MAP Score: 5.18629 Motif 7 GTCGATATTCCTCCTTCATGTTTTCTATATTTCTT 1 7 0 ACCAAAAGGCCGACATTGGCCTTTTGGTTTTTTCCTTG 2 12 0 AAGGTTAGCACCCTTTGTGTTTTTCACTTTC 3 3 0 ATACTTGTTTTCCGATCCCCTTTTCCATTCTACTCCTT 3 80 0 AAAAGGCAGACGCGGTCTGCCTTTTTTTATTTTCACTC 4 15 1 TTTTTAAAACCGTTTTGTTCTTTTTGATCAATTTTCGG 6 39 0 TTTTTTCTCCCTTACTCCCCTTTTTGTCTTGCCTTTTT 6 135 0 ATAAAAATTGCCCTCTCATTTTTTTCTTGTTACAATAA 8 88 1 GTGTTCACCCCTCAGTCCGTCTTTCATTCCACTTTACC 9 119 0 ACGATCTCCTCCTTTTTTTAAGATTATAG 11 34 0 ACAGGGGTTTCCCCTTCTTTTTTGTGTTCAGTATTTAT 12 69 0 AACACAGCCCCCTTTACATTGAAAAACCTG 13 2 1 TATTATCACCTCTTTCTTTTTTATGCTCTTATTATGA 13 130 0 CAACCTTCTGCGACATGCTCTTTTCCTTGTCGCAATAT 15 53 0 TCCTAAAACCCCTCACGTATTTTTGTTGCAATTACAA 17 92 0 * * ** ***** * MAP Score: 4.95916 Motif 8 GGAAAAAACCAAAAGGCCAATGTCGGCCTTT 2 15 1 CAAAAAAACCAAAAGGCCGACATTGGCCTTT 2 26 0 TTAAGGAGTAGAATGGAAAAGGGGATCGGAA 3 78 1 TGGAAAAGGGGATCGGAAAACAAGTATATAG 3 91 1 AAAGAAAAAGGCAGACGCGGTCTGCC 4 5 1 TGAAAATAAAAAAAGGCAGACCGCGTCTGCC 4 19 0 GATCTAGGTAGAAAGGACGGCTGGTGCT 4 108 1 AGAAGGTTCGGCAGGGACGACAATTTCTATC 5 104 0 ACGATGGCAAAAAGGCAAGACAAAAAGGGGA 6 127 1 TCTTTTGGACGCATGCCCAACAAGAATCGCT 9 25 0 TCTCTGAAAAAAATGGAAAACAATCATGCTG 9 85 1 TGGTAAAGTGGAATGAAAGACGGACTGAGGG 9 118 1 ACACAAAAAAGAAGGGGAAACCCCTGTTTTC 12 80 1 AAGAGCATAAAAAAGAAAGAGGTGATAATA 13 137 1 *** ******* MAP Score: 4.08361 Motif 9 GGTGATATCAGGCAGGCGGCTGCGCCGCGCCTGCCGGACGGGCC 5 60 1 CTGCCGAACCTTCTGGCGGCTGGGATGTCACAGCGCAGGCGATC 5 121 1 GCGCAGGCGATCCAATCAGTTTTGAGGCAGAAGCAGATC 5 153 1 TTTTAATTTTTTAAAACCGTTTTGTTCTTTTTGATCAATTTTCG 6 40 0 GACTGAGGGGTGAACACTGGTCCATCGTTTAAGAACTTTACATG 9 140 1 GATGTGAAATCCCCTCCGTTGAGAAGTGTATGCTTATCCGGTC 12 9 1 CAACTCCCATTTCAATCAGTTAAGAATAGAAGGCACATTTGCGT 15 96 0 CTCTCAAGAATCCAGTCAGCTCGAGCGTGGGTGAAAATAGTCCG 16 58 1 AATAGTAAGGTTAAAACATTTTTGTTGTAATTGCAACAAAAATA 17 68 1 * ** * * * * * ** MAP Score: 1.58497 Motif 10 TCCGTACGAGCAGGAGGTATGTCTA 0 4 0 TTTTGCGGTCTTTGCGGTGGGATTTTGCAGA 2 52 1 TGCAGGGTGATATCAGGCAGGCGGCTGCGCC 5 55 1 TCTATCGGCCCGTCCGGCAGGCGCGGCGCAG 5 79 0 GCCGCCAGAAGGTTCGGCAGGGACGACAATT 5 110 0 GCCGAACCTTCTGGCGGCTGGGATGTCACAG 5 123 1 TCCAATCAGTTTTGAGGCAGAAGCAGATC 5 163 1 TTTTGATCAATTTTCGGCATGAAAAAAATCC 6 25 0 AAATTATTTACTTGCGGTTGGTTTTCCCATA 6 97 1 AGTGTATGCTTATCCGGTCGGAAATAGTAGC 12 34 1 GCATATCTATTATGCGGCGGAATACACCTCG 12 121 0 ******** ** MAP Score: 1.30628