AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_profile026_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944251565 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 yhcU 110 yhcU #1 yhcV 136 similar to hypothetical proteins #2 spoVK 300 alternate gene name: spoVJ; disruption leads to the production of immature spores (stage V sporulation) #3 ynbA 220 similar to GTP-binding protein protease modulator #4 ynbB 187 similar to hypothetical proteins #5 glnR 110 transcriptional regulator #6 glnA 60 glutamine synthetase #7 trpE 215 anthranilate synthase #8 aroB 61 3-dehydroquinate synthase #9 aroF 69 chorismate synthase #10 cheR 236 methyl-accepting chemotaxis proteins (MCPs) methyltransferase #11 ndk 115 nucleoside diphosphate kinase #12 gerCA 162 heptaprenyl diphosphate synthase component I #13 mtrB 21 tryptophan operon RNA-binding attenuation protein (TRAP) #14 mtrA 187 GTP cyclohydrolase I #15 hbs 300 non-specific DNA-binding protein HBsu #16 hom 200 homoserine dehydrogenase #17 yutH 152 yutH #18 yvgL 110 alternate gene name: yvsD; similar to molybdate-binding protein #19 yvgM 103 alternate gene name: yvsC; similar to molybdenum transport permease Motif 1 AAACTAAGTTAAGAAAAGGAGGAAATTGAG 5 90 1 TGAAAAAAGGAAAAAAAGGAATATTCGTTC 15 13 1 CGCCACCTGAAAGGAAAGCACAACGGGTGT 19 32 0 TATTTTAATGAAGAAAATGAACAGTATGAC 4 90 1 AAGAAAAACACTTCAGGTAT 2 0 1 GGCTATGTCCAAGAAGAGCAAAGTATCATC 4 126 1 CCAATATGCAAAAGAAAGGAACATCCATTT 3 115 1 AAGAAGGCGCAAGAAAAAGTCGTAAACTTC 17 54 0 AAGGGAGTTAGAGGAAAGGTTTTATGATAT 1 66 0 TATTGTTCCCGAAAAAAGCAATTGTTTCGA 2 212 1 ATTATAGCATAAAAAAAAGAATTGGCTGTA 12 59 0 ACGGCTTTTTAAGAAAAACTGCACTCTGAG 15 160 0 CCTGTCTCAGAAAAAAATGAGAGCAAGTAA 15 205 0 AGGACAATCAAAAGAAAGGTGGAGTTTTT 16 181 1 GAGAGCAAGTAAGAGAAAGACAATTAAACG 15 187 0 GACCGCATTAGAGAAAATGTGGAGAATATG 8 18 1 TTTACCTTTTAAGAGGAGGAATTTTACCAA 6 40 1 TTGTTTCAATAAAAAAATCAGCTTTTCAGC 10 153 0 GGAGAAAATCTGACAAAAATA 16 1 1 CCGGCAAGTGAAGGGAAGCTCCTTTCCAGA 4 30 1 TCTCTGATACAAAAAGAGCTTTTCTAAAAA 1 32 0 AAATAAACCCAAAAGAAAGACTTCTTTTGG 7 131 0 GCGATGAAGGGAGAAGAAGTC 9 58 1 ACTGAACTGTGAAGAAATGATAATAAACGA 15 246 1 AGTCTTACTCAAGAATAGCACAGAAAAAAA 0 79 0 GAAATAATGAGAAAGAAGCTCACTATAATA 2 81 1 ********** MAP Score: 15.2353 Motif 2 ACAGAAAAAAACGCGAAAGCTAAGGTAAGTGT 0 58 0 AGCCCGTTGTATGAAAAAGAAATAATGAGAAA 2 63 1 AAAAGAAATAATGAGAAAGAAGCTCACTATAA 2 77 1 AGGCGGAAATACGAGCAAAAAACAGACCTCTC 3 24 0 ACTGCCCAATATGCAAAAGAAAGGAACATCCA 3 110 1 ATCCATTTGAACGAACAAGAAACGATTCAGGA 3 137 1 GAAACGATTCAGGAGAAAGCCATTTTAGTCGG 3 155 1 TATGTCCAAGAAGAGCAAAGTATCATCGGTGA 4 129 1 TGTTTATTCTACCCAAAAGAAGTCTTTCTTTT 7 119 1 TAACAAATAAACCCAAAAGAAAGACTTCTTTT 7 133 0 CCTTATGGCAAGGAGAATGAGAAGATGGCATG 7 183 0 TGTGGAGAATATGAGAAAACTGTCGAGGGAAT 8 35 1 TTGATTAATTATCAGAAAGATGTTACGATTTC 11 45 1 ATACCTGCGTAAGCGAATGAAAAGATAAAACT 12 90 1 GGATGAAAAAAGGAAAAAAAGGAATATTCGTT 15 10 1 TAAATCCTTGACGAGCAAGGGATTGACGCTTT 15 55 1 GAGAGCAAGTAAGAGAAAGACAATTAAACGGC 15 185 0 AATCCGAAGAAGGCGCAAGAAAAAGTCGTAAA 17 58 0 * ******** * MAP Score: 14.2392 Motif 3 GTTAAATGGCTCCTTTTCGAAGCGG 0 3 1 TCATGCGGCAAGGGCTTTTCTATTTTTAGA 1 8 1 TCTGATACAAAAAGAGCTTTTCTAAAAATAGA 1 28 0 AGAGTATTATAGTGAGCTTCTTTCTCATTATT 2 83 0 CATCCGACTAAAATGGCTTTCTCCTGAATCGT 3 158 0 TGATTCTGGAAAGGAGCTTCCCTTCACTTGCC 4 32 0 TCTACCCAAAAGAAGTCTTTCTTTTGGGTTTA 7 126 1 TCAATAAAAAAATCAGCTTTTCAGCTGATTTT 10 146 0 CTCCCAGTCTCGCTGTCTTTTTGTCCTAGTAT 10 207 0 GCCCCTTAGAAAGGGGCTTTTCTGTGAAGAAA 14 54 0 GCCCCTTTCTAAGGGGCTTTTCATATTTCAAG 14 69 1 ATTTCAAGAGCATGGGCTTCCTGACAGGGCAT 14 93 1 AAAATGCTTGATATGGCTTTTTATATGTGTTA 15 87 1 AAAGACAATTAAACGGCTTTTTAAGAAAAACT 15 170 0 AAAGCCGTTTAATTGTCTTTCTCTTACTTGCT 15 182 1 TTGAGTTAACAATTGTCTTTTCCAAGAGGACA 16 155 1 ** ******** MAP Score: 13.6303 Motif 4 CGATTGCTTTGAAAAGGCGGAAATACGAGCAA 3 38 0 ACTAAGTTAAGAAAAGGAGGAAATTGAG 5 92 1 TACATTCGGCGAAAAGGTATAATAAAATAGGA 18 21 0 GTAAGCGAATGAAAAGATAAAACTCATACATA 12 98 1 CCGCATTAGAGAAAATGTGGAGAATATGAGAA 8 20 1 TAGATCGTTGGGAAAGGCAGAGGTCTGATGCA 10 115 0 TTTTAATGAAGAAAATGAACAGTATGACATAT 4 92 1 GGATGAAAAAAGGAAAAAAAGGAATATT 15 6 1 CTTCCGCTTCGAAAAGGAGCCATTTAAC 0 6 0 TCATTGTGAAAATAAGCAACAGAGCCGGC 10 7 1 AAAATAATTAGAAAATAAAGAATCTTGTCATA 16 25 1 CCGTTGTATGAAAAAGAAATAATGAGAAAGAA 2 66 1 GACAATCAAAAGAAAGGTGGAGTTTTT 16 183 1 TTATGGCAAGGAGAATGAGAAGATGGCATGAG 7 181 0 TTTTAATCCGAAGAAGGCGCAAGAAAAAGTCG 17 62 0 TTCCTCCTCTTAAAAGGTAAAAATGTATATAG 6 29 0 TATGTAGGAAGGAAATATAAAGAC 4 173 1 GAGCTTTTCTAAAAATAGAAAAGCCCTTGCCG 1 15 0 AGAACAGCTTAGAAATACACAAGAGTGTGTAT 7 17 1 ******* * ** MAP Score: 12.9825 Motif 5 AGCTTTCGCGTTTTTTTCTGTGCTATTCTTGAGT 0 69 1 AGAGGAAAGGTTTTATGATATGATTTCTCTGATA 1 53 0 TTTTTAATCATTTTGTCAGAGTATTATAGTGAGC 2 98 0 GAGAGGTCTGTTTTTTGCTCGTATTTCCGCCTTT 3 24 1 TTTTTTAAAAATTTCTCCTGGATTTGATGTTAAG 5 11 1 CTCAATTTCCTCCTTTTCTTAACTTAGTT 5 91 0 TTATATAGTATTTTATCCTCTCATGCCATCTTCT 7 162 1 CCCTCGACAGTTTTCTCATATTCTCCACATTTTC 8 30 0 CGCCGCCGGTTTTTGTTCTGTTTTGTAAAGGTTT 10 48 1 CTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTT 10 197 0 CAATTCTTTTTTTTATGCTATAATGATACCTGCG 12 65 1 TATGTATGAGTTTTATCTTTTCATTCGCTTACGC 12 96 0 GAATATTCCTTTTTTTCCTTTTTTCATCC 15 5 0 TTCTAATTATTTTTGTCAGATTTTCTCC 16 4 0 TCACCCAATCTTTTTTACTAGTTTATACAAAATG 17 15 1 **** **** * * MAP Score: 12.1901 Motif 6 AGAATAGCACAGAAAAAAACGCGAAAGCTAAGG 0 65 0 TTGTATGAAAAAGAAATAATGAGAAAGAAGCTC 2 69 1 TGAATACAATAAGAAATAAAGTATTTCTCGGGA 2 164 1 AACTAAGTTAAGAAAAGGAGGAAATTGAG 5 91 1 TCCTCTTAAAAGGTAAAAATGTATATAGCAAAA 6 24 0 ACCGCATTAGAGAAAATGTGGAGAATATGAGAA 8 19 1 TCATTATAGCATAAAAAAAAGAATTGGCTGTAT 12 58 0 ACATAGATTAAGAAATAAATGTGAATTTGGGGA 12 125 1 CTTTTCTGTGAAGAAATAAAGTGTATGTAAGCT 14 37 0 GGATGAAAAAAGGAAAAAAAGGAATATTCGTTC 15 10 1 AACCTGTCTCAGAAAAAAATGAGAGCAAGTAAG 15 204 0 AAAAATAATTAGAAAATAAAGAATCTTGTCATA 16 24 1 GGACAATCAAAAGAAAGGTGGAGTTTTT 16 182 1 ATAAACTAGTAAAAAAGATTGGGTGAAGCTG 17 8 0 AGAAGGCGCAAGAAAAAGTCGTAAACTTCTCAA 17 50 0 ****** ** * * MAP Score: 12.0974 Motif 7 AAAAATCAGCCCGTTGTATGAAAAAGAAATAATGAGAAAGAA 2 56 1 AAGCTCACTATAATACTCTGACAAAATGATTAAAAACAAAAT 2 96 1 CACCCCATGTCCGTGAATACAATAAGAAATAAAGTATTTCTC 2 151 1 GGATTCCTTATTGTTCCCGAAAAAAGCAATTGTTTCGACACA 2 204 1 TTTGAAAAGGCGGAAATACGAGCAAAAAACAGACCTCTCAAA 3 21 0 TACTACTGCCCAATATGCAAAAGAAAGGAACATCCATTTGAA 3 106 1 AAGGAACATCCATTTGAACGAACAAGAAACGATTCAGGAGAA 3 130 1 GGTAGACCGCTTCTATTTTAATGAAGAAAATGAACAGTATGA 4 77 1 GAGCAAAGTATCATCGGTGAATTAAAGAAGTATATGTAGGAA 4 141 1 ATAACATCACCTATAATGAAACTAAGTTAAGAAAAGGAGGAA 5 72 1 TACTTAAAAGCGTTAATGCGATGAAGGGAGAAGAAGTC 9 41 1 TCATTGTGAAAATAAGCAACAGAGCCGGCAAC 10 0 1 CAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGC 10 153 0 ATAAAACAAGCTATACTAGGACAAAAAGACAGCGAGACTGGG 10 195 1 TACGCAGGTATCATTATAGCATAAAAAAAAGAATTGGCTGTA 12 59 0 AATGATACCTGCGTAAGCGAATGAAAAGATAAAACTCATACA 12 86 1 AAGATAAAACTCATACATAGATTAAGAAATAAATGTGAATTT 12 111 1 GGATGAAAAAAGGAAAAAAAGGAATATTCGTT 15 0 1 CTCTGAGGAATGTTTGTCCAACAAAGTGAAGAATTTCTGTAT 15 125 0 GATTCTAAACCTGTCTCAGAAAAAAATGAGAGCAAGTAAGAG 15 202 0 TAGAATCAGACTGAACTGTGAAGAAATGATAATAAACGAACT 15 237 1 * * ** *** ** * MAP Score: 8.93688 Motif 8 TTAAATGGCTCCTTTTCGAAGCGGAAGGCTGCT 0 11 1 CCTCTAACTCCCTTTTTAAACGGCTCGTGTCTG 1 82 1 CGAAACAATTGCTTTTTTCGGGAACAATAAGGA 2 208 0 CGTATTTCCGCCTTTTCAAAGCAATCGATTTGT 3 43 1 TACATTTTTACCTTTTAAGAGGAGGAATTTTAC 6 34 1 GCGAGCATTTGCTTTTAACAGCGGGGACAGCCA 12 12 0 ACAGAAAAGCCCCTTTCTAAGGGGCTTTTCATA 14 61 1 CATTCACTTTGCTTTTAGCGGGGCATATGTGCT 14 122 1 GCCATATCAAGCATTTTAAAGCGTCAATCCCTT 15 71 0 CTGAATGTATCCTTTTGGGAGGAGGTGAAAGGC 15 277 1 ****** **** MAP Score: 8.69085 Motif 9 CTTACCTTAGCTTTCGCGTTTTTTTCTGTGCTATTCTT 0 61 1 ATCATAAAACCTTTCCTCTAACTCCCTTTTTAAACGGC 1 68 1 TAGTGAGCTTCTTTCTCATTATTTCTTTTTCATACAAC 2 68 0 TCACAATCGGCATCCGCTTGAATATCATATAGAGAGAA 2 259 1 ATGGATGTTCCTTTCTTTTGCATATTGGGCAGTAGTAT 3 105 0 ACTAAAATGGCTTTCTCCTGAATCGTTTCTTGTTCGTT 3 146 0 TTTTTTAAAAATTTCTCCTGGATTTGATGTTAAGAATC 5 11 1 CAAAAGAAGTCTTTCTTTTGGGTTTATTTGTTATATAG 7 132 1 GCCATCTTCTCATTCTCCTTGCCATAAGGAGTGAGAGC 7 186 1 GGATACAGCCAATTCTTTTTTTTATGCTATAATGATAC 12 56 1 CTTGTCCCCAAATTCACATTTATTTCTTAATCTATGTA 12 124 0 CCTGACAGGGCATTCACTTTGCTTTTAGCGGGGCATAT 14 112 1 GTTTAATTGTCTTTCTCTTACTTGCTCTCATTTTTTTC 15 188 1 AAAACTCCACCTTTCTTTTGATTGTCCTCTTGGAAAAG 16 171 0 ***** * * * * * MAP Score: 8.5636 Motif 10 GTTAAATGGCTCCTTTTCGAAGCGGAAG 0 3 1 TTCCTATGAGAAACAGCAGCCTTCCGCTTCGAAAA 0 23 0 TTCTATTTTTAGAAAAGCTCTTTTTGTATCAGAGA 1 27 1 AGAGTATTATAGTGAGCTTCTTTCTCATTATTTCT 2 80 0 AACAATAAGGAATCCTGCGCTTTCCCGAGAAATAC 2 184 0 TCAGTTTTTGAGAGGTCTGTTTTTTGCTCGTATTT 3 15 1 AAACGATGGTAGACCGCTTCTATTTTAATGAAGAA 4 70 1 CTCAATTTCCTCCTTTTCTTAACTTAGT 5 92 0 TCTACCCAAAAGAAGTCTTTCTTTTGGGTTTATTT 7 126 1 AGTGTGCATCAGACCTCTGCCTTTCCCAACGATCT 10 111 1 GTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTT 10 146 0 AAAGCCCCTTAGAAAGGGGCTTTTCTGTGAAGAAA 14 54 0 TTACCGAACGAATATTCCTTTTTTTCCTTTTTTCA 15 13 0 AACATTCCTCAGAGTGCAGTTTTTCTTAAAAAGCC 15 153 1 GAGAAAGACAATTAAACGGCTTTTTAAGAAAAACT 15 170 0 AAAAACTCCACCTTTCTTTTGATTGT 16 184 0 ATGCTTGAGAAGTTTACGACTTTTTCTTGCGCCTT 17 46 1 *** * ****** MAP Score: 8.44216 Motif 11 TTTGTCCAACAAAGTGAAGAATTTCTGTATGTAGAGTAACA 15 114 0 TTCCTATGAGAAACAGCAGCCTTCCGCTTCGAAAAGGAGCC 0 17 0 ATTTCTCGGGAAAGCGCAGGATTCCTTATTGTTCCCGAAAA 2 186 1 AACATTCCTCAGAGTGCAGTTTTTCTTAAAAAGCCGTTTAA 15 153 1 GTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCG 10 140 0 TTATTCTACCCAAAAGAAGTCTTTCTTTTGGGTTTATTTGT 7 122 1 ATTATCAGAAAGATGTTACGATTTCGGTGTGCAGTGTGAAA 11 52 1 TCATATTTCAAGAGCATGGGCTTCCTGACAGGGCATTCACT 14 89 1 AAAGCCCCTTAGAAAGGGGCTTTTCTGTGAAGAAATAAAGT 14 48 0 AGTGTGCATCAGACCTCTGCCTTTCCCAACGATCTAAAATC 10 111 1 TTCTCTGATACAAAAAGAGCTTTTCTAAAAATAGAAAAGCC 1 22 0 TTTTTTATTGAAACAATACAATTTCCTGATAAAACAAGCTA 10 167 1 ACGCGAAAGCTAAGGTAAGTGTTTCCTATGAGAAACAGCAG 0 39 0 TGTTCCCGAAAAAAGCAATTGTTTCGACACATGATAGGCGT 2 215 1 *** ** **** * MAP Score: 5.75217 Motif 12 CGAAAGCTAAGGTAAGTGTTTCCTATGAGAA 0 46 0 TCATGCGGCAAGGGCTTTTCTATTTTT 1 6 1 TCCCGAAAAAAGCAATTGTTTCGACACATGA 2 218 1 TGTCACAATCGGCATCCGCTTGAATATCATA 2 257 1 GCCTTTTCAAAGCAATCGATTTGTGGTATAC 3 52 1 TCCGTTAGCAACTGTTTTGCTATATAC 6 6 1 GCTGTTTGCGAGCATTTGCTTTTAACAGCGG 12 21 0 ATATTTCAAGAGCATGGGCTTCCTGACAGGG 14 91 1 ATCCTTGACGAGCAAGGGATTGACGCTTTAA 15 58 1 TAATTCAACAGGCAGGTGATC 17 141 1 CCATGCTCCAGCAAGTGTTCCGAGAATAAT 19 83 0 ******** ** MAP Score: 5.43671 Motif 13 CATTATTTCTTTTTCATACAACGGGCTGATTTTTGTA 2 53 0 ACCTCTCAGTTTTTGAGAGGTCTGTTTTTTGCTCGTA 3 10 1 GTCTGTTTTTTGCTCGTATTTCCGCCTTTTCAAAGCA 3 29 1 GTGATATGCGGCAGCTGACATCCGACTAAAATGGCTT 3 171 0 AAAATGAACAGTATGACATATCCGGCTATGTCCAAGA 4 103 1 ATGGCAGTGTGCATCAGACCTCTGCCTTTCCCAACGA 10 106 1 GGACAAACATTCCTCAGAGTGCAGTTTTTCTTAAAAA 15 148 1 TATTATCATTTCTTCACAGTTCAGTCTGATTCTAAAC 15 234 0 AGCGTTTACATTCGCAAAATTCAGCCTAATGATGTCT 16 68 1 TTAAAATATGTATTCATAATTCCGGCTGTGTATGACT 17 88 1 * *** * ** * ** MAP Score: 5.07908 Motif 14 AAGAATAGCACAGAAAAAAACGCGAAAGCTAA 0 67 0 AGCCCGTTGTATGAAAAAGAAATAATGAGAAA 2 63 1 AAAAGAAATAATGAGAAAGAAGCTCACTATAA 2 77 1 CGGAAATACGAGCAAAAAACAGACCTCTCAAA 3 21 0 ACTGCCCAATATGCAAAAGAAAGGAACATCCA 3 110 1 GGCACATGTGCTTCAAAAGACG 4 0 0 TTCTATTTTAATGAAGAAAATGAACAGTATGA 4 87 1 AAACTAAGTTAAGAAAAGGAGGAAATTGAG 5 90 1 TGTTTATTCTACCCAAAAGAAGTCTTTCTTTT 7 119 1 AACAAATAAACCCAAAAGAAAGACTTCTTTTG 7 132 0 TGTGGAGAATATGAGAAAACTGTCGAGGGAAT 8 35 1 CTTTTTGCTGAAAAATATGTTATAGTAGT 9 7 1 TTGATTAATTATCAGAAAGATGTTACGATTTC 11 45 1 ATCATTATAGCATAAAAAAAAGAATTGGCTGT 12 60 0 GGATGAAAAAAGGAAAAAAAGGAATATTCGTT 15 10 1 TGCAGTTTTTCTTAAAAAGCCGTTTAATTGTC 15 167 1 GAGAGCAAGTAAGAGAAAGACAATTAAACGGC 15 185 0 AAACCTGTCTCAGAAAAAAATGAGAGCAAGTA 15 206 0 TTCACCTCCTCCCAAAAGGATACATTCAGTTC 15 274 0 GGAGAAAATCTGACAAAAATAATTAGAAAAT 16 9 1 CAAGAGGACAATCAAAAGAAAGGTGGAGTTTT 16 177 1 AAGAAGGCGCAAGAAAAAGTCGTAAACTTCTC 17 52 0 ACATATTTTAATCCGAAGAAGGCGCAAGAAAA 17 67 0 CTGCCGCCACCTGAAAGGAAAGCACAACGGGT 19 34 0 * ******** * MAP Score: 4.1712